Multiple sequence alignment - TraesCS3B01G112400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G112400 chr3B 100.000 4819 0 0 1 4819 78594089 78598907 0.000000e+00 8900.0
1 TraesCS3B01G112400 chr3B 95.302 149 4 3 4673 4819 129062723 129062870 2.900000e-57 233.0
2 TraesCS3B01G112400 chr3A 93.039 4626 232 43 64 4632 61477556 61482148 0.000000e+00 6676.0
3 TraesCS3B01G112400 chr3A 90.132 456 41 4 1000 1453 61434360 61434813 1.490000e-164 590.0
4 TraesCS3B01G112400 chr3A 94.737 152 5 3 4670 4819 151946017 151945867 2.900000e-57 233.0
5 TraesCS3B01G112400 chr3D 93.773 3774 180 26 903 4640 49005238 49008992 0.000000e+00 5616.0
6 TraesCS3B01G112400 chr3D 91.150 565 34 7 290 847 49004688 49005243 0.000000e+00 752.0
7 TraesCS3B01G112400 chr3D 93.103 58 4 0 1975 2032 228212699 228212642 8.590000e-13 86.1
8 TraesCS3B01G112400 chr5B 96.980 298 9 0 4388 4685 258732961 258732664 7.200000e-138 501.0
9 TraesCS3B01G112400 chr7B 97.872 141 1 2 4681 4819 726807643 726807783 4.820000e-60 243.0
10 TraesCS3B01G112400 chr6B 97.857 140 2 1 4681 4819 482911361 482911500 1.730000e-59 241.0
11 TraesCS3B01G112400 chr5D 95.395 152 4 3 4670 4819 175607350 175607200 6.230000e-59 239.0
12 TraesCS3B01G112400 chr5D 94.737 152 5 3 4670 4819 72071538 72071688 2.900000e-57 233.0
13 TraesCS3B01G112400 chr4D 94.737 152 5 3 4670 4819 73186046 73186196 2.900000e-57 233.0
14 TraesCS3B01G112400 chr4A 97.122 139 3 1 4682 4819 743399678 743399540 2.900000e-57 233.0
15 TraesCS3B01G112400 chr1D 94.737 152 5 3 4670 4819 200943950 200943800 2.900000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G112400 chr3B 78594089 78598907 4818 False 8900 8900 100.0000 1 4819 1 chr3B.!!$F1 4818
1 TraesCS3B01G112400 chr3A 61477556 61482148 4592 False 6676 6676 93.0390 64 4632 1 chr3A.!!$F2 4568
2 TraesCS3B01G112400 chr3D 49004688 49008992 4304 False 3184 5616 92.4615 290 4640 2 chr3D.!!$F1 4350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.322322 ACCACCGGCTTTCGTATTCA 59.678 50.0 0.0 0.0 37.11 2.57 F
1132 1169 0.109964 TTGTGCGAATTTACAGCGGC 60.110 50.0 0.0 0.0 0.00 6.53 F
1267 1304 0.251916 TCGGGCTGGAACCTACAATG 59.748 55.0 0.0 0.0 0.00 2.82 F
2178 2225 0.323629 CCAGCGTTACCTTGGGAAGA 59.676 55.0 0.0 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1271 0.320421 GCCCGAGCTTCTTGTACACA 60.320 55.000 0.00 0.0 35.50 3.72 R
2600 2647 2.057922 ACCCATCTGAGACCAACTGTT 58.942 47.619 0.00 0.0 0.00 3.16 R
3107 3154 2.858344 CGTATGGTCGTTCTTCCATGAC 59.142 50.000 6.91 0.0 43.28 3.06 R
4040 4088 1.204941 GAGTCGCTAACCATCACACCT 59.795 52.381 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.319755 ACGTAGTTTACCATCCAACACG 58.680 45.455 0.00 0.00 37.78 4.49
23 24 2.669434 CGTAGTTTACCATCCAACACGG 59.331 50.000 0.00 0.00 30.53 4.94
24 25 6.064478 ACGTAGTTTACCATCCAACACGGA 62.064 45.833 0.00 0.00 45.96 4.69
36 37 5.365403 TCCAACACGGATTTGTATTTGTC 57.635 39.130 0.00 0.00 39.64 3.18
37 38 4.216687 TCCAACACGGATTTGTATTTGTCC 59.783 41.667 0.00 0.00 39.64 4.02
40 41 2.085532 CGGATTTGTATTTGTCCGCG 57.914 50.000 0.00 0.00 45.80 6.46
41 42 1.267832 CGGATTTGTATTTGTCCGCGG 60.268 52.381 22.12 22.12 45.80 6.46
42 43 2.011222 GGATTTGTATTTGTCCGCGGA 58.989 47.619 27.28 27.28 0.00 5.54
43 44 2.223180 GGATTTGTATTTGTCCGCGGAC 60.223 50.000 43.88 43.88 44.77 4.79
51 52 3.165498 GTCCGCGGACATGTTCAC 58.835 61.111 44.88 22.21 44.02 3.18
52 53 1.666553 GTCCGCGGACATGTTCACA 60.667 57.895 44.88 12.82 44.02 3.58
53 54 1.019278 GTCCGCGGACATGTTCACAT 61.019 55.000 44.88 0.00 44.02 3.21
70 71 2.095263 CACATGTCCGATTCCCACAAAC 60.095 50.000 0.00 0.00 0.00 2.93
87 88 5.058490 CACAAACCGGAAGTAAAGTTAGGA 58.942 41.667 9.46 0.00 0.00 2.94
104 105 2.433436 AGGAAATGTTTGCGGTAGTCC 58.567 47.619 0.00 0.00 33.38 3.85
136 137 4.623647 GCTTCACCAATTAAATGCCACCAT 60.624 41.667 0.00 0.00 0.00 3.55
149 150 3.694926 TGCCACCATACACAATTGATCA 58.305 40.909 13.59 0.00 0.00 2.92
160 161 9.213819 CATACACAATTGATCAGTTATTTGACG 57.786 33.333 13.59 0.00 0.00 4.35
170 171 4.019681 TCAGTTATTTGACGGGAGGATTGT 60.020 41.667 0.00 0.00 0.00 2.71
198 199 9.495754 GCTCACAAGCTATTTTAAAGTTGATAG 57.504 33.333 0.00 0.00 45.55 2.08
229 230 8.747538 ACATTTGAGGTATATAAAGTTGGACC 57.252 34.615 0.00 0.00 0.00 4.46
233 234 5.163385 TGAGGTATATAAAGTTGGACCACCG 60.163 44.000 0.00 0.00 39.42 4.94
246 247 0.322322 ACCACCGGCTTTCGTATTCA 59.678 50.000 0.00 0.00 37.11 2.57
253 254 2.845967 CGGCTTTCGTATTCATGTTTGC 59.154 45.455 0.00 0.00 0.00 3.68
254 255 3.669290 CGGCTTTCGTATTCATGTTTGCA 60.669 43.478 0.00 0.00 0.00 4.08
270 271 1.298041 GCAAACACAACCACGGACG 60.298 57.895 0.00 0.00 0.00 4.79
272 273 0.448593 CAAACACAACCACGGACGTT 59.551 50.000 0.00 0.00 0.00 3.99
282 283 4.072088 CGGACGTTTGCGCTGTCC 62.072 66.667 22.95 22.95 46.91 4.02
295 307 1.734465 CGCTGTCCATTTTGAGGAGAC 59.266 52.381 0.00 0.00 35.42 3.36
303 315 2.467566 TTTTGAGGAGACGCCCTAAC 57.532 50.000 0.00 0.00 36.49 2.34
304 316 1.640917 TTTGAGGAGACGCCCTAACT 58.359 50.000 0.00 0.00 36.49 2.24
319 337 9.356433 GACGCCCTAACTCTATTATTTCTATTC 57.644 37.037 0.00 0.00 0.00 1.75
344 362 5.134202 TCATCTAGACGCAACTTCTGAAA 57.866 39.130 0.00 0.00 0.00 2.69
351 369 4.214332 AGACGCAACTTCTGAAATTTCTCC 59.786 41.667 18.64 0.00 0.00 3.71
440 468 0.823356 ACCAAAACCGCAGCAGTGAT 60.823 50.000 0.00 0.00 0.00 3.06
719 748 2.618709 ACAAAGCTAGGCTGTTGTGTTC 59.381 45.455 0.00 0.00 39.62 3.18
732 761 1.070105 GTGTTCGGCACCAGTGGTA 59.930 57.895 16.22 0.00 42.10 3.25
787 820 3.563697 GGGGAAAGCTTAGCTAGGGTTTT 60.564 47.826 27.24 17.96 38.25 2.43
831 865 1.898574 GGCGCCTATGTGATTGGGG 60.899 63.158 22.15 0.00 40.19 4.96
848 882 2.508300 TGGGGCCAAGAATACTAGTTCC 59.492 50.000 4.39 0.00 0.00 3.62
851 885 4.452825 GGGCCAAGAATACTAGTTCCTTC 58.547 47.826 4.39 2.64 0.00 3.46
869 903 9.369672 AGTTCCTTCGATTCTAATACTAATCCT 57.630 33.333 0.00 0.00 0.00 3.24
905 940 6.956102 TTATTACCCTTGGAGTGGTTCTAA 57.044 37.500 0.00 0.00 36.04 2.10
906 941 7.519347 TTATTACCCTTGGAGTGGTTCTAAT 57.481 36.000 0.00 0.00 36.04 1.73
924 959 6.716934 TCTAATCAATGGTGACTCCTCTAC 57.283 41.667 0.00 0.00 36.31 2.59
940 975 2.497675 CTCTACTTAGCTTGGCACCTCA 59.502 50.000 0.00 0.00 0.00 3.86
1012 1049 0.172578 TGCCGGAATGAGTACTGACG 59.827 55.000 5.05 0.00 0.00 4.35
1037 1074 5.106038 TGCTCATGAATCACATTTCTTGGTC 60.106 40.000 0.00 0.00 37.07 4.02
1078 1115 5.549742 AATTTGGGCACTCTTTGAAATGA 57.450 34.783 0.00 0.00 0.00 2.57
1132 1169 0.109964 TTGTGCGAATTTACAGCGGC 60.110 50.000 0.00 0.00 0.00 6.53
1153 1190 2.266055 GAGCTGGTGAAGGGTCCG 59.734 66.667 0.00 0.00 0.00 4.79
1234 1271 5.678583 ACATACAGTGAGCTAATTGATGCT 58.321 37.500 0.00 2.77 42.82 3.79
1264 1301 2.656069 GCTCGGGCTGGAACCTACA 61.656 63.158 0.00 0.00 35.22 2.74
1266 1303 0.541863 CTCGGGCTGGAACCTACAAT 59.458 55.000 0.00 0.00 0.00 2.71
1267 1304 0.251916 TCGGGCTGGAACCTACAATG 59.748 55.000 0.00 0.00 0.00 2.82
1271 1308 0.447801 GCTGGAACCTACAATGCACG 59.552 55.000 0.00 0.00 0.00 5.34
1273 1310 1.732259 CTGGAACCTACAATGCACGAC 59.268 52.381 0.00 0.00 0.00 4.34
1274 1311 1.084289 GGAACCTACAATGCACGACC 58.916 55.000 0.00 0.00 0.00 4.79
1276 1313 2.423577 GAACCTACAATGCACGACCTT 58.576 47.619 0.00 0.00 0.00 3.50
1306 1343 1.375523 GAGGACGAATGTTGGCGGT 60.376 57.895 0.00 0.00 0.00 5.68
1445 1482 1.515020 GAGCGTCCATCTGCAGAGT 59.485 57.895 22.96 7.66 0.00 3.24
1485 1522 0.465460 TTGCTGGACAGTGAACCACC 60.465 55.000 0.00 0.00 34.49 4.61
1496 1533 4.329545 AACCACCGGATGCGCAGT 62.330 61.111 18.32 4.97 0.00 4.40
1505 1542 1.660560 GGATGCGCAGTGCCAGAATT 61.661 55.000 18.32 0.00 45.60 2.17
1513 1550 1.076549 GTGCCAGAATTCCCCACCA 59.923 57.895 0.65 0.00 0.00 4.17
1515 1552 1.682344 GCCAGAATTCCCCACCACC 60.682 63.158 0.65 0.00 0.00 4.61
1535 1572 1.522580 GATCCAGAACAGGGCGCTC 60.523 63.158 7.64 1.48 0.00 5.03
1544 1581 0.690762 ACAGGGCGCTCCTCTTTTTA 59.309 50.000 13.74 0.00 46.12 1.52
1551 1588 3.075148 GCGCTCCTCTTTTTACTCCTTT 58.925 45.455 0.00 0.00 0.00 3.11
1573 1610 3.329300 GGTGACAGTCAATGCACCT 57.671 52.632 4.32 0.00 45.26 4.00
1585 1622 0.908910 ATGCACCTACCGTTCATCCA 59.091 50.000 0.00 0.00 0.00 3.41
1596 1642 2.587956 CGTTCATCCACGACTACGAAA 58.412 47.619 0.00 0.00 43.15 3.46
1599 1645 4.662394 CGTTCATCCACGACTACGAAAAAC 60.662 45.833 0.00 0.00 43.15 2.43
1707 1753 5.127194 CAGGGACAGTTGATACAACTAGCTA 59.873 44.000 15.17 0.00 0.00 3.32
1790 1836 6.597672 GGTACATCAATGACAACCTGTATCAA 59.402 38.462 0.00 0.00 0.00 2.57
2016 2063 4.095036 CACTCGTCTCTGCACTAGTTGATA 59.905 45.833 0.00 0.00 0.00 2.15
2114 2161 2.518407 TCTTGGGCTACCTATCTCTGGA 59.482 50.000 0.00 0.00 37.76 3.86
2178 2225 0.323629 CCAGCGTTACCTTGGGAAGA 59.676 55.000 0.00 0.00 0.00 2.87
2189 2236 1.981495 CTTGGGAAGACACCTCCTTCT 59.019 52.381 0.00 0.00 39.80 2.85
2231 2278 2.048603 GGTTGCATGGGTCAGAGCC 61.049 63.158 12.14 12.14 36.00 4.70
2255 2302 5.063564 CGAGTTTAATAAGTGCCCTGAAGAC 59.936 44.000 0.00 0.00 0.00 3.01
2600 2647 2.520120 AGAGGATGACAGGGATAGACCA 59.480 50.000 0.00 0.00 41.20 4.02
3064 3111 2.648059 AGTGATTGGGCAGATAAGCAC 58.352 47.619 0.00 0.00 41.93 4.40
3107 3154 3.119708 GGAAGTAAAGGAGCAGCATGTTG 60.120 47.826 5.00 5.00 39.31 3.33
3196 3243 1.987306 TATCCGCCTCTGCACACCA 60.987 57.895 0.00 0.00 37.32 4.17
3250 3297 1.082496 GCGAACTGCAACAGCTGAC 60.082 57.895 23.35 9.97 45.45 3.51
3251 3298 1.775039 GCGAACTGCAACAGCTGACA 61.775 55.000 23.35 14.21 45.45 3.58
3342 3389 9.395707 GGTACGATATTCTACTTGTAAGATGTG 57.604 37.037 0.00 0.00 0.00 3.21
3367 3415 4.771590 AATTTTCTCATGACGCACACAT 57.228 36.364 0.00 0.00 0.00 3.21
3369 3417 3.541071 TTTCTCATGACGCACACATTG 57.459 42.857 0.00 0.00 0.00 2.82
3449 3497 2.648059 CTCCATGTTTCATCCCAGACC 58.352 52.381 0.00 0.00 0.00 3.85
3979 4027 5.587844 ACCATTATTTCTCTGCTTACTGCTG 59.412 40.000 0.00 0.00 43.37 4.41
4000 4048 5.600696 CTGTTGTTTGAAAATTACAGGGCT 58.399 37.500 10.20 0.00 32.87 5.19
4018 4066 3.374745 GGCTTTGTGTGTTTCAGTCATG 58.625 45.455 0.00 0.00 0.00 3.07
4040 4088 3.553828 AAGGTCGTGGTCTGAAGAAAA 57.446 42.857 0.00 0.00 0.00 2.29
4079 4127 1.280133 TCCAGAAGTTCATGCCTCTGG 59.720 52.381 18.67 18.67 44.29 3.86
4100 4148 2.733026 GCAAGTTTAACATTGGCTGCTG 59.267 45.455 0.00 0.00 0.00 4.41
4194 4249 0.597637 CGTAGCATGGATCCCGTGTC 60.598 60.000 9.90 5.14 42.15 3.67
4219 4274 8.367911 TCTATATGTCCATGGTCTACAATGAAC 58.632 37.037 12.58 0.00 0.00 3.18
4220 4275 4.908601 TGTCCATGGTCTACAATGAACT 57.091 40.909 12.58 0.00 0.00 3.01
4221 4276 4.832248 TGTCCATGGTCTACAATGAACTC 58.168 43.478 12.58 0.00 0.00 3.01
4249 4313 1.462616 GCACAGCCATATGGTGAACA 58.537 50.000 22.79 0.00 45.48 3.18
4251 4315 2.415893 GCACAGCCATATGGTGAACAAC 60.416 50.000 22.79 4.46 45.48 3.32
4253 4317 4.260985 CACAGCCATATGGTGAACAACTA 58.739 43.478 22.79 0.00 45.48 2.24
4254 4318 4.883585 CACAGCCATATGGTGAACAACTAT 59.116 41.667 22.79 0.00 45.48 2.12
4255 4319 6.054941 CACAGCCATATGGTGAACAACTATA 58.945 40.000 22.79 0.00 45.48 1.31
4302 4366 7.020914 ACTGAAACTTGAAGTGAACTCATTC 57.979 36.000 0.00 0.00 35.18 2.67
4349 4413 0.321564 TTGTTGTCCCTGATGCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
4371 4435 0.304098 GAGCGCATGTTGCAGAGATC 59.696 55.000 11.47 0.00 45.36 2.75
4392 4456 2.223456 CGACAGAGCAATCGTCTCAGAT 60.223 50.000 0.00 0.00 33.63 2.90
4415 4489 0.181587 TTCCTCGGCACACCTTCAAA 59.818 50.000 0.00 0.00 0.00 2.69
4431 4505 4.829492 CCTTCAAAGAGTTTCCTCCACATT 59.171 41.667 0.00 0.00 38.58 2.71
4432 4506 5.302823 CCTTCAAAGAGTTTCCTCCACATTT 59.697 40.000 0.00 0.00 38.58 2.32
4445 4519 2.749076 TCCACATTTTGATTCTCCAGCG 59.251 45.455 0.00 0.00 0.00 5.18
4451 4525 5.047802 ACATTTTGATTCTCCAGCGAATGTT 60.048 36.000 0.00 0.00 33.99 2.71
4454 4528 5.991328 TTGATTCTCCAGCGAATGTTATC 57.009 39.130 0.00 0.00 33.96 1.75
4456 4530 5.052481 TGATTCTCCAGCGAATGTTATCTG 58.948 41.667 0.00 0.00 33.96 2.90
4457 4531 2.826428 TCTCCAGCGAATGTTATCTGC 58.174 47.619 0.00 0.00 0.00 4.26
4485 4559 1.167781 TCGCTTTGACCGGGGAAAAC 61.168 55.000 6.32 0.00 0.00 2.43
4510 4584 2.265904 GGTGGAAACCGGTTCTGGC 61.266 63.158 22.53 11.48 36.40 4.85
4511 4585 2.114411 TGGAAACCGGTTCTGGCC 59.886 61.111 22.53 19.04 36.40 5.36
4528 4602 2.058595 CCTCGGTCCGATGTTCCCT 61.059 63.158 15.81 0.00 34.61 4.20
4529 4603 1.141881 CTCGGTCCGATGTTCCCTG 59.858 63.158 15.81 0.00 34.61 4.45
4530 4604 1.605058 CTCGGTCCGATGTTCCCTGT 61.605 60.000 15.81 0.00 34.61 4.00
4545 4619 3.976015 TCCCTGTTTTTCTGGTTTCTGT 58.024 40.909 0.00 0.00 33.97 3.41
4549 4623 5.334879 CCCTGTTTTTCTGGTTTCTGTATCG 60.335 44.000 0.00 0.00 33.97 2.92
4551 4625 6.425721 CCTGTTTTTCTGGTTTCTGTATCGTA 59.574 38.462 0.00 0.00 0.00 3.43
4552 4626 7.119262 CCTGTTTTTCTGGTTTCTGTATCGTAT 59.881 37.037 0.00 0.00 0.00 3.06
4562 4636 0.388006 TGTATCGTATGCGGCGATGG 60.388 55.000 12.98 0.00 46.74 3.51
4574 4648 0.393808 GGCGATGGCTGTTTTAGGGA 60.394 55.000 0.00 0.00 39.81 4.20
4584 4658 3.129462 GCTGTTTTAGGGAATGAGGCTTC 59.871 47.826 0.00 0.00 0.00 3.86
4586 4660 4.335416 TGTTTTAGGGAATGAGGCTTCAG 58.665 43.478 4.35 0.00 36.61 3.02
4609 4683 2.632512 GTTGGTCCATGGAACCATTTGT 59.367 45.455 27.12 0.00 33.90 2.83
4613 4687 3.554752 GGTCCATGGAACCATTTGTTGTG 60.555 47.826 19.95 0.00 37.29 3.33
4622 4696 4.405116 ACCATTTGTTGTGCTGAATTGT 57.595 36.364 0.00 0.00 0.00 2.71
4634 4708 3.184541 GCTGAATTGTGCATGTTGATCC 58.815 45.455 0.00 0.00 0.00 3.36
4640 4714 4.968812 TTGTGCATGTTGATCCATGTAG 57.031 40.909 11.95 0.00 43.33 2.74
4641 4715 3.954200 TGTGCATGTTGATCCATGTAGT 58.046 40.909 11.95 0.00 43.33 2.73
4642 4716 5.096443 TGTGCATGTTGATCCATGTAGTA 57.904 39.130 11.95 0.57 43.33 1.82
4643 4717 5.118286 TGTGCATGTTGATCCATGTAGTAG 58.882 41.667 11.95 0.00 43.33 2.57
4644 4718 5.118990 GTGCATGTTGATCCATGTAGTAGT 58.881 41.667 11.95 0.00 43.33 2.73
4645 4719 6.127196 TGTGCATGTTGATCCATGTAGTAGTA 60.127 38.462 11.95 0.00 43.33 1.82
4646 4720 6.931281 GTGCATGTTGATCCATGTAGTAGTAT 59.069 38.462 11.95 0.00 43.33 2.12
4647 4721 7.116948 GTGCATGTTGATCCATGTAGTAGTATC 59.883 40.741 11.95 0.00 43.33 2.24
4648 4722 7.015584 TGCATGTTGATCCATGTAGTAGTATCT 59.984 37.037 11.95 0.00 43.33 1.98
4649 4723 7.543868 GCATGTTGATCCATGTAGTAGTATCTC 59.456 40.741 11.95 0.00 43.33 2.75
4650 4724 7.526142 TGTTGATCCATGTAGTAGTATCTCC 57.474 40.000 0.00 0.00 0.00 3.71
4651 4725 7.298374 TGTTGATCCATGTAGTAGTATCTCCT 58.702 38.462 0.00 0.00 0.00 3.69
4652 4726 7.785028 TGTTGATCCATGTAGTAGTATCTCCTT 59.215 37.037 0.00 0.00 0.00 3.36
4653 4727 9.298250 GTTGATCCATGTAGTAGTATCTCCTTA 57.702 37.037 0.00 0.00 0.00 2.69
4654 4728 9.521841 TTGATCCATGTAGTAGTATCTCCTTAG 57.478 37.037 0.00 0.00 0.00 2.18
4655 4729 7.612244 TGATCCATGTAGTAGTATCTCCTTAGC 59.388 40.741 0.00 0.00 0.00 3.09
4656 4730 6.246919 TCCATGTAGTAGTATCTCCTTAGCC 58.753 44.000 0.00 0.00 0.00 3.93
4657 4731 6.010850 CCATGTAGTAGTATCTCCTTAGCCA 58.989 44.000 0.00 0.00 0.00 4.75
4658 4732 6.665680 CCATGTAGTAGTATCTCCTTAGCCAT 59.334 42.308 0.00 0.00 0.00 4.40
4659 4733 7.363355 CCATGTAGTAGTATCTCCTTAGCCATG 60.363 44.444 0.00 0.00 0.00 3.66
4660 4734 6.010850 TGTAGTAGTATCTCCTTAGCCATGG 58.989 44.000 7.63 7.63 0.00 3.66
4661 4735 5.081315 AGTAGTATCTCCTTAGCCATGGT 57.919 43.478 14.67 2.69 0.00 3.55
4662 4736 5.468658 AGTAGTATCTCCTTAGCCATGGTT 58.531 41.667 14.67 10.52 0.00 3.67
4663 4737 6.621394 AGTAGTATCTCCTTAGCCATGGTTA 58.379 40.000 14.67 9.26 0.00 2.85
4664 4738 5.810080 AGTATCTCCTTAGCCATGGTTAC 57.190 43.478 14.67 0.00 0.00 2.50
4665 4739 5.216622 AGTATCTCCTTAGCCATGGTTACA 58.783 41.667 14.67 2.29 0.00 2.41
4666 4740 4.696479 ATCTCCTTAGCCATGGTTACAG 57.304 45.455 14.67 11.30 0.00 2.74
4667 4741 3.450904 TCTCCTTAGCCATGGTTACAGT 58.549 45.455 14.67 0.00 0.00 3.55
4668 4742 3.844211 TCTCCTTAGCCATGGTTACAGTT 59.156 43.478 14.67 0.00 0.00 3.16
4669 4743 4.288626 TCTCCTTAGCCATGGTTACAGTTT 59.711 41.667 14.67 0.00 0.00 2.66
4670 4744 4.331968 TCCTTAGCCATGGTTACAGTTTG 58.668 43.478 14.67 1.17 0.00 2.93
4671 4745 3.443681 CCTTAGCCATGGTTACAGTTTGG 59.556 47.826 14.67 3.54 0.00 3.28
4672 4746 1.923356 AGCCATGGTTACAGTTTGGG 58.077 50.000 14.67 0.00 0.00 4.12
4673 4747 1.427368 AGCCATGGTTACAGTTTGGGA 59.573 47.619 14.67 0.00 0.00 4.37
4674 4748 2.158385 AGCCATGGTTACAGTTTGGGAA 60.158 45.455 14.67 0.00 0.00 3.97
4675 4749 2.630580 GCCATGGTTACAGTTTGGGAAA 59.369 45.455 14.67 0.00 0.00 3.13
4676 4750 3.306019 GCCATGGTTACAGTTTGGGAAAG 60.306 47.826 14.67 0.00 0.00 2.62
4677 4751 3.306019 CCATGGTTACAGTTTGGGAAAGC 60.306 47.826 2.57 0.00 0.00 3.51
4678 4752 1.950909 TGGTTACAGTTTGGGAAAGCG 59.049 47.619 0.00 0.00 0.00 4.68
4679 4753 1.951602 GGTTACAGTTTGGGAAAGCGT 59.048 47.619 0.00 0.00 0.00 5.07
4680 4754 2.031420 GGTTACAGTTTGGGAAAGCGTC 60.031 50.000 0.00 0.00 0.00 5.19
4681 4755 2.876550 GTTACAGTTTGGGAAAGCGTCT 59.123 45.455 0.00 0.00 0.00 4.18
4682 4756 2.922740 ACAGTTTGGGAAAGCGTCTA 57.077 45.000 0.00 0.00 0.00 2.59
4683 4757 2.490991 ACAGTTTGGGAAAGCGTCTAC 58.509 47.619 0.00 0.00 0.00 2.59
4684 4758 2.104281 ACAGTTTGGGAAAGCGTCTACT 59.896 45.455 0.00 0.00 0.00 2.57
4685 4759 2.737252 CAGTTTGGGAAAGCGTCTACTC 59.263 50.000 0.00 0.00 0.00 2.59
4686 4760 2.074576 GTTTGGGAAAGCGTCTACTCC 58.925 52.381 0.00 0.00 0.00 3.85
4687 4761 0.611714 TTGGGAAAGCGTCTACTCCC 59.388 55.000 14.73 14.73 46.77 4.30
4688 4762 0.252103 TGGGAAAGCGTCTACTCCCT 60.252 55.000 18.94 0.00 46.72 4.20
4689 4763 0.460722 GGGAAAGCGTCTACTCCCTC 59.539 60.000 14.50 0.00 43.74 4.30
4690 4764 0.460722 GGAAAGCGTCTACTCCCTCC 59.539 60.000 0.00 0.00 0.00 4.30
4691 4765 0.100861 GAAAGCGTCTACTCCCTCCG 59.899 60.000 0.00 0.00 0.00 4.63
4692 4766 0.611340 AAAGCGTCTACTCCCTCCGT 60.611 55.000 0.00 0.00 0.00 4.69
4693 4767 1.031029 AAGCGTCTACTCCCTCCGTC 61.031 60.000 0.00 0.00 0.00 4.79
4694 4768 1.451747 GCGTCTACTCCCTCCGTCT 60.452 63.158 0.00 0.00 0.00 4.18
4695 4769 0.179062 GCGTCTACTCCCTCCGTCTA 60.179 60.000 0.00 0.00 0.00 2.59
4696 4770 1.868469 CGTCTACTCCCTCCGTCTAG 58.132 60.000 0.00 0.00 0.00 2.43
4697 4771 1.540797 CGTCTACTCCCTCCGTCTAGG 60.541 61.905 0.00 0.00 42.97 3.02
4698 4772 1.490069 GTCTACTCCCTCCGTCTAGGT 59.510 57.143 0.00 0.00 41.99 3.08
4699 4773 1.489649 TCTACTCCCTCCGTCTAGGTG 59.510 57.143 0.00 0.00 41.99 4.00
4700 4774 1.212441 CTACTCCCTCCGTCTAGGTGT 59.788 57.143 0.00 0.00 41.99 4.16
4701 4775 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
4702 4776 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
4703 4777 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
4704 4778 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
4705 4779 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
4706 4780 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
4707 4781 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
4708 4782 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
4709 4783 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
4710 4784 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
4711 4785 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
4712 4786 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
4713 4787 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
4714 4788 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
4715 4789 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
4730 4804 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
4731 4805 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
4732 4806 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
4733 4807 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
4734 4808 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
4735 4809 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
4736 4810 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
4737 4811 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
4738 4812 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
4739 4813 6.480320 CGAAAACCAAATAATCCCAAAACACA 59.520 34.615 0.00 0.00 0.00 3.72
4740 4814 7.172361 CGAAAACCAAATAATCCCAAAACACAT 59.828 33.333 0.00 0.00 0.00 3.21
4741 4815 9.495572 GAAAACCAAATAATCCCAAAACACATA 57.504 29.630 0.00 0.00 0.00 2.29
4742 4816 9.500785 AAAACCAAATAATCCCAAAACACATAG 57.499 29.630 0.00 0.00 0.00 2.23
4743 4817 6.639563 ACCAAATAATCCCAAAACACATAGC 58.360 36.000 0.00 0.00 0.00 2.97
4744 4818 5.748152 CCAAATAATCCCAAAACACATAGCG 59.252 40.000 0.00 0.00 0.00 4.26
4745 4819 2.939460 AATCCCAAAACACATAGCGC 57.061 45.000 0.00 0.00 0.00 5.92
4746 4820 0.732571 ATCCCAAAACACATAGCGCG 59.267 50.000 0.00 0.00 0.00 6.86
4747 4821 1.136565 CCCAAAACACATAGCGCGG 59.863 57.895 8.83 0.00 0.00 6.46
4748 4822 1.582610 CCCAAAACACATAGCGCGGT 61.583 55.000 17.70 17.70 0.00 5.68
4749 4823 0.454285 CCAAAACACATAGCGCGGTG 60.454 55.000 23.02 22.38 40.78 4.94
4750 4824 1.065031 CAAAACACATAGCGCGGTGC 61.065 55.000 23.02 5.16 46.98 5.01
4760 4834 3.622459 GCGCGGTGCATTAAATTCT 57.378 47.368 8.83 0.00 45.45 2.40
4761 4835 2.748461 GCGCGGTGCATTAAATTCTA 57.252 45.000 8.83 0.00 45.45 2.10
4762 4836 2.372350 GCGCGGTGCATTAAATTCTAC 58.628 47.619 8.83 0.00 45.45 2.59
4763 4837 2.853281 GCGCGGTGCATTAAATTCTACC 60.853 50.000 8.83 0.00 45.45 3.18
4764 4838 2.612212 CGCGGTGCATTAAATTCTACCT 59.388 45.455 0.00 0.00 0.00 3.08
4765 4839 3.303132 CGCGGTGCATTAAATTCTACCTC 60.303 47.826 0.00 0.00 0.00 3.85
4766 4840 3.303132 GCGGTGCATTAAATTCTACCTCG 60.303 47.826 0.00 0.00 0.00 4.63
4767 4841 3.869246 CGGTGCATTAAATTCTACCTCGT 59.131 43.478 0.00 0.00 0.00 4.18
4768 4842 4.331717 CGGTGCATTAAATTCTACCTCGTT 59.668 41.667 0.00 0.00 0.00 3.85
4769 4843 5.163794 CGGTGCATTAAATTCTACCTCGTTT 60.164 40.000 0.00 0.00 0.00 3.60
4770 4844 6.255950 GGTGCATTAAATTCTACCTCGTTTC 58.744 40.000 0.00 0.00 0.00 2.78
4771 4845 6.093633 GGTGCATTAAATTCTACCTCGTTTCT 59.906 38.462 0.00 0.00 0.00 2.52
4772 4846 7.361799 GGTGCATTAAATTCTACCTCGTTTCTT 60.362 37.037 0.00 0.00 0.00 2.52
4773 4847 7.481798 GTGCATTAAATTCTACCTCGTTTCTTG 59.518 37.037 0.00 0.00 0.00 3.02
4774 4848 7.174253 TGCATTAAATTCTACCTCGTTTCTTGT 59.826 33.333 0.00 0.00 0.00 3.16
4775 4849 8.021396 GCATTAAATTCTACCTCGTTTCTTGTT 58.979 33.333 0.00 0.00 0.00 2.83
4776 4850 9.893305 CATTAAATTCTACCTCGTTTCTTGTTT 57.107 29.630 0.00 0.00 0.00 2.83
4778 4852 7.803279 AAATTCTACCTCGTTTCTTGTTTCT 57.197 32.000 0.00 0.00 0.00 2.52
4779 4853 7.803279 AATTCTACCTCGTTTCTTGTTTCTT 57.197 32.000 0.00 0.00 0.00 2.52
4780 4854 6.598753 TTCTACCTCGTTTCTTGTTTCTTG 57.401 37.500 0.00 0.00 0.00 3.02
4781 4855 5.909477 TCTACCTCGTTTCTTGTTTCTTGA 58.091 37.500 0.00 0.00 0.00 3.02
4782 4856 4.877323 ACCTCGTTTCTTGTTTCTTGAC 57.123 40.909 0.00 0.00 0.00 3.18
4783 4857 4.258543 ACCTCGTTTCTTGTTTCTTGACA 58.741 39.130 0.00 0.00 0.00 3.58
4784 4858 4.881850 ACCTCGTTTCTTGTTTCTTGACAT 59.118 37.500 0.00 0.00 0.00 3.06
4785 4859 6.053005 ACCTCGTTTCTTGTTTCTTGACATA 58.947 36.000 0.00 0.00 0.00 2.29
4786 4860 6.710744 ACCTCGTTTCTTGTTTCTTGACATAT 59.289 34.615 0.00 0.00 0.00 1.78
4787 4861 7.095187 ACCTCGTTTCTTGTTTCTTGACATATC 60.095 37.037 0.00 0.00 0.00 1.63
4788 4862 7.095229 CCTCGTTTCTTGTTTCTTGACATATCA 60.095 37.037 0.00 0.00 0.00 2.15
4789 4863 8.148807 TCGTTTCTTGTTTCTTGACATATCAA 57.851 30.769 0.00 0.00 42.73 2.57
4790 4864 8.067784 TCGTTTCTTGTTTCTTGACATATCAAC 58.932 33.333 0.00 0.00 40.01 3.18
4791 4865 7.323656 CGTTTCTTGTTTCTTGACATATCAACC 59.676 37.037 0.00 0.00 40.01 3.77
4792 4866 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
4793 4867 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
4794 4868 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
4795 4869 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
4798 4872 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
4799 4873 9.994432 GTTTCTTGACATATCAACCAATAAGAG 57.006 33.333 0.00 0.00 40.01 2.85
4800 4874 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
4802 4876 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
4803 4877 9.334947 CTTGACATATCAACCAATAAGAGATGT 57.665 33.333 0.00 0.00 44.20 3.06
4804 4878 8.667076 TGACATATCAACCAATAAGAGATGTG 57.333 34.615 6.64 0.00 42.33 3.21
4805 4879 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
4806 4880 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
4807 4881 4.235079 TCAACCAATAAGAGATGTGGGG 57.765 45.455 0.00 0.00 35.32 4.96
4808 4882 3.591527 TCAACCAATAAGAGATGTGGGGT 59.408 43.478 0.00 0.00 35.32 4.95
4809 4883 3.652057 ACCAATAAGAGATGTGGGGTG 57.348 47.619 0.00 0.00 35.32 4.61
4810 4884 2.919602 ACCAATAAGAGATGTGGGGTGT 59.080 45.455 0.00 0.00 35.32 4.16
4811 4885 3.282021 CCAATAAGAGATGTGGGGTGTG 58.718 50.000 0.00 0.00 0.00 3.82
4812 4886 2.684881 CAATAAGAGATGTGGGGTGTGC 59.315 50.000 0.00 0.00 0.00 4.57
4813 4887 1.357137 TAAGAGATGTGGGGTGTGCA 58.643 50.000 0.00 0.00 0.00 4.57
4814 4888 0.700564 AAGAGATGTGGGGTGTGCAT 59.299 50.000 0.00 0.00 0.00 3.96
4815 4889 0.034767 AGAGATGTGGGGTGTGCATG 60.035 55.000 0.00 0.00 0.00 4.06
4816 4890 0.322816 GAGATGTGGGGTGTGCATGT 60.323 55.000 0.00 0.00 0.00 3.21
4817 4891 0.112995 AGATGTGGGGTGTGCATGTT 59.887 50.000 0.00 0.00 0.00 2.71
4818 4892 0.968405 GATGTGGGGTGTGCATGTTT 59.032 50.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.365820 CGTGTTGGATGGTAAACTACGTC 59.634 47.826 0.00 0.00 31.89 4.34
1 2 3.319755 CGTGTTGGATGGTAAACTACGT 58.680 45.455 0.00 0.00 31.89 3.57
2 3 2.669434 CCGTGTTGGATGGTAAACTACG 59.331 50.000 0.00 0.00 42.00 3.51
3 4 3.929094 TCCGTGTTGGATGGTAAACTAC 58.071 45.455 0.00 0.00 43.74 2.73
15 16 4.481463 GGACAAATACAAATCCGTGTTGG 58.519 43.478 0.00 0.00 40.09 3.77
22 23 2.011222 TCCGCGGACAAATACAAATCC 58.989 47.619 27.28 0.00 0.00 3.01
23 24 3.047613 GTCCGCGGACAAATACAAATC 57.952 47.619 44.88 19.65 44.02 2.17
34 35 1.019278 ATGTGAACATGTCCGCGGAC 61.019 55.000 43.88 43.88 44.77 4.79
35 36 1.018752 CATGTGAACATGTCCGCGGA 61.019 55.000 27.28 27.28 46.40 5.54
36 37 1.425031 CATGTGAACATGTCCGCGG 59.575 57.895 22.12 22.12 46.40 6.46
44 45 2.026356 TGGGAATCGGACATGTGAACAT 60.026 45.455 1.15 0.00 36.96 2.71
45 46 1.349357 TGGGAATCGGACATGTGAACA 59.651 47.619 1.15 0.00 0.00 3.18
46 47 1.737793 GTGGGAATCGGACATGTGAAC 59.262 52.381 1.15 0.00 0.00 3.18
47 48 1.349357 TGTGGGAATCGGACATGTGAA 59.651 47.619 1.15 0.00 0.00 3.18
48 49 0.980423 TGTGGGAATCGGACATGTGA 59.020 50.000 1.15 0.00 0.00 3.58
49 50 1.819928 TTGTGGGAATCGGACATGTG 58.180 50.000 1.15 0.00 0.00 3.21
50 51 2.159382 GTTTGTGGGAATCGGACATGT 58.841 47.619 0.00 0.00 0.00 3.21
51 52 1.472480 GGTTTGTGGGAATCGGACATG 59.528 52.381 0.00 0.00 0.00 3.21
52 53 1.834188 GGTTTGTGGGAATCGGACAT 58.166 50.000 0.00 0.00 0.00 3.06
53 54 0.604243 CGGTTTGTGGGAATCGGACA 60.604 55.000 0.00 0.00 29.78 4.02
54 55 2.168054 CGGTTTGTGGGAATCGGAC 58.832 57.895 0.00 0.00 29.78 4.79
55 56 4.705746 CGGTTTGTGGGAATCGGA 57.294 55.556 0.00 0.00 29.78 4.55
56 57 3.585856 CCGGTTTGTGGGAATCGG 58.414 61.111 0.00 0.00 45.72 4.18
57 58 0.802494 CTTCCGGTTTGTGGGAATCG 59.198 55.000 0.00 0.00 41.26 3.34
58 59 1.905637 ACTTCCGGTTTGTGGGAATC 58.094 50.000 0.00 0.00 41.26 2.52
59 60 3.512219 TTACTTCCGGTTTGTGGGAAT 57.488 42.857 0.00 0.00 41.26 3.01
60 61 3.215975 CTTTACTTCCGGTTTGTGGGAA 58.784 45.455 0.00 0.00 39.92 3.97
61 62 2.173143 ACTTTACTTCCGGTTTGTGGGA 59.827 45.455 0.00 0.00 0.00 4.37
62 63 2.578786 ACTTTACTTCCGGTTTGTGGG 58.421 47.619 0.00 0.00 0.00 4.61
70 71 6.812879 AACATTTCCTAACTTTACTTCCGG 57.187 37.500 0.00 0.00 0.00 5.14
108 109 3.425404 CATTTAATTGGTGAAGCGGACG 58.575 45.455 0.00 0.00 0.00 4.79
136 137 7.148323 CCCGTCAAATAACTGATCAATTGTGTA 60.148 37.037 5.13 0.00 0.00 2.90
149 150 4.569719 ACAATCCTCCCGTCAAATAACT 57.430 40.909 0.00 0.00 0.00 2.24
210 211 5.295152 CGGTGGTCCAACTTTATATACCTC 58.705 45.833 5.12 0.00 0.00 3.85
218 219 0.475044 AAGCCGGTGGTCCAACTTTA 59.525 50.000 5.12 0.00 0.00 1.85
219 220 0.396556 AAAGCCGGTGGTCCAACTTT 60.397 50.000 5.12 5.15 35.23 2.66
228 229 1.330521 CATGAATACGAAAGCCGGTGG 59.669 52.381 1.90 0.00 43.93 4.61
229 230 2.006888 ACATGAATACGAAAGCCGGTG 58.993 47.619 1.90 0.00 43.93 4.94
233 234 3.832276 TGCAAACATGAATACGAAAGCC 58.168 40.909 0.00 0.00 0.00 4.35
253 254 0.448593 AACGTCCGTGGTTGTGTTTG 59.551 50.000 0.00 0.00 0.00 2.93
254 255 1.135632 CAAACGTCCGTGGTTGTGTTT 60.136 47.619 0.00 0.00 0.00 2.83
262 263 4.368808 CAGCGCAAACGTCCGTGG 62.369 66.667 11.47 0.00 42.83 4.94
265 266 4.072088 GGACAGCGCAAACGTCCG 62.072 66.667 18.42 0.00 39.86 4.79
270 271 2.053627 CTCAAAATGGACAGCGCAAAC 58.946 47.619 11.47 0.00 0.00 2.93
272 273 0.597568 CCTCAAAATGGACAGCGCAA 59.402 50.000 11.47 0.00 0.00 4.85
282 283 2.678336 GTTAGGGCGTCTCCTCAAAATG 59.322 50.000 0.00 0.00 38.30 2.32
295 307 9.877178 ATGAATAGAAATAATAGAGTTAGGGCG 57.123 33.333 0.00 0.00 0.00 6.13
319 337 5.105063 TCAGAAGTTGCGTCTAGATGAATG 58.895 41.667 16.39 0.20 0.00 2.67
332 350 7.719778 AAAATGGAGAAATTTCAGAAGTTGC 57.280 32.000 19.99 4.40 0.00 4.17
366 386 2.898729 ATGACACATAGCTCTTCCGG 57.101 50.000 0.00 0.00 0.00 5.14
370 390 6.006449 ACAAAGGAAATGACACATAGCTCTT 58.994 36.000 0.00 0.00 0.00 2.85
375 395 6.455646 GCGTCTACAAAGGAAATGACACATAG 60.456 42.308 0.00 0.00 0.00 2.23
686 714 1.131420 GCTTTGTTCTCGCTGCTCG 59.869 57.895 0.00 0.00 40.15 5.03
719 748 0.178068 AAGCTATACCACTGGTGCCG 59.822 55.000 11.32 0.00 36.19 5.69
726 755 2.700897 CCCACTGCTAAGCTATACCACT 59.299 50.000 0.00 0.00 0.00 4.00
727 756 2.698797 TCCCACTGCTAAGCTATACCAC 59.301 50.000 0.00 0.00 0.00 4.16
732 761 2.752030 TCACTCCCACTGCTAAGCTAT 58.248 47.619 0.00 0.00 0.00 2.97
764 797 0.474614 CCCTAGCTAAGCTTTCCCCC 59.525 60.000 3.20 0.00 40.44 5.40
765 798 1.214217 ACCCTAGCTAAGCTTTCCCC 58.786 55.000 3.20 0.00 40.44 4.81
766 799 3.367646 AAACCCTAGCTAAGCTTTCCC 57.632 47.619 3.20 0.00 40.44 3.97
767 800 4.332828 TGAAAACCCTAGCTAAGCTTTCC 58.667 43.478 3.20 0.00 40.44 3.13
768 801 4.142578 GCTGAAAACCCTAGCTAAGCTTTC 60.143 45.833 3.20 10.36 40.44 2.62
773 806 2.680339 GCTGCTGAAAACCCTAGCTAAG 59.320 50.000 0.00 0.00 38.25 2.18
787 820 2.032528 CAAGTTCCCCGCTGCTGA 59.967 61.111 0.00 0.00 0.00 4.26
831 865 5.007385 TCGAAGGAACTAGTATTCTTGGC 57.993 43.478 0.00 0.00 38.49 4.52
864 898 9.696572 GGGTAATAAAGGAAAGAAACTAGGATT 57.303 33.333 0.00 0.00 0.00 3.01
865 899 9.070210 AGGGTAATAAAGGAAAGAAACTAGGAT 57.930 33.333 0.00 0.00 0.00 3.24
866 900 8.458951 AGGGTAATAAAGGAAAGAAACTAGGA 57.541 34.615 0.00 0.00 0.00 2.94
867 901 8.957466 CAAGGGTAATAAAGGAAAGAAACTAGG 58.043 37.037 0.00 0.00 0.00 3.02
868 902 8.957466 CCAAGGGTAATAAAGGAAAGAAACTAG 58.043 37.037 0.00 0.00 0.00 2.57
869 903 8.671409 TCCAAGGGTAATAAAGGAAAGAAACTA 58.329 33.333 0.00 0.00 0.00 2.24
870 904 7.532199 TCCAAGGGTAATAAAGGAAAGAAACT 58.468 34.615 0.00 0.00 0.00 2.66
871 905 7.450634 ACTCCAAGGGTAATAAAGGAAAGAAAC 59.549 37.037 0.00 0.00 0.00 2.78
872 906 7.450323 CACTCCAAGGGTAATAAAGGAAAGAAA 59.550 37.037 0.00 0.00 0.00 2.52
884 919 5.491078 TGATTAGAACCACTCCAAGGGTAAT 59.509 40.000 0.00 0.00 36.05 1.89
886 921 4.431378 TGATTAGAACCACTCCAAGGGTA 58.569 43.478 0.00 0.00 36.05 3.69
887 922 3.256704 TGATTAGAACCACTCCAAGGGT 58.743 45.455 0.00 0.00 39.65 4.34
905 940 5.069781 GCTAAGTAGAGGAGTCACCATTGAT 59.930 44.000 0.00 0.00 42.04 2.57
906 941 4.402793 GCTAAGTAGAGGAGTCACCATTGA 59.597 45.833 0.00 0.00 42.04 2.57
924 959 2.165030 CCAATTGAGGTGCCAAGCTAAG 59.835 50.000 7.12 0.00 33.19 2.18
1012 1049 5.100259 CCAAGAAATGTGATTCATGAGCAC 58.900 41.667 18.59 18.59 36.81 4.40
1078 1115 1.274167 CCTGCCAAACATGAATGCACT 59.726 47.619 0.00 0.00 0.00 4.40
1132 1169 4.101448 CCCTTCACCAGCTCCCCG 62.101 72.222 0.00 0.00 0.00 5.73
1153 1190 0.755327 CCCCGAATTCCACCCCATTC 60.755 60.000 0.00 0.00 0.00 2.67
1225 1262 4.763793 AGCTTCTTGTACACAGCATCAATT 59.236 37.500 18.53 0.00 0.00 2.32
1231 1268 1.605457 CCGAGCTTCTTGTACACAGCA 60.605 52.381 18.53 1.83 0.00 4.41
1234 1271 0.320421 GCCCGAGCTTCTTGTACACA 60.320 55.000 0.00 0.00 35.50 3.72
1271 1308 2.358737 CCCCTGTGCACGAAGGTC 60.359 66.667 19.01 0.00 0.00 3.85
1273 1310 2.046892 CTCCCCTGTGCACGAAGG 60.047 66.667 14.86 14.86 0.00 3.46
1274 1311 2.046892 CCTCCCCTGTGCACGAAG 60.047 66.667 13.13 4.66 0.00 3.79
1276 1313 3.311110 GTCCTCCCCTGTGCACGA 61.311 66.667 13.13 1.93 0.00 4.35
1279 1316 1.918293 ATTCGTCCTCCCCTGTGCA 60.918 57.895 0.00 0.00 0.00 4.57
1306 1343 4.393155 AAGTGCCGATGAGCGCCA 62.393 61.111 2.29 1.52 44.45 5.69
1496 1533 1.076549 GTGGTGGGGAATTCTGGCA 59.923 57.895 5.23 0.00 0.00 4.92
1497 1534 1.682344 GGTGGTGGGGAATTCTGGC 60.682 63.158 5.23 0.00 0.00 4.85
1498 1535 0.323725 CTGGTGGTGGGGAATTCTGG 60.324 60.000 5.23 0.00 0.00 3.86
1505 1542 1.616327 CTGGATCTGGTGGTGGGGA 60.616 63.158 0.00 0.00 0.00 4.81
1513 1550 1.903877 CGCCCTGTTCTGGATCTGGT 61.904 60.000 0.00 0.00 0.00 4.00
1515 1552 1.817099 GCGCCCTGTTCTGGATCTG 60.817 63.158 0.00 0.00 0.00 2.90
1535 1572 6.003950 TCACCATCAAAGGAGTAAAAAGAGG 58.996 40.000 0.00 0.00 0.00 3.69
1544 1581 2.705658 TGACTGTCACCATCAAAGGAGT 59.294 45.455 6.36 0.00 0.00 3.85
1551 1588 2.153645 GTGCATTGACTGTCACCATCA 58.846 47.619 10.56 3.79 0.00 3.07
1561 1598 1.346395 TGAACGGTAGGTGCATTGACT 59.654 47.619 0.00 0.00 0.00 3.41
1573 1610 1.398041 CGTAGTCGTGGATGAACGGTA 59.602 52.381 0.00 0.00 43.73 4.02
1585 1622 2.798847 GCTCCTTGTTTTTCGTAGTCGT 59.201 45.455 0.00 0.00 38.33 4.34
1596 1642 1.531602 GCCCTGGTGCTCCTTGTTT 60.532 57.895 6.34 0.00 34.23 2.83
1599 1645 4.748144 GGGCCCTGGTGCTCCTTG 62.748 72.222 17.04 0.00 34.23 3.61
1707 1753 6.119536 TCGTCATACAGCCCAATTAAAAGAT 58.880 36.000 0.00 0.00 0.00 2.40
1812 1859 7.531857 AATCAGTGGACTATCACTATACCAG 57.468 40.000 0.00 0.00 45.24 4.00
2114 2161 6.336566 TGTTTTGTTTACAATGACAGCATGT 58.663 32.000 0.00 0.00 44.40 3.21
2178 2225 3.108376 GGGACTTATCAGAAGGAGGTGT 58.892 50.000 0.00 0.00 0.00 4.16
2231 2278 5.063564 GTCTTCAGGGCACTTATTAAACTCG 59.936 44.000 0.00 0.00 0.00 4.18
2354 2401 3.618690 GCTATCAGCGGAAAGGGATAT 57.381 47.619 0.00 0.00 0.00 1.63
2600 2647 2.057922 ACCCATCTGAGACCAACTGTT 58.942 47.619 0.00 0.00 0.00 3.16
2663 2710 4.149922 TCGAACTCATTTGTAAAGTGCTCG 59.850 41.667 0.00 0.00 33.04 5.03
3064 3111 5.009631 TCCCACATATCCACAAAAGACTTG 58.990 41.667 0.00 0.00 0.00 3.16
3107 3154 2.858344 CGTATGGTCGTTCTTCCATGAC 59.142 50.000 6.91 0.00 43.28 3.06
3196 3243 4.229582 TCCTGGTGGCCATTACTTATTCTT 59.770 41.667 9.72 0.00 30.82 2.52
3250 3297 3.829948 AGCACGCAAAGAATCTTCATTG 58.170 40.909 0.00 4.06 38.51 2.82
3251 3298 4.022935 TGAAGCACGCAAAGAATCTTCATT 60.023 37.500 0.00 0.00 36.15 2.57
3342 3389 5.912396 TGTGTGCGTCATGAGAAAATTAAAC 59.088 36.000 0.00 0.00 0.00 2.01
3367 3415 4.252878 TGAATCTCTGCGCTTGATAACAA 58.747 39.130 9.73 0.00 34.65 2.83
3369 3417 4.115516 TCTGAATCTCTGCGCTTGATAAC 58.884 43.478 9.73 8.11 0.00 1.89
3449 3497 2.345641 CGCCAGAATAGTGAGTTTGTCG 59.654 50.000 0.00 0.00 0.00 4.35
3979 4027 6.315144 ACAAAGCCCTGTAATTTTCAAACAAC 59.685 34.615 0.00 0.00 0.00 3.32
4000 4048 5.650266 ACCTTACATGACTGAAACACACAAA 59.350 36.000 0.00 0.00 0.00 2.83
4018 4066 3.655276 TTCTTCAGACCACGACCTTAC 57.345 47.619 0.00 0.00 0.00 2.34
4040 4088 1.204941 GAGTCGCTAACCATCACACCT 59.795 52.381 0.00 0.00 0.00 4.00
4079 4127 2.733026 CAGCAGCCAATGTTAAACTTGC 59.267 45.455 0.00 0.00 0.00 4.01
4131 4179 4.722361 AAACGAGAACCATACTCCTCTC 57.278 45.455 0.00 0.00 0.00 3.20
4194 4249 8.370940 AGTTCATTGTAGACCATGGACATATAG 58.629 37.037 21.47 2.60 0.00 1.31
4219 4274 2.743928 GCTGTGCCAACGGAGGAG 60.744 66.667 0.00 0.00 34.25 3.69
4249 4313 7.230108 CACAAATGGGATGAATGAGCTATAGTT 59.770 37.037 0.84 0.00 0.00 2.24
4251 4315 6.150641 CCACAAATGGGATGAATGAGCTATAG 59.849 42.308 0.00 0.00 43.04 1.31
4253 4317 4.831155 CCACAAATGGGATGAATGAGCTAT 59.169 41.667 0.00 0.00 43.04 2.97
4254 4318 4.209538 CCACAAATGGGATGAATGAGCTA 58.790 43.478 0.00 0.00 43.04 3.32
4255 4319 3.028850 CCACAAATGGGATGAATGAGCT 58.971 45.455 0.00 0.00 43.04 4.09
4371 4435 1.131315 TCTGAGACGATTGCTCTGTCG 59.869 52.381 0.00 0.00 43.13 4.35
4392 4456 0.400213 AAGGTGTGCCGAGGAAATCA 59.600 50.000 0.00 0.00 40.50 2.57
4415 4489 6.432472 GAGAATCAAAATGTGGAGGAAACTCT 59.568 38.462 0.00 0.00 46.83 3.24
4431 4505 6.037500 CAGATAACATTCGCTGGAGAATCAAA 59.962 38.462 0.00 0.00 38.66 2.69
4432 4506 5.525012 CAGATAACATTCGCTGGAGAATCAA 59.475 40.000 0.00 0.00 38.66 2.57
4445 4519 4.375807 CGAAGCTGATCGCAGATAACATTC 60.376 45.833 11.20 4.08 45.17 2.67
4472 4546 1.557832 CTATCTGGTTTTCCCCGGTCA 59.442 52.381 0.00 0.00 39.73 4.02
4485 4559 0.909623 ACCGGTTTCCACCTATCTGG 59.090 55.000 0.00 0.00 41.64 3.86
4495 4569 1.674651 GAGGCCAGAACCGGTTTCC 60.675 63.158 23.22 18.94 34.32 3.13
4497 4571 2.032071 CGAGGCCAGAACCGGTTT 59.968 61.111 23.22 8.75 33.69 3.27
4510 4584 2.058595 AGGGAACATCGGACCGAGG 61.059 63.158 25.90 25.90 43.41 4.63
4511 4585 1.141881 CAGGGAACATCGGACCGAG 59.858 63.158 22.99 15.92 39.91 4.63
4528 4602 7.572353 GCATACGATACAGAAACCAGAAAAACA 60.572 37.037 0.00 0.00 0.00 2.83
4529 4603 6.741358 GCATACGATACAGAAACCAGAAAAAC 59.259 38.462 0.00 0.00 0.00 2.43
4530 4604 6.401688 CGCATACGATACAGAAACCAGAAAAA 60.402 38.462 0.00 0.00 43.93 1.94
4549 4623 1.714899 AAACAGCCATCGCCGCATAC 61.715 55.000 0.00 0.00 34.57 2.39
4551 4625 1.029408 TAAAACAGCCATCGCCGCAT 61.029 50.000 0.00 0.00 34.57 4.73
4552 4626 1.643868 CTAAAACAGCCATCGCCGCA 61.644 55.000 0.00 0.00 34.57 5.69
4562 4636 2.728007 AGCCTCATTCCCTAAAACAGC 58.272 47.619 0.00 0.00 0.00 4.40
4566 4640 4.202567 ACACTGAAGCCTCATTCCCTAAAA 60.203 41.667 0.00 0.00 0.00 1.52
4569 4643 2.551270 ACACTGAAGCCTCATTCCCTA 58.449 47.619 0.00 0.00 0.00 3.53
4574 4648 2.508526 GACCAACACTGAAGCCTCATT 58.491 47.619 0.00 0.00 0.00 2.57
4584 4658 1.247567 GGTTCCATGGACCAACACTG 58.752 55.000 15.91 0.00 0.00 3.66
4586 4660 1.923356 ATGGTTCCATGGACCAACAC 58.077 50.000 28.60 18.76 37.07 3.32
4609 4683 3.124560 CAACATGCACAATTCAGCACAA 58.875 40.909 3.63 0.00 44.49 3.33
4613 4687 3.184541 GGATCAACATGCACAATTCAGC 58.815 45.455 0.00 0.00 0.00 4.26
4634 4708 7.363355 CCATGGCTAAGGAGATACTACTACATG 60.363 44.444 0.00 0.00 30.00 3.21
4640 4714 5.810080 AACCATGGCTAAGGAGATACTAC 57.190 43.478 13.04 0.00 0.00 2.73
4641 4715 6.378745 TGTAACCATGGCTAAGGAGATACTA 58.621 40.000 13.04 0.00 0.00 1.82
4642 4716 5.216622 TGTAACCATGGCTAAGGAGATACT 58.783 41.667 13.04 0.00 0.00 2.12
4643 4717 5.070580 ACTGTAACCATGGCTAAGGAGATAC 59.929 44.000 13.04 2.50 0.00 2.24
4644 4718 5.216622 ACTGTAACCATGGCTAAGGAGATA 58.783 41.667 13.04 0.00 0.00 1.98
4645 4719 4.040755 ACTGTAACCATGGCTAAGGAGAT 58.959 43.478 13.04 0.00 0.00 2.75
4646 4720 3.450904 ACTGTAACCATGGCTAAGGAGA 58.549 45.455 13.04 0.00 0.00 3.71
4647 4721 3.914426 ACTGTAACCATGGCTAAGGAG 57.086 47.619 13.04 3.77 0.00 3.69
4648 4722 4.331968 CAAACTGTAACCATGGCTAAGGA 58.668 43.478 13.04 0.00 0.00 3.36
4649 4723 3.443681 CCAAACTGTAACCATGGCTAAGG 59.556 47.826 13.04 2.97 0.00 2.69
4650 4724 3.443681 CCCAAACTGTAACCATGGCTAAG 59.556 47.826 13.04 7.22 0.00 2.18
4651 4725 3.074687 TCCCAAACTGTAACCATGGCTAA 59.925 43.478 13.04 0.00 0.00 3.09
4652 4726 2.645297 TCCCAAACTGTAACCATGGCTA 59.355 45.455 13.04 0.00 0.00 3.93
4653 4727 1.427368 TCCCAAACTGTAACCATGGCT 59.573 47.619 13.04 0.95 0.00 4.75
4654 4728 1.917872 TCCCAAACTGTAACCATGGC 58.082 50.000 13.04 0.00 0.00 4.40
4655 4729 3.306019 GCTTTCCCAAACTGTAACCATGG 60.306 47.826 11.19 11.19 0.00 3.66
4656 4730 3.611530 CGCTTTCCCAAACTGTAACCATG 60.612 47.826 0.00 0.00 0.00 3.66
4657 4731 2.556622 CGCTTTCCCAAACTGTAACCAT 59.443 45.455 0.00 0.00 0.00 3.55
4658 4732 1.950909 CGCTTTCCCAAACTGTAACCA 59.049 47.619 0.00 0.00 0.00 3.67
4659 4733 1.951602 ACGCTTTCCCAAACTGTAACC 59.048 47.619 0.00 0.00 0.00 2.85
4660 4734 2.876550 AGACGCTTTCCCAAACTGTAAC 59.123 45.455 0.00 0.00 0.00 2.50
4661 4735 3.202829 AGACGCTTTCCCAAACTGTAA 57.797 42.857 0.00 0.00 0.00 2.41
4662 4736 2.922740 AGACGCTTTCCCAAACTGTA 57.077 45.000 0.00 0.00 0.00 2.74
4663 4737 2.104281 AGTAGACGCTTTCCCAAACTGT 59.896 45.455 0.00 0.00 0.00 3.55
4664 4738 2.737252 GAGTAGACGCTTTCCCAAACTG 59.263 50.000 0.00 0.00 0.00 3.16
4665 4739 2.289506 GGAGTAGACGCTTTCCCAAACT 60.290 50.000 0.00 0.00 0.00 2.66
4666 4740 2.074576 GGAGTAGACGCTTTCCCAAAC 58.925 52.381 0.00 0.00 0.00 2.93
4667 4741 1.002773 GGGAGTAGACGCTTTCCCAAA 59.997 52.381 16.79 0.00 46.96 3.28
4668 4742 0.611714 GGGAGTAGACGCTTTCCCAA 59.388 55.000 16.79 0.00 46.96 4.12
4669 4743 2.283824 GGGAGTAGACGCTTTCCCA 58.716 57.895 16.79 0.00 46.96 4.37
4671 4745 0.460722 GGAGGGAGTAGACGCTTTCC 59.539 60.000 0.00 0.00 33.36 3.13
4672 4746 0.100861 CGGAGGGAGTAGACGCTTTC 59.899 60.000 0.00 0.00 33.36 2.62
4673 4747 0.611340 ACGGAGGGAGTAGACGCTTT 60.611 55.000 0.00 0.00 33.36 3.51
4674 4748 1.001145 ACGGAGGGAGTAGACGCTT 60.001 57.895 0.00 0.00 33.36 4.68
4675 4749 1.451747 GACGGAGGGAGTAGACGCT 60.452 63.158 0.00 0.00 35.82 5.07
4676 4750 0.179062 TAGACGGAGGGAGTAGACGC 60.179 60.000 0.00 0.00 0.00 5.19
4677 4751 1.540797 CCTAGACGGAGGGAGTAGACG 60.541 61.905 0.00 0.00 32.39 4.18
4678 4752 1.490069 ACCTAGACGGAGGGAGTAGAC 59.510 57.143 5.42 0.00 41.36 2.59
4679 4753 1.489649 CACCTAGACGGAGGGAGTAGA 59.510 57.143 5.42 0.00 41.36 2.59
4680 4754 1.212441 ACACCTAGACGGAGGGAGTAG 59.788 57.143 5.42 0.00 41.36 2.57
4681 4755 1.064906 CACACCTAGACGGAGGGAGTA 60.065 57.143 5.42 0.00 41.36 2.59
4682 4756 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
4683 4757 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
4684 4758 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
4685 4759 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
4686 4760 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
4687 4761 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
4688 4762 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
4689 4763 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
4690 4764 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
4710 4784 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
4711 4785 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
4712 4786 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
4713 4787 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
4714 4788 6.480320 TGTGTTTTGGGATTATTTGGTTTTCG 59.520 34.615 0.00 0.00 0.00 3.46
4715 4789 7.793927 TGTGTTTTGGGATTATTTGGTTTTC 57.206 32.000 0.00 0.00 0.00 2.29
4716 4790 9.500785 CTATGTGTTTTGGGATTATTTGGTTTT 57.499 29.630 0.00 0.00 0.00 2.43
4717 4791 7.606073 GCTATGTGTTTTGGGATTATTTGGTTT 59.394 33.333 0.00 0.00 0.00 3.27
4718 4792 7.102993 GCTATGTGTTTTGGGATTATTTGGTT 58.897 34.615 0.00 0.00 0.00 3.67
4719 4793 6.627065 CGCTATGTGTTTTGGGATTATTTGGT 60.627 38.462 0.00 0.00 0.00 3.67
4720 4794 5.748152 CGCTATGTGTTTTGGGATTATTTGG 59.252 40.000 0.00 0.00 0.00 3.28
4721 4795 5.231991 GCGCTATGTGTTTTGGGATTATTTG 59.768 40.000 0.00 0.00 0.00 2.32
4722 4796 5.348164 GCGCTATGTGTTTTGGGATTATTT 58.652 37.500 0.00 0.00 0.00 1.40
4723 4797 4.497340 CGCGCTATGTGTTTTGGGATTATT 60.497 41.667 5.56 0.00 0.00 1.40
4724 4798 3.003275 CGCGCTATGTGTTTTGGGATTAT 59.997 43.478 5.56 0.00 0.00 1.28
4725 4799 2.353269 CGCGCTATGTGTTTTGGGATTA 59.647 45.455 5.56 0.00 0.00 1.75
4726 4800 1.132262 CGCGCTATGTGTTTTGGGATT 59.868 47.619 5.56 0.00 0.00 3.01
4727 4801 0.732571 CGCGCTATGTGTTTTGGGAT 59.267 50.000 5.56 0.00 0.00 3.85
4728 4802 1.302383 CCGCGCTATGTGTTTTGGGA 61.302 55.000 5.56 0.00 0.00 4.37
4729 4803 1.136565 CCGCGCTATGTGTTTTGGG 59.863 57.895 5.56 0.00 0.00 4.12
4730 4804 0.454285 CACCGCGCTATGTGTTTTGG 60.454 55.000 5.56 0.00 0.00 3.28
4731 4805 1.065031 GCACCGCGCTATGTGTTTTG 61.065 55.000 18.56 0.00 37.77 2.44
4732 4806 1.209127 GCACCGCGCTATGTGTTTT 59.791 52.632 18.56 0.00 37.77 2.43
4733 4807 1.305219 ATGCACCGCGCTATGTGTTT 61.305 50.000 18.56 7.60 43.06 2.83
4734 4808 1.305219 AATGCACCGCGCTATGTGTT 61.305 50.000 18.56 7.28 43.06 3.32
4735 4809 0.461163 TAATGCACCGCGCTATGTGT 60.461 50.000 18.56 6.11 43.06 3.72
4736 4810 0.655208 TTAATGCACCGCGCTATGTG 59.345 50.000 5.56 11.44 43.06 3.21
4737 4811 1.374560 TTTAATGCACCGCGCTATGT 58.625 45.000 5.56 0.00 43.06 2.29
4738 4812 2.686558 ATTTAATGCACCGCGCTATG 57.313 45.000 5.56 4.38 43.06 2.23
4739 4813 2.878406 AGAATTTAATGCACCGCGCTAT 59.122 40.909 5.56 0.00 43.06 2.97
4740 4814 2.285083 AGAATTTAATGCACCGCGCTA 58.715 42.857 5.56 0.00 43.06 4.26
4741 4815 1.094785 AGAATTTAATGCACCGCGCT 58.905 45.000 5.56 0.00 43.06 5.92
4742 4816 2.372350 GTAGAATTTAATGCACCGCGC 58.628 47.619 0.00 0.00 42.89 6.86
4743 4817 2.612212 AGGTAGAATTTAATGCACCGCG 59.388 45.455 0.00 0.00 0.00 6.46
4744 4818 3.303132 CGAGGTAGAATTTAATGCACCGC 60.303 47.826 0.00 0.00 0.00 5.68
4745 4819 3.869246 ACGAGGTAGAATTTAATGCACCG 59.131 43.478 0.00 0.00 0.00 4.94
4746 4820 5.813080 AACGAGGTAGAATTTAATGCACC 57.187 39.130 0.00 0.00 0.00 5.01
4747 4821 7.073342 AGAAACGAGGTAGAATTTAATGCAC 57.927 36.000 0.00 0.00 0.00 4.57
4748 4822 7.174253 ACAAGAAACGAGGTAGAATTTAATGCA 59.826 33.333 0.00 0.00 0.00 3.96
4749 4823 7.527457 ACAAGAAACGAGGTAGAATTTAATGC 58.473 34.615 0.00 0.00 0.00 3.56
4750 4824 9.893305 AAACAAGAAACGAGGTAGAATTTAATG 57.107 29.630 0.00 0.00 0.00 1.90
4752 4826 9.333724 AGAAACAAGAAACGAGGTAGAATTTAA 57.666 29.630 0.00 0.00 0.00 1.52
4753 4827 8.897872 AGAAACAAGAAACGAGGTAGAATTTA 57.102 30.769 0.00 0.00 0.00 1.40
4754 4828 7.803279 AGAAACAAGAAACGAGGTAGAATTT 57.197 32.000 0.00 0.00 0.00 1.82
4755 4829 7.497909 TCAAGAAACAAGAAACGAGGTAGAATT 59.502 33.333 0.00 0.00 0.00 2.17
4756 4830 6.990349 TCAAGAAACAAGAAACGAGGTAGAAT 59.010 34.615 0.00 0.00 0.00 2.40
4757 4831 6.257193 GTCAAGAAACAAGAAACGAGGTAGAA 59.743 38.462 0.00 0.00 0.00 2.10
4758 4832 5.751990 GTCAAGAAACAAGAAACGAGGTAGA 59.248 40.000 0.00 0.00 0.00 2.59
4759 4833 5.522460 TGTCAAGAAACAAGAAACGAGGTAG 59.478 40.000 0.00 0.00 0.00 3.18
4760 4834 5.421277 TGTCAAGAAACAAGAAACGAGGTA 58.579 37.500 0.00 0.00 0.00 3.08
4761 4835 4.258543 TGTCAAGAAACAAGAAACGAGGT 58.741 39.130 0.00 0.00 0.00 3.85
4762 4836 4.875544 TGTCAAGAAACAAGAAACGAGG 57.124 40.909 0.00 0.00 0.00 4.63
4763 4837 7.796838 TGATATGTCAAGAAACAAGAAACGAG 58.203 34.615 0.00 0.00 31.81 4.18
4764 4838 7.722795 TGATATGTCAAGAAACAAGAAACGA 57.277 32.000 0.00 0.00 31.81 3.85
4765 4839 7.323656 GGTTGATATGTCAAGAAACAAGAAACG 59.676 37.037 4.98 0.00 44.58 3.60
4766 4840 8.134895 TGGTTGATATGTCAAGAAACAAGAAAC 58.865 33.333 4.98 0.00 44.58 2.78
4767 4841 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
4768 4842 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
4769 4843 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
4772 4846 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
4773 4847 9.994432 CTCTTATTGGTTGATATGTCAAGAAAC 57.006 33.333 4.98 0.00 44.58 2.78
4774 4848 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
4776 4850 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
4777 4851 9.334947 ACATCTCTTATTGGTTGATATGTCAAG 57.665 33.333 4.98 0.00 44.58 3.02
4778 4852 9.112725 CACATCTCTTATTGGTTGATATGTCAA 57.887 33.333 0.03 0.03 41.89 3.18
4779 4853 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
4780 4854 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
4781 4855 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
4782 4856 6.432162 CCCCACATCTCTTATTGGTTGATATG 59.568 42.308 0.00 0.00 0.00 1.78
4783 4857 6.103205 ACCCCACATCTCTTATTGGTTGATAT 59.897 38.462 0.00 0.00 0.00 1.63
4784 4858 5.431731 ACCCCACATCTCTTATTGGTTGATA 59.568 40.000 0.00 0.00 0.00 2.15
4785 4859 4.230502 ACCCCACATCTCTTATTGGTTGAT 59.769 41.667 0.00 0.00 0.00 2.57
4786 4860 3.591527 ACCCCACATCTCTTATTGGTTGA 59.408 43.478 0.00 0.00 0.00 3.18
4787 4861 3.696051 CACCCCACATCTCTTATTGGTTG 59.304 47.826 0.00 0.00 0.00 3.77
4788 4862 3.333680 ACACCCCACATCTCTTATTGGTT 59.666 43.478 0.00 0.00 0.00 3.67
4789 4863 2.919602 ACACCCCACATCTCTTATTGGT 59.080 45.455 0.00 0.00 0.00 3.67
4790 4864 3.282021 CACACCCCACATCTCTTATTGG 58.718 50.000 0.00 0.00 0.00 3.16
4791 4865 2.684881 GCACACCCCACATCTCTTATTG 59.315 50.000 0.00 0.00 0.00 1.90
4792 4866 2.308570 TGCACACCCCACATCTCTTATT 59.691 45.455 0.00 0.00 0.00 1.40
4793 4867 1.915489 TGCACACCCCACATCTCTTAT 59.085 47.619 0.00 0.00 0.00 1.73
4794 4868 1.357137 TGCACACCCCACATCTCTTA 58.643 50.000 0.00 0.00 0.00 2.10
4795 4869 0.700564 ATGCACACCCCACATCTCTT 59.299 50.000 0.00 0.00 0.00 2.85
4796 4870 0.034767 CATGCACACCCCACATCTCT 60.035 55.000 0.00 0.00 0.00 3.10
4797 4871 0.322816 ACATGCACACCCCACATCTC 60.323 55.000 0.00 0.00 0.00 2.75
4798 4872 0.112995 AACATGCACACCCCACATCT 59.887 50.000 0.00 0.00 0.00 2.90
4799 4873 0.968405 AAACATGCACACCCCACATC 59.032 50.000 0.00 0.00 0.00 3.06
4800 4874 3.146218 AAACATGCACACCCCACAT 57.854 47.368 0.00 0.00 0.00 3.21
4801 4875 4.695014 AAACATGCACACCCCACA 57.305 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.