>input_sequence_37217
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---------------ATGGCGATCGTTTACGTGCTTCTGGTGGCGCTGATCACCGCGGCGTCCCATGCGCCGCACGGCGC
GCACGGCCAGACGTGGCACGGCGACCTCGCGGCGCTCGCCGCCGCCGGCAAGCTCCGCAGCGACCCCAACGCCACCCTGG
CGGCCTCCACGGACTTCGGCAACATCACGGCGGCGCTCCCGGCGGCCGTGCTGTTCCCGTCGTCCCCGGCGGACGTGGCT
GCGCTCCTCCGCGCCGCGCACACCACCGTGGCGTGGCCGTACACCATCTCGTTCCGCGGCCGCGGCCACTCCGTGATGGG
GCAGGCCTTGGCCCTCGGCGGCGTGGTCGTCGACATGCCGTCCCTGGGCGGCCCG---------TCCTCCGCGGCGCGCA
TCAACGTGTCGGCGGACGGCCAGTACGTCGACGCCGGCGGCGAGCAGATGTGGATCGACGTGCTGCGGGCGACGCTGGAG
CGCGGCGTGGCGCCGCAGTCGTGGACGGACTACCTCCACCTCACCGTCGGCGGCACGCTCTCGAACGCCGGCATCAGTGG
CCAGACCTACCGGCACGGCCCCCAGATTTCCAACGTCCTGGAGCTGGACGTCATCACCG----GTACGTACGCGCGCACG
ATATGGGC--------ACCAGCATGCACCACGCTCACAAGCAACTCCCTCTCGCAAAGTAGTAGTTCCGTACCCCACACT
GCAATGTTGCAAAAATGGC--TAACTTGTTTTGGTGCAACTCGCAACCCGTAATCCGGCTGCGGCGTGGAATCACGTTCA
TCTTCT----ACACACACGGTAGTCTAAAAAAGGTGCCGGTAAAAAAATGGCAGTGAGTACTAATTAATGGATGGTTTAA
TAC------------TACAGTGTAAATTGATAGTGGTAGTTACTACAGCTGACCAGCTGG----CGGCTGCTGGGCCGGC
CGGGCAGCCGGCGTCGACGTCTTTCAAATTTCAATAGATTTGCCGGCGGCCAACAACACGTTGACTTTGACATTTCCCCT
CTGTGTTAAATTACT---CCATTACTCTAACCGGCCC----GCATGCACCTTTGCGTTGACACGGTGCAATTAACGCGCG
TGCCGTGCGTGCAGGCTACGGCGAGATGCTGACGTGCTCCAAGTCGCTCAACGCGGACCTGTTCGACGCGGTACTGGGCG
GGCTGGGCCAGTTCGGCGTGATCGTGCGCGCACGGATCGCGCTCGAGCCGGCGCCGACGCGGGCGCGGTGGGCGCGGCTC
GTCTACACCGACTTCGCCACCTTTTCCGCCGACCAGGAGCGGCTCGTCGCGCCCGGGCCCGACGGCGCGTTCGGGCCGAT
GAGCTACCTCGAGGGCGCGGTCTACGTGAACCACAGCCTGGCCGCCGGGCTGAAGAACTCGGGCGGGTTCTTCACCGACG
CCGACGTCGCCAGGATCGTCGCCGTCGCCGCGGCGAGGAACGCCACCACCGTGTACGTCATCGAGGCGACGCTCAACTAC
GACAACGCCACGGCCGCGTCCGTGGACCAGGAGCTCAGTTCGGTGGTGGCGACGCTGAGGCACGAGGAGGGGCTCGCGTT
CGTGCGTGACGCGTCGTACCTGGAGTTCCTGGACCGGGTGCACGGCGAGGAGGTGGCGCTGGACAAGATCGGGCTGTGGC
GCGTCCCGCACCCCTGGCTCAACGTGCTCGTGCCCCGCTCCCGCATCGCCGACTTCGACAGCGGCGTCTTCAAGGGCATC
CTCCAGGGCACCGACATCGCCGGGCCCCTCGTCGTCTACCCACTCAACAAATCCAAGTACGCACTACGCGTCCATCGTGC
ATGCATGCATGCGATCCTGCATGGTATGTA-------TCACGCACTTAACTGACA------CTGGCTCGGTCGTGGTTTC
AGGTGGGACGACGGCATGTCGGCGGTGACGCCGGCGGAGGAGGTGTTCTACGCGGTGTCGCTGCTCTTCTCGTCGGTGGC
CAACGACCTGAAGCGGCTGGAGGCGCAGAACCAGAAGATACTGCGGTTCTGCGACCTCGCCGGGATAGGGTACAAGGAGT
ACCTGGCGCACTACACGGCCCACGGCGACTGGGTCCGGCACTTCGGCGGCAAGTGGCAGCGCTTCGTGGAGATGAAGGAC
AAGTACGACCCCAAGAGGCTGCTCTCCCCTGGCCAAGACATCTTCAACCTACTCCTTTGA--------------------
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>chr3B_1_TraesCS3B01G128700
TTATAATGGAGAGAGTATGTCACAATCAACTAAATTTTATTATTGATATTTTCTCAAGCAGTGCTTTAAATATTGAAAAT
CTGATTAAAATGACATGAAATCAATGGCAATTTGCCAAATTAAATTCTAGGATATTTTAGCCAAGTGCTAAGCAACTTTT
AAAGATAGTAGGTGGAGTAATGAAAACTTGACCTTTTTTTTGGTCCAATTTGTTGCCATTTCCATCAAACGCTGTTTATA
AA--TATGCCAAGACGAGAAAGAAGTGACGTCAAACATAAAATATCCAACTCACCACGTGGCAAGAGC-TTGCTGTCCAT
GGTGGCCAAATGTTTAGACAGCCGGCCTGCAGTACCGGTTACACACACACACAAAAAAATCCATTTTTTTAGGGGTAAAA
AAGTCCAATCTGATCAGTGCAATACACACAACTACACGAGCACACACA---GCACACGTAGGTCACAAACAAACACGTAT
TTTTCCATCTCTGGTCAAACAATAAAAAAGGCAATAAATAATTATATAGGAATTCTATGATTCTT------------ATA
TAAAATTTTCCTTTGAAGTTCCCTGATTTGAAGTATTGGAATTTTTTATTTTTTTTTTGCGGGGGAAGTATTGGATTTTT
ATTTCTATATGGGATTTGTTTCTTTTTTTGCGGGGTATATGGGATTTGTTTCTATCCTTCACATTTCAGAAGAAGAAAAG
AATAGCTTATACCTTACCAAACAAAAAAATCCTGTGCTGTGTACCAGAGGA---------------------ACATGCCA
TTTTATTTCCTGTATATGATT---CTATGATACTCCTATTCTACGAAGGAAGAAGGCCTGAGCTTTCA---CCGTAGCAG
CATCTCAGAGAATTAACGCATACGTTTATGTTGCACCGGCCGATCCGTCTCTCCCC----------CTATATATACGGGG
TGCAACTGCGAAGAGCAAAACACCACAGGATAATTACCAGCAGATCATCATCATCATCACATTAACGCGCCGAGCTAGCT
AAACGCGAAGCGCTAATGGCGATCGTTTACGTGCTTCTGGTGGCGCTGATCACCGCGGCGTCCCATGCGCCGCACGGCGC
GCACGGCCAGACGTGGCACGGCGACCTCGCGGCGCTCGCCGCCGCCGGCAAGCTCCGCAGCGACCCCAACGCCACCCTGG
CGGCCTCCACGGACTTCGGCAACATCACGGCGGCGCTCCCGGCGGCCGTGCTGTTCCCGTCGTCCCCGGCGGACGTGGCT
GCGCTCCTCCGCGCCGCGCACACCACCGTGGCGTGGCCGTACACCATCTCGTTCCGCGGCCGCGGCCACTCCGTGATGGG
GCAGGCCTTGGCCCTCGGCGGCGTGGTCGTCGACATGCCGTCCCTGGGCGGCCCG---------TCCTCCGCGGCGCGCA
TCAACGTGTCGGCGGACGGCCAGTACGTCGACGCCGGCGGCGAGCAGATGTGGATCGACGTGCTGCGGGCGACGCTGGAG
CGCGGCGTGGCGCCGCAGTCGTGGACGGACTACCTCCACCTCACCGTCGGCGGCACGCTCTCGAACGCCGGCATCAGTGG
CCAGACCTACCGGCACGGCCCCCAGATTTCCAACGTCCTGGAGCTGGACGTCATCACCG----GTACGTACGCGCGCACG
ATATGGGC--------ACCAGCATGCACCACGCTCACAAGCAACTCCCTCTCGCAAAGTAGTAGTTCCGTACCCCACACT
GCAATGTTGCAAAAATGGC--TAACTTGTTTTGGTGCAACTCGCAACCCGTAATCCGGCTGCGGCGTGGAATCACGTTCA
TCTTCT----ACACACACGGTAGTCTAAAAAAGGTGCCGGTAAAAAAATGGCAGTGAGTACTAATTAATGGATGGTTTAA
TAC------------TACAGTGTAAATTGATAGTGGTAGTTACTACAGCTGACCAGCTGG----CGGCTGCTGGGCCGGC
CGGGCAGCCGGCGTCGACGTCTTTCAAATTTCAATAGATTTGCCGGCGGCCAACAACACGTTGACTTTGACATTTCCCCT
CTGTGTTAAATTACT---CCATTACTCTAACCGGCCC----GCATGCACCTTTGCGTTGACACGGTGCAATTAACGCGCG
TGCCGTGCGTGCAGGCTACGGCGAGATGCTGACGTGCTCCAAGTCGCTCAACGCGGACCTGTTCGACGCGGTACTGGGCG
GGCTGGGCCAGTTCGGCGTGATCGTGCGCGCACGGATCGCGCTCGAGCCGGCGCCGACGCGGGCGCGGTGGGCGCGGCTC
GTCTACACCGACTTCGCCACCTTTTCCGCCGACCAGGAGCGGCTCGTCGCGCCCGGGCCCGACGGCGCGTTCGGGCCGAT
GAGCTACCTCGAGGGCGCGGTCTACGTGAACCACAGCCTGGCCGCCGGGCTGAAGAACTCGGGCGGGTTCTTCACCGACG
CCGACGTCGCCAGGATCGTCGCCGTCGCCGCGGCGAGGAACGCCACCACCGTGTACGTCATCGAGGCGACGCTCAACTAC
GACAACGCCACGGCCGCGTCCGTGGACCAGGAGCTCAGTTCGGTGGTGGCGACGCTGAGGCACGAGGAGGGGCTCGCGTT
CGTGCGTGACGCGTCGTACCTGGAGTTCCTGGACCGGGTGCACGGCGAGGAGGTGGCGCTGGACAAGATCGGGCTGTGGC
GCGTCCCGCACCCCTGGCTCAACGTGCTCGTGCCCCGCTCCCGCATCGCCGACTTCGACAGCGGCGTCTTCAAGGGCATC
CTCCAGGGCACCGACATCGCCGGGCCCCTCGTCGTCTACCCACTCAACAAATCCAAGTACGCACTACGCGTCCATCGTGC
ATGCATGCATGCGATCCTGCATGGTATGTA-------TCACGCACTTAACTGACA------CTGGCTCGGTCGTGGTTTC
AGGTGGGACGACGGCATGTCGGCGGTGACGCCGGCGGAGGAGGTGTTCTACGCGGTGTCGCTGCTCTTCTCGTCGGTGGC
CAACGACCTGAAGCGGCTGGAGGCGCAGAACCAGAAGATACTGCGGTTCTGCGACCTCGCCGGGATAGGGTACAAGGAGT
ACCTGGCGCACTACACGGCCCACGGCGACTGGGTCCGGCACTTCGGCGGCAAGTGGCAGCGCTTCGTGGAGATGAAGGAC
AAGTACGACCCCAAGAGGCTGCTCTCCCCTGGCCAAGACATCTTCAACCTACTCCTTTGAGTAGATGCAA-T-----TAG
TTGTTACTACTTGTGGATTAAC--GTGTGGACAGTAACACAGCAGTTTAACTTTAATTTCCCGTTTTTACTCATG-----
----------TAGTAGGTCATACGGTAATAATATGCTCTGTCGAACTTTAATCTCCACGTGTACCCGTTACCAATTAGTA
GTAGTGCTGTAAGCAAAAGTGTGAACAGAGCTCCACCAATGTACACTTTGCCAGATAAATGTTTCATTTCAGCTCAGGAG
CAGAAGAGGACTTTCGCATGTCTTGTTCCTTTGTTTGTTTGAGCGCTTTTATAAGATTGCTCCAACTTACTTACCTCCTA
GGGGGTATAAGAGGAGTGTTTAGTCTGAGCAATCCATGACTGATCAAGG---GTTTTGGCTAAATGAGC----TTCCACT
TTCACTGCAAAAAAT-GAGCATCCACTTAAGGCAAGTTATTT-------------------------TGATGTGCTAAAA
CTGGAAGATTTTTAGTGGAC-TAATTGTCATTTTCTACTATAAT------------------------------------
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------------ATATTAGAGATCTTC-----------------------CGCACTTTATTTCATACCATGAACGGGTCG
TGGCAGCTAGAAGTATCTTTGTGCCTTTTGTTGTGCAGCCTCCA-------------AAGCTAAGATATCGTGTTTGATA
ATGTTTGGTAGTCTCATATGACATCCATCCAGACCAGGGATTCGTACTC-AAAGCATCTCATGTTTGAACATATCATATT
TGTGATGAATTGTGTACATGACGTCTACCACGTCCATGTGACATGTCTACCCCGTCAAGCTCACTATTCAAAGTCAAACA
CCAAAAGTAGATACATGAAAAG--------CAAATTCTGATGTGTCCTATTCATAGCAAACTAGTCCCTCCATTCCTAAA
TATTTGTCTTTTTAGACATTTTAAATGGACTACCACATGCGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCAT
TTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGAAGTAGTATTTTTGAAAAC
TCACAAATTT
>chr3D_177
GTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATGAAAACTTGATCTCTTTT---GTCCAATCTGTTGCCATTTCCATCAAACGCTGTTTATA
AATATATGTCAAGACGAGAAAGAAGTGACATCAAACCTAAAATATCCAGCTCACCACGTGGCGAGAGCTTTGCTGTCCAT
GGTGGTCAAATGTTTAGAGAGTCGGCCTGCAGTACCGGTTACACACACACACACACACACACAAAAAAAAGGA-------
---TCCAATATTATCAGTGCAGTACACACAACTACACGAGCACACAGATTGGCACACGTAGATCACAAACAAGCACGTAT
TTTTCCCC--CTGGTCAATCAATAAACAAGGCGATAAACAATGAGCCCTTCCTTTGATATAGAGAAATCTTATAGGAATA
CAAAAATTTCCTTTGAAGACTTT-----------------------------------------GAAGAATTGGATTCCT
ATTTTTGTGTA------------------------------GGATTTGTTTCTATCCTTCACATTTCGAAGGAATAAAAA
TAGCTCAGAGCTAACAGAAAAATTCCTACTTTATGAAACAATTGACATAATTTTTTCTATAGGAATTAATATACATACCA
TTTCATTTATCATGACTTCCCTAACTATGATATTACTATCCTGTGAAAAAAGGAGGCCTCAACTTTCACCGCCGTAGCAG
CATCTTGGAGAATTAACGCATACGTTTATGTTGCACCGGCCGATCCATCTTCCCCCCGTAGGCCGGCTATATATACGGGG
TGCAACTCCGAGGAGCAAAACACCACAGGATAATTACCCAGCAG--ATCATCATCATCACATTAACGCGCCTAGCTAGCT
AAACGCGAAGCGCTAATGGCGATCGTTTACGTGCTTCTGGTGGCGCTGATCACCGCGGCGTCTCATGCGCCGGACGGCGC
GCACGGCCAGACGTGGCACGGCGACCTCGCCGCGCTCGCCGCGGCCGGCAGGCTCCGCAGCGACCCAAACGCCACCCTGG
CGGCCTCCACGGACTTCGGCAACATCACGGCGGCGCTCCCGGCGGCCGTGCTGTTCCCGTCGTCCCCGGCGGACGTGGCC
GCGCTCCTCCGCGCCGCGCACACCACCGCGGCATGGCCCTACACCATCTCGTTCCGCGGCCGCGGCCACTCCGTGATGGG
GCAGGCCTTGGCCCCGGGCGGCGTGGTCGTCGACATGCCCTCCCTGGGCGGCCCG---------TCCTCCGCGGCGCGCA
TCAACGTGTCGGCGGACGGCCAGTACGTGGACGCCGGCGGCGAGCAGATGTGGATCGACGTGCTGCGGGCGACGCTGGAG
CGCGGCGTCGCGCCGCGGTCGTGGACGGACTACCTCCACCTCACCGTCGGCGGCACGCTCTCGAACGCCGGCATCAGCGG
CCAGACCTACCGGCACGGCCCCCAGATTTCCAACGCCCTGGAGCTGGACGTCATCACCG----GTACGTACGCGCGCACG
ATATGGGCAAGCACGCACCAGCATGCACCACGCTCACAAGCAACTCCCTCTCGCAA----GTAGTTACGTACCCCACACT
GCAATGCTGCAAAAATAGCTATAACTTGTTTCGGTGCAACTCGCAACT--------------------------CGTTCA
TCTTCT----ACGCACACGGCAGTCTC-AAAAGGTGCCGGTAAAAAAATGTCATTGAGTACTAATTAATGGATGGTTTAA
TAGTAATTAATGGAGTACAGTGTAAATTGATAGTGGTAGTTACTACAGCTGACCAGCTGG----CGGCTGCTGGGCCGGC
CGGGCAGCCGGCGTCGACGTCTTTCAAATTTCAATAGATTTGCCGGCGGCCAACAACACGTTGACTTTGACATTTCCCCT
CTGCGTTAAATTACT---CCATTACTCTACCCGGCCCGGCCGCATGCACCTTTGCGTTGACACGGTGCAATTAACGCGCG
TG---------CAGGCTACGGCGAGATGGTGACGTGCTCCAAGTCGCTCAACGCGGACCTGTTCGATGCGGCGCTGGGCG
GGCTGGGCCAGTTCGGCGTGATCGTGCGCGCCCGGATCGCGCTCGAGCCGGCGCCGACGCGGGCGCGGTGGGCGCGGCTC
GTCTACACCGACTTCGCCGCCTTCTCCGCCGACCAGGAGCGGCTCGCCGCGCCCGGGCCCGACGGCGCGTTCGGGCCGAT
GAGCTACCTCGAGGGCGCGGTCTACGTGAACCACAGCCTGGCCGCCGGGCTGAAGAACTCGGGCGGGTTCTTCACCGACG
CCGACGTCGCCAGGATCGTGGCCGTCGCCGCGGCGAGGAACGCCACCACCGTGTACGTCATCGAGACGACGCTCAACTAC
GACAGCGCCACGGCCGCGTCCGTGGACCAGGAGCTCAGCTCGGTGCTGGCGACGCTGAGGCACGAGGAGGGGCTCGCGTT
CGTGCGGGACGCGTCGTACCTGGAGTTCCTGGACCGGGTGCACGGCGAGGAGGTGGCGCTGGACAAGATCGGGCTGTGGC
GTGTCCCGCACCCTTGGCTCATCGTGCTCGTGCCCCGCTCCCGCATCGCCGACTTCGACCGCGGCGTCTTCAAGGGCATC
CTCCAGGGCACCGACATCGCCGGGCCTCTCGTCGTCTACCCGCTCAACAAATCCAAGTACG---TACGCGTCCATCGTAC
ATGCATGCATGCGATCCTGCATGGTATATA-------TCACGCACTTAACTGACA------CTGGCTCGGTCGTCGTTTC
AGGTGGGACGACGGCATGTCGGCGGTGACGCCGGCGGAGGAGGTGTTCTACGCAGTGTCGCTGCTCTTCTCGTCGGTGGC
CAACGACCTGAAGCGGCTGGAGGCGCAGAACCAGAAGATACTGCGGTTCTGCGACCTCGCCGGGATAGGGTACAAGGAGT
ACCTGGGACACTACACGGCCCACGGTGACTGGGTCCGCCACTTCGGCAGCAAGTGGCAGCGCTTCGTGGAGATGAAGGAC
AAGTACGACCCCAAGAGGCTGCTCTCCCCTGGCCAAGACATCTTCAACCTACTCCTTTGAGTAGATGCAATT-----TAG
TTGTTACTACTTGTGGATTAAC--GTGTGGACAGTAACACAGCAGTTTAACTTTAATTTCCCGTTTTTACTCATGCAATA
GCAAATTTGATAGTAGGTTGTACGCTAATAATATGCTCTGTCGAGCTTTAATCTCCACATGTACCCGTTA----TTAATA
GTACTACTGTAAGCAAAAGTGTGAACAAAGCTCCAACAATGTACACTTTGCCAGATAAATGTTTCATTTGAGCTCA----
--GAAGAGGACTTTGGCATGTCTTGTTCCTTTATTTGTTTGAGCTCTTTTATATGATTGCTCCAACTG----ACCTCCTA
GGGGGTAAGG--GGAGTGTTTAGTCTGAGCTATCCATGACTGATCAAGG---GTTTTGGCTAAATGAGC----ATCCACT
TTCACTGGAAAAAAAAGAGCGTCCACTTAAGGCAAGTTATTT-------------------------CAATGTGTTAAAA
ACGGAAGGATTTTAGTTGACTTAATTGTCATTTTCTACTACAGTTTTTGCTAAAGCACATCTAAATGTGCCATAAGTATT
GCACATCTAAGTCTTATATCATTGATCTTACACGAAGATTCGTGTGAATATTTTTCTTTTCTTTTCCTTTTTCTTTCTAT
GCTTGCTTGTGTCACTTGGATGTGCAATAGCTGAGGCACATCTAGATGTACCCTAGACAAACCCTTTCTATACTCCCTCC
GTTCCATAATGTAGTGCATATAGTTTTTTTTCTAAAAGTCGAACATTATAAATTTTGACCGTTTATAGAGAAAAATAGGT
ACATCTAGAATACCTAATGCACATCATTGGATACATCATGAGTTATGTTTTCATAATGTACGTGTCTGGTAGTGTAGATG
TAGACATTTTTCTCTATAAACTTGATCAAAGTTGGCACATTTTGACTTAAAAAAAATCTATATGCACTATATTGTGGAAT
GGAAGGAGTAATATATTAGAGACCTTCCATATATGATGGTATAACACCATCGCACTTTATTTCATACCATGAACGGATCG
TAGCAGCTAGAAGTATCTTTGTGTTTTTTGTTGTGCAGCCTCCAAAGCTAAAGAGAGAAGCTAAGATATCGTGTTTGATA
ATGTTT-GTAGTCTCATATGACATCCATCCAGACCAGGAATTCATACTC-AAAGCATCTCATGTTCGAACACATCATATT
TGTGATGAATTGTGTACATGACTTCTAGCACGTCCATGTGACATGTCTACCCCGTCAAGCTCACTACTCAAAGTCAAACA
CGAAAAGTAGATACATGAAAAGAAATTCTACATATTCTGATGTGTCCTATCCATAGCAAACTAGT---------------
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>chr3A_848
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------------TTAACGCATACGTTTATGTTGCACCGGCCGATCCATCTTCCCCCCGTAGGCCGGCTATATATACGGGG
TGCAACTCCGAGGAGCAAAACACCACAGGATAATTACCCAGCAG--ATCATCATCATCGCATTAACGCACCCAGCTAGCT
AAACGCGAGGCGCTAATGGCGATCGTTTACGTGCTTCTGGTGGCGCTGATCACCGCCGCGTCTCATGCGCCGCACGGCGC
GCACGGCCAGACGTGGCACGGCGACCTCGCGGCGCTCGCCGCGGCGGGCAAGCTCCGCAGCGACCCCAACGCCACCCTGG
CGGCCTCCACGGACTTCGGCAACATCACGGCGGCGCTCCCGGCGGCCGTGCTGTTCCCGTCGTCCCCGGCGGACGTGGCC
GCGCTCCTCCGCGCCGCGCACACCACCGTGGCGTGGCCCTACACCATCTCCTTCCGCGGGCGCGGGCACTCCGTGATGGG
GCAGGCCTTGGCCCCGGGCGGCGTGGTCGTGGACATGCCGTCCCTGGGCGGCCCG---------TCCTCCGCGGCGCGCA
TCAACGTGTCGGCGGACGGCCAGTACGTGGACGCCGGCGGCGAGCAGATGTGGATCGACGTGCTGCGCGCGACGCTGGAG
CGCGGCGTGGCGCCGCGCTCGTGGACGGACTACCTCCACCTGACCGTCGGCGGCACGCTCTCGAACGCCGGCATCAGCGG
CCAGACCTACCGGCACGGCCCCCAGATTTCCAACGTCCTGGAGCTGGACGTCATCACCGGTACGTACGTACGCGCGCACG
ATATGGGCAAGC----ACCAGCATGCACCACGCTCACAAGCAACTCCCTCTCGCAAA---GTAGTTACGTACCCCACACT
GCAATGCTGCAAAAATAGCTATAACTTGTTTCGGTGCAACTCGCAACT--------------------------CGCTCA
TCTTCTACGTACGCACACGGCAGTCTC-AGAAGGTGCCGGTAAAAAAATGGCAGC-------------------------
------------------------------------TAGTTACCACAGCTGACCAGCTGGCGGCCGGCTGCTGGGCCGGC
CGGGCAGCCGGCGTCGACGTCTTTCAAATTTCAATAGATTTGCCGGCGGCCAACAACGCGTTGACTTTGACATTTCCCCT
CTGTGTTAAATTACTACTCCATTACTCCACCCGGCCCGGCCGCATGTACCTTTGCGTTGACACGGTGCAATTAACGCGCG
TG---------CAGGCTACGGCGAGATGGTGACGTGCTCCAAGTCGCTCAGCGCGGACCTGTTCGACGCGGTGCTGGGCG
GGCTCGGCCAGTTCGGCGTGATCGTGCGCGCCCGGATCGCGCTCGAGCCAGCGCCGACGCGGGCGCGGTGGGCGCGGCTC
GTCTACACCGACTTCGCCGCCTTCTCCGCCGACCAGGAGCGGCTCGCCGCGCCCGGGCCCGACGGCGCGTTCGGGCCGAT
GAGCTACCTCGAGGGCGCGGTCTACGTGAACCACAGCCTGGCCGCCGGGCTGAGGAACTCGGGCGGGTTCTTCACCGACG
CCGACGTCGCCAGGATCGTCGCCGTCGCCGCGGCGAGGAACGCCACCACCGTGTACGTGATCGAGGCGACGCTCAACTAC
GACGACGCCACGGCCGCGTCCGTGGAGCAGGAGCTCAGCTCGGTGCTGGCGACGCTGAGGCACGAGGAGGGGCTCGCGTT
CGTGCGGGACGCGTCGTACCTCGAGTTCCTGGACCGGGTGCACGGCGAGGAGGTGGCGCTGGACAAGATCGGGCTGTGGC
GCGTCCCGCACCCCTGGCTCAACGTGCTCGTGCCCCGCTCCCGCATCGCCGACTTCGACAGCGGCGTCTTCAAGGGCATC
CTCCAGGACACCGACATCGCCGGGCCTCTCGTCGTCTACCCGCTCAACAAATCCAAGTACG---TACGCCTCCATCGTAC
ATGCATGCATGCGATCCTGCATCTGCATGGTATATACTCACGCACTTAACTGACACTGGCTCTGGCTCGGTCGTCGTTTC
AGGTGGGACGACGGCATGTCGGCGGTGACGCCGGCGGAGGAGGTGTTCTACGCGGTGTCGCTGCTCTTCTCGTCGGTGGC
CGACGACCTGAAGCGGCTGGAGGCGCAGAACCAGAAGATACTGCGGTTCTGCGACCTCGCCGGGATAGGGTACAAGGAGT
ACCTGGCGCACTACACGGCCCACGGCGACTGGGTCCGACACTTCGGCGGCAAGTGGAACCGCTTCGTGGAGATGAAGGAC
AAGTACGACCCCAAGAGGCTGCTCTCCCCTGGCCAAGACATCTTCAACCTGGTCCTTTGAGTAGATGCAATTACTACTAG
TTGTTACTACTTGTGGATTAACTCGTGTGGACAGTAACACATCAGTTTAACTTTAATTTTTCGATTTTACTCATGCAATA
GCAAATTTGATAGTAGGTGGTACGGTAATAATATGCTCTGTCGAGCTTGAATCTCCACATGTATCCGTTACTAAATAGCA
GTAGTACTGTAAGCAAAAGTGTGAAGAAAGCTCCACCGATGTACACTTTGCCAAATAAATGTTTCATTG-AGCTCACGAG
CAGAGGATGACTTTGGCATGTCTTGTTCCTTTATTTGTTTGAGCTCTTTTAAGACTGCTCCAAT------TTATCTCCTA
GGGGGTAA-----GAGTGTTTAATCTGAGCTATCAATGACTGATCAAGGGTAGTTTTGGCTAAATGAGTACGTATCCACT
TTCACTGCAAAAAAT-GAGCATCCACTTAAGGCAAGTTATTTTTTTTAGGTTTAAGTCGAGTTATTTTGATGAGCTAAAA
ATGGAAGATTTTTAGTTG---TAATTGTCATTTTCTACTATAGT------------------------------------
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------------ATATTGGAGATCTTCCATATATGATGGTGAAACACCATCGCACTTTATTTCATACCATGAACGGATCG
TGGCAGCTAGAAGTATCTTTGTGCTTTTTGTTGTGCAGCCTCCAAAGCTAGATAGAGAAGCTAAGATATCGTGTTTGATA
ATGTTT-GTAGTCTCATATGACATCCATCCAGACTACGGATTCGTACTCAAAAGCATCTCATGTTCGAACACATCATATC
TGTGCTGAAGT-TGTACATGACGTCTAGCACGTCCATGTGACATGTCTACCCCGTCAAGCTCACTACTCAAAGTCAAACA
CGAAAAATAGATACATGAAAAGAAATTCTACATATTGTGATGTGTCCTATTCATAGCAAACTAGT---------------
--------------------------------------------------------------------------------
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----------
>chr3D_1084
--------------------------------------------------------------------------------
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------------------CGACGAGCTCCGCGACCTCGGCGTCGCCGCGCTGATCCGCGACGACGCCGAGGCCACCGCGC
TCGCGTCCACTGACTTCGGCAACGTGACGGTCGCGCCGGCGGCGGCCGTGCTCTATCCGTCGTGCCCCGCAGACATTGCC
GCGCTGCTGCGCGCCTCGTGCGCGCGCTCGTCCCCGTTCCCGG---TGTCCGCCCGGGGACGCGGCCACTCCGTACGTGG
CCAGGCGGCCGCGACCGACGGCGTCGTCGTCGACATGCCGTCGCTCGGACGCCTCGGCGGAGGCTCCACTGCGTCCCGCC
TCTCCGTGTCGGTTGAAGGCCAGTACATAGACGCCGGCGGCGAACAGCTCTGGGTGGACGTGCTGCACGCCGCCCTCGCG
CACGGCCTAACGCCGCGTTCGTGGACCGACTACCTCCACCTCACCGTCGGCGGCACGCTCTCCAACGCCGGCATCAGCGG
CCAGGCCTTCCGCTACGGCCCCCAGATTTCCAACGTCCAAGAACTGGACGTCATCACCG----GTGAGTACGCTGCG---
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------S--S----SSS-------S------------------------------
--------S--------------------S------S-----------S-------------S-----------------
-----S------------S--S-------------------------------S-S-S-SS--SSSSSSSS-SSSSSSSS
SSS------S-S---------S------------------------S--------------S----------S-------
------SSSS--------S-------S-----S-----S---S-SSSSSSSS--SS--SSSSSSS---------------
S----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------SS-
----S-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------SS-S---S----S
S-SSS-SS-SSSSSS-SS---SSSSSS-S-SSSSSSSSSSS-SSSSSSSSS-------------------------S---
---S----SSSS-SSS-SSSS-----------S-S----S--SS---SS---S------S-S------------------
-----SS---------------------------------------S---SS----------------------------
-------S---S--------------------------SSSSSSSS-------------------------S--------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------S-----------------------------------------
--------------S-----------------------------------------------------------------
----------------------------S---------------------------------------------------
----------------S------------------------------------------------------------S--
--------------------------------------------------------------------------------
---------------------------------------------------------SSS------S-------------
------S---------S--------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------S-------S-----SS----------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--SSSSSSSSS-----------------S-------------------------------------------S-------
-------------------------------S------------------------------------------------
------------------S----S----------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S------S----------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------S-------------------SSS--------------S-
---------------------------S----------------------------------------------S-----
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-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SS------------------------S-------------S------------S--------
-----S---------------------S-----------------------------------------S------S---
--------------S-----------------S-----------S----------------------SSS----------
-------SSSSS------------------S------------------------------------------S------
--------------------------------------------------------------------------------
S---------------S-------------------------S-------------------------------------
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----------------------------------------------------------------------------S---
------------------------S-------------------------------------------------------
------S----------------------------------------------------------S-----S--------
---------------------------S--------------------------------------S-------------
-S------------------------------S--------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_770
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CCTGTGCTGTGTACCAGAGG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_2827
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCTCGTCGTCTACCCACTCA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_1815
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCAACTCGCAACCCGTAATC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_4345
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTGTTGTGCAGCCTCCA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
