Multiple sequence alignment - TraesCS3B01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G123700 chr3B 100.000 2363 0 0 1 2363 96069880 96072242 0.000000e+00 4364
1 TraesCS3B01G123700 chr3B 94.864 623 31 1 1 622 752346327 752345705 0.000000e+00 972
2 TraesCS3B01G123700 chr3B 93.913 115 7 0 2249 2363 170981167 170981053 8.680000e-40 174
3 TraesCS3B01G123700 chr3B 93.750 112 7 0 2252 2363 666404348 666404237 4.040000e-38 169
4 TraesCS3B01G123700 chr3B 93.750 112 4 2 2245 2353 587432969 587433080 5.220000e-37 165
5 TraesCS3B01G123700 chr3D 94.578 1457 48 16 666 2096 60007292 60005841 0.000000e+00 2224
6 TraesCS3B01G123700 chr3A 91.348 994 55 14 1173 2136 69100100 69101092 0.000000e+00 1330
7 TraesCS3B01G123700 chr3A 87.986 566 41 16 620 1177 69097713 69098259 0.000000e+00 643
8 TraesCS3B01G123700 chr6B 95.813 621 25 1 1 620 25270831 25270211 0.000000e+00 1002
9 TraesCS3B01G123700 chr6B 95.185 623 27 3 1 622 567497587 567498207 0.000000e+00 981
10 TraesCS3B01G123700 chr6B 90.435 115 11 0 2149 2263 132148946 132149060 4.070000e-33 152
11 TraesCS3B01G123700 chr1B 95.534 627 25 3 1 625 480753564 480752939 0.000000e+00 1000
12 TraesCS3B01G123700 chr1B 95.238 105 5 0 2147 2251 116118612 116118716 1.450000e-37 167
13 TraesCS3B01G123700 chr5B 95.631 618 26 1 1 617 587111971 587112588 0.000000e+00 990
14 TraesCS3B01G123700 chr5B 94.017 117 7 0 2247 2363 460149470 460149586 6.710000e-41 178
15 TraesCS3B01G123700 chr5B 94.286 105 6 0 2147 2251 94285259 94285155 6.760000e-36 161
16 TraesCS3B01G123700 chr2B 95.185 623 29 1 1 622 54010066 54010688 0.000000e+00 983
17 TraesCS3B01G123700 chr2B 96.226 106 4 0 2240 2345 27901718 27901823 8.680000e-40 174
18 TraesCS3B01G123700 chr2B 93.805 113 6 1 2234 2345 608941265 608941153 4.040000e-38 169
19 TraesCS3B01G123700 chr7B 95.146 618 29 1 1 617 458108444 458109061 0.000000e+00 974
20 TraesCS3B01G123700 chr7B 90.517 116 9 2 2138 2251 6036936 6036821 4.070000e-33 152
21 TraesCS3B01G123700 chr4A 95.146 618 28 2 1 617 689447602 689448218 0.000000e+00 974
22 TraesCS3B01G123700 chr4A 95.238 105 5 0 2147 2251 689623674 689623778 1.450000e-37 167
23 TraesCS3B01G123700 chr4B 95.146 618 27 3 1 617 626737937 626738552 0.000000e+00 972
24 TraesCS3B01G123700 chr5A 92.500 120 7 2 2230 2348 567884918 567885036 1.120000e-38 171
25 TraesCS3B01G123700 chr5A 95.327 107 4 1 2240 2345 441172392 441172498 4.040000e-38 169
26 TraesCS3B01G123700 chr5A 93.396 106 7 0 2146 2251 385247938 385248043 8.740000e-35 158
27 TraesCS3B01G123700 chr4D 96.078 102 3 1 2244 2345 74226258 74226158 5.220000e-37 165
28 TraesCS3B01G123700 chr6A 93.396 106 7 0 2146 2251 161549705 161549600 8.740000e-35 158
29 TraesCS3B01G123700 chr1D 91.964 112 9 0 2140 2251 41304117 41304006 8.740000e-35 158
30 TraesCS3B01G123700 chr7D 90.598 117 8 3 2135 2251 383285008 383285121 4.070000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G123700 chr3B 96069880 96072242 2362 False 4364.0 4364 100.000 1 2363 1 chr3B.!!$F1 2362
1 TraesCS3B01G123700 chr3B 752345705 752346327 622 True 972.0 972 94.864 1 622 1 chr3B.!!$R3 621
2 TraesCS3B01G123700 chr3D 60005841 60007292 1451 True 2224.0 2224 94.578 666 2096 1 chr3D.!!$R1 1430
3 TraesCS3B01G123700 chr3A 69097713 69101092 3379 False 986.5 1330 89.667 620 2136 2 chr3A.!!$F1 1516
4 TraesCS3B01G123700 chr6B 25270211 25270831 620 True 1002.0 1002 95.813 1 620 1 chr6B.!!$R1 619
5 TraesCS3B01G123700 chr6B 567497587 567498207 620 False 981.0 981 95.185 1 622 1 chr6B.!!$F2 621
6 TraesCS3B01G123700 chr1B 480752939 480753564 625 True 1000.0 1000 95.534 1 625 1 chr1B.!!$R1 624
7 TraesCS3B01G123700 chr5B 587111971 587112588 617 False 990.0 990 95.631 1 617 1 chr5B.!!$F2 616
8 TraesCS3B01G123700 chr2B 54010066 54010688 622 False 983.0 983 95.185 1 622 1 chr2B.!!$F2 621
9 TraesCS3B01G123700 chr7B 458108444 458109061 617 False 974.0 974 95.146 1 617 1 chr7B.!!$F1 616
10 TraesCS3B01G123700 chr4A 689447602 689448218 616 False 974.0 974 95.146 1 617 1 chr4A.!!$F1 616
11 TraesCS3B01G123700 chr4B 626737937 626738552 615 False 972.0 972 95.146 1 617 1 chr4B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 557 0.037697 CCGGACACGACTCCAAATCA 60.038 55.0 0.0 0.0 44.6 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 3853 0.32016 GGTTGAAGTTCCGCCGTACT 60.32 55.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.361104 TGCTTCAATCCCGGTGGC 60.361 61.111 0.00 0.00 0.00 5.01
283 284 0.464036 ACTTGGTTGAGCACGTCTGA 59.536 50.000 0.00 0.00 0.00 3.27
463 464 4.723309 TGTAAATTTGGGCATTTTTGGCT 58.277 34.783 0.00 0.00 34.52 4.75
533 536 0.606401 CACCGCATTTCAGGACAGGT 60.606 55.000 0.00 0.00 0.00 4.00
553 557 0.037697 CCGGACACGACTCCAAATCA 60.038 55.000 0.00 0.00 44.60 2.57
594 598 0.230515 GGACAAAACGAACGTCCGTC 59.769 55.000 0.00 7.56 42.54 4.79
598 602 0.102844 AAAACGAACGTCCGTCTGGA 59.897 50.000 0.00 0.00 42.54 3.86
664 668 4.143333 CCGTCCGGTGGTAGCCAG 62.143 72.222 0.00 0.00 32.34 4.85
823 827 2.196776 CCTCCCATCCCATGTGCC 59.803 66.667 0.00 0.00 0.00 5.01
880 885 1.076923 GCCTCTCCACCTCCTACGA 60.077 63.158 0.00 0.00 0.00 3.43
911 916 4.083855 CCGATTGATATTCATTCACGGTGG 60.084 45.833 8.50 0.00 34.39 4.61
935 947 1.471684 CCCGTCGTCTGCTAGTTTAGT 59.528 52.381 0.00 0.00 0.00 2.24
943 955 3.498397 GTCTGCTAGTTTAGTTGCAAGCA 59.502 43.478 0.00 1.74 37.62 3.91
945 957 3.476552 TGCTAGTTTAGTTGCAAGCAGT 58.523 40.909 0.00 0.00 35.20 4.40
975 987 0.178970 ACCTACCTCACCGTGTCACT 60.179 55.000 0.65 0.00 0.00 3.41
1047 1069 2.731571 GCTGACCATAGACCCGGCA 61.732 63.158 0.00 0.00 0.00 5.69
1143 1165 3.087273 CTGCTACATGGCGCACGTG 62.087 63.158 12.28 12.28 41.98 4.49
1384 3251 1.227615 GCAGCTGCTGGATCCTCTC 60.228 63.158 31.33 7.75 38.21 3.20
1391 3261 1.628727 CTGGATCCTCTCCTCCCCA 59.371 63.158 14.23 0.00 45.21 4.96
1408 3278 1.388065 CCATCTCCGGCGACTCTCTT 61.388 60.000 9.30 0.00 0.00 2.85
1416 3286 1.661821 GCGACTCTCTTGCACGTGT 60.662 57.895 18.38 0.00 0.00 4.49
1418 3288 0.595053 CGACTCTCTTGCACGTGTGT 60.595 55.000 18.38 5.06 0.00 3.72
1434 3316 1.520564 TGTGTGCACGCTTCGTCTT 60.521 52.632 29.04 0.00 38.32 3.01
1440 3322 1.276145 GCACGCTTCGTCTTCGTCTT 61.276 55.000 0.00 0.00 38.32 3.01
1463 3345 4.214758 TCGTCTCCGTGTATGTACATATGG 59.785 45.833 18.27 18.46 38.63 2.74
1476 3361 5.754782 TGTACATATGGAAACCATGAGCTT 58.245 37.500 12.78 0.00 44.84 3.74
1617 3511 7.937649 GGTTGGACCTAAATGTGATTATTACC 58.062 38.462 0.00 0.00 34.73 2.85
1651 3549 1.528586 CTCCAGCTGTGTTGAGTTTCG 59.471 52.381 13.81 0.00 0.00 3.46
1685 3583 4.363138 AGCAACTTAGCTGTTTGAAAAGC 58.637 39.130 0.00 0.00 44.66 3.51
1773 3677 6.036735 TGTTTGGCGCTAATTAACTAGTGATC 59.963 38.462 7.14 1.05 32.17 2.92
1816 3720 7.907214 ATAATCATACTTGGAAGCCGATTAC 57.093 36.000 0.00 0.00 31.93 1.89
1857 3761 1.568118 ATTCAAGTACCGGGGTGGGG 61.568 60.000 6.32 0.00 44.64 4.96
1948 3853 2.202663 GCGCATCAGTCTCGCTCA 60.203 61.111 0.30 0.00 44.79 4.26
2019 3928 5.808366 AGCAAGCCTAGCATACAAGTATA 57.192 39.130 0.00 0.00 0.00 1.47
2098 4007 6.071320 AGTAGCACCTCCTTTTTCTGAATTT 58.929 36.000 0.00 0.00 0.00 1.82
2108 4017 6.015434 TCCTTTTTCTGAATTTAAGACTGGCC 60.015 38.462 0.00 0.00 0.00 5.36
2136 4045 9.521841 TTCATTAGTGGTACTCCTAGATGATAG 57.478 37.037 0.00 0.00 34.23 2.08
2137 4046 8.891501 TCATTAGTGGTACTCCTAGATGATAGA 58.108 37.037 0.00 0.00 34.23 1.98
2138 4047 9.693739 CATTAGTGGTACTCCTAGATGATAGAT 57.306 37.037 0.00 0.00 34.23 1.98
2139 4048 9.693739 ATTAGTGGTACTCCTAGATGATAGATG 57.306 37.037 0.00 0.00 34.23 2.90
2140 4049 7.336475 AGTGGTACTCCTAGATGATAGATGA 57.664 40.000 0.00 0.00 34.23 2.92
2141 4050 7.938686 AGTGGTACTCCTAGATGATAGATGAT 58.061 38.462 0.00 0.00 34.23 2.45
2142 4051 9.063484 AGTGGTACTCCTAGATGATAGATGATA 57.937 37.037 0.00 0.00 34.23 2.15
2143 4052 9.116067 GTGGTACTCCTAGATGATAGATGATAC 57.884 40.741 0.00 0.00 34.23 2.24
2144 4053 9.063484 TGGTACTCCTAGATGATAGATGATACT 57.937 37.037 0.00 0.00 34.23 2.12
2145 4054 9.337396 GGTACTCCTAGATGATAGATGATACTG 57.663 40.741 0.00 0.00 0.00 2.74
2146 4055 9.899661 GTACTCCTAGATGATAGATGATACTGT 57.100 37.037 0.00 0.00 0.00 3.55
2150 4059 9.913310 TCCTAGATGATAGATGATACTGTAAGG 57.087 37.037 0.00 0.00 39.30 2.69
2151 4060 9.130661 CCTAGATGATAGATGATACTGTAAGGG 57.869 40.741 0.00 0.00 39.30 3.95
2152 4061 7.416964 AGATGATAGATGATACTGTAAGGGC 57.583 40.000 0.00 0.00 39.30 5.19
2153 4062 6.956435 AGATGATAGATGATACTGTAAGGGCA 59.044 38.462 0.00 0.00 39.30 5.36
2154 4063 7.622878 AGATGATAGATGATACTGTAAGGGCAT 59.377 37.037 0.00 0.00 39.30 4.40
2155 4064 6.939622 TGATAGATGATACTGTAAGGGCATG 58.060 40.000 0.00 0.00 39.30 4.06
2156 4065 6.498303 TGATAGATGATACTGTAAGGGCATGT 59.502 38.462 0.00 0.00 39.30 3.21
2157 4066 5.636903 AGATGATACTGTAAGGGCATGTT 57.363 39.130 0.00 0.00 39.30 2.71
2158 4067 6.006275 AGATGATACTGTAAGGGCATGTTT 57.994 37.500 0.00 0.00 39.30 2.83
2159 4068 5.824624 AGATGATACTGTAAGGGCATGTTTG 59.175 40.000 0.00 0.00 39.30 2.93
2160 4069 4.269183 TGATACTGTAAGGGCATGTTTGG 58.731 43.478 0.00 0.00 39.30 3.28
2161 4070 2.675658 ACTGTAAGGGCATGTTTGGT 57.324 45.000 0.00 0.00 39.30 3.67
2162 4071 2.957474 ACTGTAAGGGCATGTTTGGTT 58.043 42.857 0.00 0.00 39.30 3.67
2163 4072 3.304829 ACTGTAAGGGCATGTTTGGTTT 58.695 40.909 0.00 0.00 39.30 3.27
2164 4073 3.320826 ACTGTAAGGGCATGTTTGGTTTC 59.679 43.478 0.00 0.00 39.30 2.78
2165 4074 3.300388 TGTAAGGGCATGTTTGGTTTCA 58.700 40.909 0.00 0.00 0.00 2.69
2166 4075 3.706594 TGTAAGGGCATGTTTGGTTTCAA 59.293 39.130 0.00 0.00 0.00 2.69
2167 4076 3.922171 AAGGGCATGTTTGGTTTCAAA 57.078 38.095 0.00 0.00 40.23 2.69
2168 4077 4.436113 AAGGGCATGTTTGGTTTCAAAT 57.564 36.364 0.00 0.00 43.73 2.32
2169 4078 5.559148 AAGGGCATGTTTGGTTTCAAATA 57.441 34.783 0.00 0.00 43.73 1.40
2170 4079 5.559148 AGGGCATGTTTGGTTTCAAATAA 57.441 34.783 0.00 0.00 43.73 1.40
2171 4080 5.550290 AGGGCATGTTTGGTTTCAAATAAG 58.450 37.500 0.00 0.00 43.73 1.73
2172 4081 5.071653 AGGGCATGTTTGGTTTCAAATAAGT 59.928 36.000 0.00 0.00 43.73 2.24
2173 4082 5.408299 GGGCATGTTTGGTTTCAAATAAGTC 59.592 40.000 0.00 0.00 43.73 3.01
2174 4083 5.988561 GGCATGTTTGGTTTCAAATAAGTCA 59.011 36.000 0.00 0.00 43.73 3.41
2175 4084 6.073819 GGCATGTTTGGTTTCAAATAAGTCAC 60.074 38.462 0.00 0.00 43.73 3.67
2176 4085 6.073819 GCATGTTTGGTTTCAAATAAGTCACC 60.074 38.462 0.00 0.00 43.73 4.02
2177 4086 6.531503 TGTTTGGTTTCAAATAAGTCACCA 57.468 33.333 0.00 0.00 43.73 4.17
2178 4087 6.936279 TGTTTGGTTTCAAATAAGTCACCAA 58.064 32.000 0.00 0.00 43.73 3.67
2179 4088 6.814146 TGTTTGGTTTCAAATAAGTCACCAAC 59.186 34.615 1.03 0.00 42.59 3.77
2180 4089 6.783708 TTGGTTTCAAATAAGTCACCAACT 57.216 33.333 0.00 0.00 38.97 3.16
2181 4090 7.547722 GTTTGGTTTCAAATAAGTCACCAACTT 59.452 33.333 1.03 0.00 42.59 2.66
2194 4103 7.653767 AGTCACCAACTTATAAGTCGAAAAG 57.346 36.000 18.28 7.33 38.57 2.27
2195 4104 7.215085 AGTCACCAACTTATAAGTCGAAAAGT 58.785 34.615 18.28 7.29 38.57 2.66
2196 4105 7.170998 AGTCACCAACTTATAAGTCGAAAAGTG 59.829 37.037 18.28 16.78 38.57 3.16
2197 4106 6.425721 TCACCAACTTATAAGTCGAAAAGTGG 59.574 38.462 18.28 19.93 38.57 4.00
2198 4107 6.425721 CACCAACTTATAAGTCGAAAAGTGGA 59.574 38.462 26.18 0.00 38.57 4.02
2199 4108 6.993902 ACCAACTTATAAGTCGAAAAGTGGAA 59.006 34.615 26.18 0.00 38.57 3.53
2200 4109 7.499895 ACCAACTTATAAGTCGAAAAGTGGAAA 59.500 33.333 26.18 0.00 38.57 3.13
2201 4110 8.347035 CCAACTTATAAGTCGAAAAGTGGAAAA 58.653 33.333 18.28 0.00 38.57 2.29
2202 4111 9.724839 CAACTTATAAGTCGAAAAGTGGAAAAA 57.275 29.630 18.28 0.00 38.57 1.94
2227 4136 9.681692 AAATAACTTATTTTGTCAAACGTACCC 57.318 29.630 0.00 0.00 34.91 3.69
2228 4137 6.696441 AACTTATTTTGTCAAACGTACCCA 57.304 33.333 0.00 0.00 0.00 4.51
2229 4138 6.696441 ACTTATTTTGTCAAACGTACCCAA 57.304 33.333 0.00 0.00 0.00 4.12
2230 4139 6.497437 ACTTATTTTGTCAAACGTACCCAAC 58.503 36.000 0.00 0.00 0.00 3.77
2231 4140 6.319405 ACTTATTTTGTCAAACGTACCCAACT 59.681 34.615 0.00 0.00 0.00 3.16
2232 4141 5.585820 ATTTTGTCAAACGTACCCAACTT 57.414 34.783 0.00 0.00 0.00 2.66
2233 4142 6.696441 ATTTTGTCAAACGTACCCAACTTA 57.304 33.333 0.00 0.00 0.00 2.24
2234 4143 6.696441 TTTTGTCAAACGTACCCAACTTAT 57.304 33.333 0.00 0.00 0.00 1.73
2235 4144 7.798596 TTTTGTCAAACGTACCCAACTTATA 57.201 32.000 0.00 0.00 0.00 0.98
2236 4145 7.798596 TTTGTCAAACGTACCCAACTTATAA 57.201 32.000 0.00 0.00 0.00 0.98
2237 4146 7.424227 TTGTCAAACGTACCCAACTTATAAG 57.576 36.000 11.05 11.05 0.00 1.73
2238 4147 6.523840 TGTCAAACGTACCCAACTTATAAGT 58.476 36.000 12.50 12.50 42.04 2.24
2239 4148 6.646240 TGTCAAACGTACCCAACTTATAAGTC 59.354 38.462 18.28 4.35 38.57 3.01
2240 4149 6.646240 GTCAAACGTACCCAACTTATAAGTCA 59.354 38.462 18.28 0.02 38.57 3.41
2241 4150 6.646240 TCAAACGTACCCAACTTATAAGTCAC 59.354 38.462 18.28 10.27 38.57 3.67
2242 4151 5.077134 ACGTACCCAACTTATAAGTCACC 57.923 43.478 18.28 3.73 38.57 4.02
2243 4152 4.081476 ACGTACCCAACTTATAAGTCACCC 60.081 45.833 18.28 4.66 38.57 4.61
2244 4153 4.681512 CGTACCCAACTTATAAGTCACCCC 60.682 50.000 18.28 5.15 38.57 4.95
2245 4154 3.261962 ACCCAACTTATAAGTCACCCCA 58.738 45.455 18.28 0.00 38.57 4.96
2246 4155 3.658705 ACCCAACTTATAAGTCACCCCAA 59.341 43.478 18.28 0.00 38.57 4.12
2247 4156 4.014406 CCCAACTTATAAGTCACCCCAAC 58.986 47.826 18.28 0.00 38.57 3.77
2248 4157 4.263771 CCCAACTTATAAGTCACCCCAACT 60.264 45.833 18.28 0.00 38.57 3.16
2249 4158 5.321927 CCAACTTATAAGTCACCCCAACTT 58.678 41.667 18.28 0.00 38.57 2.66
2250 4159 6.478129 CCAACTTATAAGTCACCCCAACTTA 58.522 40.000 18.28 0.00 41.91 2.24
2251 4160 6.598064 CCAACTTATAAGTCACCCCAACTTAG 59.402 42.308 18.28 0.00 41.23 2.18
2252 4161 6.309389 ACTTATAAGTCACCCCAACTTAGG 57.691 41.667 12.50 0.00 41.23 2.69
2253 4162 5.191124 ACTTATAAGTCACCCCAACTTAGGG 59.809 44.000 12.50 0.00 42.43 3.53
2254 4163 8.274820 ACTTATAAGTCACCCCAACTTAGGGC 62.275 46.154 12.50 0.00 41.10 5.19
2260 4169 3.765968 CCCAACTTAGGGCCTGTTT 57.234 52.632 18.53 3.02 43.10 2.83
2261 4170 1.256812 CCCAACTTAGGGCCTGTTTG 58.743 55.000 18.53 15.53 43.10 2.93
2262 4171 1.256812 CCAACTTAGGGCCTGTTTGG 58.743 55.000 18.53 20.37 39.35 3.28
2263 4172 1.480498 CCAACTTAGGGCCTGTTTGGT 60.480 52.381 24.30 11.68 38.35 3.67
2264 4173 2.316108 CAACTTAGGGCCTGTTTGGTT 58.684 47.619 18.53 10.53 38.35 3.67
2265 4174 2.698274 CAACTTAGGGCCTGTTTGGTTT 59.302 45.455 18.53 0.00 38.35 3.27
2266 4175 2.594131 ACTTAGGGCCTGTTTGGTTTC 58.406 47.619 18.53 0.00 38.35 2.78
2267 4176 2.091555 ACTTAGGGCCTGTTTGGTTTCA 60.092 45.455 18.53 0.00 38.35 2.69
2268 4177 2.757894 TAGGGCCTGTTTGGTTTCAA 57.242 45.000 18.53 0.00 38.35 2.69
2269 4178 2.101640 AGGGCCTGTTTGGTTTCAAT 57.898 45.000 4.50 0.00 38.35 2.57
2270 4179 3.252554 AGGGCCTGTTTGGTTTCAATA 57.747 42.857 4.50 0.00 38.35 1.90
2271 4180 3.582164 AGGGCCTGTTTGGTTTCAATAA 58.418 40.909 4.50 0.00 38.35 1.40
2272 4181 3.578282 AGGGCCTGTTTGGTTTCAATAAG 59.422 43.478 4.50 0.00 38.35 1.73
2273 4182 3.323691 GGGCCTGTTTGGTTTCAATAAGT 59.676 43.478 0.84 0.00 38.35 2.24
2274 4183 4.556233 GGCCTGTTTGGTTTCAATAAGTC 58.444 43.478 0.00 0.00 38.35 3.01
2275 4184 4.038642 GGCCTGTTTGGTTTCAATAAGTCA 59.961 41.667 0.00 0.00 38.35 3.41
2276 4185 4.982295 GCCTGTTTGGTTTCAATAAGTCAC 59.018 41.667 0.00 0.00 38.35 3.67
2277 4186 5.528870 CCTGTTTGGTTTCAATAAGTCACC 58.471 41.667 0.00 0.00 32.28 4.02
2278 4187 5.301805 CCTGTTTGGTTTCAATAAGTCACCT 59.698 40.000 0.00 0.00 32.28 4.00
2279 4188 6.385649 TGTTTGGTTTCAATAAGTCACCTC 57.614 37.500 0.00 0.00 32.28 3.85
2280 4189 5.888724 TGTTTGGTTTCAATAAGTCACCTCA 59.111 36.000 0.00 0.00 32.28 3.86
2281 4190 6.183360 TGTTTGGTTTCAATAAGTCACCTCAC 60.183 38.462 0.00 0.00 32.28 3.51
2282 4191 5.304686 TGGTTTCAATAAGTCACCTCACT 57.695 39.130 0.00 0.00 0.00 3.41
2283 4192 5.690865 TGGTTTCAATAAGTCACCTCACTT 58.309 37.500 0.00 0.00 39.94 3.16
2284 4193 6.833041 TGGTTTCAATAAGTCACCTCACTTA 58.167 36.000 0.00 0.00 41.92 2.24
2285 4194 7.458397 TGGTTTCAATAAGTCACCTCACTTAT 58.542 34.615 0.85 0.85 46.98 1.73
2286 4195 8.598916 TGGTTTCAATAAGTCACCTCACTTATA 58.401 33.333 6.34 0.00 45.14 0.98
2287 4196 9.444600 GGTTTCAATAAGTCACCTCACTTATAA 57.555 33.333 6.34 0.00 45.14 0.98
2290 4199 9.871238 TTCAATAAGTCACCTCACTTATAAGTC 57.129 33.333 15.35 2.89 45.14 3.01
2291 4200 9.031537 TCAATAAGTCACCTCACTTATAAGTCA 57.968 33.333 15.35 1.54 45.14 3.41
2292 4201 9.307121 CAATAAGTCACCTCACTTATAAGTCAG 57.693 37.037 15.35 12.28 45.14 3.51
2309 4218 4.813296 GTCAGGTGACTTAAAACCAGTG 57.187 45.455 2.72 0.00 41.65 3.66
2310 4219 4.448210 GTCAGGTGACTTAAAACCAGTGA 58.552 43.478 2.72 0.00 41.65 3.41
2311 4220 4.272748 GTCAGGTGACTTAAAACCAGTGAC 59.727 45.833 2.72 6.43 41.65 3.67
2312 4221 4.163458 TCAGGTGACTTAAAACCAGTGACT 59.837 41.667 0.00 0.00 40.21 3.41
2313 4222 4.881850 CAGGTGACTTAAAACCAGTGACTT 59.118 41.667 0.00 0.00 40.21 3.01
2314 4223 6.053005 CAGGTGACTTAAAACCAGTGACTTA 58.947 40.000 0.00 0.00 40.21 2.24
2315 4224 6.710744 CAGGTGACTTAAAACCAGTGACTTAT 59.289 38.462 0.00 0.00 40.21 1.73
2316 4225 7.876068 CAGGTGACTTAAAACCAGTGACTTATA 59.124 37.037 0.00 0.00 40.21 0.98
2317 4226 8.434392 AGGTGACTTAAAACCAGTGACTTATAA 58.566 33.333 0.00 0.00 37.44 0.98
2318 4227 8.718734 GGTGACTTAAAACCAGTGACTTATAAG 58.281 37.037 11.05 11.05 36.41 1.73
2319 4228 9.269453 GTGACTTAAAACCAGTGACTTATAAGT 57.731 33.333 18.05 18.05 43.16 2.24
2333 4242 5.850614 ACTTATAAGTCACGTCTGTTTGGT 58.149 37.500 12.50 0.00 32.86 3.67
2334 4243 6.285990 ACTTATAAGTCACGTCTGTTTGGTT 58.714 36.000 12.50 0.00 32.86 3.67
2335 4244 6.202188 ACTTATAAGTCACGTCTGTTTGGTTG 59.798 38.462 12.50 0.00 32.86 3.77
2336 4245 2.396590 AGTCACGTCTGTTTGGTTGT 57.603 45.000 0.00 0.00 0.00 3.32
2337 4246 2.277084 AGTCACGTCTGTTTGGTTGTC 58.723 47.619 0.00 0.00 0.00 3.18
2338 4247 2.004017 GTCACGTCTGTTTGGTTGTCA 58.996 47.619 0.00 0.00 0.00 3.58
2339 4248 2.004017 TCACGTCTGTTTGGTTGTCAC 58.996 47.619 0.00 0.00 0.00 3.67
2340 4249 1.063469 CACGTCTGTTTGGTTGTCACC 59.937 52.381 0.00 0.00 44.56 4.02
2341 4250 1.065709 ACGTCTGTTTGGTTGTCACCT 60.066 47.619 0.00 0.00 44.61 4.00
2342 4251 1.330521 CGTCTGTTTGGTTGTCACCTG 59.669 52.381 0.00 0.00 44.61 4.00
2343 4252 2.639065 GTCTGTTTGGTTGTCACCTGA 58.361 47.619 0.00 0.00 44.61 3.86
2344 4253 2.354821 GTCTGTTTGGTTGTCACCTGAC 59.645 50.000 0.00 0.00 44.61 3.51
2356 4265 3.964909 GTCACCTGACACATTTTTCCAC 58.035 45.455 0.31 0.00 44.18 4.02
2357 4266 3.380004 GTCACCTGACACATTTTTCCACA 59.620 43.478 0.31 0.00 44.18 4.17
2358 4267 3.380004 TCACCTGACACATTTTTCCACAC 59.620 43.478 0.00 0.00 0.00 3.82
2359 4268 2.693074 ACCTGACACATTTTTCCACACC 59.307 45.455 0.00 0.00 0.00 4.16
2360 4269 2.692557 CCTGACACATTTTTCCACACCA 59.307 45.455 0.00 0.00 0.00 4.17
2361 4270 3.131933 CCTGACACATTTTTCCACACCAA 59.868 43.478 0.00 0.00 0.00 3.67
2362 4271 4.202243 CCTGACACATTTTTCCACACCAAT 60.202 41.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.643820 GCAGGGTTTCGAACGATACG 59.356 55.000 0.00 0.00 0.00 3.06
304 305 8.469200 ACTGAACATAAATTGGACCAATACATG 58.531 33.333 25.50 25.50 32.43 3.21
463 464 1.685765 CCCCATCCTGTCCGTCAGA 60.686 63.158 6.45 0.00 46.27 3.27
513 516 0.321564 CCTGTCCTGAAATGCGGTGA 60.322 55.000 0.00 0.00 0.00 4.02
533 536 0.245539 GATTTGGAGTCGTGTCCGGA 59.754 55.000 0.00 0.00 39.81 5.14
553 557 3.743269 CGGTTTCTGTCTGTTTGGGTAGT 60.743 47.826 0.00 0.00 0.00 2.73
594 598 4.812476 TCCACCGCGCGATTCCAG 62.812 66.667 34.63 16.26 0.00 3.86
598 602 3.118454 CAACTCCACCGCGCGATT 61.118 61.111 34.63 15.61 0.00 3.34
617 621 1.948145 GGCGGAGAGAGACGAATTAGA 59.052 52.381 0.00 0.00 0.00 2.10
658 662 4.431524 CCCTCCCACCCCTGGCTA 62.432 72.222 0.00 0.00 36.00 3.93
661 665 3.017581 CTTCCCTCCCACCCCTGG 61.018 72.222 0.00 0.00 37.29 4.45
662 666 3.017581 CCTTCCCTCCCACCCCTG 61.018 72.222 0.00 0.00 0.00 4.45
663 667 3.216371 TCCTTCCCTCCCACCCCT 61.216 66.667 0.00 0.00 0.00 4.79
664 668 2.692741 CTCCTTCCCTCCCACCCC 60.693 72.222 0.00 0.00 0.00 4.95
668 672 1.330155 AGTATCCTCCTTCCCTCCCA 58.670 55.000 0.00 0.00 0.00 4.37
677 681 2.503356 CAGAGCACCAAAGTATCCTCCT 59.497 50.000 0.00 0.00 0.00 3.69
698 702 0.736325 CAGCACCACCACGTACTAGC 60.736 60.000 0.00 0.00 0.00 3.42
755 759 2.743928 GGCCTGAGGTTGCGTCAG 60.744 66.667 0.00 10.73 43.38 3.51
832 836 3.714391 CGAGGCGTTTATATATAGGGGC 58.286 50.000 0.00 0.00 0.00 5.80
911 916 3.701604 CTAGCAGACGACGGGTGCC 62.702 68.421 17.16 3.48 37.98 5.01
916 921 2.915463 CAACTAAACTAGCAGACGACGG 59.085 50.000 0.00 0.00 0.00 4.79
927 939 2.552315 GCCACTGCTTGCAACTAAACTA 59.448 45.455 0.00 0.00 33.53 2.24
1143 1165 1.299773 CGCGAGGAGGCTCTTCATC 60.300 63.158 24.09 14.59 0.00 2.92
1391 3261 2.010582 GCAAGAGAGTCGCCGGAGAT 62.011 60.000 12.23 0.00 0.00 2.75
1416 3286 1.487452 GAAGACGAAGCGTGCACACA 61.487 55.000 18.64 0.00 41.37 3.72
1418 3288 2.300066 CGAAGACGAAGCGTGCACA 61.300 57.895 18.64 0.00 41.37 4.57
1428 3310 0.795085 GGAGACGAAGACGAAGACGA 59.205 55.000 0.00 0.00 42.66 4.20
1463 3345 7.867403 TCTTGAAATTACAAAGCTCATGGTTTC 59.133 33.333 4.67 10.42 41.31 2.78
1476 3361 7.942341 ACACCCTTGATAGTCTTGAAATTACAA 59.058 33.333 0.00 0.00 0.00 2.41
1617 3511 4.951094 ACAGCTGGAGTAGTCCTAAGTAAG 59.049 45.833 19.93 6.58 44.30 2.34
1684 3582 3.385384 GGGCAAGCAAAGAGGGGC 61.385 66.667 0.00 0.00 0.00 5.80
1685 3583 2.118076 TGGGCAAGCAAAGAGGGG 59.882 61.111 0.00 0.00 0.00 4.79
1773 3677 0.393673 TACGGCAATCATGTGGGGTG 60.394 55.000 0.00 0.00 0.00 4.61
1800 3704 4.202264 CCATAGAGTAATCGGCTTCCAAGT 60.202 45.833 0.00 0.00 0.00 3.16
1816 3720 6.805016 ATATGTTATCTCCCTGCCATAGAG 57.195 41.667 0.00 0.00 0.00 2.43
1857 3761 0.922243 TCCCCCTTCATTACCCACCC 60.922 60.000 0.00 0.00 0.00 4.61
1869 3774 4.003788 CGTGCTGACGTCCCCCTT 62.004 66.667 14.12 0.00 40.91 3.95
1948 3853 0.320160 GGTTGAAGTTCCGCCGTACT 60.320 55.000 0.00 0.00 0.00 2.73
2019 3928 6.566079 TCATCTGACCTCAATATTGGTTCT 57.434 37.500 15.36 0.00 36.59 3.01
2098 4007 3.199946 CCACTAATGAAGGGCCAGTCTTA 59.800 47.826 6.18 3.23 0.00 2.10
2108 4017 6.778069 TCATCTAGGAGTACCACTAATGAAGG 59.222 42.308 11.96 0.00 38.94 3.46
2136 4045 5.009010 CCAAACATGCCCTTACAGTATCATC 59.991 44.000 0.00 0.00 0.00 2.92
2137 4046 4.889409 CCAAACATGCCCTTACAGTATCAT 59.111 41.667 0.00 0.00 0.00 2.45
2138 4047 4.263727 ACCAAACATGCCCTTACAGTATCA 60.264 41.667 0.00 0.00 0.00 2.15
2139 4048 4.270008 ACCAAACATGCCCTTACAGTATC 58.730 43.478 0.00 0.00 0.00 2.24
2140 4049 4.316025 ACCAAACATGCCCTTACAGTAT 57.684 40.909 0.00 0.00 0.00 2.12
2141 4050 3.799432 ACCAAACATGCCCTTACAGTA 57.201 42.857 0.00 0.00 0.00 2.74
2142 4051 2.675658 ACCAAACATGCCCTTACAGT 57.324 45.000 0.00 0.00 0.00 3.55
2143 4052 3.320541 TGAAACCAAACATGCCCTTACAG 59.679 43.478 0.00 0.00 0.00 2.74
2144 4053 3.300388 TGAAACCAAACATGCCCTTACA 58.700 40.909 0.00 0.00 0.00 2.41
2145 4054 4.329462 TTGAAACCAAACATGCCCTTAC 57.671 40.909 0.00 0.00 0.00 2.34
2146 4055 5.559148 ATTTGAAACCAAACATGCCCTTA 57.441 34.783 0.00 0.00 36.48 2.69
2147 4056 3.922171 TTTGAAACCAAACATGCCCTT 57.078 38.095 0.00 0.00 0.00 3.95
2148 4057 5.071653 ACTTATTTGAAACCAAACATGCCCT 59.928 36.000 0.00 0.00 36.48 5.19
2149 4058 5.304778 ACTTATTTGAAACCAAACATGCCC 58.695 37.500 0.00 0.00 36.48 5.36
2150 4059 5.988561 TGACTTATTTGAAACCAAACATGCC 59.011 36.000 0.00 0.00 36.48 4.40
2151 4060 6.073819 GGTGACTTATTTGAAACCAAACATGC 60.074 38.462 0.00 0.00 36.48 4.06
2152 4061 6.983307 TGGTGACTTATTTGAAACCAAACATG 59.017 34.615 0.00 0.00 36.48 3.21
2153 4062 7.118496 TGGTGACTTATTTGAAACCAAACAT 57.882 32.000 0.00 0.00 36.48 2.71
2154 4063 6.531503 TGGTGACTTATTTGAAACCAAACA 57.468 33.333 0.00 0.00 36.48 2.83
2155 4064 7.039270 AGTTGGTGACTTATTTGAAACCAAAC 58.961 34.615 6.65 2.75 46.21 2.93
2156 4065 7.176589 AGTTGGTGACTTATTTGAAACCAAA 57.823 32.000 6.65 0.00 46.21 3.28
2157 4066 6.783708 AGTTGGTGACTTATTTGAAACCAA 57.216 33.333 1.07 1.07 43.50 3.67
2158 4067 6.783708 AAGTTGGTGACTTATTTGAAACCA 57.216 33.333 0.00 0.00 46.61 3.67
2170 4079 7.170998 CACTTTTCGACTTATAAGTTGGTGACT 59.829 37.037 25.99 9.24 39.88 3.41
2171 4080 7.288672 CACTTTTCGACTTATAAGTTGGTGAC 58.711 38.462 25.99 10.35 39.88 3.67
2172 4081 6.425721 CCACTTTTCGACTTATAAGTTGGTGA 59.574 38.462 26.00 17.35 39.88 4.02
2173 4082 6.425721 TCCACTTTTCGACTTATAAGTTGGTG 59.574 38.462 25.99 23.47 39.88 4.17
2174 4083 6.527423 TCCACTTTTCGACTTATAAGTTGGT 58.473 36.000 25.99 16.17 39.88 3.67
2175 4084 7.429636 TTCCACTTTTCGACTTATAAGTTGG 57.570 36.000 25.99 21.99 39.88 3.77
2176 4085 9.724839 TTTTTCCACTTTTCGACTTATAAGTTG 57.275 29.630 22.32 22.32 39.88 3.16
2201 4110 9.681692 GGGTACGTTTGACAAAATAAGTTATTT 57.318 29.630 13.95 13.95 39.92 1.40
2202 4111 8.848182 TGGGTACGTTTGACAAAATAAGTTATT 58.152 29.630 1.27 2.10 0.00 1.40
2203 4112 8.393671 TGGGTACGTTTGACAAAATAAGTTAT 57.606 30.769 1.27 0.00 0.00 1.89
2204 4113 7.798596 TGGGTACGTTTGACAAAATAAGTTA 57.201 32.000 1.27 0.00 0.00 2.24
2205 4114 6.696441 TGGGTACGTTTGACAAAATAAGTT 57.304 33.333 1.27 0.00 0.00 2.66
2206 4115 6.319405 AGTTGGGTACGTTTGACAAAATAAGT 59.681 34.615 1.27 3.90 0.00 2.24
2207 4116 6.731164 AGTTGGGTACGTTTGACAAAATAAG 58.269 36.000 1.27 0.00 0.00 1.73
2208 4117 6.696441 AGTTGGGTACGTTTGACAAAATAA 57.304 33.333 1.27 0.00 0.00 1.40
2209 4118 6.696441 AAGTTGGGTACGTTTGACAAAATA 57.304 33.333 1.27 0.00 0.00 1.40
2210 4119 5.585820 AAGTTGGGTACGTTTGACAAAAT 57.414 34.783 1.27 0.00 0.00 1.82
2211 4120 6.696441 ATAAGTTGGGTACGTTTGACAAAA 57.304 33.333 1.27 0.00 0.00 2.44
2212 4121 7.498570 ACTTATAAGTTGGGTACGTTTGACAAA 59.501 33.333 12.50 0.00 35.21 2.83
2213 4122 6.991531 ACTTATAAGTTGGGTACGTTTGACAA 59.008 34.615 12.50 0.00 35.21 3.18
2214 4123 6.523840 ACTTATAAGTTGGGTACGTTTGACA 58.476 36.000 12.50 0.00 35.21 3.58
2215 4124 6.646240 TGACTTATAAGTTGGGTACGTTTGAC 59.354 38.462 18.96 2.46 39.88 3.18
2216 4125 6.646240 GTGACTTATAAGTTGGGTACGTTTGA 59.354 38.462 18.96 0.00 39.88 2.69
2217 4126 6.128472 GGTGACTTATAAGTTGGGTACGTTTG 60.128 42.308 18.96 0.00 39.88 2.93
2218 4127 5.934043 GGTGACTTATAAGTTGGGTACGTTT 59.066 40.000 18.96 0.00 39.88 3.60
2219 4128 5.482006 GGTGACTTATAAGTTGGGTACGTT 58.518 41.667 18.96 0.00 39.88 3.99
2220 4129 4.081476 GGGTGACTTATAAGTTGGGTACGT 60.081 45.833 18.96 0.00 39.88 3.57
2221 4130 4.436332 GGGTGACTTATAAGTTGGGTACG 58.564 47.826 18.96 0.00 39.88 3.67
2222 4131 4.225717 TGGGGTGACTTATAAGTTGGGTAC 59.774 45.833 18.96 12.44 39.88 3.34
2223 4132 4.437023 TGGGGTGACTTATAAGTTGGGTA 58.563 43.478 18.96 3.05 39.88 3.69
2224 4133 3.261962 TGGGGTGACTTATAAGTTGGGT 58.738 45.455 18.96 0.00 39.88 4.51
2225 4134 4.014406 GTTGGGGTGACTTATAAGTTGGG 58.986 47.826 18.96 0.00 39.88 4.12
2226 4135 4.918588 AGTTGGGGTGACTTATAAGTTGG 58.081 43.478 18.96 0.00 39.88 3.77
2227 4136 6.598064 CCTAAGTTGGGGTGACTTATAAGTTG 59.402 42.308 18.96 0.00 39.88 3.16
2228 4137 6.296836 CCCTAAGTTGGGGTGACTTATAAGTT 60.297 42.308 18.96 3.63 43.45 2.66
2229 4138 5.191124 CCCTAAGTTGGGGTGACTTATAAGT 59.809 44.000 18.05 18.05 43.45 2.24
2230 4139 5.681639 CCCTAAGTTGGGGTGACTTATAAG 58.318 45.833 16.13 11.05 43.45 1.73
2231 4140 5.703730 CCCTAAGTTGGGGTGACTTATAA 57.296 43.478 16.13 0.00 43.45 0.98
2243 4152 1.256812 CCAAACAGGCCCTAAGTTGG 58.743 55.000 0.00 2.76 0.00 3.77
2244 4153 1.995376 ACCAAACAGGCCCTAAGTTG 58.005 50.000 0.00 0.00 43.14 3.16
2245 4154 2.767644 AACCAAACAGGCCCTAAGTT 57.232 45.000 0.00 0.00 43.14 2.66
2246 4155 2.091555 TGAAACCAAACAGGCCCTAAGT 60.092 45.455 0.00 0.00 43.14 2.24
2247 4156 2.593026 TGAAACCAAACAGGCCCTAAG 58.407 47.619 0.00 0.00 43.14 2.18
2248 4157 2.757894 TGAAACCAAACAGGCCCTAA 57.242 45.000 0.00 0.00 43.14 2.69
2249 4158 2.757894 TTGAAACCAAACAGGCCCTA 57.242 45.000 0.00 0.00 43.14 3.53
2250 4159 2.101640 ATTGAAACCAAACAGGCCCT 57.898 45.000 0.00 0.00 43.14 5.19
2251 4160 3.323691 ACTTATTGAAACCAAACAGGCCC 59.676 43.478 0.00 0.00 43.14 5.80
2252 4161 4.038642 TGACTTATTGAAACCAAACAGGCC 59.961 41.667 0.00 0.00 43.14 5.19
2253 4162 4.982295 GTGACTTATTGAAACCAAACAGGC 59.018 41.667 0.00 0.00 43.14 4.85
2254 4163 5.301805 AGGTGACTTATTGAAACCAAACAGG 59.698 40.000 0.00 0.00 40.62 4.00
2255 4164 6.039270 TGAGGTGACTTATTGAAACCAAACAG 59.961 38.462 0.00 0.00 44.43 3.16
2256 4165 5.888724 TGAGGTGACTTATTGAAACCAAACA 59.111 36.000 0.00 0.00 44.43 2.83
2257 4166 6.039382 AGTGAGGTGACTTATTGAAACCAAAC 59.961 38.462 0.00 0.00 44.43 2.93
2258 4167 6.126409 AGTGAGGTGACTTATTGAAACCAAA 58.874 36.000 0.00 0.00 44.43 3.28
2259 4168 5.690865 AGTGAGGTGACTTATTGAAACCAA 58.309 37.500 0.00 0.00 44.43 3.67
2260 4169 5.304686 AGTGAGGTGACTTATTGAAACCA 57.695 39.130 0.00 0.00 44.43 3.67
2261 4170 7.923414 ATAAGTGAGGTGACTTATTGAAACC 57.077 36.000 0.00 0.00 43.60 3.27
2264 4173 9.871238 GACTTATAAGTGAGGTGACTTATTGAA 57.129 33.333 22.68 0.00 43.60 2.69
2265 4174 9.031537 TGACTTATAAGTGAGGTGACTTATTGA 57.968 33.333 22.68 0.00 43.60 2.57
2266 4175 9.307121 CTGACTTATAAGTGAGGTGACTTATTG 57.693 37.037 22.68 4.58 43.60 1.90
2288 4197 4.272748 GTCACTGGTTTTAAGTCACCTGAC 59.727 45.833 11.87 0.00 45.08 3.51
2289 4198 4.163458 AGTCACTGGTTTTAAGTCACCTGA 59.837 41.667 11.87 3.02 35.95 3.86
2290 4199 4.451900 AGTCACTGGTTTTAAGTCACCTG 58.548 43.478 6.12 6.12 37.86 4.00
2291 4200 4.772886 AGTCACTGGTTTTAAGTCACCT 57.227 40.909 3.10 0.00 33.76 4.00
2292 4201 8.611654 TTATAAGTCACTGGTTTTAAGTCACC 57.388 34.615 0.00 0.00 0.00 4.02
2293 4202 9.269453 ACTTATAAGTCACTGGTTTTAAGTCAC 57.731 33.333 12.50 0.00 32.86 3.67
2310 4219 5.850614 ACCAAACAGACGTGACTTATAAGT 58.149 37.500 18.05 18.05 43.16 2.24
2311 4220 6.202188 ACAACCAAACAGACGTGACTTATAAG 59.798 38.462 11.05 11.05 0.00 1.73
2312 4221 6.050432 ACAACCAAACAGACGTGACTTATAA 58.950 36.000 0.00 0.00 0.00 0.98
2313 4222 5.603596 ACAACCAAACAGACGTGACTTATA 58.396 37.500 0.00 0.00 0.00 0.98
2314 4223 4.448210 ACAACCAAACAGACGTGACTTAT 58.552 39.130 0.00 0.00 0.00 1.73
2315 4224 3.864243 ACAACCAAACAGACGTGACTTA 58.136 40.909 0.00 0.00 0.00 2.24
2316 4225 2.676342 GACAACCAAACAGACGTGACTT 59.324 45.455 0.00 0.00 0.00 3.01
2317 4226 2.277084 GACAACCAAACAGACGTGACT 58.723 47.619 0.00 0.00 0.00 3.41
2318 4227 2.004017 TGACAACCAAACAGACGTGAC 58.996 47.619 0.00 0.00 0.00 3.67
2319 4228 2.004017 GTGACAACCAAACAGACGTGA 58.996 47.619 0.00 0.00 0.00 4.35
2320 4229 1.063469 GGTGACAACCAAACAGACGTG 59.937 52.381 0.00 0.00 46.75 4.49
2321 4230 1.375551 GGTGACAACCAAACAGACGT 58.624 50.000 0.00 0.00 46.75 4.34
2335 4244 3.380004 TGTGGAAAAATGTGTCAGGTGAC 59.620 43.478 2.99 2.99 44.97 3.67
2336 4245 3.380004 GTGTGGAAAAATGTGTCAGGTGA 59.620 43.478 0.00 0.00 0.00 4.02
2337 4246 3.490761 GGTGTGGAAAAATGTGTCAGGTG 60.491 47.826 0.00 0.00 0.00 4.00
2338 4247 2.693074 GGTGTGGAAAAATGTGTCAGGT 59.307 45.455 0.00 0.00 0.00 4.00
2339 4248 2.692557 TGGTGTGGAAAAATGTGTCAGG 59.307 45.455 0.00 0.00 0.00 3.86
2340 4249 4.383850 TTGGTGTGGAAAAATGTGTCAG 57.616 40.909 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.