Multiple sequence alignment - TraesCS3B01G128700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G128700 chr3B 100.000 4142 0 0 1 4142 107957729 107961870 0.000000e+00 7649
1 TraesCS3B01G128700 chr3B 78.528 326 57 10 1287 1601 157377253 157377576 7.020000e-48 202
2 TraesCS3B01G128700 chr3D 92.175 2901 107 35 783 3625 64761601 64764439 0.000000e+00 3989
3 TraesCS3B01G128700 chr3D 89.521 334 13 6 3645 3957 64764930 64765262 1.790000e-108 403
4 TraesCS3B01G128700 chr3D 84.770 348 28 10 177 516 64761039 64761369 3.990000e-85 326
5 TraesCS3B01G128700 chr3D 75.830 542 104 21 1084 1608 106736732 106737263 2.470000e-62 250
6 TraesCS3B01G128700 chr3A 92.016 1766 63 36 1863 3574 75546404 75548145 0.000000e+00 2409
7 TraesCS3B01G128700 chr3A 93.688 903 30 10 848 1729 75545446 75546342 0.000000e+00 1327
8 TraesCS3B01G128700 chr3A 84.270 445 21 10 3558 3957 75548154 75548594 5.020000e-104 388
9 TraesCS3B01G128700 chr5A 95.455 176 8 0 3944 4119 382566628 382566803 8.770000e-72 281
10 TraesCS3B01G128700 chr5A 92.553 188 12 2 3943 4130 206730842 206731027 6.830000e-68 268
11 TraesCS3B01G128700 chr2D 95.000 180 7 2 3946 4125 446317636 446317813 8.770000e-72 281
12 TraesCS3B01G128700 chr7D 95.429 175 8 0 3946 4120 202716672 202716846 3.150000e-71 279
13 TraesCS3B01G128700 chr4B 95.930 172 7 0 3950 4121 488893290 488893119 3.150000e-71 279
14 TraesCS3B01G128700 chr4B 93.085 188 9 3 3937 4123 136055323 136055507 5.280000e-69 272
15 TraesCS3B01G128700 chr5D 94.444 180 8 2 3942 4119 368995345 368995524 4.080000e-70 276
16 TraesCS3B01G128700 chr2B 93.514 185 10 2 3957 4141 28427334 28427152 1.470000e-69 274
17 TraesCS3B01G128700 chr1D 94.886 176 7 2 3948 4122 178466299 178466473 1.470000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G128700 chr3B 107957729 107961870 4141 False 7649.000000 7649 100.000000 1 4142 1 chr3B.!!$F1 4141
1 TraesCS3B01G128700 chr3D 64761039 64765262 4223 False 1572.666667 3989 88.822000 177 3957 3 chr3D.!!$F2 3780
2 TraesCS3B01G128700 chr3D 106736732 106737263 531 False 250.000000 250 75.830000 1084 1608 1 chr3D.!!$F1 524
3 TraesCS3B01G128700 chr3A 75545446 75548594 3148 False 1374.666667 2409 89.991333 848 3957 3 chr3A.!!$F1 3109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 770 0.036952 CCTGTGCTGTGTACCAGAGG 60.037 60.0 13.57 7.0 44.49 3.69 F
1736 1815 0.096454 GCAACTCGCAACCCGTAATC 59.904 55.0 0.00 0.0 41.79 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2721 2827 0.675837 TGAGTGGGTAGACGACGAGG 60.676 60.0 0.00 0.0 32.45 4.63 R
3698 4345 0.746063 TGGAGGCTGCACAACAAAAG 59.254 50.0 3.93 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.550938 AATGGAGAGAGTATGTCACAATCA 57.449 37.500 0.00 0.00 0.00 2.57
28 29 6.550938 ATGGAGAGAGTATGTCACAATCAA 57.449 37.500 0.00 0.00 0.00 2.57
29 30 5.724328 TGGAGAGAGTATGTCACAATCAAC 58.276 41.667 0.00 0.00 0.00 3.18
30 31 5.481824 TGGAGAGAGTATGTCACAATCAACT 59.518 40.000 0.00 0.00 0.00 3.16
31 32 6.663523 TGGAGAGAGTATGTCACAATCAACTA 59.336 38.462 0.00 0.00 0.00 2.24
32 33 7.178451 TGGAGAGAGTATGTCACAATCAACTAA 59.822 37.037 0.00 0.00 0.00 2.24
33 34 8.035394 GGAGAGAGTATGTCACAATCAACTAAA 58.965 37.037 0.00 0.00 0.00 1.85
34 35 9.593134 GAGAGAGTATGTCACAATCAACTAAAT 57.407 33.333 0.00 0.00 0.00 1.40
35 36 9.950496 AGAGAGTATGTCACAATCAACTAAATT 57.050 29.630 0.00 0.00 0.00 1.82
64 65 6.770746 ATTGATATTTTCTCAAGCAGTGCT 57.229 33.333 13.14 13.14 42.56 4.40
82 83 9.362539 AGCAGTGCTTTAAATATTGAAAATCTG 57.637 29.630 13.14 13.84 33.89 2.90
83 84 9.357652 GCAGTGCTTTAAATATTGAAAATCTGA 57.642 29.630 8.18 0.00 0.00 3.27
107 108 9.100554 TGATTAAAATGACATGAAATCAATGGC 57.899 29.630 13.74 0.00 32.14 4.40
108 109 9.100554 GATTAAAATGACATGAAATCAATGGCA 57.899 29.630 0.00 0.00 37.77 4.92
109 110 8.843885 TTAAAATGACATGAAATCAATGGCAA 57.156 26.923 0.00 0.00 36.84 4.52
110 111 7.931578 AAAATGACATGAAATCAATGGCAAT 57.068 28.000 0.00 0.00 36.84 3.56
111 112 7.931578 AAATGACATGAAATCAATGGCAATT 57.068 28.000 0.00 0.00 36.84 2.32
112 113 7.931578 AATGACATGAAATCAATGGCAATTT 57.068 28.000 0.00 0.00 36.84 1.82
113 114 6.729391 TGACATGAAATCAATGGCAATTTG 57.271 33.333 0.00 0.00 29.09 2.32
114 115 5.122554 TGACATGAAATCAATGGCAATTTGC 59.877 36.000 13.04 13.04 44.08 3.68
131 132 8.491331 GCAATTTGCCAAATTAAATTCTAGGA 57.509 30.769 14.65 0.00 38.97 2.94
132 133 9.112725 GCAATTTGCCAAATTAAATTCTAGGAT 57.887 29.630 14.65 0.00 38.97 3.24
147 148 7.751768 ATTCTAGGATATTTTAGCCAAGTGC 57.248 36.000 0.00 0.00 36.48 4.40
158 159 2.800881 GCCAAGTGCTAAGCAACTTT 57.199 45.000 0.00 0.00 41.47 2.66
159 160 3.097877 GCCAAGTGCTAAGCAACTTTT 57.902 42.857 0.00 0.00 41.47 2.27
160 161 4.237349 GCCAAGTGCTAAGCAACTTTTA 57.763 40.909 0.00 0.00 41.47 1.52
161 162 4.616953 GCCAAGTGCTAAGCAACTTTTAA 58.383 39.130 0.00 0.00 41.47 1.52
162 163 5.047188 GCCAAGTGCTAAGCAACTTTTAAA 58.953 37.500 0.00 0.00 41.47 1.52
163 164 5.175673 GCCAAGTGCTAAGCAACTTTTAAAG 59.824 40.000 2.81 2.81 41.47 1.85
164 165 6.503524 CCAAGTGCTAAGCAACTTTTAAAGA 58.496 36.000 12.02 0.00 41.47 2.52
165 166 7.147976 CCAAGTGCTAAGCAACTTTTAAAGAT 58.852 34.615 12.02 0.00 41.47 2.40
166 167 8.296713 CCAAGTGCTAAGCAACTTTTAAAGATA 58.703 33.333 12.02 0.00 41.47 1.98
167 168 9.334693 CAAGTGCTAAGCAACTTTTAAAGATAG 57.665 33.333 12.02 6.75 41.47 2.08
168 169 8.622948 AGTGCTAAGCAACTTTTAAAGATAGT 57.377 30.769 12.02 0.00 41.47 2.12
169 170 9.720769 AGTGCTAAGCAACTTTTAAAGATAGTA 57.279 29.630 12.02 3.25 41.47 1.82
170 171 9.974750 GTGCTAAGCAACTTTTAAAGATAGTAG 57.025 33.333 12.02 7.12 41.47 2.57
171 172 9.162764 TGCTAAGCAACTTTTAAAGATAGTAGG 57.837 33.333 12.02 0.00 34.76 3.18
172 173 9.163899 GCTAAGCAACTTTTAAAGATAGTAGGT 57.836 33.333 12.02 0.00 0.00 3.08
174 175 7.923414 AGCAACTTTTAAAGATAGTAGGTGG 57.077 36.000 12.02 0.00 0.00 4.61
175 176 7.686434 AGCAACTTTTAAAGATAGTAGGTGGA 58.314 34.615 12.02 0.00 0.00 4.02
176 177 7.824779 AGCAACTTTTAAAGATAGTAGGTGGAG 59.175 37.037 12.02 0.00 0.00 3.86
177 178 7.606839 GCAACTTTTAAAGATAGTAGGTGGAGT 59.393 37.037 12.02 0.00 0.00 3.85
191 192 6.935208 AGTAGGTGGAGTAATGAAAACTTGAC 59.065 38.462 0.00 0.00 0.00 3.18
194 195 5.535030 GGTGGAGTAATGAAAACTTGACCTT 59.465 40.000 0.00 0.00 30.97 3.50
246 249 7.860373 TCCATCAAACGCTGTTTATAAATATGC 59.140 33.333 0.31 5.73 0.00 3.14
267 270 2.726760 CCAAGACGAGAAAGAAGTGACG 59.273 50.000 0.00 0.00 0.00 4.35
274 277 3.550275 CGAGAAAGAAGTGACGTCAAACA 59.450 43.478 21.95 0.00 0.00 2.83
286 289 8.330466 AGTGACGTCAAACATAAAATATCCAA 57.670 30.769 21.95 0.00 0.00 3.53
300 303 2.050836 ATCCAACTCACCACGTGGCA 62.051 55.000 34.26 19.94 39.32 4.92
322 326 2.998279 GCTTGCTGTCCATGGTGGC 61.998 63.158 12.58 14.45 37.47 5.01
335 339 3.368323 CCATGGTGGCCAAATGTTTAGAC 60.368 47.826 22.13 2.09 36.95 2.59
338 342 2.352715 GGTGGCCAAATGTTTAGACAGC 60.353 50.000 7.24 0.00 39.58 4.40
370 374 1.338864 ACCGGTTACACACACACACAA 60.339 47.619 0.00 0.00 0.00 3.33
372 376 2.161808 CCGGTTACACACACACACAAAA 59.838 45.455 0.00 0.00 0.00 2.44
418 422 3.708403 AGTCCAATCTGATCAGTGCAA 57.292 42.857 21.92 3.34 0.00 4.08
443 447 1.257936 CACAACTACACGAGCACACAC 59.742 52.381 0.00 0.00 0.00 3.82
455 462 1.831389 GCACACACAGCACACGTAGG 61.831 60.000 0.00 0.00 0.00 3.18
466 473 2.096174 GCACACGTAGGTCACAAACAAA 59.904 45.455 0.00 0.00 0.00 2.83
480 487 6.308282 GTCACAAACAAACACGTATTTTTCCA 59.692 34.615 0.00 0.00 0.00 3.53
481 488 7.009723 GTCACAAACAAACACGTATTTTTCCAT 59.990 33.333 0.00 0.00 0.00 3.41
482 489 7.221067 TCACAAACAAACACGTATTTTTCCATC 59.779 33.333 0.00 0.00 0.00 3.51
483 490 7.221838 CACAAACAAACACGTATTTTTCCATCT 59.778 33.333 0.00 0.00 0.00 2.90
492 499 6.001460 ACGTATTTTTCCATCTCTGGTCAAA 58.999 36.000 0.00 0.00 43.61 2.69
500 507 7.831691 TTCCATCTCTGGTCAAACAATAAAA 57.168 32.000 0.00 0.00 43.61 1.52
567 586 6.806668 AAATTTTCCTTTGAAGTTCCCTGA 57.193 33.333 0.00 0.00 0.00 3.86
568 587 7.379059 AAATTTTCCTTTGAAGTTCCCTGAT 57.621 32.000 0.00 0.00 0.00 2.90
569 588 7.379059 AATTTTCCTTTGAAGTTCCCTGATT 57.621 32.000 0.00 0.00 0.00 2.57
570 589 6.806668 TTTTCCTTTGAAGTTCCCTGATTT 57.193 33.333 0.00 0.00 0.00 2.17
571 590 5.789643 TTCCTTTGAAGTTCCCTGATTTG 57.210 39.130 0.00 0.00 0.00 2.32
572 591 5.060427 TCCTTTGAAGTTCCCTGATTTGA 57.940 39.130 0.00 0.00 0.00 2.69
573 592 5.454062 TCCTTTGAAGTTCCCTGATTTGAA 58.546 37.500 0.00 0.00 0.00 2.69
574 593 5.536161 TCCTTTGAAGTTCCCTGATTTGAAG 59.464 40.000 0.00 0.00 0.00 3.02
575 594 5.302823 CCTTTGAAGTTCCCTGATTTGAAGT 59.697 40.000 0.00 0.00 0.00 3.01
576 595 6.490040 CCTTTGAAGTTCCCTGATTTGAAGTA 59.510 38.462 0.00 0.00 0.00 2.24
577 596 7.177392 CCTTTGAAGTTCCCTGATTTGAAGTAT 59.823 37.037 0.00 0.00 0.00 2.12
578 597 8.477419 TTTGAAGTTCCCTGATTTGAAGTATT 57.523 30.769 0.00 0.00 0.00 1.89
579 598 7.452880 TGAAGTTCCCTGATTTGAAGTATTG 57.547 36.000 0.00 0.00 0.00 1.90
580 599 6.434028 TGAAGTTCCCTGATTTGAAGTATTGG 59.566 38.462 0.00 0.00 0.00 3.16
581 600 6.139679 AGTTCCCTGATTTGAAGTATTGGA 57.860 37.500 0.00 0.00 0.00 3.53
582 601 6.552008 AGTTCCCTGATTTGAAGTATTGGAA 58.448 36.000 0.00 0.00 0.00 3.53
583 602 7.184862 AGTTCCCTGATTTGAAGTATTGGAAT 58.815 34.615 0.00 0.00 32.51 3.01
584 603 7.675619 AGTTCCCTGATTTGAAGTATTGGAATT 59.324 33.333 0.00 0.00 32.51 2.17
585 604 8.314021 GTTCCCTGATTTGAAGTATTGGAATTT 58.686 33.333 0.00 0.00 32.51 1.82
586 605 8.434589 TCCCTGATTTGAAGTATTGGAATTTT 57.565 30.769 0.00 0.00 0.00 1.82
587 606 8.879227 TCCCTGATTTGAAGTATTGGAATTTTT 58.121 29.630 0.00 0.00 0.00 1.94
619 638 1.286553 TGCGGGGGAAGTATTGGATTT 59.713 47.619 0.00 0.00 0.00 2.17
620 639 2.291930 TGCGGGGGAAGTATTGGATTTT 60.292 45.455 0.00 0.00 0.00 1.82
626 645 7.207383 CGGGGGAAGTATTGGATTTTTATTTC 58.793 38.462 0.00 0.00 0.00 2.17
628 647 9.429109 GGGGGAAGTATTGGATTTTTATTTCTA 57.571 33.333 0.00 0.00 0.00 2.10
689 708 8.522830 GGATTTGTTTCTATCCTTCACATTTCA 58.477 33.333 0.00 0.00 37.83 2.69
690 709 9.565213 GATTTGTTTCTATCCTTCACATTTCAG 57.435 33.333 0.00 0.00 0.00 3.02
692 711 8.690203 TTGTTTCTATCCTTCACATTTCAGAA 57.310 30.769 0.00 0.00 0.00 3.02
696 715 8.783833 TTCTATCCTTCACATTTCAGAAGAAG 57.216 34.615 0.00 3.79 42.95 2.85
701 720 7.934457 TCCTTCACATTTCAGAAGAAGAAAAG 58.066 34.615 10.20 0.00 42.95 2.27
702 721 7.775093 TCCTTCACATTTCAGAAGAAGAAAAGA 59.225 33.333 10.20 0.00 42.95 2.52
704 723 9.962783 CTTCACATTTCAGAAGAAGAAAAGAAT 57.037 29.630 4.54 0.00 42.95 2.40
708 727 9.294614 ACATTTCAGAAGAAGAAAAGAATAGCT 57.705 29.630 0.00 0.00 38.36 3.32
724 743 9.969001 AAAGAATAGCTTATACCTTACCAAACA 57.031 29.630 0.00 0.00 35.24 2.83
725 744 9.969001 AAGAATAGCTTATACCTTACCAAACAA 57.031 29.630 0.00 0.00 34.31 2.83
726 745 9.969001 AGAATAGCTTATACCTTACCAAACAAA 57.031 29.630 0.00 0.00 0.00 2.83
747 766 2.949177 AAATCCTGTGCTGTGTACCA 57.051 45.000 0.00 0.00 0.00 3.25
748 767 2.479566 AATCCTGTGCTGTGTACCAG 57.520 50.000 6.91 6.91 44.53 4.00
749 768 1.644509 ATCCTGTGCTGTGTACCAGA 58.355 50.000 13.57 0.00 44.49 3.86
750 769 0.969149 TCCTGTGCTGTGTACCAGAG 59.031 55.000 13.57 2.14 44.49 3.35
751 770 0.036952 CCTGTGCTGTGTACCAGAGG 60.037 60.000 13.57 7.00 44.49 3.69
752 771 0.969149 CTGTGCTGTGTACCAGAGGA 59.031 55.000 13.57 0.00 44.49 3.71
757 797 2.289631 TGCTGTGTACCAGAGGAACATG 60.290 50.000 13.57 0.00 44.49 3.21
764 804 2.893424 ACCAGAGGAACATGCCATTTT 58.107 42.857 0.00 0.00 0.00 1.82
769 809 6.044682 CCAGAGGAACATGCCATTTTATTTC 58.955 40.000 0.00 0.00 0.00 2.17
770 810 6.044682 CAGAGGAACATGCCATTTTATTTCC 58.955 40.000 0.00 0.00 32.72 3.13
771 811 5.960202 AGAGGAACATGCCATTTTATTTCCT 59.040 36.000 7.88 7.88 43.23 3.36
772 812 5.981174 AGGAACATGCCATTTTATTTCCTG 58.019 37.500 7.46 0.00 39.89 3.86
774 814 6.667414 AGGAACATGCCATTTTATTTCCTGTA 59.333 34.615 7.46 0.00 39.89 2.74
775 815 7.345392 AGGAACATGCCATTTTATTTCCTGTAT 59.655 33.333 7.46 0.00 39.89 2.29
776 816 8.637986 GGAACATGCCATTTTATTTCCTGTATA 58.362 33.333 0.00 0.00 0.00 1.47
778 818 9.985730 AACATGCCATTTTATTTCCTGTATATG 57.014 29.630 0.00 0.00 0.00 1.78
779 819 9.365906 ACATGCCATTTTATTTCCTGTATATGA 57.634 29.630 0.00 0.00 0.00 2.15
806 849 9.451002 TTCTATGATACTCCTATTCTACGAAGG 57.549 37.037 0.00 0.00 0.00 3.46
810 853 7.515586 TGATACTCCTATTCTACGAAGGAAGA 58.484 38.462 0.00 0.00 38.91 2.87
817 860 1.825474 TCTACGAAGGAAGAAGGCCTG 59.175 52.381 5.69 0.00 35.50 4.85
819 862 0.610687 ACGAAGGAAGAAGGCCTGAG 59.389 55.000 5.69 0.00 35.50 3.35
840 886 1.929836 CTTTCACCGTAGCAGCATCTC 59.070 52.381 0.00 0.00 0.00 2.75
841 887 0.894835 TTCACCGTAGCAGCATCTCA 59.105 50.000 0.00 0.00 0.00 3.27
912 968 4.382685 CCCTATATATACGGGGTGCAACTG 60.383 50.000 0.00 0.00 36.74 3.16
916 972 2.457743 ATACGGGGTGCAACTGCGAA 62.458 55.000 0.00 0.00 45.83 4.70
943 999 5.047660 GCAAAACACCACAGGATAATTACCA 60.048 40.000 6.80 0.00 0.00 3.25
944 1000 6.620678 CAAAACACCACAGGATAATTACCAG 58.379 40.000 6.80 2.38 0.00 4.00
945 1001 3.886123 ACACCACAGGATAATTACCAGC 58.114 45.455 6.80 0.00 0.00 4.85
946 1002 3.265737 ACACCACAGGATAATTACCAGCA 59.734 43.478 6.80 0.00 0.00 4.41
947 1003 3.879295 CACCACAGGATAATTACCAGCAG 59.121 47.826 6.80 0.00 0.00 4.24
948 1004 3.780294 ACCACAGGATAATTACCAGCAGA 59.220 43.478 6.80 0.00 0.00 4.26
949 1005 4.413520 ACCACAGGATAATTACCAGCAGAT 59.586 41.667 6.80 0.00 0.00 2.90
950 1006 4.999950 CCACAGGATAATTACCAGCAGATC 59.000 45.833 6.80 0.00 0.00 2.75
976 1032 0.581529 ATCATCACATTAACGCGCCG 59.418 50.000 5.73 0.00 0.00 6.46
1533 1598 3.989698 CTCGAACGCCGGCATCAGT 62.990 63.158 28.98 13.64 39.14 3.41
1661 1738 0.321122 AGCAACTCCCTCTCGCAAAG 60.321 55.000 0.00 0.00 0.00 2.77
1662 1739 0.603975 GCAACTCCCTCTCGCAAAGT 60.604 55.000 0.00 0.00 0.00 2.66
1663 1740 1.337823 GCAACTCCCTCTCGCAAAGTA 60.338 52.381 0.00 0.00 0.00 2.24
1670 1747 3.442977 TCCCTCTCGCAAAGTAGTAGTTC 59.557 47.826 0.00 0.00 0.00 3.01
1690 1767 0.605319 CGTACCCCACACTGCAATGT 60.605 55.000 0.00 0.00 0.00 2.71
1713 1792 6.150140 TGTTGCAAAAATGGCTAACTTGTTTT 59.850 30.769 0.00 0.00 0.00 2.43
1734 1813 3.645286 GCAACTCGCAACCCGTAA 58.355 55.556 0.00 0.00 41.79 3.18
1735 1814 2.168054 GCAACTCGCAACCCGTAAT 58.832 52.632 0.00 0.00 41.79 1.89
1736 1815 0.096454 GCAACTCGCAACCCGTAATC 59.904 55.000 0.00 0.00 41.79 1.75
1737 1816 0.725117 CAACTCGCAACCCGTAATCC 59.275 55.000 0.00 0.00 38.35 3.01
1738 1817 0.738412 AACTCGCAACCCGTAATCCG 60.738 55.000 0.00 0.00 38.35 4.18
1770 1853 5.168569 GTGGAATCACGTTCATCTTCTACA 58.831 41.667 0.00 0.00 38.64 2.74
1778 1861 3.650139 GTTCATCTTCTACACACACGGT 58.350 45.455 0.00 0.00 0.00 4.83
1784 1867 4.898320 TCTTCTACACACACGGTAGTCTA 58.102 43.478 0.00 0.00 39.36 2.59
1785 1868 5.308014 TCTTCTACACACACGGTAGTCTAA 58.692 41.667 0.00 0.00 39.36 2.10
2057 2163 2.500795 TGCAATTAACGCGCGTGC 60.501 55.556 38.44 32.69 35.75 5.34
2058 2164 3.237538 GCAATTAACGCGCGTGCC 61.238 61.111 38.44 16.70 38.08 5.01
2059 2165 2.937003 CAATTAACGCGCGTGCCG 60.937 61.111 38.44 19.19 38.08 5.69
2060 2166 3.416382 AATTAACGCGCGTGCCGT 61.416 55.556 38.44 23.52 39.71 5.68
2083 2189 2.659897 CAGGCTACGGCGAGATGC 60.660 66.667 16.62 11.62 45.38 3.91
2127 2233 2.562912 GACCTGTTCGACGCGGTA 59.437 61.111 12.47 0.00 0.00 4.02
2233 2339 1.582968 GTCTACACCGACTTCGCCA 59.417 57.895 0.00 0.00 38.18 5.69
2238 2344 1.597027 CACCGACTTCGCCACCTTT 60.597 57.895 0.00 0.00 38.18 3.11
2493 2599 2.279069 CGTGGACCAGGAGCTCAGT 61.279 63.158 17.19 9.59 0.00 3.41
2500 2606 1.079543 CAGGAGCTCAGTTCGGTGG 60.080 63.158 17.19 0.00 0.00 4.61
2736 2842 2.044650 CCCCTCGTCGTCTACCCA 60.045 66.667 0.00 0.00 0.00 4.51
2756 2862 3.364964 CCACTCAACAAATCCAAGTACGC 60.365 47.826 0.00 0.00 0.00 4.42
2757 2863 3.249799 CACTCAACAAATCCAAGTACGCA 59.750 43.478 0.00 0.00 0.00 5.24
2758 2864 3.250040 ACTCAACAAATCCAAGTACGCAC 59.750 43.478 0.00 0.00 0.00 5.34
2802 2908 3.310727 TGCGATCCTGCATGGTATG 57.689 52.632 0.00 0.00 40.62 2.39
2836 2955 2.430921 GACACTGGCTCGGTCGTG 60.431 66.667 0.00 0.00 0.00 4.35
3237 3379 5.809051 CCCGTTTTTACTCATGTAGTAGGTC 59.191 44.000 0.00 0.00 41.70 3.85
3238 3380 6.392354 CCGTTTTTACTCATGTAGTAGGTCA 58.608 40.000 0.00 0.00 41.70 4.02
3263 3405 6.080648 ACGGTAATAATATGCTCTGTCGAA 57.919 37.500 0.00 0.00 0.00 3.71
3277 3419 4.482386 TCTGTCGAACTTTAATCTCCACG 58.518 43.478 0.00 0.00 0.00 4.94
3290 3432 0.109132 CTCCACGTGTACCCGTTACC 60.109 60.000 15.65 0.00 39.45 2.85
3304 3446 6.212888 ACCCGTTACCAATTAGTAGTAGTG 57.787 41.667 0.00 0.00 0.00 2.74
3368 3510 8.437742 CACTTTGCCAGATAAATGTTTCATTTC 58.562 33.333 10.35 0.00 0.00 2.17
3375 3517 7.701078 CCAGATAAATGTTTCATTTCAGCTCAG 59.299 37.037 10.35 3.31 0.00 3.35
3393 3535 2.564947 TCAGGAGCAGAAGAGGACTTTC 59.435 50.000 0.00 0.00 36.39 2.62
3411 3553 3.624326 TTCGCATGTCTTGTTCCTTTG 57.376 42.857 0.00 0.00 0.00 2.77
3423 3565 3.506810 TGTTCCTTTGTTTGTTTGAGCG 58.493 40.909 0.00 0.00 0.00 5.03
3446 3588 6.555315 CGCTTTTATAAGATTGCTCCAACTT 58.445 36.000 0.00 0.00 32.92 2.66
3447 3589 7.678690 GCGCTTTTATAAGATTGCTCCAACTTA 60.679 37.037 0.00 0.00 32.92 2.24
3448 3590 7.640240 CGCTTTTATAAGATTGCTCCAACTTAC 59.360 37.037 0.00 0.00 32.92 2.34
3466 3608 4.741264 ACTTACTTACCTCCTAGGGGGTAT 59.259 45.833 36.43 26.22 40.58 2.73
3467 3609 5.925468 ACTTACTTACCTCCTAGGGGGTATA 59.075 44.000 36.43 25.21 40.58 1.47
3468 3610 6.397055 ACTTACTTACCTCCTAGGGGGTATAA 59.603 42.308 36.43 29.24 40.58 0.98
3469 3611 5.351218 ACTTACCTCCTAGGGGGTATAAG 57.649 47.826 36.43 33.11 40.58 1.73
3470 3612 4.993534 ACTTACCTCCTAGGGGGTATAAGA 59.006 45.833 35.64 23.96 40.58 2.10
3489 3631 3.501349 AGAGGAGTGTTTAGTCTGAGCA 58.499 45.455 0.00 0.00 0.00 4.26
3586 3761 7.384932 AGGCAAGTTATTTTGATGTGCTAAAAC 59.615 33.333 0.00 0.00 0.00 2.43
3602 3777 8.134895 TGTGCTAAAACTGGAAGATTTTTAGTG 58.865 33.333 12.33 0.00 41.16 2.74
3698 4345 3.311048 GCAGCTAGAAGTATCTTTGTGCC 59.689 47.826 0.00 0.00 37.10 5.01
3805 4466 5.237815 TCGTACTCAAAGCATCTCATGTTT 58.762 37.500 0.00 0.00 35.09 2.83
3847 4508 6.530181 TGATGAATTGTGTACATGACGTCTAC 59.470 38.462 17.92 11.46 0.00 2.59
3886 4547 2.032620 CTACCCCGTCAAGCTCACTAT 58.967 52.381 0.00 0.00 0.00 2.12
3901 4562 5.239525 AGCTCACTATTCAAAGTCAAACACC 59.760 40.000 0.00 0.00 0.00 4.16
3924 4593 8.081633 CACCAAAAGTAGATACATGAAAAGCAA 58.918 33.333 0.00 0.00 0.00 3.91
3957 4626 7.265673 TGTGTCCTATTCATAGCAAACTAGTC 58.734 38.462 0.00 0.00 0.00 2.59
3958 4627 6.702282 GTGTCCTATTCATAGCAAACTAGTCC 59.298 42.308 0.00 0.00 0.00 3.85
3959 4628 6.183360 TGTCCTATTCATAGCAAACTAGTCCC 60.183 42.308 0.00 0.00 0.00 4.46
3960 4629 6.042208 GTCCTATTCATAGCAAACTAGTCCCT 59.958 42.308 0.00 0.00 0.00 4.20
3961 4630 6.267928 TCCTATTCATAGCAAACTAGTCCCTC 59.732 42.308 0.00 0.00 0.00 4.30
3962 4631 4.755266 TTCATAGCAAACTAGTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
3963 4632 3.719871 TCATAGCAAACTAGTCCCTCCA 58.280 45.455 0.00 0.00 0.00 3.86
3964 4633 4.298626 TCATAGCAAACTAGTCCCTCCAT 58.701 43.478 0.00 0.00 0.00 3.41
3965 4634 4.721776 TCATAGCAAACTAGTCCCTCCATT 59.278 41.667 0.00 0.00 0.00 3.16
3966 4635 3.636153 AGCAAACTAGTCCCTCCATTC 57.364 47.619 0.00 0.00 0.00 2.67
3967 4636 2.239907 AGCAAACTAGTCCCTCCATTCC 59.760 50.000 0.00 0.00 0.00 3.01
3968 4637 2.239907 GCAAACTAGTCCCTCCATTCCT 59.760 50.000 0.00 0.00 0.00 3.36
3969 4638 3.454812 GCAAACTAGTCCCTCCATTCCTA 59.545 47.826 0.00 0.00 0.00 2.94
3970 4639 4.080526 GCAAACTAGTCCCTCCATTCCTAA 60.081 45.833 0.00 0.00 0.00 2.69
3971 4640 5.572885 GCAAACTAGTCCCTCCATTCCTAAA 60.573 44.000 0.00 0.00 0.00 1.85
3972 4641 6.663734 CAAACTAGTCCCTCCATTCCTAAAT 58.336 40.000 0.00 0.00 0.00 1.40
3973 4642 7.637301 GCAAACTAGTCCCTCCATTCCTAAATA 60.637 40.741 0.00 0.00 0.00 1.40
3974 4643 8.440771 CAAACTAGTCCCTCCATTCCTAAATAT 58.559 37.037 0.00 0.00 0.00 1.28
3975 4644 8.582891 AACTAGTCCCTCCATTCCTAAATATT 57.417 34.615 0.00 0.00 0.00 1.28
3976 4645 8.582891 ACTAGTCCCTCCATTCCTAAATATTT 57.417 34.615 5.89 5.89 0.00 1.40
3977 4646 8.440771 ACTAGTCCCTCCATTCCTAAATATTTG 58.559 37.037 11.05 1.40 0.00 2.32
3978 4647 7.226059 AGTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
3979 4648 7.290813 AGTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
3980 4649 7.129504 AGTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
3981 4650 7.780271 GTCCCTCCATTCCTAAATATTTGTCTT 59.220 37.037 11.05 0.00 0.00 3.01
3982 4651 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
3983 4652 8.981659 CCCTCCATTCCTAAATATTTGTCTTTT 58.018 33.333 11.05 0.00 0.00 2.27
4014 4683 4.121906 TGGACTACCACATGCGGA 57.878 55.556 6.80 0.00 41.77 5.54
4015 4684 2.602890 TGGACTACCACATGCGGAT 58.397 52.632 6.80 0.00 41.77 4.18
4016 4685 0.177836 TGGACTACCACATGCGGATG 59.822 55.000 16.07 16.07 41.77 3.51
4017 4686 0.178068 GGACTACCACATGCGGATGT 59.822 55.000 17.64 17.64 44.08 3.06
4018 4687 1.411246 GGACTACCACATGCGGATGTA 59.589 52.381 22.75 6.53 41.12 2.29
4019 4688 2.037251 GGACTACCACATGCGGATGTAT 59.963 50.000 22.75 15.65 41.12 2.29
4020 4689 3.257375 GGACTACCACATGCGGATGTATA 59.743 47.826 22.75 15.93 41.12 1.47
4021 4690 4.081642 GGACTACCACATGCGGATGTATAT 60.082 45.833 22.75 12.86 41.12 0.86
4022 4691 5.126545 GGACTACCACATGCGGATGTATATA 59.873 44.000 22.75 13.28 41.12 0.86
4023 4692 6.208988 ACTACCACATGCGGATGTATATAG 57.791 41.667 22.75 22.33 41.12 1.31
4024 4693 5.949952 ACTACCACATGCGGATGTATATAGA 59.050 40.000 26.73 11.35 41.12 1.98
4025 4694 5.073311 ACCACATGCGGATGTATATAGAC 57.927 43.478 22.75 0.00 41.12 2.59
4026 4695 4.526650 ACCACATGCGGATGTATATAGACA 59.473 41.667 22.75 2.07 41.12 3.41
4027 4696 5.187772 ACCACATGCGGATGTATATAGACAT 59.812 40.000 22.75 12.70 41.12 3.06
4028 4697 6.379988 ACCACATGCGGATGTATATAGACATA 59.620 38.462 22.75 0.00 41.12 2.29
4029 4698 7.069950 ACCACATGCGGATGTATATAGACATAT 59.930 37.037 22.75 0.80 41.12 1.78
4030 4699 7.928167 CCACATGCGGATGTATATAGACATATT 59.072 37.037 22.75 0.00 41.12 1.28
4031 4700 9.317936 CACATGCGGATGTATATAGACATATTT 57.682 33.333 22.75 0.00 41.12 1.40
4032 4701 9.890629 ACATGCGGATGTATATAGACATATTTT 57.109 29.630 21.92 0.00 41.27 1.82
4058 4727 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4059 4728 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4060 4729 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4061 4730 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4062 4731 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4063 4732 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4064 4733 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4065 4734 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4066 4735 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4067 4736 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4068 4737 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4069 4738 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4070 4739 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4071 4740 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4072 4741 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4073 4742 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4074 4743 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4075 4744 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4076 4745 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4077 4746 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4078 4747 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4079 4748 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4080 4749 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4081 4750 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4082 4751 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4083 4752 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
4084 4753 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
4085 4754 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4086 4755 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4087 4756 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4088 4757 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4089 4758 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4090 4759 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4091 4760 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4092 4761 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4093 4762 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4094 4763 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4095 4764 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4096 4765 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4109 4778 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4110 4779 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4111 4780 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4112 4781 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4113 4782 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
4114 4783 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
4115 4784 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
4116 4785 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
4117 4786 7.854337 ACAAATATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
4118 4787 7.985752 ACAAATATTTAGGAACGGAGGAAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
4119 4788 7.672122 AATATTTAGGAACGGAGGAAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
4120 4789 8.773033 AATATTTAGGAACGGAGGAAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
4121 4790 8.953223 ATATTTAGGAACGGAGGAAGTAGTAT 57.047 34.615 0.00 0.00 0.00 2.12
4122 4791 7.672122 ATTTAGGAACGGAGGAAGTAGTATT 57.328 36.000 0.00 0.00 0.00 1.89
4123 4792 7.486407 TTTAGGAACGGAGGAAGTAGTATTT 57.514 36.000 0.00 0.00 0.00 1.40
4124 4793 7.486407 TTAGGAACGGAGGAAGTAGTATTTT 57.514 36.000 0.00 0.00 0.00 1.82
4125 4794 6.370186 AGGAACGGAGGAAGTAGTATTTTT 57.630 37.500 0.00 0.00 0.00 1.94
4126 4795 6.171213 AGGAACGGAGGAAGTAGTATTTTTG 58.829 40.000 0.00 0.00 0.00 2.44
4127 4796 6.013984 AGGAACGGAGGAAGTAGTATTTTTGA 60.014 38.462 0.00 0.00 0.00 2.69
4128 4797 6.652062 GGAACGGAGGAAGTAGTATTTTTGAA 59.348 38.462 0.00 0.00 0.00 2.69
4129 4798 7.173735 GGAACGGAGGAAGTAGTATTTTTGAAA 59.826 37.037 0.00 0.00 0.00 2.69
4130 4799 8.454570 AACGGAGGAAGTAGTATTTTTGAAAA 57.545 30.769 0.00 0.00 0.00 2.29
4131 4800 7.868775 ACGGAGGAAGTAGTATTTTTGAAAAC 58.131 34.615 0.00 0.00 0.00 2.43
4132 4801 7.718314 ACGGAGGAAGTAGTATTTTTGAAAACT 59.282 33.333 0.00 0.00 0.00 2.66
4133 4802 8.228464 CGGAGGAAGTAGTATTTTTGAAAACTC 58.772 37.037 0.00 0.00 0.00 3.01
4134 4803 9.063615 GGAGGAAGTAGTATTTTTGAAAACTCA 57.936 33.333 0.00 0.00 0.00 3.41
4135 4804 9.880064 GAGGAAGTAGTATTTTTGAAAACTCAC 57.120 33.333 0.00 0.00 0.00 3.51
4136 4805 9.403583 AGGAAGTAGTATTTTTGAAAACTCACA 57.596 29.630 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.255111 TGATTGTGACATACTCTCTCCATTAT 57.745 34.615 0.00 0.00 0.00 1.28
3 4 7.660030 TGATTGTGACATACTCTCTCCATTA 57.340 36.000 0.00 0.00 0.00 1.90
4 5 6.550938 TGATTGTGACATACTCTCTCCATT 57.449 37.500 0.00 0.00 0.00 3.16
5 6 6.155910 AGTTGATTGTGACATACTCTCTCCAT 59.844 38.462 0.00 0.00 0.00 3.41
6 7 5.481824 AGTTGATTGTGACATACTCTCTCCA 59.518 40.000 0.00 0.00 0.00 3.86
7 8 5.971763 AGTTGATTGTGACATACTCTCTCC 58.028 41.667 0.00 0.00 0.00 3.71
8 9 8.988064 TTTAGTTGATTGTGACATACTCTCTC 57.012 34.615 0.00 0.00 0.00 3.20
9 10 9.950496 AATTTAGTTGATTGTGACATACTCTCT 57.050 29.630 0.00 0.00 0.00 3.10
38 39 8.910944 AGCACTGCTTGAGAAAATATCAATAAT 58.089 29.630 0.00 0.00 33.89 1.28
39 40 8.284945 AGCACTGCTTGAGAAAATATCAATAA 57.715 30.769 0.00 0.00 33.89 1.40
40 41 7.870509 AGCACTGCTTGAGAAAATATCAATA 57.129 32.000 0.00 0.00 33.89 1.90
41 42 6.770746 AGCACTGCTTGAGAAAATATCAAT 57.229 33.333 0.00 0.00 33.89 2.57
56 57 9.362539 CAGATTTTCAATATTTAAAGCACTGCT 57.637 29.630 0.00 0.00 42.56 4.24
57 58 9.357652 TCAGATTTTCAATATTTAAAGCACTGC 57.642 29.630 9.47 0.00 0.00 4.40
81 82 9.100554 GCCATTGATTTCATGTCATTTTAATCA 57.899 29.630 8.75 8.75 32.07 2.57
82 83 9.100554 TGCCATTGATTTCATGTCATTTTAATC 57.899 29.630 0.00 0.00 0.00 1.75
83 84 9.451002 TTGCCATTGATTTCATGTCATTTTAAT 57.549 25.926 0.00 0.00 0.00 1.40
84 85 8.843885 TTGCCATTGATTTCATGTCATTTTAA 57.156 26.923 0.00 0.00 0.00 1.52
85 86 9.451002 AATTGCCATTGATTTCATGTCATTTTA 57.549 25.926 0.00 0.00 0.00 1.52
86 87 7.931578 ATTGCCATTGATTTCATGTCATTTT 57.068 28.000 0.00 0.00 0.00 1.82
87 88 7.931578 AATTGCCATTGATTTCATGTCATTT 57.068 28.000 0.00 0.00 0.00 2.32
88 89 7.627513 GCAAATTGCCATTGATTTCATGTCATT 60.628 33.333 6.72 0.00 37.42 2.57
89 90 6.183360 GCAAATTGCCATTGATTTCATGTCAT 60.183 34.615 6.72 0.00 37.42 3.06
90 91 5.122554 GCAAATTGCCATTGATTTCATGTCA 59.877 36.000 6.72 0.00 37.42 3.58
91 92 5.565695 GCAAATTGCCATTGATTTCATGTC 58.434 37.500 6.72 0.00 37.42 3.06
92 93 5.554822 GCAAATTGCCATTGATTTCATGT 57.445 34.783 6.72 0.00 37.42 3.21
106 107 8.491331 TCCTAGAATTTAATTTGGCAAATTGC 57.509 30.769 36.22 23.15 41.01 3.56
121 122 8.633561 GCACTTGGCTAAAATATCCTAGAATTT 58.366 33.333 0.00 0.00 40.25 1.82
122 123 8.171164 GCACTTGGCTAAAATATCCTAGAATT 57.829 34.615 0.00 0.00 40.25 2.17
123 124 7.751768 GCACTTGGCTAAAATATCCTAGAAT 57.248 36.000 0.00 0.00 40.25 2.40
139 140 2.800881 AAAGTTGCTTAGCACTTGGC 57.199 45.000 6.34 0.00 38.71 4.52
140 141 6.503524 TCTTTAAAAGTTGCTTAGCACTTGG 58.496 36.000 6.34 4.20 38.71 3.61
141 142 9.334693 CTATCTTTAAAAGTTGCTTAGCACTTG 57.665 33.333 6.34 2.62 38.71 3.16
142 143 9.067986 ACTATCTTTAAAAGTTGCTTAGCACTT 57.932 29.630 6.34 10.98 38.71 3.16
143 144 8.622948 ACTATCTTTAAAAGTTGCTTAGCACT 57.377 30.769 6.34 4.91 38.71 4.40
144 145 9.974750 CTACTATCTTTAAAAGTTGCTTAGCAC 57.025 33.333 6.34 2.37 38.71 4.40
145 146 9.162764 CCTACTATCTTTAAAAGTTGCTTAGCA 57.837 33.333 1.39 1.39 36.47 3.49
146 147 9.163899 ACCTACTATCTTTAAAAGTTGCTTAGC 57.836 33.333 0.00 0.00 0.00 3.09
148 149 9.444600 CCACCTACTATCTTTAAAAGTTGCTTA 57.555 33.333 0.00 0.00 0.00 3.09
149 150 8.161425 TCCACCTACTATCTTTAAAAGTTGCTT 58.839 33.333 0.00 0.00 0.00 3.91
150 151 7.686434 TCCACCTACTATCTTTAAAAGTTGCT 58.314 34.615 0.00 0.00 0.00 3.91
151 152 7.606839 ACTCCACCTACTATCTTTAAAAGTTGC 59.393 37.037 0.00 0.00 0.00 4.17
160 161 9.668497 GTTTTCATTACTCCACCTACTATCTTT 57.332 33.333 0.00 0.00 0.00 2.52
161 162 9.047947 AGTTTTCATTACTCCACCTACTATCTT 57.952 33.333 0.00 0.00 0.00 2.40
162 163 8.611051 AGTTTTCATTACTCCACCTACTATCT 57.389 34.615 0.00 0.00 0.00 1.98
163 164 9.099454 CAAGTTTTCATTACTCCACCTACTATC 57.901 37.037 0.00 0.00 0.00 2.08
164 165 8.822805 TCAAGTTTTCATTACTCCACCTACTAT 58.177 33.333 0.00 0.00 0.00 2.12
165 166 8.092687 GTCAAGTTTTCATTACTCCACCTACTA 58.907 37.037 0.00 0.00 0.00 1.82
166 167 6.935208 GTCAAGTTTTCATTACTCCACCTACT 59.065 38.462 0.00 0.00 0.00 2.57
167 168 6.148976 GGTCAAGTTTTCATTACTCCACCTAC 59.851 42.308 0.00 0.00 30.19 3.18
168 169 6.043938 AGGTCAAGTTTTCATTACTCCACCTA 59.956 38.462 0.00 0.00 36.51 3.08
169 170 5.070685 GGTCAAGTTTTCATTACTCCACCT 58.929 41.667 0.00 0.00 30.19 4.00
170 171 5.070685 AGGTCAAGTTTTCATTACTCCACC 58.929 41.667 0.00 0.00 31.75 4.61
171 172 6.635030 AAGGTCAAGTTTTCATTACTCCAC 57.365 37.500 0.00 0.00 0.00 4.02
172 173 7.654022 AAAAGGTCAAGTTTTCATTACTCCA 57.346 32.000 0.00 0.00 0.00 3.86
246 249 2.726760 CGTCACTTCTTTCTCGTCTTGG 59.273 50.000 0.00 0.00 0.00 3.61
267 270 8.519526 TGGTGAGTTGGATATTTTATGTTTGAC 58.480 33.333 0.00 0.00 0.00 3.18
274 277 5.588648 CCACGTGGTGAGTTGGATATTTTAT 59.411 40.000 26.95 0.00 35.23 1.40
286 289 1.069765 CTCTTGCCACGTGGTGAGT 59.930 57.895 33.92 0.00 35.23 3.41
300 303 0.403271 ACCATGGACAGCAAGCTCTT 59.597 50.000 21.47 0.00 0.00 2.85
322 326 1.135402 GCCGGCTGTCTAAACATTTGG 60.135 52.381 22.15 0.00 34.13 3.28
394 398 4.828939 TGCACTGATCAGATTGGACTTTTT 59.171 37.500 29.27 0.00 0.00 1.94
395 399 4.401022 TGCACTGATCAGATTGGACTTTT 58.599 39.130 29.27 0.00 0.00 2.27
396 400 4.025040 TGCACTGATCAGATTGGACTTT 57.975 40.909 29.27 0.00 0.00 2.66
397 401 3.708403 TGCACTGATCAGATTGGACTT 57.292 42.857 29.27 0.63 0.00 3.01
398 402 3.708403 TTGCACTGATCAGATTGGACT 57.292 42.857 29.27 1.44 0.00 3.85
399 403 4.877823 TGTATTGCACTGATCAGATTGGAC 59.122 41.667 29.27 17.56 0.00 4.02
418 422 3.243602 TGTGCTCGTGTAGTTGTGTGTAT 60.244 43.478 0.00 0.00 0.00 2.29
443 447 1.260561 GTTTGTGACCTACGTGTGCTG 59.739 52.381 0.00 0.00 0.00 4.41
455 462 6.308282 TGGAAAAATACGTGTTTGTTTGTGAC 59.692 34.615 11.24 0.00 0.00 3.67
466 473 4.906618 ACCAGAGATGGAAAAATACGTGT 58.093 39.130 0.00 0.00 0.00 4.49
542 561 8.312669 TCAGGGAACTTCAAAGGAAAATTTTA 57.687 30.769 2.75 0.00 40.21 1.52
547 566 6.382570 TCAAATCAGGGAACTTCAAAGGAAAA 59.617 34.615 0.00 0.00 40.21 2.29
560 579 8.434589 AAATTCCAATACTTCAAATCAGGGAA 57.565 30.769 0.00 0.00 36.45 3.97
561 580 8.434589 AAAATTCCAATACTTCAAATCAGGGA 57.565 30.769 0.00 0.00 0.00 4.20
595 614 1.896465 CCAATACTTCCCCCGCAAAAA 59.104 47.619 0.00 0.00 0.00 1.94
596 615 1.075698 TCCAATACTTCCCCCGCAAAA 59.924 47.619 0.00 0.00 0.00 2.44
597 616 0.699399 TCCAATACTTCCCCCGCAAA 59.301 50.000 0.00 0.00 0.00 3.68
598 617 0.923358 ATCCAATACTTCCCCCGCAA 59.077 50.000 0.00 0.00 0.00 4.85
599 618 0.923358 AATCCAATACTTCCCCCGCA 59.077 50.000 0.00 0.00 0.00 5.69
600 619 2.067365 AAATCCAATACTTCCCCCGC 57.933 50.000 0.00 0.00 0.00 6.13
601 620 6.724893 AATAAAAATCCAATACTTCCCCCG 57.275 37.500 0.00 0.00 0.00 5.73
602 621 8.319057 AGAAATAAAAATCCAATACTTCCCCC 57.681 34.615 0.00 0.00 0.00 5.40
646 665 3.603965 ATCCCATATACCCCGCAAAAA 57.396 42.857 0.00 0.00 0.00 1.94
647 666 3.603965 AATCCCATATACCCCGCAAAA 57.396 42.857 0.00 0.00 0.00 2.44
648 667 3.226777 CAAATCCCATATACCCCGCAAA 58.773 45.455 0.00 0.00 0.00 3.68
649 668 2.175931 ACAAATCCCATATACCCCGCAA 59.824 45.455 0.00 0.00 0.00 4.85
650 669 1.777878 ACAAATCCCATATACCCCGCA 59.222 47.619 0.00 0.00 0.00 5.69
651 670 2.579410 ACAAATCCCATATACCCCGC 57.421 50.000 0.00 0.00 0.00 6.13
652 671 4.725490 AGAAACAAATCCCATATACCCCG 58.275 43.478 0.00 0.00 0.00 5.73
653 672 6.890268 GGATAGAAACAAATCCCATATACCCC 59.110 42.308 0.00 0.00 36.44 4.95
654 673 7.699878 AGGATAGAAACAAATCCCATATACCC 58.300 38.462 0.00 0.00 42.32 3.69
655 674 9.232473 GAAGGATAGAAACAAATCCCATATACC 57.768 37.037 0.00 0.00 42.32 2.73
656 675 9.793259 TGAAGGATAGAAACAAATCCCATATAC 57.207 33.333 0.00 0.00 42.32 1.47
657 676 9.793259 GTGAAGGATAGAAACAAATCCCATATA 57.207 33.333 0.00 0.00 42.32 0.86
658 677 8.281531 TGTGAAGGATAGAAACAAATCCCATAT 58.718 33.333 0.00 0.00 42.32 1.78
659 678 7.638444 TGTGAAGGATAGAAACAAATCCCATA 58.362 34.615 0.00 0.00 42.32 2.74
660 679 6.493166 TGTGAAGGATAGAAACAAATCCCAT 58.507 36.000 0.00 0.00 42.32 4.00
661 680 5.886609 TGTGAAGGATAGAAACAAATCCCA 58.113 37.500 0.00 0.00 42.32 4.37
662 681 7.410120 AATGTGAAGGATAGAAACAAATCCC 57.590 36.000 0.00 0.00 42.32 3.85
726 745 3.561143 TGGTACACAGCACAGGATTTTT 58.439 40.909 0.00 0.00 0.00 1.94
727 746 3.149196 CTGGTACACAGCACAGGATTTT 58.851 45.455 0.00 0.00 40.97 1.82
728 747 2.783135 CTGGTACACAGCACAGGATTT 58.217 47.619 0.00 0.00 40.97 2.17
739 758 1.003118 GGCATGTTCCTCTGGTACACA 59.997 52.381 0.00 0.00 35.91 3.72
740 759 1.003118 TGGCATGTTCCTCTGGTACAC 59.997 52.381 0.00 0.00 35.91 2.90
741 760 1.357137 TGGCATGTTCCTCTGGTACA 58.643 50.000 0.00 0.00 37.39 2.90
742 761 2.717639 ATGGCATGTTCCTCTGGTAC 57.282 50.000 0.00 0.00 0.00 3.34
744 763 2.610438 AAATGGCATGTTCCTCTGGT 57.390 45.000 0.00 0.00 0.00 4.00
745 764 5.603170 AATAAAATGGCATGTTCCTCTGG 57.397 39.130 6.08 0.00 0.00 3.86
746 765 6.044682 GGAAATAAAATGGCATGTTCCTCTG 58.955 40.000 6.08 0.00 32.14 3.35
747 766 5.960202 AGGAAATAAAATGGCATGTTCCTCT 59.040 36.000 6.08 0.00 39.27 3.69
748 767 6.044682 CAGGAAATAAAATGGCATGTTCCTC 58.955 40.000 18.90 10.38 41.05 3.71
749 768 5.484998 ACAGGAAATAAAATGGCATGTTCCT 59.515 36.000 6.08 13.45 43.19 3.36
750 769 5.733676 ACAGGAAATAAAATGGCATGTTCC 58.266 37.500 6.08 11.58 34.52 3.62
752 771 9.985730 CATATACAGGAAATAAAATGGCATGTT 57.014 29.630 8.20 8.20 0.00 2.71
780 820 9.451002 CCTTCGTAGAATAGGAGTATCATAGAA 57.549 37.037 0.00 0.00 45.90 2.10
781 821 8.823794 TCCTTCGTAGAATAGGAGTATCATAGA 58.176 37.037 0.00 0.00 45.90 1.98
790 833 5.508320 GCCTTCTTCCTTCGTAGAATAGGAG 60.508 48.000 0.00 3.53 43.53 3.69
792 835 4.501743 GGCCTTCTTCCTTCGTAGAATAGG 60.502 50.000 0.00 0.00 45.90 2.57
797 840 1.825474 CAGGCCTTCTTCCTTCGTAGA 59.175 52.381 0.00 0.00 0.00 2.59
800 843 0.610687 CTCAGGCCTTCTTCCTTCGT 59.389 55.000 0.00 0.00 0.00 3.85
801 844 0.742635 GCTCAGGCCTTCTTCCTTCG 60.743 60.000 0.00 0.00 0.00 3.79
805 848 1.271597 TGAAAGCTCAGGCCTTCTTCC 60.272 52.381 0.00 0.00 39.07 3.46
806 849 1.809547 GTGAAAGCTCAGGCCTTCTTC 59.190 52.381 0.00 2.18 39.07 2.87
810 853 1.302832 CGGTGAAAGCTCAGGCCTT 60.303 57.895 0.00 0.00 39.73 4.35
817 860 0.670546 TGCTGCTACGGTGAAAGCTC 60.671 55.000 0.00 1.67 39.53 4.09
819 862 0.375106 GATGCTGCTACGGTGAAAGC 59.625 55.000 0.00 0.00 39.25 3.51
912 968 0.380378 TGTGGTGTTTTGCTCTTCGC 59.620 50.000 0.00 0.00 39.77 4.70
916 972 2.664402 ATCCTGTGGTGTTTTGCTCT 57.336 45.000 0.00 0.00 0.00 4.09
943 999 5.228945 TGTGATGATGATGATGATCTGCT 57.771 39.130 0.00 0.00 0.00 4.24
944 1000 6.502136 AATGTGATGATGATGATGATCTGC 57.498 37.500 0.00 0.00 0.00 4.26
945 1001 8.169268 CGTTAATGTGATGATGATGATGATCTG 58.831 37.037 0.00 0.00 0.00 2.90
946 1002 7.148457 GCGTTAATGTGATGATGATGATGATCT 60.148 37.037 0.00 0.00 0.00 2.75
947 1003 6.959871 GCGTTAATGTGATGATGATGATGATC 59.040 38.462 0.00 0.00 0.00 2.92
948 1004 6.401796 CGCGTTAATGTGATGATGATGATGAT 60.402 38.462 1.82 0.00 0.00 2.45
949 1005 5.107375 CGCGTTAATGTGATGATGATGATGA 60.107 40.000 1.82 0.00 0.00 2.92
950 1006 5.077424 CGCGTTAATGTGATGATGATGATG 58.923 41.667 1.82 0.00 0.00 3.07
976 1032 0.573055 GCTTCGCGTTTAGCTAGCTC 59.427 55.000 23.26 6.13 43.38 4.09
1472 1537 0.676151 GAGGTAGTCCGTCCACGACT 60.676 60.000 0.00 5.25 43.02 4.18
1661 1738 2.164422 GTGTGGGGTACGGAACTACTAC 59.836 54.545 0.00 0.00 0.00 2.73
1662 1739 2.041620 AGTGTGGGGTACGGAACTACTA 59.958 50.000 0.00 0.00 0.00 1.82
1663 1740 1.203100 AGTGTGGGGTACGGAACTACT 60.203 52.381 0.00 0.00 0.00 2.57
1670 1747 1.002624 ATTGCAGTGTGGGGTACGG 60.003 57.895 0.00 0.00 0.00 4.02
1690 1767 6.404074 CCAAAACAAGTTAGCCATTTTTGCAA 60.404 34.615 0.00 0.00 34.20 4.08
1700 1777 2.863740 GTTGCACCAAAACAAGTTAGCC 59.136 45.455 0.00 0.00 0.00 3.93
1739 1818 4.166011 GTGATTCCACGCCGCAGC 62.166 66.667 0.00 0.00 33.10 5.25
1747 1826 5.062308 GTGTAGAAGATGAACGTGATTCCAC 59.938 44.000 0.00 0.00 36.36 4.02
1748 1827 5.168569 GTGTAGAAGATGAACGTGATTCCA 58.831 41.667 0.00 0.00 36.36 3.53
1749 1828 5.062308 GTGTGTAGAAGATGAACGTGATTCC 59.938 44.000 0.00 0.00 36.36 3.01
1750 1829 5.633601 TGTGTGTAGAAGATGAACGTGATTC 59.366 40.000 0.00 0.00 37.88 2.52
1751 1830 5.405571 GTGTGTGTAGAAGATGAACGTGATT 59.594 40.000 0.00 0.00 0.00 2.57
1752 1831 4.923871 GTGTGTGTAGAAGATGAACGTGAT 59.076 41.667 0.00 0.00 0.00 3.06
1753 1832 4.295870 GTGTGTGTAGAAGATGAACGTGA 58.704 43.478 0.00 0.00 0.00 4.35
1754 1833 3.119628 CGTGTGTGTAGAAGATGAACGTG 59.880 47.826 0.00 0.00 0.00 4.49
1755 1834 3.305964 CGTGTGTGTAGAAGATGAACGT 58.694 45.455 0.00 0.00 0.00 3.99
1840 1923 9.871238 AACTACCACTATCAATTTACACTGTAG 57.129 33.333 0.00 0.00 0.00 2.74
2063 2169 3.432051 ATCTCGCCGTAGCCTGCAC 62.432 63.158 0.00 0.00 34.57 4.57
2064 2170 3.147595 ATCTCGCCGTAGCCTGCA 61.148 61.111 0.00 0.00 34.57 4.41
2065 2171 2.659897 CATCTCGCCGTAGCCTGC 60.660 66.667 0.00 0.00 34.57 4.85
2083 2189 2.375766 GCGACTTGGAGCACGTCAG 61.376 63.158 0.00 0.00 33.16 3.51
2233 2339 2.032071 CTGGTCGGCGGAAAAGGT 59.968 61.111 7.21 0.00 0.00 3.50
2541 2647 2.669229 TCCAGGTACGACGCGTCA 60.669 61.111 35.71 17.48 41.54 4.35
2721 2827 0.675837 TGAGTGGGTAGACGACGAGG 60.676 60.000 0.00 0.00 32.45 4.63
2736 2842 3.250040 GTGCGTACTTGGATTTGTTGAGT 59.750 43.478 0.00 0.00 0.00 3.41
2756 2862 2.505498 GCACGATGGACGCGTAGTG 61.505 63.158 13.97 17.90 46.94 2.74
2757 2863 2.202570 GCACGATGGACGCGTAGT 60.203 61.111 13.97 4.74 46.94 2.73
2758 2864 1.588932 ATGCACGATGGACGCGTAG 60.589 57.895 13.97 4.02 46.94 3.51
2802 2908 4.090066 CAGTGTCAGTTAAGTGCGTGATAC 59.910 45.833 5.35 0.00 32.80 2.24
2836 2955 1.666872 CGTCGTCCCACCTGAAACC 60.667 63.158 0.00 0.00 0.00 3.27
3039 3158 4.389576 CACTTGCCGCCGAAGTGC 62.390 66.667 9.84 0.00 42.78 4.40
3237 3379 7.248437 TCGACAGAGCATATTATTACCGTATG 58.752 38.462 0.00 0.00 0.00 2.39
3238 3380 7.387119 TCGACAGAGCATATTATTACCGTAT 57.613 36.000 0.00 0.00 0.00 3.06
3263 3405 3.367703 CGGGTACACGTGGAGATTAAAGT 60.368 47.826 21.57 0.00 0.00 2.66
3277 3419 5.965922 ACTACTAATTGGTAACGGGTACAC 58.034 41.667 5.44 0.00 42.51 2.90
3304 3446 4.027572 TGTTCACACTTTTGCTTACAGC 57.972 40.909 0.00 0.00 42.82 4.40
3326 3468 2.770164 AGTGTACATTGGTGGAGCTC 57.230 50.000 4.71 4.71 0.00 4.09
3375 3517 2.003196 CGAAAGTCCTCTTCTGCTCC 57.997 55.000 0.00 0.00 32.90 4.70
3393 3535 3.354089 AACAAAGGAACAAGACATGCG 57.646 42.857 0.00 0.00 0.00 4.73
3411 3553 7.796958 ATCTTATAAAAGCGCTCAAACAAAC 57.203 32.000 12.06 0.00 32.36 2.93
3423 3565 8.678199 AGTAAGTTGGAGCAATCTTATAAAAGC 58.322 33.333 0.00 0.00 32.36 3.51
3446 3588 6.167752 TCTTATACCCCCTAGGAGGTAAGTA 58.832 44.000 24.65 11.82 41.82 2.24
3447 3589 4.993534 TCTTATACCCCCTAGGAGGTAAGT 59.006 45.833 24.65 12.80 41.82 2.24
3448 3590 5.518725 CCTCTTATACCCCCTAGGAGGTAAG 60.519 52.000 24.65 19.73 41.82 2.34
3466 3608 5.077564 TGCTCAGACTAAACACTCCTCTTA 58.922 41.667 0.00 0.00 0.00 2.10
3467 3609 3.898123 TGCTCAGACTAAACACTCCTCTT 59.102 43.478 0.00 0.00 0.00 2.85
3468 3610 3.501349 TGCTCAGACTAAACACTCCTCT 58.499 45.455 0.00 0.00 0.00 3.69
3469 3611 3.944055 TGCTCAGACTAAACACTCCTC 57.056 47.619 0.00 0.00 0.00 3.71
3470 3612 4.323104 GGATTGCTCAGACTAAACACTCCT 60.323 45.833 0.00 0.00 29.96 3.69
3586 3761 9.014297 ACAATTAGTCCACTAAAAATCTTCCAG 57.986 33.333 3.31 0.00 41.27 3.86
3670 4317 2.359531 AGATACTTCTAGCTGCCACGAC 59.640 50.000 0.00 0.00 0.00 4.34
3698 4345 0.746063 TGGAGGCTGCACAACAAAAG 59.254 50.000 3.93 0.00 0.00 2.27
3747 4407 5.481824 TGGATGGATGTCATATGAGACTACC 59.518 44.000 5.42 10.07 39.27 3.18
3886 4547 7.455641 TCTACTTTTGGTGTTTGACTTTGAA 57.544 32.000 0.00 0.00 0.00 2.69
3924 4593 7.512130 TGCTATGAATAGGACACATCAGAATT 58.488 34.615 0.00 0.00 0.00 2.17
3957 4626 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
3982 4651 9.575868 TGTGGTAGTCCATTTAAAATGTCTAAA 57.424 29.630 0.00 0.00 46.20 1.85
3983 4652 9.747898 ATGTGGTAGTCCATTTAAAATGTCTAA 57.252 29.630 0.00 0.00 46.20 2.10
3984 4653 9.173021 CATGTGGTAGTCCATTTAAAATGTCTA 57.827 33.333 0.00 0.00 46.20 2.59
3985 4654 7.362920 GCATGTGGTAGTCCATTTAAAATGTCT 60.363 37.037 0.00 0.00 46.20 3.41
3986 4655 6.751888 GCATGTGGTAGTCCATTTAAAATGTC 59.248 38.462 0.00 0.00 46.20 3.06
3987 4656 6.624861 CGCATGTGGTAGTCCATTTAAAATGT 60.625 38.462 0.00 0.00 46.20 2.71
3988 4657 5.743398 CGCATGTGGTAGTCCATTTAAAATG 59.257 40.000 0.00 0.00 46.20 2.32
3989 4658 5.163561 CCGCATGTGGTAGTCCATTTAAAAT 60.164 40.000 17.59 0.00 46.20 1.82
3990 4659 4.156922 CCGCATGTGGTAGTCCATTTAAAA 59.843 41.667 17.59 0.00 46.20 1.52
3991 4660 3.692101 CCGCATGTGGTAGTCCATTTAAA 59.308 43.478 17.59 0.00 46.20 1.52
3992 4661 3.055021 TCCGCATGTGGTAGTCCATTTAA 60.055 43.478 24.28 0.00 46.20 1.52
3993 4662 2.502130 TCCGCATGTGGTAGTCCATTTA 59.498 45.455 24.28 0.00 46.20 1.40
3994 4663 1.280710 TCCGCATGTGGTAGTCCATTT 59.719 47.619 24.28 0.00 46.20 2.32
3995 4664 0.908910 TCCGCATGTGGTAGTCCATT 59.091 50.000 24.28 0.00 46.20 3.16
3996 4665 1.131638 ATCCGCATGTGGTAGTCCAT 58.868 50.000 24.28 7.12 46.20 3.41
3997 4666 0.177836 CATCCGCATGTGGTAGTCCA 59.822 55.000 24.28 4.84 42.05 4.02
3998 4667 0.178068 ACATCCGCATGTGGTAGTCC 59.822 55.000 24.28 0.00 42.05 3.85
3999 4668 2.882927 TACATCCGCATGTGGTAGTC 57.117 50.000 24.28 0.00 43.54 2.59
4000 4669 5.949952 TCTATATACATCCGCATGTGGTAGT 59.050 40.000 24.28 23.12 43.54 2.73
4001 4670 6.127730 TGTCTATATACATCCGCATGTGGTAG 60.128 42.308 24.28 19.08 43.54 3.18
4002 4671 5.712917 TGTCTATATACATCCGCATGTGGTA 59.287 40.000 24.28 10.63 43.54 3.25
4003 4672 4.526650 TGTCTATATACATCCGCATGTGGT 59.473 41.667 24.28 8.62 43.54 4.16
4004 4673 5.072040 TGTCTATATACATCCGCATGTGG 57.928 43.478 19.75 19.75 43.54 4.17
4005 4674 8.877808 AATATGTCTATATACATCCGCATGTG 57.122 34.615 1.14 0.00 43.54 3.21
4006 4675 9.890629 AAAATATGTCTATATACATCCGCATGT 57.109 29.630 7.00 0.00 45.73 3.21
4036 4705 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4037 4706 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4038 4707 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4039 4708 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4040 4709 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4041 4710 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4042 4711 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4043 4712 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4044 4713 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4045 4714 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4046 4715 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4047 4716 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4048 4717 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4049 4718 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4050 4719 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4051 4720 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4052 4721 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4053 4722 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4054 4723 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4055 4724 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4056 4725 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4057 4726 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4058 4727 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4059 4728 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4060 4729 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4062 4731 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4063 4732 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4064 4733 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4065 4734 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4066 4735 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4067 4736 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4068 4737 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4069 4738 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4070 4739 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4083 4752 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4084 4753 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4085 4754 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4086 4755 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4087 4756 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
4088 4757 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
4089 4758 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
4090 4759 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
4091 4760 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
4092 4761 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
4093 4762 7.985752 ACTACTTCCTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
4094 4763 8.087303 ACTACTTCCTCCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
4095 4764 7.672122 ACTACTTCCTCCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
4096 4765 8.953223 ATACTACTTCCTCCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
4097 4766 8.773033 AATACTACTTCCTCCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
4098 4767 7.672122 AATACTACTTCCTCCGTTCCTAAAT 57.328 36.000 0.00 0.00 0.00 1.40
4099 4768 7.486407 AAATACTACTTCCTCCGTTCCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
4100 4769 7.486407 AAAATACTACTTCCTCCGTTCCTAA 57.514 36.000 0.00 0.00 0.00 2.69
4101 4770 7.178983 TCAAAAATACTACTTCCTCCGTTCCTA 59.821 37.037 0.00 0.00 0.00 2.94
4102 4771 6.013984 TCAAAAATACTACTTCCTCCGTTCCT 60.014 38.462 0.00 0.00 0.00 3.36
4103 4772 6.168389 TCAAAAATACTACTTCCTCCGTTCC 58.832 40.000 0.00 0.00 0.00 3.62
4104 4773 7.662604 TTCAAAAATACTACTTCCTCCGTTC 57.337 36.000 0.00 0.00 0.00 3.95
4105 4774 8.347771 GTTTTCAAAAATACTACTTCCTCCGTT 58.652 33.333 0.00 0.00 0.00 4.44
4106 4775 7.718314 AGTTTTCAAAAATACTACTTCCTCCGT 59.282 33.333 0.00 0.00 0.00 4.69
4107 4776 8.095937 AGTTTTCAAAAATACTACTTCCTCCG 57.904 34.615 0.00 0.00 0.00 4.63
4108 4777 9.063615 TGAGTTTTCAAAAATACTACTTCCTCC 57.936 33.333 0.00 0.00 28.32 4.30
4109 4778 9.880064 GTGAGTTTTCAAAAATACTACTTCCTC 57.120 33.333 0.00 0.00 34.49 3.71
4110 4779 9.403583 TGTGAGTTTTCAAAAATACTACTTCCT 57.596 29.630 0.00 0.00 34.49 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.