>input_sequence_43281
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---------------------------------------------------------------GTTAGTCGTCAATGGAC
GCGGATTAAAGCCTTGTTGGAGTTGCCATGGTGTGTGCCAGGCTTGAGTCAGATACCAAGCTCCTGCTCTAGCTTCGGGA
CGT-------ACCATGGCCGTGGGTTTCGCTGCCGGCGGCGCTGGCGAAGACCAGAGGCAGTACGGCGGGAGGGTCACGG
CGTTCGCGGCGCTCTCCTGCATCACGGCGGCCATGGGCGGCGCCATCTTCGGCTACGACATCAGCACCGCGGGCGGG-TG
TCGTCCATGGAACCGTTCCTCAGGGACTTCTTCCCGGACGTGCACAGGCGGATGCAGGCCGGCGCGGGCGTCGGCAACTA
CTGCAAGTTCGACAGCCAGCTCCTCACGCTCTTCACCTCCTCGCTCTACGTCTCGGGGCTCCTGACGGCCGTGCTCGTTG
CGTCCTGGTTCACGGAGAGGCACGGGCGCCGGCCGTCCATGATCCTCGGCGGCGTCGCGTACCTCGGCGGCGCGGCGGTC
AGCGGGGGCGCCGTCAACGTGTACATGGCCATCCTCGGCAGGGCGCTGCTCGGCGTCGGCCTCGGGTTCGCCAATCAGGT
CACAACAAGAAATTTTCT--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------ACATATTCGTAAGGG---------CTACGTGGAAAA
ATATAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGACGATTTTGATGGCAGGCAGTGCCGCTGTACCTGTCGGAGATGGCGCCGGCGCGATACAGGGGAGCCTT
CAGCAACGGCTTCCAGTTCAGCCTCTGTCTCGGGGCTCTCGCCGCCACCGTCGTCAACTATGGCGCCGAGAAGATCAAGG
CTGGCTGGGGCTGGAGGCTCTCGCTGGGCCTAGCCGGCGTCCCCGCCGTGCTGCTCCTCGTCGGCGCCATCTTCCTGCCG
GAGACACCTAACAGCCTCGTCCAGCAGGGCAAAGGCCGTGGCGAGGTGAAGGCGCTGCTCCAAAAGATCAGAGGCATCGA
CGCCGTCGACGAAGAGCTGGACGACATCGTCGCCGCCAACGCAACGGGGCAGGCCGGCGACAATGGCCTGCGCCTCATCC
TGTCGCAGCGACGGTACCGACCGCAGCTTGCCATGGCCATCCTCATACCGTCCTTCACGCAGCTCACCGGGATCAACGCC
ATCGGCTTCTACGCGCCGGTGCTGCTGCGCACCATCGGCATGAGCGAGAGCGCGGCGCTGCTCTCCACCATCGTCATGGT
CATCGTCTCCTCCGCGTCCACGTTCGCGTCCATGCTCCTCGTCGATCGCTTCGGGAGGCGGACACTTCTCATCCTCGGCG
GCGTCCAAATGTTCCTCTCCGAGGTGCTCATCGGCGGCATCATGGCCGCGAAGCTCGGCGACGAGGGCCAGGTCAGCAGG
ACCTACGCCGTCGTCCTCATCTTCCTCATCGGCGTCTACTCCACCGGCTTCGGCTGGTCCTGGGGCCCGCTCAGCTGGCT
GATACCGAGCGTGATCTTCCCGCTGGAGGTCCGGTCCGCCGGGCAGAGCATCACCGTGGCGTCGGGATTCGTGTTCGCCA
TCCTCGTCGCGCAGTACTTCCTGGCCATGCTGTGCCGCTTGAAGGCGTGGTTGTTCTTCTTCATCGCCGGGTGGATCCTG
GTCATGACGGCGTTCGCGTACCTCTTCTTGCCGGAGACCAAGGGGATGCCCATTGAGCAGATTGGGAACCTGTGGGGGAA
GCACTGGTACTGGAAGAGAGTTGTGGGGGTTGACGAAGTACAGGACAGTGAGAAGCTCTGAAGCTGCTTCCACTTTCTTT
CTATGCATCAACACGATCTGAGAGCTACTCAAGACACCGAGGATGTACACAATCAATTATTTTTTTTAAA----------
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------------------
>chr3B_1_TraesCS3B01G120300
TCGGCCTTTGCACATGTGCTGGGTAGGCAGACGTCTGGTCTGCTGACATGAATGCATGTAGGAAGTTGCCCTGTCCGGTC
ACGTCCGTTGTGACCAACAGGATGCAGTGCGGAAAGCGGGTGGACGCGGCGAGAGAGGTGGTTTTGGGTCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAA
ATTTTGGACTTCCGGACTTGTTTGGACAAATTAGGTGACCGCCGTTGGATGGCAAAAAATGTTCGCTC-TGTACAGTTTA
GATGTTTAGGGGCGATTTGGTGATGCGTGTGGGAGTTGCCATAGAGGTTGTGTATTTGTGCAATTTCCTCCGACCT--TT
TATTTTTCTACAGGATTTGCAGTCCTCCATTTATCCAAAAGAAAAAACATTTTATCCAAGGAGGGCCGAACG--------
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------------AGTTACACCCACACGTGCGAATGGATGATAGGTACACTGCCAATTAAGTCAAAGCATCGCGTGGAAAA
AGTGACGGTTATGTGGCTGCGGCGCACAAACAAACAAATCTGGCATGGCATGGAGCGAAATTTCAAACCAAATGGCACAT
CAAGCTATGACTGCATCGCATTAGCCCAGCGACAGGATCCTGAAGGGCTGGAACGACGATCAGAGCTGAGCATCGCTCCA
GTCAACAGTCAACACCAGTACAGTGCACAGTACAGAGCCCTTCCGAGAAGCCAGCCCCGCTACGTTAGTCGTCAATGGAC
GCGGATTAAAGCCTTGTTGGAGTTGCCATGGTGTGTGCCAGGCTTGAGTCAGATACCAAGCTCCTGCTCTAGCTTCGGGA
CGT-------ACCATGGCCGTGGGTTTCGCTGCCGGCGGCGCTGGCGAAGACCAGAGGCAGTACGGCGGGAGGGTCACGG
CGTTCGCGGCGCTCTCCTGCATCACGGCGGCCATGGGCGGCGCCATCTTCGGCTACGACATCAGCACCGCGGGCGGG-TG
TCGTCCATGGAACCGTTCCTCAGGGACTTCTTCCCGGACGTGCACAGGCGGATGCAGGCCGGCGCGGGCGTCGGCAACTA
CTGCAAGTTCGACAGCCAGCTCCTCACGCTCTTCACCTCCTCGCTCTACGTCTCGGGGCTCCTGACGGCCGTGCTCGTTG
CGTCCTGGTTCACGGAGAGGCACGGGCGCCGGCCGTCCATGATCCTCGGCGGCGTCGCGTACCTCGGCGGCGCGGCGGTC
AGCGGGGGCGCCGTCAACGTGTACATGGCCATCCTCGGCAGGGCGCTGCTCGGCGTCGGCCTCGGGTTCGCCAATCAGGT
CACAACAAGAAATTTTCT--------------------------------------------------------------
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--------------------------------------------ACATATTCGTAAGGG---------CTACGTGGAAAA
ATATAC--------------------------------------------------------------------------
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---------TGACGATTTTGATGGCAGGCAGTGCCGCTGTACCTGTCGGAGATGGCGCCGGCGCGATACAGGGGAGCCTT
CAGCAACGGCTTCCAGTTCAGCCTCTGTCTCGGGGCTCTCGCCGCCACCGTCGTCAACTATGGCGCCGAGAAGATCAAGG
CTGGCTGGGGCTGGAGGCTCTCGCTGGGCCTAGCCGGCGTCCCCGCCGTGCTGCTCCTCGTCGGCGCCATCTTCCTGCCG
GAGACACCTAACAGCCTCGTCCAGCAGGGCAAAGGCCGTGGCGAGGTGAAGGCGCTGCTCCAAAAGATCAGAGGCATCGA
CGCCGTCGACGAAGAGCTGGACGACATCGTCGCCGCCAACGCAACGGGGCAGGCCGGCGACAATGGCCTGCGCCTCATCC
TGTCGCAGCGACGGTACCGACCGCAGCTTGCCATGGCCATCCTCATACCGTCCTTCACGCAGCTCACCGGGATCAACGCC
ATCGGCTTCTACGCGCCGGTGCTGCTGCGCACCATCGGCATGAGCGAGAGCGCGGCGCTGCTCTCCACCATCGTCATGGT
CATCGTCTCCTCCGCGTCCACGTTCGCGTCCATGCTCCTCGTCGATCGCTTCGGGAGGCGGACACTTCTCATCCTCGGCG
GCGTCCAAATGTTCCTCTCCGAGGTGCTCATCGGCGGCATCATGGCCGCGAAGCTCGGCGACGAGGGCCAGGTCAGCAGG
ACCTACGCCGTCGTCCTCATCTTCCTCATCGGCGTCTACTCCACCGGCTTCGGCTGGTCCTGGGGCCCGCTCAGCTGGCT
GATACCGAGCGTGATCTTCCCGCTGGAGGTCCGGTCCGCCGGGCAGAGCATCACCGTGGCGTCGGGATTCGTGTTCGCCA
TCCTCGTCGCGCAGTACTTCCTGGCCATGCTGTGCCGCTTGAAGGCGTGGTTGTTCTTCTTCATCGCCGGGTGGATCCTG
GTCATGACGGCGTTCGCGTACCTCTTCTTGCCGGAGACCAAGGGGATGCCCATTGAGCAGATTGGGAACCTGTGGGGGAA
GCACTGGTACTGGAAGAGAGTTGTGGGGGTTGACGAAGTACAGGACAGTGAGAAGCTCTGAAGCTGCTTCCACTTTCTTT
CTATGCATCAACACGATCTGAGAGCTACTCAAGACACCGAGGATGTACACAATCAATTATTTTTTTTAAATGCAACCAAC
AGAACAACTGCAACAAACATCGACAAAAGTCATCAAGTAAGGGCATCTTCAAAGCCGACCCTCAAACCTCCCGCAATCGT
TCGGACCGAACTTCCCGGACGCAATTTGCCATCCGACAGCGATCTGCATCGGCCCGCGGAGCGGTCCACACGTCCGTTTT
CCCGTAAACCGGAAGCAAACTCGGGGTTTTTTGCAGGTGTCGGGACACCAGTCACGTAAGACTCTGACACCCCC-AGCCA
CCGAAA------------ACCCTGCACGCACCCCGCGTCTCCATCTT-TCTCTCTTTCTCCTCATACGCTTTCTCTCTCG
TCGACGCCACCGCTATACCACCCCGGCCGCCCGCCAACCCGCTGTCAGA---------ACTACATGACCTCCACAACCTC
GACCGCTACACCACACAACCATGCTGC-CTGTGCTCAGCCACCGGTCCACGCCTCCCGTCGGTCCTCCGCCACGTAGGTA
CCATCCACCTCTACGGTAGTCAGCACGTCCGGCAAACATTTGGTGAAATGTTCGTGCTAACTTTTTTTGTCCCTTCTTT-
--GAAACAATGGATTCATACCTGGAGTACATATACGAGCACTACATTGACTCATCTGACGA-------------------
-----GGAGTACTACACGGGTGAAACGGCTATG--------------TGCAGACGTGGAGCAGGCGGAAGAGCATGTTTT
CAATTTCAGGGGATCAATCAAGGGTCATCGACTGCTCAATCAGAACA-GGGCACGGGGCCA-CTTGATGTTGATGGACGA
CTACTTG-CCGCTGATGCCCTATTTGCTGACAGTTTTCGTCGGTGCTTCCGGATGCGAAAAAATGTCTTCGATCGCCTCT
ACCATGGCGTCCGGTACTTTGATGACTACTTCATCTTGAAGAAGGATGTTGTTGGAAGGATCGGATTCTTTGATTATCAG
AAGTGTGTGGCCGCATTGTGGATGTTTGCATATGGCATGGCCGCATATTCATGGGATGAATACCTCTGGATGTCTGAGAG
CACATACGGAGCAACCAT
>chr3D_479
AAACTT--------------------------------------------------------------------------
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---TTGGACTTCCGGACCTGTTTGGAAAAATTTGGTGACTGCCGTTGGATGGCAAAAAAATGTTTGATATGTACGGTTTA
GACATTTAGGGGTGATTTGGTGATCCGTGCTGG-GTTGCCCTAGAGGTTGTGTATTTGTGCAATTTCCTTCAACTTTCTT
TATTTTTCTATAAGGT-TGCAATCCTCCATTTTTTCAAAAGAAAAAACATTTTATCCAAGGAGGACCCAACG--------
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------------AGTTACACCCACACGTGCGAATGGATGATAGGTACACTGCCAATTAAGTCAAACCATCGCGTGGAAAA
AGT------TATGCGGCTGCGGCTCACAAACAAACAAATCTGGCATGGCATGGAGCGAAATTTCAAACCAAATGGCACAT
CAAGCTATGACTGCATCGCATTAGCACAGCGACGGGATCCTCAAGGGCTGGAACGACGATGAGAGC----------TCCA
GTCAACAGTCAACACCAGTACAGTGCACAGTACAGAGCCCATCCGAGAAGGCAGCCTCGCTACGTTAGTTCTCAATCATA
GTGT--------------------------------GCTATCCTCGAGTCTGATACCAAGCTCCTACTCTAGCTTTGAAT
CGTACCATCGACCATGGCCGTGGGTTTTGCTGGTAGCGGCGGTGGCGAGGACCAGCAGCGGTATGGCGGGAGGGTCACAG
CGTTCGCGGCGCTCTCCTGCATCACGGCGGCCATGGGCGGCGCCATCTTCGGCTACGACATCGGCACCGCGGGCGGGGTG
TCGTCCATGGAACCGTTCCTGAGGGACTTCTTCCCGGACGTGCACCGGCGGATGCAGGCCGGCGCCGGCGTCGGCAACTA
CTGCAAGTTTGACAGCCAGCTCCTCACGCTCTTCACCTCCTCGCTCTACGTCTCGGGGCTCCTCACGGCCGTGCTCGTCG
CGTCGTGGTTCACGGAGAGGCACGGGCGCCGGCCGTCCATGATCCTCGGCGGCGTCGCGTACCTCGGCGGCGCCGCGGTC
AGCGGAGGGGCAGTGAACGTGTACATGGCCATCCTCGGCAGGGCGCTGCTCGGCGTCGGCCTCGGGTTCGCCAATCAGGT
TACAAAATTTTTTATCGTCATTAGTCAAGTTTTTTTAGGATCGTCATTAGTCAAGTTAATTACTCTTATTGTTTAAATAA
GTGTGTGTTTATAGGGGTAAGTATATACGCATAGGTATAATCGCTTGCGTCTGTACCGTATTTTTTTTTAAAATAAGCGT
AGTTGATTTAGTATAATTTTATATTAAATCAGTGATACTTATTTTCAAACGGAGAAATAAATACATAAAACAATAGGACT
CTATTACAAATCTCACACCAGATTTTTTTACCATGGCAAATTAAACATTTTTGAAGGTAAATTACGTTTTACTAAGGAAA
TCAAATTTAGTTGCCGAGCATGACAAATCCGTCTCATTTTATTTTCTGATAGAAAAATTGCCGTGCTTGAAACTAAATTT
GTCATCACCATGCTAATACAAATTGCCATGAAGAACGTCAGATGTGCCTAAAAATCTGACGTCATATTTTTTGCATTTTC
AAGAAAAAATGACAATTTTGTTTGTAGGCAGTGCCACTGTACCTGTCCGAGATGGCGCCGGCGCGATACAGGGGAGCCTT
CAGCAACGGTTTCCAATTCAGCCTCTGTCTCGGCGCTCTCGCCGCCACCGTCGTCAACTATGGCGCCGAGAAGATCAAGG
CTGGCTGGGGCTGGAGGCTCTCGCTGGGCCTGGCCGGCGTCCCCGCTGTGCTGCTCACCGTCGGCGCCATCTTCTTGCCG
GAGACGCCCAACAGCCTCGTTCAGCAAGGGAAAGGCCGTGGCGAGGTGAAGGCGCTGCTCCAAAAGATAAGAGGCGTCGA
CGCCGTCGACGAGGAGCTGGACGACATCGTCGCCGCCAACGCAACGGGACAGGCCGGCGACAACGGCCTGCGCCTCATCC
TGTCGCAGCGCCGGTACCGCCCGCAGCTTGCCATGGCCGTCCTGATACCGTCCTTCACGCAGCTCACCGGGATCAACGCT
ATCGGCTTCTACGCGCCGGTGCTGCTGCGCACCATTGGCATGAGCGAGAGTGCGGCACTGCTGTCCACCATCGTCATGGT
CATCATCTCCTCCGCGTCCACCTTCGCGTCCATGCTCCTCGTCGACCGCTTCGGGAGGCGGACGCTCCTCGTCCTCGGCG
GCGTCCAGATGTTCCTCTCCGAGGTGCTCATCGGCGGCATCATGGCCGCGAAGCTCCGCGACGAGGGCCAGGTCAGCAGG
GCCTACGCCGTCGTCCTAATCTTCCTCATCGCCATCTACTCCACCGGCTTCGGCTGGTCCTGGGGCCCGCTCAGCTGGCT
GATACCGAGTGAGATCTTCCCGCTGGAGGTCCGGTCCGCCGGGCAGAGCATCACGGTGGCGTCGGGATTCGTGTTCACCA
TCCTCGTCGCGCAGTACTTCCTGGCCATGCTGTGCCGGCTGAAGGCGTGGCTGTTCTTCTTCTTCGCTGGCTGGATCCTG
GTCATGACGGCGTTCGCGTACCTCTTCTTGCCGGAGACCAAGGGGATCCCCATTGAGCAGATTGGGAACCTATGGGGGAG
GCACTGGTACTGGAAGAGAGTTGTGGGGGTTGAGGAAGTAGACGACGGTCAGAAGCTCTAAAGCTTCTTCCACTTTCTTT
C-------------------------------------------------------------------------------
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>chr3A_549
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---------------------------------------------------------------------TGTACGCTTTA
GACATTTAGGGGTGATTTGATGATCCGTGTTGGAGTTGCCCTAGTGGTTGTGTATTTGTGCAATTCCTTCCAACCT--TT
TCTTTTTCTACAGGAC-TGCAGTCCTCCATTTTTCCAAAAGAAAAAACATTTTATCCAAGGAGGGCCCAACAAGTTACAC
CCACACAGTTAACCTTGCACGTGAGATGGGATGTGATTTGGTGATATCGCCTCCGACTGCCTCTCTTTGGTGCAGAGAAT
CAATTTCCATGTTCGCGATCGTTCACTCATTGATGCTGTGGTCTCGGAGATAAAAGATGGCATGTCGAATATTCTTTTTT
CTCGGGTCAAGTTTATTCGTCGGCAGTCTAATGTTTTAACTCATAATTTAGATAAATCGTGTTTGAGCTGTAATGGTTTT
TGTGTTTTCACTTCTATTCCGGAATATATCCGAGAGACTCTTTGTAATTATGTTGCTTGATTAATAAAGTGCCGACGTTT
TCTAAAAAAACAAGTTACACCCACACGTGCTAATGGATGATAGGTACACTGCCAATTAAGTCAAAGCATCGCGTGGAAAA
AGTGACGGTTATGTGGCTGCGGCGCACAAACAAACAAATCCGGCATGGCATGGAGCGAAATTTCAAACCAAATTGCACAT
CAAGCTATGACT--------------------------------------GAACGACGATGAGAACTGAGCATCGCTCCA
GTCAACAGTCAACACCAGTACAGTGCACAGTACAGAGCCCATCCGAGAAGGCAGCCTCGCCAAGTTAGTTGTCAATCATA
T--------------------------ATTGTGCTAGCTAGCCTCGAGTCAGATACCAAGCTC-TACTCTAGCTTCGCGA
CGT-------ACCATGGCCGTGGGTTTCGCTGG------CGGCGGCGAGGACCAGAGGCAGTACGGCGGGAGGGTCACCG
CGTTCGCGGCGCTCTCATGCATCACGGCGGCCATGGGCGGCGCCATCTTCGGCTACGACATCGGCACCGCGGGCGGGGTG
TCGTCCATGGAACCGTTCCTGAGGGACTTCTTCCCGGACGTGCACCGGCGGATGCAGGCCGGCGCCGGCGTCGGCAACTA
CTGCAAGTTCGACAGCCAGCTCCTCACGCTCTTCACCTCCTCGCTCTACGTCTCGGGGCTCCTCACGGCCGTGCTCGTCG
CGTCGTGGTTCACGGAGAGGCACGGGCGCCGGCCGTCCGTGATCCTCGGCGGCGTCGCGTACCTAGGCGGCGCGGCGGTC
AGCGGGGGCGCCGTCAACGTCTACATGGCCATCCTTGGCAGGGCGCTGCTCGGCGTCGGCCTTGGGTTCGCCAATCAGGT
CACAAGAAGAAATTTCCT--------------------------------------------------------------
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--------------------------------------------ACATATTTGATCGTAAATCGTAATCTACGTGGAAAA
ATATAC--------------------------------------------------------------------------
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---------TGACGGTTTTGATGGCAGGCAGTGCCACTGTACCTGTCGGAGATGGCGCCGGCGCGATACAGGGGAGCCTT
CAGCAACGGCTTCCAGTTCAGCCTCTGTCTCGGGGCTCTCGCCGCCACCGTCGTCAACTATGGCGCCGAGAAGATCAAGG
CTGGCTGGGGCTGGAGGCTCTCGCTGGGCCTAGCCGGCGTCCCCGCCGTGCTGCTCATCGTCGGCGCGAGCTTCCTGCCG
GAGACGCCCAACAGCCTCGTCCAGCAAGGCAAAGGCCGTGGCGAGGTGAAGGCGCTGCTCCAGAAGATCAGAGGCATAGA
CGCCGTCGACGAAGAGCTGGACGACATCGTCGCCGCCAACGCAATGGGACAGGCCGGCGACAACGGCCTGCGCCTCATCC
TGTCGCAGCGACGGTACCGCCCGCAGCTTGCCATGGCCGTCCTCATACCGTCCTTCACGCAGCTCACCGGGATCAACGCC
ATCGGCTTCTACGCGCCGGTGCTGCTGCGCACCATCGGCATGAGCGAGAGCGCGGCGCTGCTCTCCACCATCGTCATGGT
CATCGTCTCCTCCGCGTCTACCTTCGCGTCCATGCTCCTCGTCGACCGCTTCGGGAGACGCACGCTCCTCGTCCTCGGCG
GCGTCCAGATGTTCCTCTCCGAGGTGCTCATCGGCGCCATCATGGCCGCGAAGCTCCGCGACGAGGGCCAGGTCAGCAGG
ACCTACGCCGTCGTCCTCATCTTCCTCATCGGCGTCTACTCCACCGGCTTCGGCTGGTCCTGGGGCCCGCTCAGCTGGCT
GATACCGAGCGAGATCTTCCCGCTGGAGGTCCGGTCCGCCGGGCAGAGCATCACCGTGGCGTCGGGCTTCGTGTTCACCA
TCCTCGTCGCGCAGTACTTCCTGGCCATGCTGTGCCGCTTGAAGGCGTGGCTGTTCTTCTTCTTCGCCGGGTGGATTCTG
GTCATGACGGCGTTCGCGCACCTCTTCTTGCCGGAGACCAAGGGGATGCCCATTGAGCAGATCGGGAACCTGTGGGGGAA
GCACTGGTACTGGAAGAGAGTTGTGGGGGTTGACCAAGTACACGACGGTCAGAAGCTCTGAAG-TGCTTCCACTTTCTTT
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>chr2D_2849
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-------------------------------------TAAGGGCACCTCCAAAGCAGACCCTCAAACCGCCCGCATCTGT
CCGGACCGCGCGGTCCGGACATCCTTTGCCATCCAACGCGGCCCTGCATTCGTCCGCTGACCGATTCAGACGTTCTTTTT
CCCGCAAACCGGAAGCAAACTAGGGGGC-TTTGCAGGTGTTCAGATAGTAGCCACGTAGGACTCCGACACCCCTGGGCCA
CCCAAAGTCCCACCCAAAACCTCTCCCGGACCCCATCTCTCCATCCT-TCCCTCTTTCTCTGCATACATTTTCTCTCTTG
CCGCCGCCGCTACTCCACCACCCCGGTCGCCAGCCAAACCCTTCTCGGA---------ACTCCGTGACCTTCGTGAGCTC
CACCGCTACACTGGAC-ACCATGCTGT-TTGTCCTCCGTCGCCGCTACTCACCTCTCGT---TCGTCTGCTGCGTAGGTA
GAAGCCGCCCTTACGGTAGTCACTAC-CCCGACAAGTATTTGGTGAAATTCCCATGCTAATTTTTTGTGTCCCTTC----
-----------GATTTAGATATGGAGTACATATACATGCAATACACTGAGTCATTCGATGAATCGTCCAACA--------
----CGAAGGACTACACGGATGAGACGACAATGATGTAGGCGGTCCTTGCAGACATGGAGCATGCAGAAGAGCATGTTCT
CAATTTCAAGGGGTTAATCAAAGGTCATTGAGTGCTCAATCAAAATA-GGGTACATGGCCA-TTTGACGCCGATGGACGA
CTACTTTCCCCCCGATGCCCTATTCACTGAAAATTTTCGCCGGTGCTTTCGGATGTGAATAAATGTCTTTGATTGTCTCT
ACCATGGCGTCCGGTCCTTTGATGACTACTTCATCTTGAAGAAGGATGTCGTAGGAAGGATTGGATTCTTTGGTTACTGG
AAGTGCACGGCTGCATTGCCGATGCTTGCATATGGCACGACTGTTGGTTCATGGGACAAATACCC--AGATGTCTAAGAG
CACAT-------------
>chr3D_2968
TTTTCCA-------------------------------------------------------------------------
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--CGCAAACTCGAAACAAACTTGGGGGGCTTTGTGGGAGTCCGGACAGCAGCCACGTAGGGCACCAACACCCCTGAGCCA
TCCAAA------------ACCCCTCCCGGACCCCACGCCTCCATCCT-CCCATCTTTTCGTGCATTAGTTTTTTCTCTTG
CTTTCGTCACCTCTCCACCACCCCGGCCACCCGAACACACCCTTGCCGAAACATGGTGACTCTGTCACCT---------C
CATCGCTACACCAGGG-CTCCACACCAGTTGTCTTCCGTCACCGTTCCACGCCTCACCCC---CGTCCACCACACAAGTA
CCATCCACCCCTACGGTACTCACCATGCCCGTCAAGTGGTCGGTAAAATGCCGCTGCTAA-TTTTTTTGTCCCTTCTTCT
AAGAAGCAATGGATTTAGATATGGAGTACATATACGAGCACTATGTTGAGTC------------GTCTGACA--------
----AGGAGGAGTACACGGATAAGACGACGATGATGCAGTGGGTCCTTACAGACACCGAGGGTGCGGAAGAGCATGCTAT
CAATCTCCAGGGATCGATCAAGGGTCATCAAGTCCTCAATCGCAATA-GGACACGCGGCCA-TTTGACACTGATGGAAGA
GCACTTTTCCCCGGATGCCCTATTCGCTGACAATTTTCGCC--CGCTTCCGGATGTGAAAATATGTCTTCGATCGCCTCT
ACCATGGTGTTTGGTCCTTTGATGACTACTTCATCTTGAAGAAGGGTGTCGTGGGAAGGATTGGGTTCTCTGGTTAGCAG
AAGTGCTTGGCCGCATGGCGGATGCTTGCATATGGCACGACCGTTGATCCATGGGACGAATACCTATAGATGTGTGAGAG
CA----------------
>chr7B_3075
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------------------------------------GTCTTCATCTTGTCTCTCTTTT---TCATCCGCTTTCTCTCTTG
TCACTGTCGCCGCTCTACCACCTCGCCAGCCCGACAAGCCCTTCCCCGA---------ACTCTGCGACCT---------C
CACCGCTATACCTGGC-CTCCAGCCGC-TTGTCCTCCACCACCGGTCCACACCTCTCGT---ATGTCCGCCGCGCAGGTA
CCATCCGCCCTTACGAGGGCCACCACGTCTGGCAAGTGTTTGATGAAATGCATGTGCTAA-ATTTTTTGTCCCTTCTTT-
--GAAGCAATGGA-TTGGACATGGAGTACATATACGAGCACTACATTGAGTC------------GTCCGACA--------
----AGAGGGACTATGCGGATGACATGGTGATGATGCAGGCGGTCCTTGCAGACGTGAAGCATGTGGAAGAGTATGTTCT
CA-ATTTCACTC---GATGAAGGGTCATCGAGTGCTCAATTGGAACA-AGGCACGGGGCCATTTTGACGCTGATAGATGA
CTACTTTTCCCCCAATGCCCTATTCACAGACAATTTCCATTGGCGCTTCTGGATGAGAAAAAATGTCTTTGATCGCCTCT
ACAATGGCGT----------------------------------------------------------------------
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>chr4A_3254
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------------------------------------------------------------------CCGCCGCGCAGGTA
CCATCCACTCCTACGATGCTCACCATGCACGGCAACTGTTTGGTGTATGCACGAGCT--A-TTTTTTTGTCCCTTCATCT
TTGCAATAATGGATTCAGATATGGAGTACATATACGAGCACTACATTGAGTG------------GTCCGACAACTCGTCT
GGCGAGGAGGACTACACGGATGAGACGGCGATGATGCAAGCGGTGCTTGCTGACACGGAGCGTGTGGAGGAGCATGTTCT
CA-TTTCAACGGATAGATCAAGGGTCGTCAAGTGCTCAACCACAACCCGGGCGCGCGGACA-TTTAACGCTGATGGATGA
CTACTTTGCCCCTGATGCCCTCTTCTCTGATGATTTCCATCGACGCTTTTTGATGCACAAAAATGTCTTCGATCACCTCT
ACCATGGCGTCCGGTCCTTTGATGACTACTTGATCTTGAAGAAGGACGCTGTGGGAAGGATTGGGTTCTCTGGTTACCAA
AAGTGCCCGGCCACACTGCAGATGCTTTCATATGGCATGATCGCTGACTCGTGGGACGAGTAGTTACGGATGTCAGAGAA
CACATACGGAG-------
>SNPs
-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------S--------S-----S------S-------------------SSS-SSSSS------S-----
--SS--------S-----------S-----S---------S------------------------------S--------
----------------S---------------S----------------------------------S------------
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-------------------------S-------S-------S------------------S-------------------
----------------------------------------S---------S-----S------------S------SSSS
-S-SSSSSSSSSSSSSSSSSSSSSSSS--S---SSS--S--S--S--------------------S-----------S--
--------------------------------SSS------S------S-----------------------------S-
--------------------------------------------------------------S-----------------
--------------------S------------------------S-------------------S--------------
---------------------------------------------------------------S--------------S-
----S---------------------------------------------------------------------------
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-----S---------S----------------------------------------------------------------
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---------------------------------------------------S-S-S-SS---------------------
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-----------------------------------S--------------------------------------------
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--------------------------------------------------------S-----------------------
-----S--S-----------------S-----------------------------------------------------
------------------------------------------------S--------------S----------------
-------------------S------------------S-----------------------------------------
--------------------------------------------------------------------------------
---------------------S-----------------------S-----------------S--S---S---------
-------S------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
-----------S----------------------------------------------------------------S---
--------------------------------------------------S-----------S-----------------
--------------------------------------------------------------------------------
------------------------------------------S---S--S------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--S------S------------S------SSS--
S-------SS-SSS------SSSS----------S--SSS-SS------SS-S----S--S--S-S--S----S-S----
----S----------------S----SSS------------S-----S---S------S-----S--------S------
--S-------------------SS-S--S-----S-------------------------S-----------------S-
---S----------S-------------------------S--S--S--------------S-S------S-SSS-S---
S------------S--S-----------S---S---S------------------S----SS--S---------------
---------S------------S------------SS-------------SS--------S-------------------
-----------------S--S----------------------------S----SS--S---------------------
---------S---------S---S-----S--------------------------------S---------------S-
--------S----------------------S------------------------------S----S-S----------
------S---S-------------S-------S-----------------------------------------------
---------------S------------------------------------S--------S----------S---S---
-----SS-----------S-----S--------------S----SS----------S--------S--------------
-----------SSSSSSS
>forward_50
------------------------------ACGTCTGGTCTGCTGACATG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_1426
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTCTAGCTTCGGGA
CGTAC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1375
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TGGAC
GCGGATTAAAGCCTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_3788
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTTTGCAGGTGTCGGGACA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
