Multiple sequence alignment - TraesCS3B01G120300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G120300 chr3B 100.000 3325 0 0 477 3801 90164700 90168024 0.000000e+00 6141.0
1 TraesCS3B01G120300 chr3B 100.000 150 0 0 1 150 90164224 90164373 1.040000e-70 278.0
2 TraesCS3B01G120300 chr3B 96.875 32 1 0 511 542 305529101 305529132 2.000000e-03 54.7
3 TraesCS3B01G120300 chr3A 95.162 1695 62 13 1049 2731 66353455 66355141 0.000000e+00 2658.0
4 TraesCS3B01G120300 chr3A 83.702 362 57 2 3434 3794 21329103 21328743 1.310000e-89 340.0
5 TraesCS3B01G120300 chr3A 97.576 165 4 0 706 870 66353178 66353342 2.240000e-72 283.0
6 TraesCS3B01G120300 chr3A 77.912 498 81 18 3323 3792 72420977 72421473 2.240000e-72 283.0
7 TraesCS3B01G120300 chr3A 89.143 175 18 1 549 723 66352682 66352855 2.300000e-52 217.0
8 TraesCS3B01G120300 chr3A 92.453 106 8 0 908 1013 66353342 66353447 6.580000e-33 152.0
9 TraesCS3B01G120300 chr3D 94.155 1112 65 0 1621 2732 57234961 57236072 0.000000e+00 1694.0
10 TraesCS3B01G120300 chr3D 92.120 533 34 4 1050 1574 57233944 57234476 0.000000e+00 745.0
11 TraesCS3B01G120300 chr3D 89.054 539 37 10 479 1013 57233419 57233939 0.000000e+00 649.0
12 TraesCS3B01G120300 chr3D 75.325 847 165 34 2968 3785 512624028 512624859 2.160000e-97 366.0
13 TraesCS3B01G120300 chr3D 81.111 360 65 3 3437 3794 391244914 391244556 6.210000e-73 285.0
14 TraesCS3B01G120300 chr3D 78.333 120 25 1 481 599 254104428 254104547 4.070000e-10 76.8
15 TraesCS3B01G120300 chr2D 74.974 979 187 34 2849 3788 405604481 405603522 7.650000e-107 398.0
16 TraesCS3B01G120300 chr2D 74.772 329 62 12 3206 3518 304714882 304715205 1.110000e-25 128.0
17 TraesCS3B01G120300 chr1B 83.099 426 71 1 1150 1574 670187767 670187342 1.660000e-103 387.0
18 TraesCS3B01G120300 chr4A 81.742 356 64 1 3434 3788 36345241 36345596 2.870000e-76 296.0
19 TraesCS3B01G120300 chr4A 78.220 427 83 9 1145 1568 662325154 662325573 8.100000e-67 265.0
20 TraesCS3B01G120300 chr4A 75.874 572 103 19 3254 3794 582473275 582472708 3.770000e-65 259.0
21 TraesCS3B01G120300 chr7A 78.661 478 75 18 3340 3793 115264376 115263902 3.710000e-75 292.0
22 TraesCS3B01G120300 chr7A 78.520 419 80 8 1154 1568 50113940 50114352 2.250000e-67 267.0
23 TraesCS3B01G120300 chr7A 100.000 33 0 0 2849 2881 26824461 26824493 1.140000e-05 62.1
24 TraesCS3B01G120300 chr7A 100.000 33 0 0 2849 2881 26824547 26824579 1.140000e-05 62.1
25 TraesCS3B01G120300 chr7D 78.465 469 79 14 3340 3788 139253098 139253564 1.730000e-73 287.0
26 TraesCS3B01G120300 chr7D 78.571 420 78 12 1154 1568 47403415 47403003 2.250000e-67 267.0
27 TraesCS3B01G120300 chr4D 80.939 362 66 3 3434 3794 468405941 468406300 2.240000e-72 283.0
28 TraesCS3B01G120300 chr7B 75.910 577 98 27 3075 3633 418733205 418732652 1.350000e-64 257.0
29 TraesCS3B01G120300 chrUn 82.427 239 37 5 1145 1381 296183013 296183248 1.790000e-48 204.0
30 TraesCS3B01G120300 chr2B 75.305 328 61 9 3207 3519 373348327 373348649 5.120000e-29 139.0
31 TraesCS3B01G120300 chr5D 72.470 247 55 11 1635 1876 341076413 341076175 2.450000e-07 67.6
32 TraesCS3B01G120300 chr5B 95.122 41 2 0 1635 1675 400563840 400563800 8.810000e-07 65.8
33 TraesCS3B01G120300 chr5A 95.122 41 2 0 1635 1675 442291938 442291898 8.810000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G120300 chr3B 90164224 90168024 3800 False 3209.500000 6141 100.000000 1 3801 2 chr3B.!!$F2 3800
1 TraesCS3B01G120300 chr3A 66352682 66355141 2459 False 827.500000 2658 93.583500 549 2731 4 chr3A.!!$F2 2182
2 TraesCS3B01G120300 chr3D 57233419 57236072 2653 False 1029.333333 1694 91.776333 479 2732 3 chr3D.!!$F3 2253
3 TraesCS3B01G120300 chr3D 512624028 512624859 831 False 366.000000 366 75.325000 2968 3785 1 chr3D.!!$F2 817
4 TraesCS3B01G120300 chr2D 405603522 405604481 959 True 398.000000 398 74.974000 2849 3788 1 chr2D.!!$R1 939
5 TraesCS3B01G120300 chr4A 582472708 582473275 567 True 259.000000 259 75.874000 3254 3794 1 chr4A.!!$R1 540
6 TraesCS3B01G120300 chr7B 418732652 418733205 553 True 257.000000 257 75.910000 3075 3633 1 chr7B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.037882 ACGTCTGGTCTGCTGACATG 60.038 55.0 23.12 15.14 44.61 3.21 F
1031 1375 0.035820 TGGACGCGGATTAAAGCCTT 60.036 50.0 12.47 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1426 0.029167 GTACGTCCCGAAGCTAGAGC 59.971 60.0 0.0 0.0 42.49 4.09 R
2998 3788 0.394488 TGTCCCGACACCTGCAAAAA 60.394 50.0 0.0 0.0 36.21 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.353600 TCGGCCTTTGCACATGTG 58.646 55.556 21.83 21.83 40.13 3.21
27 28 3.909662 CACATGTGCTGGGTAGGC 58.090 61.111 13.94 0.00 0.00 3.93
28 29 1.002257 CACATGTGCTGGGTAGGCA 60.002 57.895 13.94 0.00 37.36 4.75
29 30 1.028330 CACATGTGCTGGGTAGGCAG 61.028 60.000 13.94 0.00 40.54 4.85
30 31 1.200760 ACATGTGCTGGGTAGGCAGA 61.201 55.000 0.00 0.00 40.54 4.26
31 32 0.745845 CATGTGCTGGGTAGGCAGAC 60.746 60.000 0.00 0.00 40.54 3.51
32 33 2.125512 GTGCTGGGTAGGCAGACG 60.126 66.667 0.00 0.00 40.54 4.18
33 34 2.603473 TGCTGGGTAGGCAGACGT 60.603 61.111 0.00 0.00 34.56 4.34
34 35 2.184579 GCTGGGTAGGCAGACGTC 59.815 66.667 7.70 7.70 0.00 4.34
35 36 2.352032 GCTGGGTAGGCAGACGTCT 61.352 63.158 13.58 13.58 0.00 4.18
36 37 1.513158 CTGGGTAGGCAGACGTCTG 59.487 63.158 35.80 35.80 46.40 3.51
37 38 1.949847 CTGGGTAGGCAGACGTCTGG 61.950 65.000 38.72 24.14 43.94 3.86
38 39 1.982938 GGGTAGGCAGACGTCTGGT 60.983 63.158 38.72 8.91 43.94 4.00
39 40 1.511768 GGTAGGCAGACGTCTGGTC 59.488 63.158 38.72 26.08 46.45 4.02
46 47 4.561731 GACGTCTGGTCTGCTGAC 57.438 61.111 14.87 14.87 42.62 3.51
47 48 1.660355 GACGTCTGGTCTGCTGACA 59.340 57.895 23.12 10.05 44.61 3.58
48 49 0.244994 GACGTCTGGTCTGCTGACAT 59.755 55.000 23.12 3.40 44.61 3.06
49 50 0.037882 ACGTCTGGTCTGCTGACATG 60.038 55.000 23.12 15.14 44.61 3.21
50 51 0.244721 CGTCTGGTCTGCTGACATGA 59.755 55.000 23.12 16.91 44.61 3.07
51 52 1.337167 CGTCTGGTCTGCTGACATGAA 60.337 52.381 23.12 6.75 44.61 2.57
52 53 2.676176 CGTCTGGTCTGCTGACATGAAT 60.676 50.000 23.12 0.00 44.61 2.57
53 54 2.676839 GTCTGGTCTGCTGACATGAATG 59.323 50.000 23.12 7.90 44.61 2.67
54 55 1.400846 CTGGTCTGCTGACATGAATGC 59.599 52.381 23.12 6.52 44.61 3.56
55 56 1.271488 TGGTCTGCTGACATGAATGCA 60.271 47.619 23.12 8.86 44.61 3.96
56 57 2.022195 GGTCTGCTGACATGAATGCAT 58.978 47.619 23.12 0.00 44.61 3.96
68 69 4.357142 CATGAATGCATGTAGGAAGTTGC 58.643 43.478 5.39 0.00 45.41 4.17
69 70 2.754552 TGAATGCATGTAGGAAGTTGCC 59.245 45.455 0.00 0.00 34.20 4.52
70 71 1.767759 ATGCATGTAGGAAGTTGCCC 58.232 50.000 0.00 0.00 34.20 5.36
71 72 0.698238 TGCATGTAGGAAGTTGCCCT 59.302 50.000 0.00 0.00 37.80 5.19
72 73 1.098050 GCATGTAGGAAGTTGCCCTG 58.902 55.000 0.00 0.00 35.30 4.45
73 74 1.614317 GCATGTAGGAAGTTGCCCTGT 60.614 52.381 0.00 0.00 35.30 4.00
74 75 2.359900 CATGTAGGAAGTTGCCCTGTC 58.640 52.381 0.00 0.00 35.30 3.51
75 76 0.690762 TGTAGGAAGTTGCCCTGTCC 59.309 55.000 0.00 0.00 35.30 4.02
76 77 0.391263 GTAGGAAGTTGCCCTGTCCG 60.391 60.000 0.00 0.00 35.19 4.79
77 78 1.550130 TAGGAAGTTGCCCTGTCCGG 61.550 60.000 0.00 0.00 35.19 5.14
78 79 2.430367 GAAGTTGCCCTGTCCGGT 59.570 61.111 0.00 0.00 0.00 5.28
79 80 1.671379 GAAGTTGCCCTGTCCGGTC 60.671 63.158 0.00 0.00 0.00 4.79
80 81 2.391724 GAAGTTGCCCTGTCCGGTCA 62.392 60.000 0.00 0.00 0.00 4.02
81 82 2.668550 GTTGCCCTGTCCGGTCAC 60.669 66.667 0.00 0.00 0.00 3.67
82 83 4.308458 TTGCCCTGTCCGGTCACG 62.308 66.667 0.00 0.00 40.55 4.35
84 85 4.736896 GCCCTGTCCGGTCACGTC 62.737 72.222 0.00 0.00 38.78 4.34
85 86 4.065281 CCCTGTCCGGTCACGTCC 62.065 72.222 0.00 0.00 38.78 4.79
92 93 2.026445 CGGTCACGTCCGTTGTGA 59.974 61.111 7.49 0.00 44.77 3.58
95 96 3.208335 TCACGTCCGTTGTGACCA 58.792 55.556 0.00 0.00 41.20 4.02
96 97 1.516423 TCACGTCCGTTGTGACCAA 59.484 52.632 0.00 0.00 41.20 3.67
97 98 0.806884 TCACGTCCGTTGTGACCAAC 60.807 55.000 0.00 0.00 46.09 3.77
105 106 3.817187 TTGTGACCAACAGGATGCA 57.183 47.368 0.00 0.00 42.53 3.96
106 107 1.608055 TTGTGACCAACAGGATGCAG 58.392 50.000 0.00 0.00 42.53 4.41
107 108 0.473755 TGTGACCAACAGGATGCAGT 59.526 50.000 0.00 0.00 42.53 4.40
108 109 0.877071 GTGACCAACAGGATGCAGTG 59.123 55.000 0.00 0.00 42.53 3.66
109 110 0.890542 TGACCAACAGGATGCAGTGC 60.891 55.000 8.58 8.58 42.53 4.40
110 111 1.915614 GACCAACAGGATGCAGTGCG 61.916 60.000 11.20 0.00 42.53 5.34
111 112 2.693762 CCAACAGGATGCAGTGCGG 61.694 63.158 11.20 0.00 42.53 5.69
112 113 1.672030 CAACAGGATGCAGTGCGGA 60.672 57.895 11.20 0.00 42.53 5.54
113 114 1.073025 AACAGGATGCAGTGCGGAA 59.927 52.632 11.20 0.00 42.53 4.30
114 115 0.537143 AACAGGATGCAGTGCGGAAA 60.537 50.000 11.20 0.00 42.53 3.13
115 116 0.957395 ACAGGATGCAGTGCGGAAAG 60.957 55.000 11.20 2.88 42.53 2.62
136 137 4.838486 GTGGACGCGGCGAGAGAG 62.838 72.222 30.94 0.00 0.00 3.20
139 140 4.838486 GACGCGGCGAGAGAGGTG 62.838 72.222 30.94 0.00 0.00 4.00
142 143 4.070552 GCGGCGAGAGAGGTGGTT 62.071 66.667 12.98 0.00 0.00 3.67
143 144 2.657237 CGGCGAGAGAGGTGGTTT 59.343 61.111 0.00 0.00 0.00 3.27
144 145 1.004918 CGGCGAGAGAGGTGGTTTT 60.005 57.895 0.00 0.00 0.00 2.43
145 146 1.291877 CGGCGAGAGAGGTGGTTTTG 61.292 60.000 0.00 0.00 0.00 2.44
146 147 0.955919 GGCGAGAGAGGTGGTTTTGG 60.956 60.000 0.00 0.00 0.00 3.28
147 148 0.955919 GCGAGAGAGGTGGTTTTGGG 60.956 60.000 0.00 0.00 0.00 4.12
148 149 0.396811 CGAGAGAGGTGGTTTTGGGT 59.603 55.000 0.00 0.00 0.00 4.51
149 150 1.608283 CGAGAGAGGTGGTTTTGGGTC 60.608 57.143 0.00 0.00 0.00 4.46
497 498 3.827722 TGAAATTTTGGACTTCCGGACT 58.172 40.909 1.83 0.00 39.43 3.85
506 507 1.871676 GACTTCCGGACTTGTTTGGAC 59.128 52.381 1.83 0.00 0.00 4.02
512 513 4.462133 TCCGGACTTGTTTGGACAAATTA 58.538 39.130 0.00 0.00 44.65 1.40
519 520 5.068591 ACTTGTTTGGACAAATTAGGTGACC 59.931 40.000 0.00 0.00 44.65 4.02
561 563 5.386958 TGTTCGCTCTGTACAGTTTAGAT 57.613 39.130 21.99 0.00 0.00 1.98
562 564 5.161358 TGTTCGCTCTGTACAGTTTAGATG 58.839 41.667 21.99 9.01 0.00 2.90
571 573 5.493809 TGTACAGTTTAGATGTTTAGGGGC 58.506 41.667 0.00 0.00 32.02 5.80
583 585 2.051334 TTAGGGGCGATTTGGTGATG 57.949 50.000 0.00 0.00 0.00 3.07
589 591 0.794229 GCGATTTGGTGATGCGTGTG 60.794 55.000 0.00 0.00 0.00 3.82
599 601 3.490031 ATGCGTGTGGGAGTTGCCA 62.490 57.895 0.00 0.00 38.95 4.92
630 632 4.165779 GTGTATTTGTGCAATTTCCTCCG 58.834 43.478 0.00 0.00 0.00 4.63
653 657 7.886446 TCCGACCTTTTATTTTTCTACAGGATT 59.114 33.333 0.00 0.00 0.00 3.01
669 673 4.263905 ACAGGATTTGCAGTCCTCCATTTA 60.264 41.667 17.21 0.00 44.18 1.40
704 708 1.956477 CATTTTATCCAAGGAGGGCCG 59.044 52.381 0.00 0.00 39.96 6.13
882 1226 1.233019 ATGACTGCATCGCATTAGCC 58.767 50.000 0.00 0.00 38.13 3.93
917 1261 0.806492 GAAGGGCTGGAACGACGATC 60.806 60.000 0.00 0.00 0.00 3.69
977 1321 0.833834 AGTGCACAGTACAGAGCCCT 60.834 55.000 21.04 0.00 0.00 5.19
987 1331 1.153469 CAGAGCCCTTCCGAGAAGC 60.153 63.158 7.82 0.59 0.00 3.86
993 1337 2.124942 CTTCCGAGAAGCCAGCCC 60.125 66.667 1.49 0.00 0.00 5.19
1006 1350 1.226888 CAGCCCCGCTACGTTAGTC 60.227 63.158 0.00 0.00 36.40 2.59
1027 1371 3.319238 GTCAATGGACGCGGATTAAAG 57.681 47.619 12.47 0.00 33.68 1.85
1028 1372 1.668751 TCAATGGACGCGGATTAAAGC 59.331 47.619 12.47 0.00 0.00 3.51
1029 1373 1.021968 AATGGACGCGGATTAAAGCC 58.978 50.000 12.47 0.00 0.00 4.35
1030 1374 0.180406 ATGGACGCGGATTAAAGCCT 59.820 50.000 12.47 0.00 0.00 4.58
1031 1375 0.035820 TGGACGCGGATTAAAGCCTT 60.036 50.000 12.47 0.00 0.00 4.35
1032 1376 0.377203 GGACGCGGATTAAAGCCTTG 59.623 55.000 12.47 0.00 0.00 3.61
1033 1377 1.084289 GACGCGGATTAAAGCCTTGT 58.916 50.000 12.47 0.00 0.00 3.16
1034 1378 1.467342 GACGCGGATTAAAGCCTTGTT 59.533 47.619 12.47 0.00 0.00 2.83
1035 1379 1.199097 ACGCGGATTAAAGCCTTGTTG 59.801 47.619 12.47 0.00 0.00 3.33
1036 1380 1.467374 CGCGGATTAAAGCCTTGTTGG 60.467 52.381 0.00 0.00 39.35 3.77
1037 1381 1.816224 GCGGATTAAAGCCTTGTTGGA 59.184 47.619 0.00 0.00 38.35 3.53
1038 1382 2.159379 GCGGATTAAAGCCTTGTTGGAG 60.159 50.000 0.00 0.00 38.35 3.86
1039 1383 3.081804 CGGATTAAAGCCTTGTTGGAGT 58.918 45.455 0.00 0.00 38.35 3.85
1040 1384 3.506067 CGGATTAAAGCCTTGTTGGAGTT 59.494 43.478 0.00 0.00 38.35 3.01
1041 1385 4.615912 CGGATTAAAGCCTTGTTGGAGTTG 60.616 45.833 0.00 0.00 38.35 3.16
1042 1386 3.726291 TTAAAGCCTTGTTGGAGTTGC 57.274 42.857 0.00 0.00 38.35 4.17
1043 1387 0.752658 AAAGCCTTGTTGGAGTTGCC 59.247 50.000 0.00 0.00 38.35 4.52
1051 1395 4.498346 TGGAGTTGCCATGGTGTG 57.502 55.556 14.67 0.00 43.33 3.82
1052 1396 1.536180 TGGAGTTGCCATGGTGTGT 59.464 52.632 14.67 0.00 43.33 3.72
1055 1399 2.146073 GAGTTGCCATGGTGTGTGCC 62.146 60.000 14.67 0.00 0.00 5.01
1058 1402 3.376078 GCCATGGTGTGTGCCAGG 61.376 66.667 14.67 0.00 42.47 4.45
1061 1405 1.904865 CATGGTGTGTGCCAGGCTT 60.905 57.895 14.15 0.00 42.47 4.35
1082 1426 2.762887 TGAGTCAGATACCAAGCTCCTG 59.237 50.000 0.00 0.00 0.00 3.86
1094 1438 1.067250 GCTCCTGCTCTAGCTTCGG 59.933 63.158 3.26 1.88 42.66 4.30
1294 1646 2.709125 CTTCTTCCCGGACGTGCACA 62.709 60.000 18.64 0.00 0.00 4.57
1392 1744 2.439701 TACGTCTCGGGGCTCCTG 60.440 66.667 0.00 0.00 0.00 3.86
1574 1926 1.069227 GTTCGCCAATCAGGTCACAAC 60.069 52.381 0.00 0.00 40.61 3.32
1584 1936 6.762661 CCAATCAGGTCACAACAAGAAATTTT 59.237 34.615 0.00 0.00 0.00 1.82
1856 2646 1.617018 CCATCTTCCTGCCGGAGACA 61.617 60.000 5.05 0.00 41.25 3.41
1859 2649 2.203788 TTCCTGCCGGAGACACCT 60.204 61.111 5.05 0.00 41.25 4.00
1877 2667 0.459237 CTAACAGCCTCGTCCAGCAG 60.459 60.000 0.00 0.00 0.00 4.24
2192 2982 4.477975 GTCTCCTCCGCGTCCACG 62.478 72.222 4.92 0.00 43.27 4.94
2216 3006 1.736586 GTCCATGCTCCTCGTCGAT 59.263 57.895 0.00 0.00 0.00 3.59
2237 3027 2.920912 TTCGGGAGGCGGACACTT 60.921 61.111 0.00 0.00 0.00 3.16
2241 3031 2.283529 GGGAGGCGGACACTTCTCA 61.284 63.158 0.00 0.00 0.00 3.27
2422 3212 2.808315 CTGGCTGATACCGAGCGT 59.192 61.111 0.00 0.00 37.32 5.07
2487 3277 2.785105 GCGTCGGGATTCGTGTTCG 61.785 63.158 0.00 0.00 40.32 3.95
2553 3343 1.134220 AGGCGTGGTTGTTCTTCTTCA 60.134 47.619 0.00 0.00 0.00 3.02
2732 3522 3.220674 AGCTGCTTCCACTTTCTTTCT 57.779 42.857 0.00 0.00 0.00 2.52
2733 3523 4.357918 AGCTGCTTCCACTTTCTTTCTA 57.642 40.909 0.00 0.00 0.00 2.10
2734 3524 4.916183 AGCTGCTTCCACTTTCTTTCTAT 58.084 39.130 0.00 0.00 0.00 1.98
2735 3525 4.699257 AGCTGCTTCCACTTTCTTTCTATG 59.301 41.667 0.00 0.00 0.00 2.23
2736 3526 4.673841 GCTGCTTCCACTTTCTTTCTATGC 60.674 45.833 0.00 0.00 0.00 3.14
2737 3527 4.397420 TGCTTCCACTTTCTTTCTATGCA 58.603 39.130 0.00 0.00 0.00 3.96
2738 3528 5.012239 TGCTTCCACTTTCTTTCTATGCAT 58.988 37.500 3.79 3.79 0.00 3.96
2739 3529 5.124457 TGCTTCCACTTTCTTTCTATGCATC 59.876 40.000 0.19 0.00 0.00 3.91
2740 3530 5.124457 GCTTCCACTTTCTTTCTATGCATCA 59.876 40.000 0.19 0.00 0.00 3.07
2741 3531 6.349611 GCTTCCACTTTCTTTCTATGCATCAA 60.350 38.462 0.19 0.00 0.00 2.57
2742 3532 6.500684 TCCACTTTCTTTCTATGCATCAAC 57.499 37.500 0.19 0.00 0.00 3.18
2743 3533 6.003326 TCCACTTTCTTTCTATGCATCAACA 58.997 36.000 0.19 0.00 0.00 3.33
2744 3534 6.072508 TCCACTTTCTTTCTATGCATCAACAC 60.073 38.462 0.19 0.00 0.00 3.32
2745 3535 5.791974 CACTTTCTTTCTATGCATCAACACG 59.208 40.000 0.19 0.00 0.00 4.49
2746 3536 5.700832 ACTTTCTTTCTATGCATCAACACGA 59.299 36.000 0.19 0.00 0.00 4.35
2747 3537 6.372659 ACTTTCTTTCTATGCATCAACACGAT 59.627 34.615 0.19 0.00 33.27 3.73
2748 3538 5.973651 TCTTTCTATGCATCAACACGATC 57.026 39.130 0.19 0.00 29.21 3.69
2749 3539 5.664457 TCTTTCTATGCATCAACACGATCT 58.336 37.500 0.19 0.00 29.21 2.75
2750 3540 5.521372 TCTTTCTATGCATCAACACGATCTG 59.479 40.000 0.19 0.00 29.21 2.90
2751 3541 4.654091 TCTATGCATCAACACGATCTGA 57.346 40.909 0.19 0.00 29.21 3.27
2752 3542 4.614946 TCTATGCATCAACACGATCTGAG 58.385 43.478 0.19 0.00 29.21 3.35
2753 3543 3.531934 ATGCATCAACACGATCTGAGA 57.468 42.857 0.00 0.00 29.21 3.27
2754 3544 2.884827 TGCATCAACACGATCTGAGAG 58.115 47.619 0.00 0.00 29.21 3.20
2755 3545 1.592081 GCATCAACACGATCTGAGAGC 59.408 52.381 0.00 0.00 29.21 4.09
2756 3546 2.738000 GCATCAACACGATCTGAGAGCT 60.738 50.000 0.00 0.00 29.21 4.09
2757 3547 3.489908 GCATCAACACGATCTGAGAGCTA 60.490 47.826 0.00 0.00 29.21 3.32
2758 3548 3.766676 TCAACACGATCTGAGAGCTAC 57.233 47.619 0.00 0.00 0.00 3.58
2759 3549 3.348119 TCAACACGATCTGAGAGCTACT 58.652 45.455 0.00 0.00 0.00 2.57
2760 3550 3.375610 TCAACACGATCTGAGAGCTACTC 59.624 47.826 0.00 6.31 45.11 2.59
2761 3551 8.327513 CATCAACACGATCTGAGAGCTACTCA 62.328 46.154 13.11 13.11 41.93 3.41
2762 3552 9.691624 CATCAACACGATCTGAGAGCTACTCAA 62.692 44.444 14.23 8.12 42.80 3.02
2769 3559 2.553079 GAGAGCTACTCAAGACACCG 57.447 55.000 7.93 0.00 44.36 4.94
2770 3560 2.085320 GAGAGCTACTCAAGACACCGA 58.915 52.381 7.93 0.00 44.36 4.69
2771 3561 2.088423 AGAGCTACTCAAGACACCGAG 58.912 52.381 0.00 0.00 32.06 4.63
2772 3562 1.133407 GAGCTACTCAAGACACCGAGG 59.867 57.143 0.00 0.00 33.36 4.63
2773 3563 1.174783 GCTACTCAAGACACCGAGGA 58.825 55.000 0.00 0.00 33.36 3.71
2774 3564 1.751924 GCTACTCAAGACACCGAGGAT 59.248 52.381 0.00 0.00 33.36 3.24
2775 3565 2.480416 GCTACTCAAGACACCGAGGATG 60.480 54.545 0.00 0.00 33.36 3.51
2776 3566 1.633774 ACTCAAGACACCGAGGATGT 58.366 50.000 0.00 0.00 33.36 3.06
2777 3567 2.803956 ACTCAAGACACCGAGGATGTA 58.196 47.619 0.00 0.00 33.36 2.29
2778 3568 2.492484 ACTCAAGACACCGAGGATGTAC 59.508 50.000 0.00 0.00 33.36 2.90
2779 3569 2.492088 CTCAAGACACCGAGGATGTACA 59.508 50.000 0.00 0.00 0.00 2.90
2780 3570 2.230508 TCAAGACACCGAGGATGTACAC 59.769 50.000 0.00 0.00 0.00 2.90
2781 3571 1.919240 AGACACCGAGGATGTACACA 58.081 50.000 0.00 0.00 0.00 3.72
2782 3572 2.244695 AGACACCGAGGATGTACACAA 58.755 47.619 0.00 0.00 0.00 3.33
2783 3573 2.832129 AGACACCGAGGATGTACACAAT 59.168 45.455 0.00 0.00 0.00 2.71
2784 3574 3.119101 AGACACCGAGGATGTACACAATC 60.119 47.826 0.00 0.00 0.00 2.67
2785 3575 2.565391 ACACCGAGGATGTACACAATCA 59.435 45.455 0.00 0.00 0.00 2.57
2786 3576 3.007506 ACACCGAGGATGTACACAATCAA 59.992 43.478 0.00 0.00 0.00 2.57
2787 3577 4.191544 CACCGAGGATGTACACAATCAAT 58.808 43.478 0.00 0.00 0.00 2.57
2788 3578 4.635765 CACCGAGGATGTACACAATCAATT 59.364 41.667 0.00 0.00 0.00 2.32
2789 3579 5.815222 CACCGAGGATGTACACAATCAATTA 59.185 40.000 0.00 0.00 0.00 1.40
2790 3580 6.483307 CACCGAGGATGTACACAATCAATTAT 59.517 38.462 0.00 0.00 0.00 1.28
2791 3581 7.012327 CACCGAGGATGTACACAATCAATTATT 59.988 37.037 0.00 0.00 0.00 1.40
2792 3582 7.556275 ACCGAGGATGTACACAATCAATTATTT 59.444 33.333 0.00 0.00 0.00 1.40
2793 3583 8.405531 CCGAGGATGTACACAATCAATTATTTT 58.594 33.333 0.00 0.00 0.00 1.82
2794 3584 9.787532 CGAGGATGTACACAATCAATTATTTTT 57.212 29.630 0.00 0.00 0.00 1.94
2817 3607 7.672983 TTTTTAAATGCAACCAACAGAACAA 57.327 28.000 0.00 0.00 0.00 2.83
2818 3608 6.654793 TTTAAATGCAACCAACAGAACAAC 57.345 33.333 0.00 0.00 0.00 3.32
2819 3609 4.470334 AAATGCAACCAACAGAACAACT 57.530 36.364 0.00 0.00 0.00 3.16
2832 3622 3.483196 CAGAACAACTGCAACAAACATCG 59.517 43.478 0.00 0.00 39.86 3.84
2833 3623 3.376859 AGAACAACTGCAACAAACATCGA 59.623 39.130 0.00 0.00 0.00 3.59
2834 3624 3.065019 ACAACTGCAACAAACATCGAC 57.935 42.857 0.00 0.00 0.00 4.20
2835 3625 2.421775 ACAACTGCAACAAACATCGACA 59.578 40.909 0.00 0.00 0.00 4.35
2836 3626 3.119673 ACAACTGCAACAAACATCGACAA 60.120 39.130 0.00 0.00 0.00 3.18
2837 3627 3.773860 ACTGCAACAAACATCGACAAA 57.226 38.095 0.00 0.00 0.00 2.83
2838 3628 4.103365 ACTGCAACAAACATCGACAAAA 57.897 36.364 0.00 0.00 0.00 2.44
2839 3629 4.104776 ACTGCAACAAACATCGACAAAAG 58.895 39.130 0.00 0.00 0.00 2.27
2840 3630 4.103365 TGCAACAAACATCGACAAAAGT 57.897 36.364 0.00 0.00 0.00 2.66
2841 3631 4.101942 TGCAACAAACATCGACAAAAGTC 58.898 39.130 0.00 0.00 0.00 3.01
2842 3632 4.101942 GCAACAAACATCGACAAAAGTCA 58.898 39.130 0.00 0.00 0.00 3.41
2843 3633 4.739716 GCAACAAACATCGACAAAAGTCAT 59.260 37.500 0.00 0.00 0.00 3.06
2844 3634 5.108254 GCAACAAACATCGACAAAAGTCATC 60.108 40.000 0.00 0.00 0.00 2.92
2845 3635 5.749596 ACAAACATCGACAAAAGTCATCA 57.250 34.783 0.00 0.00 0.00 3.07
2846 3636 6.130298 ACAAACATCGACAAAAGTCATCAA 57.870 33.333 0.00 0.00 0.00 2.57
2847 3637 6.201517 ACAAACATCGACAAAAGTCATCAAG 58.798 36.000 0.00 0.00 0.00 3.02
2856 3646 5.079643 ACAAAAGTCATCAAGTAAGGGCAT 58.920 37.500 0.00 0.00 0.00 4.40
2859 3649 4.851639 AGTCATCAAGTAAGGGCATCTT 57.148 40.909 0.00 0.00 39.40 2.40
2879 3669 0.537371 CAAAGCCGACCCTCAAACCT 60.537 55.000 0.00 0.00 0.00 3.50
2886 3676 2.406002 GACCCTCAAACCTCCCGCAA 62.406 60.000 0.00 0.00 0.00 4.85
2887 3677 1.000896 CCCTCAAACCTCCCGCAAT 60.001 57.895 0.00 0.00 0.00 3.56
2888 3678 1.032114 CCCTCAAACCTCCCGCAATC 61.032 60.000 0.00 0.00 0.00 2.67
2891 3681 0.250553 TCAAACCTCCCGCAATCGTT 60.251 50.000 0.00 0.00 0.00 3.85
2899 3689 2.505337 CGCAATCGTTCGGACCGA 60.505 61.111 13.88 13.88 38.89 4.69
2900 3690 2.089936 CGCAATCGTTCGGACCGAA 61.090 57.895 25.18 25.18 43.75 4.30
2914 3704 2.356553 CGAACTTCCCGGACGCAA 60.357 61.111 0.73 0.00 0.00 4.85
2925 3715 1.226660 GGACGCAATTTGCCATCCG 60.227 57.895 18.55 7.41 41.12 4.18
2928 3718 1.240641 ACGCAATTTGCCATCCGACA 61.241 50.000 15.45 0.00 41.12 4.35
2929 3719 0.523968 CGCAATTTGCCATCCGACAG 60.524 55.000 15.45 0.00 41.12 3.51
2930 3720 0.803380 GCAATTTGCCATCCGACAGC 60.803 55.000 10.34 0.00 37.42 4.40
2932 3722 0.676466 AATTTGCCATCCGACAGCGA 60.676 50.000 0.00 0.00 40.82 4.93
2933 3723 0.464373 ATTTGCCATCCGACAGCGAT 60.464 50.000 0.00 0.00 40.82 4.58
2975 3765 1.884004 CACACGTCCGTTTTCCCGT 60.884 57.895 0.00 0.00 0.00 5.28
2992 3782 2.589338 CGTAAACCGGAAGCAAACTC 57.411 50.000 9.46 0.00 0.00 3.01
2997 3787 2.032071 CGGAAGCAAACTCGGGGT 59.968 61.111 0.00 0.00 0.00 4.95
2998 3788 1.599797 CGGAAGCAAACTCGGGGTT 60.600 57.895 0.00 0.00 40.28 4.11
3035 3825 2.553172 GACACCAGTCACGTAAGACTCT 59.447 50.000 5.62 0.00 45.35 3.24
3044 3834 0.531200 CGTAAGACTCTGACACCCCC 59.469 60.000 0.00 0.00 43.02 5.40
3060 3863 2.115266 CCAGCCACCGAAAACCCT 59.885 61.111 0.00 0.00 0.00 4.34
3061 3864 2.268076 CCAGCCACCGAAAACCCTG 61.268 63.158 0.00 0.00 0.00 4.45
3063 3866 2.909965 GCCACCGAAAACCCTGCA 60.910 61.111 0.00 0.00 0.00 4.41
3066 3869 3.284449 ACCGAAAACCCTGCACGC 61.284 61.111 0.00 0.00 0.00 5.34
3097 3901 5.660460 GTCTCCATCTTTCTCTCTTTCTCC 58.340 45.833 0.00 0.00 0.00 3.71
3115 3919 3.880490 TCTCCTCATACGCTTTCTCTCTC 59.120 47.826 0.00 0.00 0.00 3.20
3120 3924 1.718396 TACGCTTTCTCTCTCGTCGA 58.282 50.000 0.00 0.00 36.50 4.20
3169 3982 0.320374 CCAACCCGCTGTCAGAACTA 59.680 55.000 3.32 0.00 0.00 2.24
3171 3984 1.045407 AACCCGCTGTCAGAACTACA 58.955 50.000 3.32 0.00 0.00 2.74
3178 3991 3.516615 GCTGTCAGAACTACATGACCTC 58.483 50.000 3.32 0.00 44.19 3.85
3180 3993 3.506398 TGTCAGAACTACATGACCTCCA 58.494 45.455 0.00 0.00 44.19 3.86
3181 3994 3.258372 TGTCAGAACTACATGACCTCCAC 59.742 47.826 0.00 0.00 44.19 4.02
3182 3995 3.258372 GTCAGAACTACATGACCTCCACA 59.742 47.826 0.00 0.00 39.94 4.17
3184 3997 3.997021 CAGAACTACATGACCTCCACAAC 59.003 47.826 0.00 0.00 0.00 3.32
3188 4001 0.321671 ACATGACCTCCACAACCTCG 59.678 55.000 0.00 0.00 0.00 4.63
3201 4014 2.151049 AACCTCGACCGCTACACCAC 62.151 60.000 0.00 0.00 0.00 4.16
3204 4017 2.137425 CTCGACCGCTACACCACACA 62.137 60.000 0.00 0.00 0.00 3.72
3215 4029 2.202395 ACCACACAACCATGCTGCC 61.202 57.895 0.00 0.00 0.00 4.85
3219 4033 1.287815 CACAACCATGCTGCCTGTG 59.712 57.895 4.26 3.50 0.00 3.66
3223 4037 2.360726 CCATGCTGCCTGTGCTCA 60.361 61.111 4.26 0.00 38.71 4.26
3289 4103 2.414994 TCCACCTCTACGGTAGTCAG 57.585 55.000 14.45 6.06 46.94 3.51
3302 4116 2.089887 TAGTCAGCACGTCCGGCAAA 62.090 55.000 0.00 0.00 0.00 3.68
3303 4117 2.970324 TCAGCACGTCCGGCAAAC 60.970 61.111 0.00 0.00 0.00 2.93
3327 4141 3.889196 TGGTGAAATGTTCGTGCTAAC 57.111 42.857 0.00 0.00 0.00 2.34
3361 4178 6.497954 TCCCTTCTTTGAAACAATGGATTCAT 59.502 34.615 4.92 0.00 35.97 2.57
3364 4181 7.761249 CCTTCTTTGAAACAATGGATTCATACC 59.239 37.037 4.92 0.00 35.97 2.73
3393 4210 7.361127 AGTACATATACGAGCACTACATTGAC 58.639 38.462 0.00 0.00 36.33 3.18
3398 4215 3.775202 ACGAGCACTACATTGACTCATC 58.225 45.455 0.00 0.00 0.00 2.92
3399 4216 3.445450 ACGAGCACTACATTGACTCATCT 59.555 43.478 0.00 0.00 0.00 2.90
3402 4219 4.753233 AGCACTACATTGACTCATCTGAC 58.247 43.478 0.00 0.00 0.00 3.51
3419 4260 1.012841 GACGAGGAGTACTACACGGG 58.987 60.000 25.65 6.54 0.00 5.28
3423 4264 2.440409 GAGGAGTACTACACGGGTGAA 58.560 52.381 8.10 0.00 0.00 3.18
3429 4270 1.005394 CTACACGGGTGAAACGGCT 60.005 57.895 0.00 0.00 38.12 5.52
3448 4303 0.108662 TATGTGCAGACGTGGAGCAG 60.109 55.000 0.00 0.00 39.21 4.24
3464 4319 2.559785 CAGGCGGAAGAGCATGTTT 58.440 52.632 0.00 0.00 43.07 2.83
3474 4329 5.344128 CGGAAGAGCATGTTTTCAATTTCAG 59.656 40.000 0.00 0.00 0.00 3.02
3497 4352 3.134458 GGATCAATCAAGGGTCATCGAC 58.866 50.000 0.00 0.00 0.00 4.20
3533 4390 2.034066 CACGGGGCCACTTGATGT 59.966 61.111 5.30 0.00 0.00 3.06
3550 4407 4.494484 TGATGTTGATGGACGACTACTTG 58.506 43.478 0.00 0.00 34.22 3.16
3553 4411 0.172578 TGATGGACGACTACTTGCCG 59.827 55.000 0.00 0.00 0.00 5.69
3567 4425 0.395586 TTGCCGCTGATGCCCTATTT 60.396 50.000 0.00 0.00 35.36 1.40
3575 4433 2.617308 CTGATGCCCTATTTGCTGACAG 59.383 50.000 0.00 0.00 0.00 3.51
3638 4496 1.076850 TCTACCATGGCGTCCGGTA 60.077 57.895 13.04 5.43 34.12 4.02
3684 4542 4.593956 AGAAGGATGTTGTTGGAAGGATC 58.406 43.478 0.00 0.00 0.00 3.36
3695 4553 4.261801 GTTGGAAGGATCGGATTCTTTGA 58.738 43.478 12.70 0.57 0.00 2.69
3699 4557 6.841601 TGGAAGGATCGGATTCTTTGATTAT 58.158 36.000 12.70 0.00 0.00 1.28
3708 4566 7.331026 TCGGATTCTTTGATTATCAGAAGTGT 58.669 34.615 12.93 6.77 0.00 3.55
3709 4567 7.278646 TCGGATTCTTTGATTATCAGAAGTGTG 59.721 37.037 12.93 2.20 0.00 3.82
3721 4579 1.795170 GAAGTGTGTGGCCGCATTGT 61.795 55.000 24.28 8.39 32.83 2.71
3727 4585 2.035469 TGGCCGCATTGTGGATGT 59.965 55.556 20.37 0.00 38.07 3.06
3759 4617 0.405198 TGGCCGCATATTCATGGGAT 59.595 50.000 0.00 0.00 45.53 3.85
3794 4652 0.741326 TCTGAGAGCACATACGGAGC 59.259 55.000 0.00 0.00 0.00 4.70
3795 4653 0.457443 CTGAGAGCACATACGGAGCA 59.543 55.000 0.00 0.00 0.00 4.26
3796 4654 0.894835 TGAGAGCACATACGGAGCAA 59.105 50.000 0.00 0.00 0.00 3.91
3797 4655 1.281899 GAGAGCACATACGGAGCAAC 58.718 55.000 0.00 0.00 0.00 4.17
3798 4656 0.108138 AGAGCACATACGGAGCAACC 60.108 55.000 0.00 0.00 0.00 3.77
3799 4657 0.391130 GAGCACATACGGAGCAACCA 60.391 55.000 1.20 0.00 38.90 3.67
3800 4658 0.253044 AGCACATACGGAGCAACCAT 59.747 50.000 1.20 0.00 38.90 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.002257 TGCCTACCCAGCACATGTG 60.002 57.895 21.83 21.83 34.69 3.21
11 12 1.200760 TCTGCCTACCCAGCACATGT 61.201 55.000 0.00 0.00 36.01 3.21
12 13 0.745845 GTCTGCCTACCCAGCACATG 60.746 60.000 0.00 0.00 36.01 3.21
13 14 1.604378 GTCTGCCTACCCAGCACAT 59.396 57.895 0.00 0.00 36.01 3.21
14 15 2.942796 CGTCTGCCTACCCAGCACA 61.943 63.158 0.00 0.00 36.01 4.57
15 16 2.125512 CGTCTGCCTACCCAGCAC 60.126 66.667 0.00 0.00 36.01 4.40
16 17 2.603473 ACGTCTGCCTACCCAGCA 60.603 61.111 0.00 0.00 38.82 4.41
17 18 2.184579 GACGTCTGCCTACCCAGC 59.815 66.667 8.70 0.00 32.87 4.85
18 19 1.513158 CAGACGTCTGCCTACCCAG 59.487 63.158 31.00 5.99 37.15 4.45
19 20 1.982395 CCAGACGTCTGCCTACCCA 60.982 63.158 35.09 0.00 42.47 4.51
20 21 1.946475 GACCAGACGTCTGCCTACCC 61.946 65.000 35.09 17.37 42.47 3.69
21 22 1.511768 GACCAGACGTCTGCCTACC 59.488 63.158 35.09 18.89 42.47 3.18
29 30 0.244994 ATGTCAGCAGACCAGACGTC 59.755 55.000 7.70 7.70 44.33 4.34
30 31 0.037882 CATGTCAGCAGACCAGACGT 60.038 55.000 6.80 0.00 44.33 4.34
31 32 0.244721 TCATGTCAGCAGACCAGACG 59.755 55.000 6.80 0.00 44.33 4.18
32 33 2.462456 TTCATGTCAGCAGACCAGAC 57.538 50.000 6.80 0.00 44.33 3.51
33 34 2.938314 GCATTCATGTCAGCAGACCAGA 60.938 50.000 6.80 1.89 44.33 3.86
34 35 1.400846 GCATTCATGTCAGCAGACCAG 59.599 52.381 6.80 0.00 44.33 4.00
35 36 1.271488 TGCATTCATGTCAGCAGACCA 60.271 47.619 6.80 0.00 44.33 4.02
36 37 1.456296 TGCATTCATGTCAGCAGACC 58.544 50.000 6.80 0.00 44.33 3.85
37 38 3.066369 CATGCATTCATGTCAGCAGAC 57.934 47.619 0.00 1.64 43.85 3.51
47 48 3.382546 GGCAACTTCCTACATGCATTCAT 59.617 43.478 0.00 0.00 40.51 2.57
48 49 2.754552 GGCAACTTCCTACATGCATTCA 59.245 45.455 0.00 0.00 40.51 2.57
49 50 2.099756 GGGCAACTTCCTACATGCATTC 59.900 50.000 0.00 0.00 40.51 2.67
50 51 2.102578 GGGCAACTTCCTACATGCATT 58.897 47.619 0.00 0.00 40.51 3.56
51 52 1.285962 AGGGCAACTTCCTACATGCAT 59.714 47.619 0.00 0.00 40.51 3.96
52 53 0.698238 AGGGCAACTTCCTACATGCA 59.302 50.000 0.00 0.00 40.51 3.96
53 54 1.098050 CAGGGCAACTTCCTACATGC 58.902 55.000 0.00 0.00 38.06 4.06
54 55 2.359900 GACAGGGCAACTTCCTACATG 58.640 52.381 0.00 0.00 32.49 3.21
55 56 1.282157 GGACAGGGCAACTTCCTACAT 59.718 52.381 0.00 0.00 32.49 2.29
56 57 0.690762 GGACAGGGCAACTTCCTACA 59.309 55.000 0.00 0.00 32.49 2.74
57 58 0.391263 CGGACAGGGCAACTTCCTAC 60.391 60.000 0.00 0.00 32.49 3.18
58 59 1.550130 CCGGACAGGGCAACTTCCTA 61.550 60.000 0.00 0.00 35.97 2.94
59 60 2.750350 CGGACAGGGCAACTTCCT 59.250 61.111 0.00 0.00 34.39 3.36
60 61 2.359975 CCGGACAGGGCAACTTCC 60.360 66.667 0.00 0.00 35.97 3.46
61 62 2.430367 ACCGGACAGGGCAACTTC 59.570 61.111 9.46 0.00 46.96 3.01
68 69 4.065281 GGACGTGACCGGACAGGG 62.065 72.222 25.88 15.37 46.96 4.45
78 79 0.806884 GTTGGTCACAACGGACGTGA 60.807 55.000 0.00 0.32 46.50 4.35
79 80 1.639534 GTTGGTCACAACGGACGTG 59.360 57.895 0.00 0.00 46.50 4.49
80 81 4.113681 GTTGGTCACAACGGACGT 57.886 55.556 0.00 0.00 46.50 4.34
87 88 1.133823 ACTGCATCCTGTTGGTCACAA 60.134 47.619 0.00 0.00 33.87 3.33
88 89 0.473755 ACTGCATCCTGTTGGTCACA 59.526 50.000 0.00 0.00 34.23 3.58
89 90 0.877071 CACTGCATCCTGTTGGTCAC 59.123 55.000 0.00 0.00 34.23 3.67
90 91 0.890542 GCACTGCATCCTGTTGGTCA 60.891 55.000 0.00 0.00 34.23 4.02
91 92 1.878775 GCACTGCATCCTGTTGGTC 59.121 57.895 0.00 0.00 34.23 4.02
92 93 1.968017 CGCACTGCATCCTGTTGGT 60.968 57.895 1.11 0.00 34.23 3.67
93 94 2.693762 CCGCACTGCATCCTGTTGG 61.694 63.158 1.11 0.00 0.00 3.77
94 95 1.236616 TTCCGCACTGCATCCTGTTG 61.237 55.000 1.11 0.00 0.00 3.33
95 96 0.537143 TTTCCGCACTGCATCCTGTT 60.537 50.000 1.11 0.00 0.00 3.16
96 97 0.957395 CTTTCCGCACTGCATCCTGT 60.957 55.000 1.11 0.00 0.00 4.00
97 98 1.798735 CTTTCCGCACTGCATCCTG 59.201 57.895 1.11 0.00 0.00 3.86
98 99 2.042831 GCTTTCCGCACTGCATCCT 61.043 57.895 1.11 0.00 38.92 3.24
99 100 2.486966 GCTTTCCGCACTGCATCC 59.513 61.111 1.11 0.00 38.92 3.51
100 101 2.099062 CGCTTTCCGCACTGCATC 59.901 61.111 1.11 0.00 39.08 3.91
101 102 3.434319 CCGCTTTCCGCACTGCAT 61.434 61.111 1.11 0.00 39.08 3.96
104 105 3.726517 CACCCGCTTTCCGCACTG 61.727 66.667 0.00 0.00 39.08 3.66
119 120 4.838486 CTCTCTCGCCGCGTCCAC 62.838 72.222 13.39 0.00 0.00 4.02
122 123 4.838486 CACCTCTCTCGCCGCGTC 62.838 72.222 13.39 0.00 0.00 5.19
125 126 3.591254 AAACCACCTCTCTCGCCGC 62.591 63.158 0.00 0.00 0.00 6.53
126 127 1.004918 AAAACCACCTCTCTCGCCG 60.005 57.895 0.00 0.00 0.00 6.46
127 128 0.955919 CCAAAACCACCTCTCTCGCC 60.956 60.000 0.00 0.00 0.00 5.54
128 129 0.955919 CCCAAAACCACCTCTCTCGC 60.956 60.000 0.00 0.00 0.00 5.03
129 130 0.396811 ACCCAAAACCACCTCTCTCG 59.603 55.000 0.00 0.00 0.00 4.04
130 131 2.186532 GACCCAAAACCACCTCTCTC 57.813 55.000 0.00 0.00 0.00 3.20
476 477 3.827722 AGTCCGGAAGTCCAAAATTTCA 58.172 40.909 5.23 0.00 35.14 2.69
477 478 4.037565 ACAAGTCCGGAAGTCCAAAATTTC 59.962 41.667 5.23 0.00 35.14 2.17
478 479 3.958147 ACAAGTCCGGAAGTCCAAAATTT 59.042 39.130 5.23 0.00 35.14 1.82
479 480 3.562182 ACAAGTCCGGAAGTCCAAAATT 58.438 40.909 5.23 0.00 35.14 1.82
480 481 3.223674 ACAAGTCCGGAAGTCCAAAAT 57.776 42.857 5.23 0.00 35.14 1.82
481 482 2.721425 ACAAGTCCGGAAGTCCAAAA 57.279 45.000 5.23 0.00 35.14 2.44
482 483 2.685897 CAAACAAGTCCGGAAGTCCAAA 59.314 45.455 5.23 0.00 35.14 3.28
497 498 4.036971 CGGTCACCTAATTTGTCCAAACAA 59.963 41.667 0.00 0.00 43.58 2.83
506 507 1.135803 CAACGGCGGTCACCTAATTTG 60.136 52.381 13.24 0.00 0.00 2.32
512 513 3.319198 ATCCAACGGCGGTCACCT 61.319 61.111 13.24 0.00 0.00 4.00
539 540 4.841443 TCTAAACTGTACAGAGCGAACA 57.159 40.909 29.30 3.98 0.00 3.18
540 541 5.162075 ACATCTAAACTGTACAGAGCGAAC 58.838 41.667 29.30 0.00 0.00 3.95
541 542 5.386958 ACATCTAAACTGTACAGAGCGAA 57.613 39.130 29.30 11.52 0.00 4.70
543 544 6.253727 CCTAAACATCTAAACTGTACAGAGCG 59.746 42.308 29.30 13.54 0.00 5.03
544 545 6.535508 CCCTAAACATCTAAACTGTACAGAGC 59.464 42.308 29.30 0.00 0.00 4.09
545 546 7.042335 CCCCTAAACATCTAAACTGTACAGAG 58.958 42.308 29.30 15.96 0.00 3.35
546 547 6.575649 GCCCCTAAACATCTAAACTGTACAGA 60.576 42.308 29.30 7.06 0.00 3.41
547 548 5.585047 GCCCCTAAACATCTAAACTGTACAG 59.415 44.000 21.44 21.44 0.00 2.74
553 555 4.772886 ATCGCCCCTAAACATCTAAACT 57.227 40.909 0.00 0.00 0.00 2.66
561 563 1.074084 TCACCAAATCGCCCCTAAACA 59.926 47.619 0.00 0.00 0.00 2.83
562 564 1.828979 TCACCAAATCGCCCCTAAAC 58.171 50.000 0.00 0.00 0.00 2.01
571 573 0.179192 CCACACGCATCACCAAATCG 60.179 55.000 0.00 0.00 0.00 3.34
583 585 1.369091 CTATGGCAACTCCCACACGC 61.369 60.000 0.00 0.00 37.79 5.34
589 591 1.282157 ACAACCTCTATGGCAACTCCC 59.718 52.381 0.00 0.00 40.22 4.30
599 601 7.466746 AATTGCACAAATACACAACCTCTAT 57.533 32.000 0.00 0.00 0.00 1.98
630 632 9.140286 GCAAATCCTGTAGAAAAATAAAAGGTC 57.860 33.333 0.00 0.00 0.00 3.85
653 657 4.314522 TTGGATAAATGGAGGACTGCAA 57.685 40.909 0.00 0.00 33.77 4.08
704 708 1.134226 CGTGTGGGTGTAACTCGTTC 58.866 55.000 0.00 0.00 43.75 3.95
882 1226 0.179089 CTTCAGGATCCTGTCGCTGG 60.179 60.000 35.34 18.43 43.96 4.85
890 1234 0.253347 TTCCAGCCCTTCAGGATCCT 60.253 55.000 9.02 9.02 38.24 3.24
898 1242 0.806492 GATCGTCGTTCCAGCCCTTC 60.806 60.000 0.00 0.00 0.00 3.46
977 1321 3.717294 GGGGCTGGCTTCTCGGAA 61.717 66.667 0.00 0.00 0.00 4.30
987 1331 2.106332 CTAACGTAGCGGGGCTGG 59.894 66.667 0.00 0.00 40.10 4.85
1013 1357 0.377203 CAAGGCTTTAATCCGCGTCC 59.623 55.000 4.92 0.00 0.00 4.79
1014 1358 1.084289 ACAAGGCTTTAATCCGCGTC 58.916 50.000 4.92 0.00 0.00 5.19
1015 1359 1.199097 CAACAAGGCTTTAATCCGCGT 59.801 47.619 4.92 0.00 0.00 6.01
1016 1360 1.467374 CCAACAAGGCTTTAATCCGCG 60.467 52.381 0.00 0.00 0.00 6.46
1018 1362 3.081804 ACTCCAACAAGGCTTTAATCCG 58.918 45.455 0.00 0.00 37.29 4.18
1020 1364 4.237724 GCAACTCCAACAAGGCTTTAATC 58.762 43.478 0.00 0.00 37.29 1.75
1021 1365 3.006859 GGCAACTCCAACAAGGCTTTAAT 59.993 43.478 0.00 0.00 37.29 1.40
1022 1366 2.364002 GGCAACTCCAACAAGGCTTTAA 59.636 45.455 0.00 0.00 37.29 1.52
1023 1367 1.960689 GGCAACTCCAACAAGGCTTTA 59.039 47.619 0.00 0.00 37.29 1.85
1024 1368 0.752658 GGCAACTCCAACAAGGCTTT 59.247 50.000 0.00 0.00 37.29 3.51
1025 1369 0.396974 TGGCAACTCCAACAAGGCTT 60.397 50.000 0.00 0.00 43.21 4.35
1026 1370 1.229927 TGGCAACTCCAACAAGGCT 59.770 52.632 0.00 0.00 43.21 4.58
1027 1371 3.854856 TGGCAACTCCAACAAGGC 58.145 55.556 0.00 0.00 43.21 4.35
1035 1379 1.959085 CACACACCATGGCAACTCC 59.041 57.895 13.04 0.00 37.61 3.85
1036 1380 1.286880 GCACACACCATGGCAACTC 59.713 57.895 13.04 0.00 37.61 3.01
1037 1381 2.202395 GGCACACACCATGGCAACT 61.202 57.895 13.04 0.00 42.03 3.16
1038 1382 2.339712 GGCACACACCATGGCAAC 59.660 61.111 13.04 0.00 42.03 4.17
1041 1385 3.376078 CCTGGCACACACCATGGC 61.376 66.667 13.04 0.00 39.54 4.40
1042 1386 3.376078 GCCTGGCACACACCATGG 61.376 66.667 15.17 11.19 39.54 3.66
1043 1387 1.904865 AAGCCTGGCACACACCATG 60.905 57.895 22.65 0.00 39.54 3.66
1046 1390 2.203337 TCAAGCCTGGCACACACC 60.203 61.111 22.65 0.00 0.00 4.16
1050 1394 1.071987 CTGACTCAAGCCTGGCACA 59.928 57.895 22.65 9.51 0.00 4.57
1051 1395 0.035630 ATCTGACTCAAGCCTGGCAC 60.036 55.000 22.65 5.38 0.00 5.01
1052 1396 1.208052 GTATCTGACTCAAGCCTGGCA 59.792 52.381 22.65 0.00 0.00 4.92
1055 1399 3.529533 CTTGGTATCTGACTCAAGCCTG 58.470 50.000 0.00 0.00 32.87 4.85
1061 1405 2.762887 CAGGAGCTTGGTATCTGACTCA 59.237 50.000 0.00 0.00 0.00 3.41
1082 1426 0.029167 GTACGTCCCGAAGCTAGAGC 59.971 60.000 0.00 0.00 42.49 4.09
1094 1438 2.510691 CACGGCCATGGTACGTCC 60.511 66.667 26.53 13.24 39.02 4.79
1138 1489 2.352032 GCCGTACTGCCTCTGGTCT 61.352 63.158 0.00 0.00 0.00 3.85
1314 1666 2.813908 CAGTAGTTGCCGACGCCC 60.814 66.667 0.00 0.00 0.00 6.13
1407 1759 3.220999 CTCCGTGAACCAGGACGCA 62.221 63.158 0.00 0.00 34.18 5.24
1413 1765 1.374758 GTGCCTCTCCGTGAACCAG 60.375 63.158 0.00 0.00 0.00 4.00
1596 2214 6.987992 CAGTATATTTTTCCACGTAGCCCTTA 59.012 38.462 0.00 0.00 0.00 2.69
1598 2216 5.129815 TCAGTATATTTTTCCACGTAGCCCT 59.870 40.000 0.00 0.00 0.00 5.19
1600 2218 5.051240 CGTCAGTATATTTTTCCACGTAGCC 60.051 44.000 0.00 0.00 0.00 3.93
1601 2219 5.745294 TCGTCAGTATATTTTTCCACGTAGC 59.255 40.000 0.00 0.00 0.00 3.58
1646 2436 0.103208 CCATCTCCGACAGGTACAGC 59.897 60.000 0.00 0.00 39.05 4.40
1827 2617 2.956964 GAAGATGGCGCCGACGAG 60.957 66.667 23.90 0.00 43.93 4.18
1856 2646 1.889530 GCTGGACGAGGCTGTTAGGT 61.890 60.000 0.00 0.00 0.00 3.08
1859 2649 1.591703 CTGCTGGACGAGGCTGTTA 59.408 57.895 0.00 0.00 0.00 2.41
2049 2839 1.681793 CGTGAAGGACGGTATGAGGAT 59.318 52.381 0.00 0.00 44.85 3.24
2192 2982 2.125512 AGGAGCATGGACGCGAAC 60.126 61.111 15.93 5.30 36.85 3.95
2234 3024 3.082579 GCCGCCGAGGATGAGAAGT 62.083 63.158 0.91 0.00 45.00 3.01
2422 3212 1.306141 ACCTCCAGCGGGAAGATCA 60.306 57.895 8.63 0.00 44.38 2.92
2541 3331 1.438651 CCGGCGATGAAGAAGAACAA 58.561 50.000 9.30 0.00 0.00 2.83
2553 3343 3.550431 CAGGATCCACCCGGCGAT 61.550 66.667 15.82 0.00 40.05 4.58
2693 3483 2.930455 GCTTCAGAGCTTCTCACTGTCC 60.930 54.545 0.00 0.00 45.65 4.02
2732 3522 4.614946 CTCTCAGATCGTGTTGATGCATA 58.385 43.478 0.00 0.00 37.47 3.14
2733 3523 3.455327 CTCTCAGATCGTGTTGATGCAT 58.545 45.455 0.00 0.00 37.47 3.96
2734 3524 2.884827 CTCTCAGATCGTGTTGATGCA 58.115 47.619 0.00 0.00 37.47 3.96
2735 3525 1.592081 GCTCTCAGATCGTGTTGATGC 59.408 52.381 0.00 0.00 37.47 3.91
2736 3526 3.162202 AGCTCTCAGATCGTGTTGATG 57.838 47.619 0.00 0.00 37.47 3.07
2737 3527 3.951037 AGTAGCTCTCAGATCGTGTTGAT 59.049 43.478 0.00 0.00 41.06 2.57
2738 3528 3.348119 AGTAGCTCTCAGATCGTGTTGA 58.652 45.455 0.00 0.00 0.00 3.18
2739 3529 3.127721 TGAGTAGCTCTCAGATCGTGTTG 59.872 47.826 10.62 0.00 46.77 3.33
2740 3530 3.348119 TGAGTAGCTCTCAGATCGTGTT 58.652 45.455 10.62 0.00 46.77 3.32
2741 3531 2.992593 TGAGTAGCTCTCAGATCGTGT 58.007 47.619 10.62 0.00 46.77 4.49
2750 3540 2.085320 TCGGTGTCTTGAGTAGCTCTC 58.915 52.381 0.00 0.00 43.03 3.20
2751 3541 2.088423 CTCGGTGTCTTGAGTAGCTCT 58.912 52.381 0.00 0.00 0.00 4.09
2752 3542 1.133407 CCTCGGTGTCTTGAGTAGCTC 59.867 57.143 0.00 0.00 0.00 4.09
2753 3543 1.178276 CCTCGGTGTCTTGAGTAGCT 58.822 55.000 0.00 0.00 0.00 3.32
2754 3544 1.174783 TCCTCGGTGTCTTGAGTAGC 58.825 55.000 0.00 0.00 0.00 3.58
2755 3545 2.755655 ACATCCTCGGTGTCTTGAGTAG 59.244 50.000 0.00 0.00 0.00 2.57
2756 3546 2.803956 ACATCCTCGGTGTCTTGAGTA 58.196 47.619 0.00 0.00 0.00 2.59
2757 3547 1.633774 ACATCCTCGGTGTCTTGAGT 58.366 50.000 0.00 0.00 0.00 3.41
2758 3548 2.492088 TGTACATCCTCGGTGTCTTGAG 59.508 50.000 0.00 0.00 0.00 3.02
2759 3549 2.230508 GTGTACATCCTCGGTGTCTTGA 59.769 50.000 0.00 0.00 0.00 3.02
2760 3550 2.029380 TGTGTACATCCTCGGTGTCTTG 60.029 50.000 0.00 0.00 0.00 3.02
2761 3551 2.244695 TGTGTACATCCTCGGTGTCTT 58.755 47.619 0.00 0.00 0.00 3.01
2762 3552 1.919240 TGTGTACATCCTCGGTGTCT 58.081 50.000 0.00 0.00 0.00 3.41
2763 3553 2.736144 TTGTGTACATCCTCGGTGTC 57.264 50.000 0.00 0.00 0.00 3.67
2764 3554 2.565391 TGATTGTGTACATCCTCGGTGT 59.435 45.455 0.00 0.00 0.00 4.16
2765 3555 3.245518 TGATTGTGTACATCCTCGGTG 57.754 47.619 0.00 0.00 0.00 4.94
2766 3556 3.973206 TTGATTGTGTACATCCTCGGT 57.027 42.857 0.00 0.00 0.00 4.69
2767 3557 7.496529 AATAATTGATTGTGTACATCCTCGG 57.503 36.000 0.00 0.00 0.00 4.63
2768 3558 9.787532 AAAAATAATTGATTGTGTACATCCTCG 57.212 29.630 0.00 0.00 0.00 4.63
2793 3583 7.389053 AGTTGTTCTGTTGGTTGCATTTAAAAA 59.611 29.630 0.00 0.00 0.00 1.94
2794 3584 6.876257 AGTTGTTCTGTTGGTTGCATTTAAAA 59.124 30.769 0.00 0.00 0.00 1.52
2795 3585 6.312426 CAGTTGTTCTGTTGGTTGCATTTAAA 59.688 34.615 0.00 0.00 39.17 1.52
2796 3586 5.809562 CAGTTGTTCTGTTGGTTGCATTTAA 59.190 36.000 0.00 0.00 39.17 1.52
2797 3587 5.347342 CAGTTGTTCTGTTGGTTGCATTTA 58.653 37.500 0.00 0.00 39.17 1.40
2798 3588 4.183101 CAGTTGTTCTGTTGGTTGCATTT 58.817 39.130 0.00 0.00 39.17 2.32
2799 3589 3.784338 CAGTTGTTCTGTTGGTTGCATT 58.216 40.909 0.00 0.00 39.17 3.56
2800 3590 2.481795 GCAGTTGTTCTGTTGGTTGCAT 60.482 45.455 0.00 0.00 45.23 3.96
2801 3591 1.135141 GCAGTTGTTCTGTTGGTTGCA 60.135 47.619 0.00 0.00 45.23 4.08
2802 3592 1.135141 TGCAGTTGTTCTGTTGGTTGC 60.135 47.619 0.00 0.00 45.23 4.17
2803 3593 2.923020 GTTGCAGTTGTTCTGTTGGTTG 59.077 45.455 0.00 0.00 45.23 3.77
2804 3594 2.560542 TGTTGCAGTTGTTCTGTTGGTT 59.439 40.909 0.00 0.00 45.23 3.67
2805 3595 2.166829 TGTTGCAGTTGTTCTGTTGGT 58.833 42.857 0.00 0.00 45.23 3.67
2806 3596 2.937469 TGTTGCAGTTGTTCTGTTGG 57.063 45.000 0.00 0.00 45.23 3.77
2807 3597 3.986572 TGTTTGTTGCAGTTGTTCTGTTG 59.013 39.130 0.00 0.00 45.23 3.33
2808 3598 4.250116 TGTTTGTTGCAGTTGTTCTGTT 57.750 36.364 0.00 0.00 45.23 3.16
2809 3599 3.932545 TGTTTGTTGCAGTTGTTCTGT 57.067 38.095 0.00 0.00 45.23 3.41
2810 3600 3.483196 CGATGTTTGTTGCAGTTGTTCTG 59.517 43.478 0.00 0.00 46.12 3.02
2811 3601 3.376859 TCGATGTTTGTTGCAGTTGTTCT 59.623 39.130 0.00 0.00 0.00 3.01
2812 3602 3.482110 GTCGATGTTTGTTGCAGTTGTTC 59.518 43.478 0.00 0.00 0.00 3.18
2813 3603 3.119673 TGTCGATGTTTGTTGCAGTTGTT 60.120 39.130 0.00 0.00 0.00 2.83
2814 3604 2.421775 TGTCGATGTTTGTTGCAGTTGT 59.578 40.909 0.00 0.00 0.00 3.32
2815 3605 3.063670 TGTCGATGTTTGTTGCAGTTG 57.936 42.857 0.00 0.00 0.00 3.16
2816 3606 3.773860 TTGTCGATGTTTGTTGCAGTT 57.226 38.095 0.00 0.00 0.00 3.16
2817 3607 3.773860 TTTGTCGATGTTTGTTGCAGT 57.226 38.095 0.00 0.00 0.00 4.40
2818 3608 4.104776 ACTTTTGTCGATGTTTGTTGCAG 58.895 39.130 0.00 0.00 0.00 4.41
2819 3609 4.101942 GACTTTTGTCGATGTTTGTTGCA 58.898 39.130 0.00 0.00 39.89 4.08
2820 3610 4.676061 GACTTTTGTCGATGTTTGTTGC 57.324 40.909 0.00 0.00 39.89 4.17
2833 3623 4.469657 TGCCCTTACTTGATGACTTTTGT 58.530 39.130 0.00 0.00 0.00 2.83
2834 3624 5.416952 AGATGCCCTTACTTGATGACTTTTG 59.583 40.000 0.00 0.00 0.00 2.44
2835 3625 5.574188 AGATGCCCTTACTTGATGACTTTT 58.426 37.500 0.00 0.00 0.00 2.27
2836 3626 5.184892 AGATGCCCTTACTTGATGACTTT 57.815 39.130 0.00 0.00 0.00 2.66
2837 3627 4.851639 AGATGCCCTTACTTGATGACTT 57.148 40.909 0.00 0.00 0.00 3.01
2838 3628 4.225942 TGAAGATGCCCTTACTTGATGACT 59.774 41.667 0.00 0.00 34.68 3.41
2839 3629 4.517285 TGAAGATGCCCTTACTTGATGAC 58.483 43.478 0.00 0.00 34.68 3.06
2840 3630 4.842531 TGAAGATGCCCTTACTTGATGA 57.157 40.909 0.00 0.00 34.68 2.92
2841 3631 5.678107 GCTTTGAAGATGCCCTTACTTGATG 60.678 44.000 0.00 0.00 34.68 3.07
2842 3632 4.400567 GCTTTGAAGATGCCCTTACTTGAT 59.599 41.667 0.00 0.00 34.68 2.57
2843 3633 3.758554 GCTTTGAAGATGCCCTTACTTGA 59.241 43.478 0.00 0.00 34.68 3.02
2844 3634 3.119352 GGCTTTGAAGATGCCCTTACTTG 60.119 47.826 0.00 0.00 41.53 3.16
2845 3635 3.092301 GGCTTTGAAGATGCCCTTACTT 58.908 45.455 0.00 0.00 41.53 2.24
2846 3636 2.728007 GGCTTTGAAGATGCCCTTACT 58.272 47.619 0.00 0.00 41.53 2.24
2847 3637 1.401905 CGGCTTTGAAGATGCCCTTAC 59.598 52.381 0.00 0.00 43.80 2.34
2856 3646 0.762418 TTGAGGGTCGGCTTTGAAGA 59.238 50.000 0.00 0.00 0.00 2.87
2859 3649 0.536460 GGTTTGAGGGTCGGCTTTGA 60.536 55.000 0.00 0.00 0.00 2.69
2866 3656 2.264794 CGGGAGGTTTGAGGGTCG 59.735 66.667 0.00 0.00 0.00 4.79
2891 3681 3.376078 CCGGGAAGTTCGGTCCGA 61.376 66.667 10.71 10.71 44.69 4.55
2899 3689 0.596082 CAAATTGCGTCCGGGAAGTT 59.404 50.000 11.61 0.00 34.49 2.66
2900 3690 1.862602 GCAAATTGCGTCCGGGAAGT 61.863 55.000 11.61 0.00 31.71 3.01
2902 3692 2.631580 GGCAAATTGCGTCCGGGAA 61.632 57.895 12.15 0.00 46.21 3.97
2903 3693 3.059386 GGCAAATTGCGTCCGGGA 61.059 61.111 12.15 0.00 46.21 5.14
2904 3694 2.612219 GATGGCAAATTGCGTCCGGG 62.612 60.000 12.15 0.00 46.21 5.73
2911 3701 0.803380 GCTGTCGGATGGCAAATTGC 60.803 55.000 9.87 9.87 44.08 3.56
2912 3702 0.523968 CGCTGTCGGATGGCAAATTG 60.524 55.000 0.00 0.00 0.00 2.32
2913 3703 0.676466 TCGCTGTCGGATGGCAAATT 60.676 50.000 0.00 0.00 36.13 1.82
2914 3704 0.464373 ATCGCTGTCGGATGGCAAAT 60.464 50.000 0.00 0.00 36.13 2.32
2948 3738 4.736896 GGACGTGTGGACCGCTCC 62.737 72.222 6.60 1.16 37.04 4.70
2954 3744 1.501337 GGGAAAACGGACGTGTGGAC 61.501 60.000 0.00 0.00 0.00 4.02
2956 3746 2.600475 CGGGAAAACGGACGTGTGG 61.600 63.158 0.00 0.00 0.00 4.17
2959 3749 1.070643 GTTTACGGGAAAACGGACGTG 60.071 52.381 0.00 0.00 40.12 4.49
2975 3765 1.515081 CCGAGTTTGCTTCCGGTTTA 58.485 50.000 0.00 0.00 37.40 2.01
2998 3788 0.394488 TGTCCCGACACCTGCAAAAA 60.394 50.000 0.00 0.00 36.21 1.94
2999 3789 1.224870 TGTCCCGACACCTGCAAAA 59.775 52.632 0.00 0.00 36.21 2.44
3012 3802 0.963962 TCTTACGTGACTGGTGTCCC 59.036 55.000 0.00 0.00 42.28 4.46
3018 3808 2.552743 TGTCAGAGTCTTACGTGACTGG 59.447 50.000 12.81 5.81 46.11 4.00
3022 3812 1.884579 GGGTGTCAGAGTCTTACGTGA 59.115 52.381 0.00 0.00 0.00 4.35
3029 3819 1.915769 GCTGGGGGTGTCAGAGTCT 60.916 63.158 0.00 0.00 34.36 3.24
3044 3834 2.919494 GCAGGGTTTTCGGTGGCTG 61.919 63.158 0.00 0.00 0.00 4.85
3052 3843 2.335011 GGTGCGTGCAGGGTTTTC 59.665 61.111 8.72 0.00 0.00 2.29
3066 3869 2.521958 AAAGATGGAGACGCGGGGTG 62.522 60.000 12.47 0.00 0.00 4.61
3072 3875 3.518634 AAGAGAGAAAGATGGAGACGC 57.481 47.619 0.00 0.00 0.00 5.19
3097 3901 3.613563 GACGAGAGAGAAAGCGTATGAG 58.386 50.000 0.00 0.00 37.07 2.90
3115 3919 3.172099 TATAGCGGTGGCGTCGACG 62.172 63.158 32.57 32.57 46.35 5.12
3120 3924 2.497770 GTGGTATAGCGGTGGCGT 59.502 61.111 0.00 0.00 46.35 5.68
3157 3961 3.516615 GAGGTCATGTAGTTCTGACAGC 58.483 50.000 0.00 0.00 42.83 4.40
3160 3964 3.258372 TGTGGAGGTCATGTAGTTCTGAC 59.742 47.826 0.00 0.00 40.82 3.51
3163 3967 3.008049 GGTTGTGGAGGTCATGTAGTTCT 59.992 47.826 0.00 0.00 0.00 3.01
3169 3982 0.321671 CGAGGTTGTGGAGGTCATGT 59.678 55.000 0.00 0.00 0.00 3.21
3171 3984 0.608640 GTCGAGGTTGTGGAGGTCAT 59.391 55.000 0.00 0.00 0.00 3.06
3178 3991 1.445582 GTAGCGGTCGAGGTTGTGG 60.446 63.158 0.00 0.00 0.00 4.17
3180 3993 1.288127 GTGTAGCGGTCGAGGTTGT 59.712 57.895 0.00 0.00 0.00 3.32
3181 3994 1.445582 GGTGTAGCGGTCGAGGTTG 60.446 63.158 0.00 0.00 0.00 3.77
3182 3995 1.904865 TGGTGTAGCGGTCGAGGTT 60.905 57.895 0.00 0.00 0.00 3.50
3184 3997 2.181021 GTGGTGTAGCGGTCGAGG 59.819 66.667 0.00 0.00 0.00 4.63
3188 4001 1.226030 GGTTGTGTGGTGTAGCGGTC 61.226 60.000 0.00 0.00 0.00 4.79
3201 4014 1.287815 CACAGGCAGCATGGTTGTG 59.712 57.895 12.54 12.37 35.86 3.33
3204 4017 1.975407 GAGCACAGGCAGCATGGTT 60.975 57.895 12.54 0.00 44.61 3.67
3215 4029 4.320456 ACCGGTGGCTGAGCACAG 62.320 66.667 6.12 6.80 45.91 3.66
3251 4065 1.389609 ATGGTACCTACGTGGCGGAG 61.390 60.000 14.36 0.00 40.22 4.63
3276 4090 1.081892 GACGTGCTGACTACCGTAGA 58.918 55.000 12.66 0.00 33.03 2.59
3289 4103 1.007849 AAATGTTTGCCGGACGTGC 60.008 52.632 5.05 0.00 0.00 5.34
3361 4178 4.758674 GTGCTCGTATATGTACTCCAGGTA 59.241 45.833 0.00 0.00 0.00 3.08
3364 4181 5.469084 TGTAGTGCTCGTATATGTACTCCAG 59.531 44.000 0.00 0.00 31.91 3.86
3393 4210 4.271533 GTGTAGTACTCCTCGTCAGATGAG 59.728 50.000 12.28 12.28 42.48 2.90
3398 4215 1.664659 CCGTGTAGTACTCCTCGTCAG 59.335 57.143 0.00 0.00 0.00 3.51
3399 4216 1.676916 CCCGTGTAGTACTCCTCGTCA 60.677 57.143 0.00 0.00 0.00 4.35
3402 4219 0.731417 CACCCGTGTAGTACTCCTCG 59.269 60.000 0.00 0.00 0.00 4.63
3409 4250 0.038343 GCCGTTTCACCCGTGTAGTA 60.038 55.000 0.00 0.00 0.00 1.82
3419 4260 1.128692 GTCTGCACATAGCCGTTTCAC 59.871 52.381 0.00 0.00 44.83 3.18
3423 4264 1.014044 CACGTCTGCACATAGCCGTT 61.014 55.000 0.00 0.00 44.83 4.44
3429 4270 0.108662 CTGCTCCACGTCTGCACATA 60.109 55.000 2.98 0.00 32.91 2.29
3448 4303 0.881118 TGAAAACATGCTCTTCCGCC 59.119 50.000 0.00 0.00 0.00 6.13
3464 4319 5.422970 CCTTGATTGATCCCCTGAAATTGAA 59.577 40.000 0.00 0.00 0.00 2.69
3474 4329 2.811873 CGATGACCCTTGATTGATCCCC 60.812 54.545 0.00 0.00 0.00 4.81
3526 4383 4.748892 AGTAGTCGTCCATCAACATCAAG 58.251 43.478 0.00 0.00 0.00 3.02
3531 4388 2.611971 GGCAAGTAGTCGTCCATCAACA 60.612 50.000 0.00 0.00 0.00 3.33
3533 4390 1.403647 CGGCAAGTAGTCGTCCATCAA 60.404 52.381 0.00 0.00 41.32 2.57
3550 4407 1.656441 CAAATAGGGCATCAGCGGC 59.344 57.895 0.00 0.00 43.41 6.53
3553 4411 1.336125 GTCAGCAAATAGGGCATCAGC 59.664 52.381 0.00 0.00 41.10 4.26
3567 4425 0.179094 ACCGACGAAAACTGTCAGCA 60.179 50.000 0.00 0.00 36.11 4.41
3675 4533 4.778213 ATCAAAGAATCCGATCCTTCCA 57.222 40.909 0.00 0.00 0.00 3.53
3684 4542 7.065085 ACACACTTCTGATAATCAAAGAATCCG 59.935 37.037 0.00 0.00 29.96 4.18
3695 4553 2.632377 CGGCCACACACTTCTGATAAT 58.368 47.619 2.24 0.00 0.00 1.28
3699 4557 2.280797 GCGGCCACACACTTCTGA 60.281 61.111 2.24 0.00 0.00 3.27
3708 4566 2.035469 ATCCACAATGCGGCCACA 59.965 55.556 2.24 0.00 0.00 4.17
3709 4567 1.876497 AACATCCACAATGCGGCCAC 61.876 55.000 2.24 0.00 39.12 5.01
3742 4600 1.825090 TCATCCCATGAATATGCGGC 58.175 50.000 0.00 0.00 36.11 6.53
3759 4617 4.871822 TCTCAGACATCCAGAGGTATTCA 58.128 43.478 0.00 0.00 0.00 2.57
3768 4626 2.983907 ATGTGCTCTCAGACATCCAG 57.016 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.