Multiple sequence alignment - TraesCS3B01G112100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G112100 chr3B 100.000 3939 0 0 1 3939 78395943 78399881 0.000000e+00 7275.0
1 TraesCS3B01G112100 chr3B 80.268 299 34 10 2959 3233 78521087 78521384 6.670000e-48 202.0
2 TraesCS3B01G112100 chr3D 92.992 1955 125 8 1469 3414 48865968 48867919 0.000000e+00 2841.0
3 TraesCS3B01G112100 chr3D 88.955 1503 86 29 1 1458 48864369 48865836 0.000000e+00 1783.0
4 TraesCS3B01G112100 chr3A 91.560 1955 154 6 1454 3405 61347732 61349678 0.000000e+00 2686.0
5 TraesCS3B01G112100 chr3A 86.910 1398 114 33 1 1362 61346192 61347556 0.000000e+00 1504.0
6 TraesCS3B01G112100 chr3A 84.373 1299 160 18 1965 3233 61434812 61436097 0.000000e+00 1234.0
7 TraesCS3B01G112100 chr3A 90.096 313 30 1 3398 3710 61351217 61351528 4.740000e-109 405.0
8 TraesCS3B01G112100 chr3A 97.561 41 1 0 3898 3938 501882379 501882419 1.960000e-08 71.3
9 TraesCS3B01G112100 chr7B 97.778 45 1 0 3893 3937 716308738 716308782 1.170000e-10 78.7
10 TraesCS3B01G112100 chr7B 95.455 44 1 1 3895 3937 72291178 72291135 7.060000e-08 69.4
11 TraesCS3B01G112100 chr5D 97.561 41 1 0 3897 3937 429977842 429977882 1.960000e-08 71.3
12 TraesCS3B01G112100 chr5D 93.478 46 1 2 3893 3937 436422392 436422436 2.540000e-07 67.6
13 TraesCS3B01G112100 chr6A 95.455 44 1 1 3895 3937 574159532 574159575 7.060000e-08 69.4
14 TraesCS3B01G112100 chr4A 95.455 44 1 1 3889 3932 733665870 733665912 7.060000e-08 69.4
15 TraesCS3B01G112100 chr2D 93.478 46 2 1 3888 3932 523155086 523155041 2.540000e-07 67.6
16 TraesCS3B01G112100 chr2A 91.667 48 3 1 3889 3936 761644016 761643970 9.140000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G112100 chr3B 78395943 78399881 3938 False 7275.000000 7275 100.0000 1 3939 1 chr3B.!!$F1 3938
1 TraesCS3B01G112100 chr3D 48864369 48867919 3550 False 2312.000000 2841 90.9735 1 3414 2 chr3D.!!$F1 3413
2 TraesCS3B01G112100 chr3A 61346192 61351528 5336 False 1531.666667 2686 89.5220 1 3710 3 chr3A.!!$F3 3709
3 TraesCS3B01G112100 chr3A 61434812 61436097 1285 False 1234.000000 1234 84.3730 1965 3233 1 chr3A.!!$F1 1268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 337 0.179051 GAGAGATGGCTGCTCCCAAG 60.179 60.0 0.00 0.00 38.61 3.61 F
1798 1992 0.394565 ATTATCAGAGGCGCCCAGTC 59.605 55.0 26.15 15.21 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2367 0.810648 GGTTTGCCGCATTGAGATCA 59.189 50.0 0.0 0.0 0.0 2.92 R
3746 5520 0.036010 CATCCTCTCACACCGGCTTT 60.036 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.876156 CCGAGCATAAATCTTCCAGCC 59.124 52.381 0.00 0.00 0.00 4.85
57 58 3.549794 GAGCATAAATCTTCCAGCCACT 58.450 45.455 0.00 0.00 0.00 4.00
69 70 2.116125 GCCACTTGTTCCTGGCCT 59.884 61.111 3.32 0.00 46.38 5.19
124 125 4.256920 GTGTAGTGCTCAGATTTGGTCAT 58.743 43.478 0.00 0.00 0.00 3.06
132 133 4.497674 GCTCAGATTTGGTCATCATGAAGC 60.498 45.833 0.00 0.00 0.00 3.86
195 196 1.258445 GCGTCTCTGAAGGGGGAGAA 61.258 60.000 0.00 0.00 39.81 2.87
275 300 1.888512 TCCAGTTTCTTCAAGCCATGC 59.111 47.619 0.00 0.00 0.00 4.06
301 327 1.339438 TGCTGTTTCTGGAGAGATGGC 60.339 52.381 0.00 0.00 0.00 4.40
309 335 2.068821 GGAGAGATGGCTGCTCCCA 61.069 63.158 0.00 0.00 41.84 4.37
310 336 1.630126 GGAGAGATGGCTGCTCCCAA 61.630 60.000 0.00 0.00 41.84 4.12
311 337 0.179051 GAGAGATGGCTGCTCCCAAG 60.179 60.000 0.00 0.00 38.61 3.61
312 338 0.913451 AGAGATGGCTGCTCCCAAGT 60.913 55.000 0.00 0.00 38.61 3.16
313 339 0.463474 GAGATGGCTGCTCCCAAGTC 60.463 60.000 0.00 0.00 38.61 3.01
314 340 1.452833 GATGGCTGCTCCCAAGTCC 60.453 63.158 0.00 0.00 38.61 3.85
315 341 2.900671 GATGGCTGCTCCCAAGTCCC 62.901 65.000 0.00 0.00 38.61 4.46
316 342 3.650950 GGCTGCTCCCAAGTCCCA 61.651 66.667 0.00 0.00 0.00 4.37
317 343 2.436109 GCTGCTCCCAAGTCCCAA 59.564 61.111 0.00 0.00 0.00 4.12
318 344 1.973812 GCTGCTCCCAAGTCCCAAC 60.974 63.158 0.00 0.00 0.00 3.77
319 345 1.303643 CTGCTCCCAAGTCCCAACC 60.304 63.158 0.00 0.00 0.00 3.77
320 346 2.067932 CTGCTCCCAAGTCCCAACCA 62.068 60.000 0.00 0.00 0.00 3.67
332 358 2.827921 GTCCCAACCAAAGATCTTGCAT 59.172 45.455 9.17 0.00 0.00 3.96
349 375 1.303309 CATCGTTTCTCCAGGGATGC 58.697 55.000 0.00 0.00 0.00 3.91
351 377 1.860641 TCGTTTCTCCAGGGATGCTA 58.139 50.000 0.00 0.00 0.00 3.49
367 393 7.881751 CAGGGATGCTATTATCTTTTGATCTGA 59.118 37.037 0.00 0.00 40.19 3.27
381 407 9.060347 TCTTTTGATCTGATCTTGGTTATATGC 57.940 33.333 17.82 0.00 0.00 3.14
395 421 1.864669 ATATGCCCACCCCTGTTTTG 58.135 50.000 0.00 0.00 0.00 2.44
396 422 0.780637 TATGCCCACCCCTGTTTTGA 59.219 50.000 0.00 0.00 0.00 2.69
415 463 4.274602 TGACCCACACGCTTATTTCTTA 57.725 40.909 0.00 0.00 0.00 2.10
456 504 0.455005 GCCTGCTGAATCCTTGCTTC 59.545 55.000 0.00 0.00 0.00 3.86
498 548 6.126854 GGGTTATCCTTGATACCACAGTAAGT 60.127 42.308 0.00 0.00 30.59 2.24
526 576 2.658285 CTGCTCATGTCTTGTTGTTGC 58.342 47.619 0.00 0.00 0.00 4.17
531 581 3.967401 TCATGTCTTGTTGTTGCACATG 58.033 40.909 4.32 4.32 43.79 3.21
551 601 7.227314 GCACATGTAACTCAATCTGATCCATTA 59.773 37.037 0.00 0.00 0.00 1.90
560 610 6.301486 TCAATCTGATCCATTAACCTGATGG 58.699 40.000 0.00 0.00 44.39 3.51
588 638 5.883661 ACCAGATATGCAATTTCTTGTTCG 58.116 37.500 0.00 0.00 32.04 3.95
640 690 8.506168 TTTAAGCATTTATTTCTCGAGGACAT 57.494 30.769 13.56 4.94 0.00 3.06
673 735 3.064545 ACACGAATGTACTACTAGACGCC 59.935 47.826 0.00 0.00 37.26 5.68
749 814 1.378250 GAATGAGTGGCTGCTGGCT 60.378 57.895 17.87 0.00 41.46 4.75
783 848 7.984422 TTCACATGCTTATCCATACCTATTG 57.016 36.000 0.00 0.00 0.00 1.90
829 894 5.690409 CGGTATAGTGTATTCATTTCGCAGT 59.310 40.000 0.00 0.00 0.00 4.40
902 970 9.631452 CTCCTTATTTTTCTTCCTTGATTGAAC 57.369 33.333 0.00 0.00 0.00 3.18
907 975 7.518731 TTTTTCTTCCTTGATTGAACAAACG 57.481 32.000 0.00 0.00 0.00 3.60
908 976 4.223320 TCTTCCTTGATTGAACAAACGC 57.777 40.909 0.00 0.00 0.00 4.84
974 1042 4.457257 AGTGCTTGAATCTGCTAAACTTCC 59.543 41.667 0.00 0.00 0.00 3.46
977 1045 4.697352 GCTTGAATCTGCTAAACTTCCAGA 59.303 41.667 0.00 0.00 39.65 3.86
981 1049 6.715280 TGAATCTGCTAAACTTCCAGATCTT 58.285 36.000 0.00 0.00 43.45 2.40
990 1058 7.148490 GCTAAACTTCCAGATCTTCTTGAAGAC 60.148 40.741 19.45 9.21 44.48 3.01
1247 1318 8.749499 GCACTGAAATGAGCATAAATGAATAAC 58.251 33.333 0.00 0.00 0.00 1.89
1292 1363 9.477484 CAAGTCTACAACACACTACTTTCTTAT 57.523 33.333 0.00 0.00 0.00 1.73
1319 1390 8.800370 TTTCAGGTGCTTTTGATGTACATATA 57.200 30.769 8.71 0.00 0.00 0.86
1325 1396 7.798516 GGTGCTTTTGATGTACATATATTGTCG 59.201 37.037 8.71 0.00 39.87 4.35
1376 1447 5.831525 TCGTGGAGCTAATGACTAGGAATTA 59.168 40.000 0.00 0.00 0.00 1.40
1395 1466 7.394359 AGGAATTAGCAGCTGAGTAAATGAAAA 59.606 33.333 20.43 0.00 0.00 2.29
1458 1529 1.071699 GGTGTGGTAGCCTTCTGTGAA 59.928 52.381 0.00 0.00 0.00 3.18
1459 1530 2.486548 GGTGTGGTAGCCTTCTGTGAAA 60.487 50.000 0.00 0.00 0.00 2.69
1460 1531 3.412386 GTGTGGTAGCCTTCTGTGAAAT 58.588 45.455 0.00 0.00 0.00 2.17
1497 1689 9.383519 TGATGATACTTTCCTTGACAATTACTC 57.616 33.333 0.00 0.00 0.00 2.59
1629 1821 4.935205 GTGTTGTCCATGCTACTGTTATCA 59.065 41.667 0.00 0.00 0.00 2.15
1630 1822 5.411361 GTGTTGTCCATGCTACTGTTATCAA 59.589 40.000 0.00 0.00 0.00 2.57
1798 1992 0.394565 ATTATCAGAGGCGCCCAGTC 59.605 55.000 26.15 15.21 0.00 3.51
1975 2169 1.222936 CACACCATCTCCTGAGCCC 59.777 63.158 0.00 0.00 0.00 5.19
2021 2215 2.577059 CTAGAGCCGCCGGTTTCA 59.423 61.111 4.45 0.00 0.00 2.69
2076 2270 0.911525 TCCTCAAGGAAGGAGCCTGG 60.912 60.000 0.00 0.00 40.60 4.45
2098 2292 3.306641 GGTCAGCTTCACAGTCAGAATCT 60.307 47.826 0.00 0.00 0.00 2.40
2135 2329 3.654321 AGATGGTGAGGATGATGGCATTA 59.346 43.478 0.00 0.00 34.11 1.90
2185 2379 2.326664 CTCGAGGATGATCTCAATGCG 58.673 52.381 3.91 0.00 33.59 4.73
2188 2382 0.471191 AGGATGATCTCAATGCGGCA 59.529 50.000 4.58 4.58 0.00 5.69
2206 2400 0.040067 CAAACCGGAAGCTGCTTGAC 60.040 55.000 21.25 11.35 0.00 3.18
2304 2498 4.611355 CGCCGATCATGCTACCAAAATTAG 60.611 45.833 0.00 0.00 0.00 1.73
2325 2519 3.766591 AGAGACATTGATGGAGAGTTCGT 59.233 43.478 0.00 0.00 0.00 3.85
2370 2564 5.034852 TCTTCACAAGTGGAGATCAACAA 57.965 39.130 7.11 0.00 40.16 2.83
2374 2568 5.624159 TCACAAGTGGAGATCAACAATCTT 58.376 37.500 0.00 0.00 45.06 2.40
2395 2589 1.536943 AAAGGAGGCTCGAAGACGCT 61.537 55.000 8.69 0.00 39.58 5.07
2419 2613 4.791974 CAATTTTGTCAGAAGAGCACTCC 58.208 43.478 0.00 0.00 0.00 3.85
2461 2655 2.229784 GGGACTGGAAGCTGAAATTGTG 59.770 50.000 0.00 0.00 37.60 3.33
2476 2670 5.994054 TGAAATTGTGAGTCTGAAGGAAGAG 59.006 40.000 0.00 0.00 0.00 2.85
2480 2674 4.411013 TGTGAGTCTGAAGGAAGAGATGA 58.589 43.478 0.00 0.00 0.00 2.92
2488 2682 3.837146 TGAAGGAAGAGATGACTTCAGCT 59.163 43.478 0.00 0.00 46.40 4.24
2501 2695 0.315886 TTCAGCTAGACGGCGTTTCA 59.684 50.000 16.19 1.00 37.29 2.69
2521 2715 5.068234 TCAACGACAAAATATCCGAGAGT 57.932 39.130 0.00 0.00 0.00 3.24
2537 2731 0.599728 GAGTGATGCCGAGATCAGCC 60.600 60.000 0.00 0.00 32.92 4.85
2576 2770 4.421479 CCGCGTCCGAGAAGCTGT 62.421 66.667 4.92 0.00 35.07 4.40
2599 2793 0.398318 AGGAGAAGTCCACCAACAGC 59.602 55.000 0.00 0.00 46.80 4.40
2600 2794 0.108585 GGAGAAGTCCACCAACAGCA 59.891 55.000 0.00 0.00 43.31 4.41
2611 2805 0.976641 CCAACAGCACAGAGGTAGGA 59.023 55.000 0.00 0.00 0.00 2.94
2623 2817 2.639839 AGAGGTAGGAAAGCTGCAAGAA 59.360 45.455 1.02 0.00 35.60 2.52
2625 2819 4.013050 GAGGTAGGAAAGCTGCAAGAAAT 58.987 43.478 1.02 0.00 35.60 2.17
2628 2822 4.218417 GGTAGGAAAGCTGCAAGAAATGAA 59.782 41.667 1.02 0.00 34.07 2.57
2643 2837 1.573108 ATGAACCGGATCACCAGTCT 58.427 50.000 17.55 0.00 35.59 3.24
2645 2839 0.895530 GAACCGGATCACCAGTCTCA 59.104 55.000 9.46 0.00 35.59 3.27
2920 3114 2.574399 GAGCGAGGAAGGAGCGTT 59.426 61.111 0.00 0.00 35.78 4.84
2951 3145 1.404583 CGGAATAACCCGGTTTCGTCT 60.405 52.381 8.44 0.00 45.43 4.18
3028 3222 5.628797 TTGGCCTGAGATGTAACATCATA 57.371 39.130 3.32 0.00 0.00 2.15
3030 3224 3.990469 GGCCTGAGATGTAACATCATACG 59.010 47.826 0.00 0.00 0.00 3.06
3031 3225 3.990469 GCCTGAGATGTAACATCATACGG 59.010 47.826 0.00 0.00 0.00 4.02
3037 3231 6.127451 TGAGATGTAACATCATACGGAACTGT 60.127 38.462 0.00 0.00 0.00 3.55
3060 3254 1.144057 CCCTACCGTGGACATCAGC 59.856 63.158 0.00 0.00 0.00 4.26
3061 3255 1.330655 CCCTACCGTGGACATCAGCT 61.331 60.000 0.00 0.00 0.00 4.24
3064 3258 2.615493 CCTACCGTGGACATCAGCTTTT 60.615 50.000 0.00 0.00 0.00 2.27
3083 3285 8.929746 CAGCTTTTCCTTTTCTTGGATTATTTC 58.070 33.333 0.00 0.00 33.09 2.17
3166 3387 6.916360 TTCCTTTGGCAATAAAATGTCTCT 57.084 33.333 0.00 0.00 0.00 3.10
3173 3394 5.066893 TGGCAATAAAATGTCTCTGATGAGC 59.933 40.000 0.00 0.00 40.03 4.26
3174 3395 5.298777 GGCAATAAAATGTCTCTGATGAGCT 59.701 40.000 0.00 0.00 40.03 4.09
3248 3476 0.877649 AGTGGCTCGATATTGCAGCG 60.878 55.000 0.00 0.00 37.40 5.18
3267 3495 2.478539 GCGAGAATCAAACCATTCCTGC 60.479 50.000 0.00 0.00 33.79 4.85
3280 3508 1.573607 TTCCTGCAGGCATCATCCCA 61.574 55.000 28.91 4.13 34.44 4.37
3341 3570 1.602605 GGCGCCCCAACTTACAACT 60.603 57.895 18.11 0.00 0.00 3.16
3381 3610 2.286872 CCACATTCATCAGTGAGCTCC 58.713 52.381 12.15 2.40 37.97 4.70
3444 5218 3.059325 CGCAAGTGAAAAAGACAGAGGAG 60.059 47.826 0.00 0.00 0.00 3.69
3455 5229 6.441088 AAAGACAGAGGAGTTGGTTTCTAT 57.559 37.500 0.00 0.00 0.00 1.98
3457 5231 5.337788 AGACAGAGGAGTTGGTTTCTATCT 58.662 41.667 0.00 0.00 0.00 1.98
3480 5254 8.263940 TCTATGCACAAGTATAAAGGAAACAC 57.736 34.615 0.00 0.00 0.00 3.32
3518 5292 5.114785 TGGTCGTTGACATAAAACAATGG 57.885 39.130 0.00 0.00 34.85 3.16
3522 5296 6.143278 GGTCGTTGACATAAAACAATGGAAAC 59.857 38.462 0.00 0.00 34.85 2.78
3524 5298 6.915300 TCGTTGACATAAAACAATGGAAACTG 59.085 34.615 0.00 0.00 34.85 3.16
3539 5313 4.642885 TGGAAACTGTACTTGGAAAACTGG 59.357 41.667 0.00 0.00 0.00 4.00
3570 5344 6.423776 TGATCATATAGAAGACATGCACCA 57.576 37.500 0.00 0.00 0.00 4.17
3571 5345 6.226052 TGATCATATAGAAGACATGCACCAC 58.774 40.000 0.00 0.00 0.00 4.16
3572 5346 5.612725 TCATATAGAAGACATGCACCACA 57.387 39.130 0.00 0.00 0.00 4.17
3664 5438 3.260740 CAGGCAGATCAGAGTGACTTTC 58.739 50.000 0.00 0.00 25.28 2.62
3667 5441 4.067896 GGCAGATCAGAGTGACTTTCAAA 58.932 43.478 0.00 0.00 0.00 2.69
3677 5451 7.277981 TCAGAGTGACTTTCAAACAACTTACTC 59.722 37.037 0.00 0.00 0.00 2.59
3687 5461 5.526111 TCAAACAACTTACTCCTACAACTGC 59.474 40.000 0.00 0.00 0.00 4.40
3710 5484 0.751643 GTCACACAACAGGCCTGGTT 60.752 55.000 35.42 23.25 34.19 3.67
3711 5485 0.033601 TCACACAACAGGCCTGGTTT 60.034 50.000 35.42 21.76 34.19 3.27
3712 5486 1.213182 TCACACAACAGGCCTGGTTTA 59.787 47.619 35.42 10.31 34.19 2.01
3713 5487 1.336755 CACACAACAGGCCTGGTTTAC 59.663 52.381 35.42 0.00 34.19 2.01
3714 5488 1.064314 ACACAACAGGCCTGGTTTACA 60.064 47.619 35.42 0.00 34.19 2.41
3716 5490 0.598065 CAACAGGCCTGGTTTACAGC 59.402 55.000 35.42 0.00 46.14 4.40
3717 5491 0.184933 AACAGGCCTGGTTTACAGCA 59.815 50.000 35.42 0.00 46.14 4.41
3718 5492 0.537371 ACAGGCCTGGTTTACAGCAC 60.537 55.000 35.42 0.00 46.14 4.40
3719 5493 0.537143 CAGGCCTGGTTTACAGCACA 60.537 55.000 26.14 0.00 46.14 4.57
3720 5494 0.184933 AGGCCTGGTTTACAGCACAA 59.815 50.000 3.11 0.00 46.14 3.33
3721 5495 0.598065 GGCCTGGTTTACAGCACAAG 59.402 55.000 0.00 0.00 46.14 3.16
3722 5496 1.318576 GCCTGGTTTACAGCACAAGT 58.681 50.000 0.00 0.00 46.14 3.16
3723 5497 1.681264 GCCTGGTTTACAGCACAAGTT 59.319 47.619 0.00 0.00 46.14 2.66
3724 5498 2.100749 GCCTGGTTTACAGCACAAGTTT 59.899 45.455 0.00 0.00 46.14 2.66
3725 5499 3.316868 GCCTGGTTTACAGCACAAGTTTA 59.683 43.478 0.00 0.00 46.14 2.01
3726 5500 4.556699 GCCTGGTTTACAGCACAAGTTTAG 60.557 45.833 0.00 0.00 46.14 1.85
3727 5501 4.578928 CCTGGTTTACAGCACAAGTTTAGT 59.421 41.667 0.00 0.00 46.14 2.24
3728 5502 5.067283 CCTGGTTTACAGCACAAGTTTAGTT 59.933 40.000 0.00 0.00 46.14 2.24
3729 5503 6.126568 TGGTTTACAGCACAAGTTTAGTTC 57.873 37.500 0.00 0.00 0.00 3.01
3730 5504 5.883673 TGGTTTACAGCACAAGTTTAGTTCT 59.116 36.000 0.00 0.00 0.00 3.01
3731 5505 6.037830 TGGTTTACAGCACAAGTTTAGTTCTC 59.962 38.462 0.00 0.00 0.00 2.87
3732 5506 6.427974 GTTTACAGCACAAGTTTAGTTCTCC 58.572 40.000 0.00 0.00 0.00 3.71
3733 5507 4.150897 ACAGCACAAGTTTAGTTCTCCA 57.849 40.909 0.00 0.00 0.00 3.86
3734 5508 4.523083 ACAGCACAAGTTTAGTTCTCCAA 58.477 39.130 0.00 0.00 0.00 3.53
3735 5509 4.335594 ACAGCACAAGTTTAGTTCTCCAAC 59.664 41.667 0.00 0.00 0.00 3.77
3736 5510 4.576463 CAGCACAAGTTTAGTTCTCCAACT 59.424 41.667 0.00 0.00 45.39 3.16
3737 5511 5.758296 CAGCACAAGTTTAGTTCTCCAACTA 59.242 40.000 0.00 0.00 41.39 2.24
3746 5520 4.884668 AGTTCTCCAACTAATGTTCGGA 57.115 40.909 0.00 0.00 41.39 4.55
3747 5521 5.223449 AGTTCTCCAACTAATGTTCGGAA 57.777 39.130 0.00 0.00 41.39 4.30
3748 5522 5.617252 AGTTCTCCAACTAATGTTCGGAAA 58.383 37.500 0.00 0.00 41.39 3.13
3749 5523 5.701290 AGTTCTCCAACTAATGTTCGGAAAG 59.299 40.000 0.00 0.00 41.39 2.62
3750 5524 4.000988 TCTCCAACTAATGTTCGGAAAGC 58.999 43.478 0.00 0.00 33.52 3.51
3751 5525 3.078837 TCCAACTAATGTTCGGAAAGCC 58.921 45.455 0.00 0.00 33.52 4.35
3761 5535 4.285851 GGAAAGCCGGTGTGAGAG 57.714 61.111 1.90 0.00 0.00 3.20
3762 5536 1.376037 GGAAAGCCGGTGTGAGAGG 60.376 63.158 1.90 0.00 0.00 3.69
3763 5537 1.671742 GAAAGCCGGTGTGAGAGGA 59.328 57.895 1.90 0.00 0.00 3.71
3764 5538 0.250513 GAAAGCCGGTGTGAGAGGAT 59.749 55.000 1.90 0.00 0.00 3.24
3765 5539 0.036010 AAAGCCGGTGTGAGAGGATG 60.036 55.000 1.90 0.00 0.00 3.51
3766 5540 1.903877 AAGCCGGTGTGAGAGGATGG 61.904 60.000 1.90 0.00 0.00 3.51
3767 5541 2.359169 GCCGGTGTGAGAGGATGGA 61.359 63.158 1.90 0.00 0.00 3.41
3768 5542 1.899437 GCCGGTGTGAGAGGATGGAA 61.899 60.000 1.90 0.00 0.00 3.53
3769 5543 0.833287 CCGGTGTGAGAGGATGGAAT 59.167 55.000 0.00 0.00 0.00 3.01
3770 5544 1.473965 CCGGTGTGAGAGGATGGAATG 60.474 57.143 0.00 0.00 0.00 2.67
3771 5545 1.473965 CGGTGTGAGAGGATGGAATGG 60.474 57.143 0.00 0.00 0.00 3.16
3772 5546 1.839994 GGTGTGAGAGGATGGAATGGA 59.160 52.381 0.00 0.00 0.00 3.41
3773 5547 2.239654 GGTGTGAGAGGATGGAATGGAA 59.760 50.000 0.00 0.00 0.00 3.53
3774 5548 3.539604 GTGTGAGAGGATGGAATGGAAG 58.460 50.000 0.00 0.00 0.00 3.46
3775 5549 2.092753 TGTGAGAGGATGGAATGGAAGC 60.093 50.000 0.00 0.00 0.00 3.86
3776 5550 2.092753 GTGAGAGGATGGAATGGAAGCA 60.093 50.000 0.00 0.00 0.00 3.91
3777 5551 2.092753 TGAGAGGATGGAATGGAAGCAC 60.093 50.000 0.00 0.00 0.00 4.40
3778 5552 1.213926 AGAGGATGGAATGGAAGCACC 59.786 52.381 0.00 0.00 39.54 5.01
3790 5564 4.799564 TGGAAGCACCAAAATGTATTCC 57.200 40.909 0.11 0.00 46.75 3.01
3791 5565 4.415596 TGGAAGCACCAAAATGTATTCCT 58.584 39.130 0.11 0.00 46.75 3.36
3792 5566 5.575157 TGGAAGCACCAAAATGTATTCCTA 58.425 37.500 0.11 0.00 46.75 2.94
3793 5567 5.652014 TGGAAGCACCAAAATGTATTCCTAG 59.348 40.000 0.11 0.00 46.75 3.02
3794 5568 5.450550 GGAAGCACCAAAATGTATTCCTAGC 60.451 44.000 0.00 0.00 35.94 3.42
3795 5569 3.954258 AGCACCAAAATGTATTCCTAGCC 59.046 43.478 0.00 0.00 0.00 3.93
3796 5570 3.954258 GCACCAAAATGTATTCCTAGCCT 59.046 43.478 0.00 0.00 0.00 4.58
3797 5571 4.402474 GCACCAAAATGTATTCCTAGCCTT 59.598 41.667 0.00 0.00 0.00 4.35
3798 5572 5.105351 GCACCAAAATGTATTCCTAGCCTTT 60.105 40.000 0.00 0.00 0.00 3.11
3799 5573 6.574269 GCACCAAAATGTATTCCTAGCCTTTT 60.574 38.462 0.00 0.00 0.00 2.27
3800 5574 7.035612 CACCAAAATGTATTCCTAGCCTTTTC 58.964 38.462 0.00 0.00 0.00 2.29
3801 5575 6.723977 ACCAAAATGTATTCCTAGCCTTTTCA 59.276 34.615 0.00 0.00 0.00 2.69
3802 5576 7.093771 ACCAAAATGTATTCCTAGCCTTTTCAG 60.094 37.037 0.00 0.00 0.00 3.02
3803 5577 7.260603 CAAAATGTATTCCTAGCCTTTTCAGG 58.739 38.462 0.00 0.00 44.28 3.86
3804 5578 5.717119 ATGTATTCCTAGCCTTTTCAGGT 57.283 39.130 0.00 0.00 43.18 4.00
3805 5579 5.514500 TGTATTCCTAGCCTTTTCAGGTT 57.486 39.130 0.00 0.00 43.18 3.50
3806 5580 5.253330 TGTATTCCTAGCCTTTTCAGGTTG 58.747 41.667 0.00 0.00 43.18 3.77
3807 5581 2.200373 TCCTAGCCTTTTCAGGTTGC 57.800 50.000 0.00 0.00 43.18 4.17
3808 5582 1.423541 TCCTAGCCTTTTCAGGTTGCA 59.576 47.619 0.00 0.00 43.18 4.08
3809 5583 1.815003 CCTAGCCTTTTCAGGTTGCAG 59.185 52.381 0.00 0.00 43.18 4.41
3810 5584 2.508526 CTAGCCTTTTCAGGTTGCAGT 58.491 47.619 0.00 0.00 43.18 4.40
3811 5585 2.656947 AGCCTTTTCAGGTTGCAGTA 57.343 45.000 0.00 0.00 43.18 2.74
3812 5586 2.230660 AGCCTTTTCAGGTTGCAGTAC 58.769 47.619 0.00 0.00 43.18 2.73
3813 5587 1.269723 GCCTTTTCAGGTTGCAGTACC 59.730 52.381 0.00 0.00 43.18 3.34
3814 5588 2.582052 CCTTTTCAGGTTGCAGTACCA 58.418 47.619 10.18 0.00 40.82 3.25
3815 5589 2.554032 CCTTTTCAGGTTGCAGTACCAG 59.446 50.000 10.18 2.06 40.82 4.00
3816 5590 3.214328 CTTTTCAGGTTGCAGTACCAGT 58.786 45.455 10.18 0.00 40.82 4.00
3817 5591 4.385825 CTTTTCAGGTTGCAGTACCAGTA 58.614 43.478 10.18 0.00 40.82 2.74
3818 5592 3.678056 TTCAGGTTGCAGTACCAGTAG 57.322 47.619 10.18 0.00 40.82 2.57
3819 5593 2.884320 TCAGGTTGCAGTACCAGTAGA 58.116 47.619 10.18 0.17 40.82 2.59
3820 5594 3.236047 TCAGGTTGCAGTACCAGTAGAA 58.764 45.455 10.18 0.00 40.82 2.10
3821 5595 3.006537 TCAGGTTGCAGTACCAGTAGAAC 59.993 47.826 10.18 0.00 40.82 3.01
3822 5596 2.969950 AGGTTGCAGTACCAGTAGAACA 59.030 45.455 10.18 0.00 40.82 3.18
3823 5597 3.064931 GGTTGCAGTACCAGTAGAACAC 58.935 50.000 2.53 0.00 38.12 3.32
3824 5598 3.244112 GGTTGCAGTACCAGTAGAACACT 60.244 47.826 2.53 0.00 38.12 3.55
3825 5599 4.021719 GGTTGCAGTACCAGTAGAACACTA 60.022 45.833 2.53 0.00 38.12 2.74
3826 5600 4.778534 TGCAGTACCAGTAGAACACTAC 57.221 45.455 0.00 0.00 34.98 2.73
3827 5601 4.146564 TGCAGTACCAGTAGAACACTACA 58.853 43.478 9.51 0.00 38.96 2.74
3828 5602 4.585581 TGCAGTACCAGTAGAACACTACAA 59.414 41.667 9.51 0.00 38.96 2.41
3829 5603 4.922103 GCAGTACCAGTAGAACACTACAAC 59.078 45.833 9.51 3.40 38.96 3.32
3830 5604 5.278858 GCAGTACCAGTAGAACACTACAACT 60.279 44.000 9.51 5.14 38.96 3.16
3831 5605 6.380190 CAGTACCAGTAGAACACTACAACTC 58.620 44.000 9.51 0.00 38.96 3.01
3832 5606 4.500603 ACCAGTAGAACACTACAACTCG 57.499 45.455 9.51 0.00 38.96 4.18
3833 5607 3.255149 ACCAGTAGAACACTACAACTCGG 59.745 47.826 9.51 4.93 38.96 4.63
3834 5608 3.504906 CCAGTAGAACACTACAACTCGGA 59.495 47.826 9.51 0.00 38.96 4.55
3835 5609 4.022589 CCAGTAGAACACTACAACTCGGAA 60.023 45.833 9.51 0.00 38.96 4.30
3836 5610 4.916249 CAGTAGAACACTACAACTCGGAAC 59.084 45.833 9.51 0.00 38.96 3.62
3837 5611 3.910767 GTAGAACACTACAACTCGGAACG 59.089 47.826 0.00 0.00 43.57 3.95
3838 5612 4.319766 GTAGAACACTACAACTCGGAACGA 60.320 45.833 0.00 0.00 45.87 3.85
3839 5613 5.787337 GTAGAACACTACAACTCGGAACGAA 60.787 44.000 0.00 0.00 46.50 3.85
3841 5615 7.835244 GTAGAACACTACAACTCGGAACGAATA 60.835 40.741 0.00 0.00 41.93 1.75
3857 5631 7.515643 GGAACGAATAAATATAACCATGTCGG 58.484 38.462 0.00 0.00 42.50 4.79
3858 5632 7.385752 GGAACGAATAAATATAACCATGTCGGA 59.614 37.037 0.00 0.00 38.63 4.55
3859 5633 8.842358 AACGAATAAATATAACCATGTCGGAT 57.158 30.769 0.00 0.00 38.63 4.18
3860 5634 8.251750 ACGAATAAATATAACCATGTCGGATG 57.748 34.615 0.00 0.00 38.63 3.51
3861 5635 7.148474 ACGAATAAATATAACCATGTCGGATGC 60.148 37.037 0.00 0.00 38.63 3.91
3862 5636 7.064609 CGAATAAATATAACCATGTCGGATGCT 59.935 37.037 0.00 0.00 38.63 3.79
3863 5637 7.849804 ATAAATATAACCATGTCGGATGCTC 57.150 36.000 0.00 0.00 38.63 4.26
3864 5638 2.154854 ATAACCATGTCGGATGCTCG 57.845 50.000 0.00 0.00 38.63 5.03
3865 5639 0.529773 TAACCATGTCGGATGCTCGC 60.530 55.000 0.00 0.00 38.63 5.03
3866 5640 2.107750 CCATGTCGGATGCTCGCT 59.892 61.111 0.00 0.00 36.56 4.93
3867 5641 2.242572 CCATGTCGGATGCTCGCTG 61.243 63.158 0.00 0.00 36.56 5.18
3868 5642 1.520120 CATGTCGGATGCTCGCTGT 60.520 57.895 0.00 0.00 0.00 4.40
3869 5643 0.249031 CATGTCGGATGCTCGCTGTA 60.249 55.000 0.00 0.00 0.00 2.74
3870 5644 0.459899 ATGTCGGATGCTCGCTGTAA 59.540 50.000 0.00 0.00 0.00 2.41
3871 5645 0.459899 TGTCGGATGCTCGCTGTAAT 59.540 50.000 0.00 0.00 0.00 1.89
3872 5646 0.855349 GTCGGATGCTCGCTGTAATG 59.145 55.000 0.00 0.00 0.00 1.90
3873 5647 0.249447 TCGGATGCTCGCTGTAATGG 60.249 55.000 0.00 0.00 0.00 3.16
3874 5648 1.835483 CGGATGCTCGCTGTAATGGC 61.835 60.000 0.00 0.00 0.00 4.40
3875 5649 0.815213 GGATGCTCGCTGTAATGGCA 60.815 55.000 0.00 0.00 37.32 4.92
3876 5650 1.016627 GATGCTCGCTGTAATGGCAA 58.983 50.000 0.00 0.00 36.49 4.52
3877 5651 1.003116 GATGCTCGCTGTAATGGCAAG 60.003 52.381 0.00 0.00 36.49 4.01
3878 5652 0.321564 TGCTCGCTGTAATGGCAAGT 60.322 50.000 0.00 0.00 0.00 3.16
3879 5653 0.097674 GCTCGCTGTAATGGCAAGTG 59.902 55.000 0.00 0.00 0.00 3.16
3880 5654 1.442769 CTCGCTGTAATGGCAAGTGT 58.557 50.000 0.00 0.00 0.00 3.55
3881 5655 1.394917 CTCGCTGTAATGGCAAGTGTC 59.605 52.381 0.00 0.00 0.00 3.67
3882 5656 1.001974 TCGCTGTAATGGCAAGTGTCT 59.998 47.619 0.00 0.00 0.00 3.41
3883 5657 1.806542 CGCTGTAATGGCAAGTGTCTT 59.193 47.619 0.00 0.00 0.00 3.01
3884 5658 3.000041 CGCTGTAATGGCAAGTGTCTTA 59.000 45.455 0.00 0.00 0.00 2.10
3885 5659 3.062639 CGCTGTAATGGCAAGTGTCTTAG 59.937 47.826 0.00 0.00 0.00 2.18
3886 5660 4.003648 GCTGTAATGGCAAGTGTCTTAGT 58.996 43.478 0.00 0.00 0.00 2.24
3887 5661 4.455877 GCTGTAATGGCAAGTGTCTTAGTT 59.544 41.667 0.00 0.00 0.00 2.24
3888 5662 5.048713 GCTGTAATGGCAAGTGTCTTAGTTT 60.049 40.000 0.00 0.00 0.00 2.66
3889 5663 6.554334 TGTAATGGCAAGTGTCTTAGTTTC 57.446 37.500 0.00 0.00 0.00 2.78
3890 5664 5.472137 TGTAATGGCAAGTGTCTTAGTTTCC 59.528 40.000 0.00 0.00 0.00 3.13
3891 5665 3.569194 TGGCAAGTGTCTTAGTTTCCA 57.431 42.857 0.00 0.00 33.40 3.53
3892 5666 4.098914 TGGCAAGTGTCTTAGTTTCCAT 57.901 40.909 0.00 0.00 31.25 3.41
3893 5667 5.235850 TGGCAAGTGTCTTAGTTTCCATA 57.764 39.130 0.00 0.00 31.25 2.74
3894 5668 5.626142 TGGCAAGTGTCTTAGTTTCCATAA 58.374 37.500 0.00 0.00 31.25 1.90
3895 5669 5.705441 TGGCAAGTGTCTTAGTTTCCATAAG 59.295 40.000 0.00 0.00 31.25 1.73
3896 5670 5.938125 GGCAAGTGTCTTAGTTTCCATAAGA 59.062 40.000 0.00 0.00 37.01 2.10
3897 5671 6.430000 GGCAAGTGTCTTAGTTTCCATAAGAA 59.570 38.462 0.00 0.00 40.11 2.52
3898 5672 7.298854 GCAAGTGTCTTAGTTTCCATAAGAAC 58.701 38.462 0.00 0.54 40.11 3.01
3899 5673 7.173390 GCAAGTGTCTTAGTTTCCATAAGAACT 59.827 37.037 0.00 0.00 40.11 3.01
3900 5674 9.706691 CAAGTGTCTTAGTTTCCATAAGAACTA 57.293 33.333 0.00 0.00 40.11 2.24
3901 5675 9.708092 AAGTGTCTTAGTTTCCATAAGAACTAC 57.292 33.333 0.00 0.00 40.11 2.73
3902 5676 9.091220 AGTGTCTTAGTTTCCATAAGAACTACT 57.909 33.333 0.00 1.55 40.11 2.57
3903 5677 9.356433 GTGTCTTAGTTTCCATAAGAACTACTC 57.644 37.037 0.00 0.00 40.11 2.59
3904 5678 8.529476 TGTCTTAGTTTCCATAAGAACTACTCC 58.471 37.037 0.00 0.00 40.11 3.85
3905 5679 7.980662 GTCTTAGTTTCCATAAGAACTACTCCC 59.019 40.741 0.00 0.00 40.11 4.30
3906 5680 7.899709 TCTTAGTTTCCATAAGAACTACTCCCT 59.100 37.037 0.00 0.00 36.55 4.20
3907 5681 6.547930 AGTTTCCATAAGAACTACTCCCTC 57.452 41.667 0.00 0.00 32.95 4.30
3908 5682 6.265304 AGTTTCCATAAGAACTACTCCCTCT 58.735 40.000 0.00 0.00 32.95 3.69
3909 5683 6.155393 AGTTTCCATAAGAACTACTCCCTCTG 59.845 42.308 0.00 0.00 32.95 3.35
3910 5684 5.208294 TCCATAAGAACTACTCCCTCTGT 57.792 43.478 0.00 0.00 0.00 3.41
3911 5685 5.590818 TCCATAAGAACTACTCCCTCTGTT 58.409 41.667 0.00 0.00 0.00 3.16
3912 5686 5.657302 TCCATAAGAACTACTCCCTCTGTTC 59.343 44.000 0.00 0.00 39.06 3.18
3913 5687 5.163395 CCATAAGAACTACTCCCTCTGTTCC 60.163 48.000 0.00 0.00 39.45 3.62
3914 5688 3.837399 AGAACTACTCCCTCTGTTCCT 57.163 47.619 0.00 0.00 39.45 3.36
3915 5689 4.949966 AGAACTACTCCCTCTGTTCCTA 57.050 45.455 0.00 0.00 39.45 2.94
3916 5690 5.272405 AGAACTACTCCCTCTGTTCCTAA 57.728 43.478 0.00 0.00 39.45 2.69
3917 5691 5.652324 AGAACTACTCCCTCTGTTCCTAAA 58.348 41.667 0.00 0.00 39.45 1.85
3918 5692 6.265304 AGAACTACTCCCTCTGTTCCTAAAT 58.735 40.000 0.00 0.00 39.45 1.40
3919 5693 7.420029 AGAACTACTCCCTCTGTTCCTAAATA 58.580 38.462 0.00 0.00 39.45 1.40
3920 5694 8.068733 AGAACTACTCCCTCTGTTCCTAAATAT 58.931 37.037 0.00 0.00 39.45 1.28
3921 5695 9.364653 GAACTACTCCCTCTGTTCCTAAATATA 57.635 37.037 0.00 0.00 34.47 0.86
3922 5696 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
3923 5697 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
3924 5698 9.369672 CTACTCCCTCTGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 0.00 2.24
3925 5699 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
3926 5700 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
3927 5701 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
3928 5702 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
3929 5703 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
3930 5704 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.072965 AGAAGAGGCCAGGAACAAGTG 59.927 52.381 5.01 0.00 0.00 3.16
57 58 1.774254 TCAAGAAGAGGCCAGGAACAA 59.226 47.619 5.01 0.00 0.00 2.83
69 70 7.341805 CAGGGGATAGAAAGAAATCAAGAAGA 58.658 38.462 0.00 0.00 0.00 2.87
132 133 2.758089 GCGCCAGCTCTGTTCATGG 61.758 63.158 0.00 0.00 41.01 3.66
195 196 2.039613 CTCACCTGAGAAAAGAAGCCCT 59.960 50.000 0.00 0.00 44.74 5.19
220 222 0.733729 GCAGGAAGCATCAAGAGCAG 59.266 55.000 0.00 0.00 44.79 4.24
253 255 3.243839 GCATGGCTTGAAGAAACTGGAAA 60.244 43.478 4.32 0.00 0.00 3.13
275 300 4.887748 TCTCTCCAGAAACAGCAACTAAG 58.112 43.478 0.00 0.00 0.00 2.18
301 327 1.303643 GGTTGGGACTTGGGAGCAG 60.304 63.158 0.00 0.00 0.00 4.24
309 335 2.893489 GCAAGATCTTTGGTTGGGACTT 59.107 45.455 4.86 0.00 0.00 3.01
310 336 2.158475 TGCAAGATCTTTGGTTGGGACT 60.158 45.455 4.86 0.00 0.00 3.85
311 337 2.238521 TGCAAGATCTTTGGTTGGGAC 58.761 47.619 4.86 0.00 0.00 4.46
312 338 2.673775 TGCAAGATCTTTGGTTGGGA 57.326 45.000 4.86 0.00 0.00 4.37
313 339 2.159338 CGATGCAAGATCTTTGGTTGGG 60.159 50.000 4.86 0.00 0.00 4.12
314 340 2.489329 ACGATGCAAGATCTTTGGTTGG 59.511 45.455 4.86 0.00 0.00 3.77
315 341 3.837213 ACGATGCAAGATCTTTGGTTG 57.163 42.857 4.86 0.00 0.00 3.77
316 342 4.520492 AGAAACGATGCAAGATCTTTGGTT 59.480 37.500 4.86 2.78 0.00 3.67
317 343 4.074970 AGAAACGATGCAAGATCTTTGGT 58.925 39.130 4.86 0.00 0.00 3.67
318 344 4.437930 GGAGAAACGATGCAAGATCTTTGG 60.438 45.833 4.86 0.00 0.00 3.28
319 345 4.154737 TGGAGAAACGATGCAAGATCTTTG 59.845 41.667 4.86 2.98 0.00 2.77
320 346 4.326826 TGGAGAAACGATGCAAGATCTTT 58.673 39.130 4.86 0.00 0.00 2.52
332 358 1.860641 TAGCATCCCTGGAGAAACGA 58.139 50.000 0.00 0.00 0.00 3.85
367 393 2.110011 GGGGTGGGCATATAACCAAGAT 59.890 50.000 0.00 0.00 38.73 2.40
381 407 1.533033 GGGTCAAAACAGGGGTGGG 60.533 63.158 0.00 0.00 0.00 4.61
395 421 5.448632 CCATTAAGAAATAAGCGTGTGGGTC 60.449 44.000 0.00 0.00 0.00 4.46
396 422 4.398044 CCATTAAGAAATAAGCGTGTGGGT 59.602 41.667 0.00 0.00 0.00 4.51
415 463 2.827921 GGCTTTCACTGTTCCATCCATT 59.172 45.455 0.00 0.00 0.00 3.16
498 548 6.375174 ACAACAAGACATGAGCAGCATATTTA 59.625 34.615 0.00 0.00 34.82 1.40
526 576 7.563888 AATGGATCAGATTGAGTTACATGTG 57.436 36.000 9.11 0.00 0.00 3.21
531 581 7.987458 TCAGGTTAATGGATCAGATTGAGTTAC 59.013 37.037 0.00 0.00 0.00 2.50
560 610 6.094603 ACAAGAAATTGCATATCTGGTCAGAC 59.905 38.462 2.46 0.00 40.75 3.51
588 638 8.031864 TCTCATCTGTGATGAACTAGAAGAAAC 58.968 37.037 10.83 0.00 32.98 2.78
673 735 4.974368 TTTTACTAACGGCATCCCATTG 57.026 40.909 0.00 0.00 0.00 2.82
761 826 8.314021 TCTACAATAGGTATGGATAAGCATGTG 58.686 37.037 0.00 0.00 0.00 3.21
783 848 7.584987 ACCGCAGCATAAATCAATAAATCTAC 58.415 34.615 0.00 0.00 0.00 2.59
790 855 7.158697 ACACTATACCGCAGCATAAATCAATA 58.841 34.615 0.00 0.00 0.00 1.90
829 894 3.041211 AGCATCAGGGTGAAGTATAGCA 58.959 45.455 0.00 0.00 0.00 3.49
876 942 9.631452 GTTCAATCAAGGAAGAAAAATAAGGAG 57.369 33.333 0.00 0.00 0.00 3.69
892 960 6.991485 AAACTATGCGTTTGTTCAATCAAG 57.009 33.333 0.00 0.00 43.90 3.02
902 970 6.526674 GGTTAGGAATGAAAACTATGCGTTTG 59.473 38.462 0.00 0.00 44.77 2.93
906 974 5.811399 TGGTTAGGAATGAAAACTATGCG 57.189 39.130 0.00 0.00 0.00 4.73
907 975 8.129211 GTGTATGGTTAGGAATGAAAACTATGC 58.871 37.037 0.00 0.00 0.00 3.14
908 976 9.173021 TGTGTATGGTTAGGAATGAAAACTATG 57.827 33.333 0.00 0.00 0.00 2.23
981 1049 6.974622 GCTTCATTTTTCACAAGTCTTCAAGA 59.025 34.615 0.00 0.00 0.00 3.02
990 1058 2.061028 GGCGGCTTCATTTTTCACAAG 58.939 47.619 0.00 0.00 0.00 3.16
1258 1329 7.344095 AGTGTGTTGTAGACTTGTACTTACT 57.656 36.000 0.00 0.00 26.10 2.24
1259 1330 8.348507 AGTAGTGTGTTGTAGACTTGTACTTAC 58.651 37.037 0.00 0.00 34.32 2.34
1292 1363 5.129634 TGTACATCAAAAGCACCTGAAAGA 58.870 37.500 0.00 0.00 34.07 2.52
1319 1390 3.430374 GGTGCTACTGTACCATCGACAAT 60.430 47.826 0.00 0.00 46.34 2.71
1376 1447 5.766222 CTGTTTTTCATTTACTCAGCTGCT 58.234 37.500 9.47 0.00 0.00 4.24
1395 1466 6.655078 ATAACCATCAAAACTTCTGCTGTT 57.345 33.333 0.00 0.00 0.00 3.16
1458 1529 7.497249 GGAAAGTATCATCACTTCTGCTGTATT 59.503 37.037 0.00 0.00 37.78 1.89
1459 1530 6.989169 GGAAAGTATCATCACTTCTGCTGTAT 59.011 38.462 0.00 0.00 37.78 2.29
1460 1531 6.155221 AGGAAAGTATCATCACTTCTGCTGTA 59.845 38.462 0.00 0.00 37.78 2.74
1465 1657 6.875726 TGTCAAGGAAAGTATCATCACTTCTG 59.124 38.462 0.00 0.00 37.78 3.02
1467 1659 7.672983 TTGTCAAGGAAAGTATCATCACTTC 57.327 36.000 0.00 0.00 37.78 3.01
1470 1662 9.167311 AGTAATTGTCAAGGAAAGTATCATCAC 57.833 33.333 0.00 0.00 0.00 3.06
1473 1665 8.552296 AGGAGTAATTGTCAAGGAAAGTATCAT 58.448 33.333 0.00 0.00 0.00 2.45
1563 1755 5.296151 TCTATCTGCCCAATCCAGTAAAG 57.704 43.478 0.00 0.00 0.00 1.85
1798 1992 3.642901 CTCGACATGGGTAACGAGG 57.357 57.895 15.27 3.84 45.22 4.63
1804 1998 3.698040 GGTAGAAGTTCTCGACATGGGTA 59.302 47.826 9.12 0.00 31.64 3.69
2021 2215 7.807977 TGCTCTTGTTACTCAGAAAGAAATT 57.192 32.000 0.00 0.00 0.00 1.82
2076 2270 2.533266 TTCTGACTGTGAAGCTGACC 57.467 50.000 0.00 0.00 0.00 4.02
2119 2313 3.973305 TGTAGGTAATGCCATCATCCTCA 59.027 43.478 0.00 0.00 40.61 3.86
2135 2329 1.977854 TCTCTGGTGCAATGTGTAGGT 59.022 47.619 0.00 0.00 0.00 3.08
2173 2367 0.810648 GGTTTGCCGCATTGAGATCA 59.189 50.000 0.00 0.00 0.00 2.92
2185 2379 2.564721 AAGCAGCTTCCGGTTTGCC 61.565 57.895 0.21 0.00 37.26 4.52
2188 2382 1.507141 CGTCAAGCAGCTTCCGGTTT 61.507 55.000 4.07 0.00 0.00 3.27
2238 2432 1.105759 GCAATGGCACCTCAGGATCC 61.106 60.000 2.48 2.48 40.72 3.36
2241 2435 1.913951 ATCGCAATGGCACCTCAGGA 61.914 55.000 0.00 0.00 41.24 3.86
2304 2498 3.862267 CACGAACTCTCCATCAATGTCTC 59.138 47.826 0.00 0.00 0.00 3.36
2325 2519 5.801531 TTGTAGCTTCTCCTTAGTTGACA 57.198 39.130 0.00 0.00 0.00 3.58
2370 2564 2.834549 TCTTCGAGCCTCCTTTCAAGAT 59.165 45.455 0.00 0.00 0.00 2.40
2374 2568 0.243907 CGTCTTCGAGCCTCCTTTCA 59.756 55.000 0.00 0.00 39.71 2.69
2395 2589 3.633525 AGTGCTCTTCTGACAAAATTGCA 59.366 39.130 0.00 0.00 0.00 4.08
2419 2613 0.746063 TGTTTTGTTCCAGCAGCCTG 59.254 50.000 0.00 0.00 38.85 4.85
2461 2655 5.184864 TGAAGTCATCTCTTCCTTCAGACTC 59.815 44.000 0.00 0.00 41.96 3.36
2476 2670 1.846541 GCCGTCTAGCTGAAGTCATC 58.153 55.000 0.00 0.00 0.00 2.92
2480 2674 0.317479 AAACGCCGTCTAGCTGAAGT 59.683 50.000 0.00 0.00 0.00 3.01
2501 2695 5.068234 TCACTCTCGGATATTTTGTCGTT 57.932 39.130 0.00 0.00 0.00 3.85
2558 2752 4.421479 CAGCTTCTCGGACGCGGT 62.421 66.667 12.47 0.00 31.98 5.68
2576 2770 0.843309 TTGGTGGACTTCTCCTGCAA 59.157 50.000 0.00 0.00 37.48 4.08
2599 2793 1.002430 TGCAGCTTTCCTACCTCTGTG 59.998 52.381 0.00 0.00 0.00 3.66
2600 2794 1.352083 TGCAGCTTTCCTACCTCTGT 58.648 50.000 0.00 0.00 0.00 3.41
2611 2805 2.288395 CCGGTTCATTTCTTGCAGCTTT 60.288 45.455 0.00 0.00 0.00 3.51
2643 2837 4.422073 TCAGAAACTTTCTCCAGCTTGA 57.578 40.909 0.67 0.00 38.11 3.02
2645 2839 5.041191 TCTTCAGAAACTTTCTCCAGCTT 57.959 39.130 0.67 0.00 38.11 3.74
2951 3145 8.893727 GCTAAATTCTAGCTACTGAATTTTCCA 58.106 33.333 26.18 14.99 45.13 3.53
3018 3212 6.401796 GGTTTCACAGTTCCGTATGATGTTAC 60.402 42.308 0.00 0.00 0.00 2.50
3019 3213 5.640357 GGTTTCACAGTTCCGTATGATGTTA 59.360 40.000 0.00 0.00 0.00 2.41
3028 3222 1.071228 GGTAGGGTTTCACAGTTCCGT 59.929 52.381 0.00 0.00 0.00 4.69
3030 3224 1.071228 ACGGTAGGGTTTCACAGTTCC 59.929 52.381 0.00 0.00 0.00 3.62
3031 3225 2.140717 CACGGTAGGGTTTCACAGTTC 58.859 52.381 0.00 0.00 0.00 3.01
3037 3231 1.276989 GATGTCCACGGTAGGGTTTCA 59.723 52.381 0.00 0.00 0.00 2.69
3061 3255 9.271828 GCAAGAAATAATCCAAGAAAAGGAAAA 57.728 29.630 0.00 0.00 38.93 2.29
3064 3258 7.233348 AGTGCAAGAAATAATCCAAGAAAAGGA 59.767 33.333 0.00 0.00 39.97 3.36
3083 3285 1.162698 CCATCACCTCACAGTGCAAG 58.837 55.000 0.00 0.00 37.68 4.01
3166 3387 1.562942 AGCCTCCAAATGAGCTCATCA 59.437 47.619 28.83 12.55 43.70 3.07
3173 3394 4.836825 TCAGAACTTAGCCTCCAAATGAG 58.163 43.478 0.00 0.00 41.07 2.90
3174 3395 4.908601 TCAGAACTTAGCCTCCAAATGA 57.091 40.909 0.00 0.00 0.00 2.57
3244 3472 3.012518 AGGAATGGTTTGATTCTCGCTG 58.987 45.455 0.00 0.00 33.52 5.18
3248 3476 3.129988 CCTGCAGGAATGGTTTGATTCTC 59.870 47.826 29.88 0.00 37.39 2.87
3254 3482 0.899720 ATGCCTGCAGGAATGGTTTG 59.100 50.000 37.21 6.70 37.39 2.93
3280 3508 2.172930 ACAGCATCAGGATTCAGAGCAT 59.827 45.455 0.00 0.00 0.00 3.79
3341 3570 2.288666 GCAGTGTTCTGTTCTGTGGAA 58.711 47.619 0.00 0.00 43.05 3.53
3381 3610 6.261603 TGACATGCTAGATAAATGAAAGCTGG 59.738 38.462 0.00 0.00 34.28 4.85
3410 5184 7.704472 TCTTTTTCACTTGCGAAATGTTTGTAT 59.296 29.630 0.00 0.00 34.94 2.29
3422 5196 2.872245 TCCTCTGTCTTTTTCACTTGCG 59.128 45.455 0.00 0.00 0.00 4.85
3444 5218 6.743575 ACTTGTGCATAGATAGAAACCAAC 57.256 37.500 5.87 0.00 0.00 3.77
3455 5229 7.335924 GGTGTTTCCTTTATACTTGTGCATAGA 59.664 37.037 5.87 0.00 0.00 1.98
3457 5231 6.943146 TGGTGTTTCCTTTATACTTGTGCATA 59.057 34.615 0.00 0.00 37.07 3.14
3474 5248 7.438564 ACCAATTAGTTTTATGGTGGTGTTTC 58.561 34.615 0.00 0.00 44.25 2.78
3480 5254 5.890424 ACGACCAATTAGTTTTATGGTGG 57.110 39.130 0.27 2.69 45.85 4.61
3518 5292 4.097286 TGCCAGTTTTCCAAGTACAGTTTC 59.903 41.667 0.00 0.00 0.00 2.78
3522 5296 3.820467 TCATGCCAGTTTTCCAAGTACAG 59.180 43.478 0.00 0.00 0.00 2.74
3524 5298 4.846779 TTCATGCCAGTTTTCCAAGTAC 57.153 40.909 0.00 0.00 0.00 2.73
3539 5313 9.989869 CATGTCTTCTATATGATCAATTCATGC 57.010 33.333 0.00 0.00 44.90 4.06
3554 5328 3.988976 AGTGTGGTGCATGTCTTCTAT 57.011 42.857 0.00 0.00 0.00 1.98
3556 5330 3.261643 TGATAGTGTGGTGCATGTCTTCT 59.738 43.478 0.00 0.00 0.00 2.85
3557 5331 3.599343 TGATAGTGTGGTGCATGTCTTC 58.401 45.455 0.00 0.00 0.00 2.87
3560 5334 4.970662 AATTGATAGTGTGGTGCATGTC 57.029 40.909 0.00 0.00 0.00 3.06
3638 5412 1.761198 CACTCTGATCTGCCTGGATCA 59.239 52.381 0.00 11.68 46.50 2.92
3649 5423 6.610741 AGTTGTTTGAAAGTCACTCTGATC 57.389 37.500 0.00 0.00 0.00 2.92
3651 5425 7.103641 AGTAAGTTGTTTGAAAGTCACTCTGA 58.896 34.615 0.00 0.00 0.00 3.27
3664 5438 5.295787 TGCAGTTGTAGGAGTAAGTTGTTTG 59.704 40.000 0.00 0.00 0.00 2.93
3667 5441 4.141801 TGTGCAGTTGTAGGAGTAAGTTGT 60.142 41.667 0.00 0.00 0.00 3.32
3677 5451 1.867233 GTGTGACTGTGCAGTTGTAGG 59.133 52.381 6.28 0.00 42.66 3.18
3687 5461 0.464373 AGGCCTGTTGTGTGACTGTG 60.464 55.000 3.11 0.00 0.00 3.66
3710 5484 5.676552 TGGAGAACTAAACTTGTGCTGTAA 58.323 37.500 0.00 0.00 0.00 2.41
3711 5485 5.284861 TGGAGAACTAAACTTGTGCTGTA 57.715 39.130 0.00 0.00 0.00 2.74
3712 5486 4.150897 TGGAGAACTAAACTTGTGCTGT 57.849 40.909 0.00 0.00 0.00 4.40
3713 5487 4.576463 AGTTGGAGAACTAAACTTGTGCTG 59.424 41.667 0.00 0.00 40.85 4.41
3714 5488 4.781934 AGTTGGAGAACTAAACTTGTGCT 58.218 39.130 0.00 0.00 40.85 4.40
3715 5489 6.613755 TTAGTTGGAGAACTAAACTTGTGC 57.386 37.500 5.18 0.00 46.89 4.57
3724 5498 5.988310 TCCGAACATTAGTTGGAGAACTA 57.012 39.130 0.00 0.00 42.66 2.24
3725 5499 4.884668 TCCGAACATTAGTTGGAGAACT 57.115 40.909 0.00 0.00 44.90 3.01
3726 5500 5.617087 GCTTTCCGAACATTAGTTGGAGAAC 60.617 44.000 0.00 0.00 38.30 3.01
3727 5501 4.454504 GCTTTCCGAACATTAGTTGGAGAA 59.545 41.667 0.00 0.00 38.30 2.87
3728 5502 4.000988 GCTTTCCGAACATTAGTTGGAGA 58.999 43.478 0.00 0.00 38.30 3.71
3729 5503 3.127030 GGCTTTCCGAACATTAGTTGGAG 59.873 47.826 0.00 0.00 38.30 3.86
3730 5504 3.078837 GGCTTTCCGAACATTAGTTGGA 58.921 45.455 0.00 0.00 38.30 3.53
3731 5505 3.487563 GGCTTTCCGAACATTAGTTGG 57.512 47.619 0.00 0.00 38.30 3.77
3744 5518 1.376037 CCTCTCACACCGGCTTTCC 60.376 63.158 0.00 0.00 0.00 3.13
3745 5519 0.250513 ATCCTCTCACACCGGCTTTC 59.749 55.000 0.00 0.00 0.00 2.62
3746 5520 0.036010 CATCCTCTCACACCGGCTTT 60.036 55.000 0.00 0.00 0.00 3.51
3747 5521 1.599047 CATCCTCTCACACCGGCTT 59.401 57.895 0.00 0.00 0.00 4.35
3748 5522 2.362369 CCATCCTCTCACACCGGCT 61.362 63.158 0.00 0.00 0.00 5.52
3749 5523 1.899437 TTCCATCCTCTCACACCGGC 61.899 60.000 0.00 0.00 0.00 6.13
3750 5524 0.833287 ATTCCATCCTCTCACACCGG 59.167 55.000 0.00 0.00 0.00 5.28
3751 5525 1.473965 CCATTCCATCCTCTCACACCG 60.474 57.143 0.00 0.00 0.00 4.94
3752 5526 1.839994 TCCATTCCATCCTCTCACACC 59.160 52.381 0.00 0.00 0.00 4.16
3753 5527 3.539604 CTTCCATTCCATCCTCTCACAC 58.460 50.000 0.00 0.00 0.00 3.82
3754 5528 2.092753 GCTTCCATTCCATCCTCTCACA 60.093 50.000 0.00 0.00 0.00 3.58
3755 5529 2.092753 TGCTTCCATTCCATCCTCTCAC 60.093 50.000 0.00 0.00 0.00 3.51
3756 5530 2.092753 GTGCTTCCATTCCATCCTCTCA 60.093 50.000 0.00 0.00 0.00 3.27
3757 5531 2.570135 GTGCTTCCATTCCATCCTCTC 58.430 52.381 0.00 0.00 0.00 3.20
3758 5532 1.213926 GGTGCTTCCATTCCATCCTCT 59.786 52.381 0.00 0.00 35.97 3.69
3759 5533 1.064463 TGGTGCTTCCATTCCATCCTC 60.064 52.381 0.00 0.00 41.93 3.71
3760 5534 1.002069 TGGTGCTTCCATTCCATCCT 58.998 50.000 0.00 0.00 41.93 3.24
3761 5535 1.851304 TTGGTGCTTCCATTCCATCC 58.149 50.000 2.36 0.00 46.60 3.51
3762 5536 3.959535 TTTTGGTGCTTCCATTCCATC 57.040 42.857 2.36 0.00 46.60 3.51
3763 5537 3.583966 ACATTTTGGTGCTTCCATTCCAT 59.416 39.130 2.36 0.00 46.60 3.41
3764 5538 2.971330 ACATTTTGGTGCTTCCATTCCA 59.029 40.909 2.36 0.00 46.60 3.53
3765 5539 3.683365 ACATTTTGGTGCTTCCATTCC 57.317 42.857 2.36 0.00 46.60 3.01
3766 5540 5.812127 GGAATACATTTTGGTGCTTCCATTC 59.188 40.000 2.36 2.43 46.60 2.67
3767 5541 5.484998 AGGAATACATTTTGGTGCTTCCATT 59.515 36.000 2.36 0.00 46.60 3.16
3768 5542 5.025453 AGGAATACATTTTGGTGCTTCCAT 58.975 37.500 2.36 0.00 46.60 3.41
3769 5543 4.415596 AGGAATACATTTTGGTGCTTCCA 58.584 39.130 0.00 0.00 45.60 3.53
3770 5544 5.450550 GCTAGGAATACATTTTGGTGCTTCC 60.451 44.000 0.00 0.00 35.66 3.46
3771 5545 5.450550 GGCTAGGAATACATTTTGGTGCTTC 60.451 44.000 0.00 0.00 0.00 3.86
3772 5546 4.402474 GGCTAGGAATACATTTTGGTGCTT 59.598 41.667 0.00 0.00 0.00 3.91
3773 5547 3.954258 GGCTAGGAATACATTTTGGTGCT 59.046 43.478 0.00 0.00 0.00 4.40
3774 5548 3.954258 AGGCTAGGAATACATTTTGGTGC 59.046 43.478 0.00 0.00 0.00 5.01
3775 5549 6.530019 AAAGGCTAGGAATACATTTTGGTG 57.470 37.500 0.00 0.00 0.00 4.17
3776 5550 6.723977 TGAAAAGGCTAGGAATACATTTTGGT 59.276 34.615 0.00 0.00 0.00 3.67
3777 5551 7.169158 TGAAAAGGCTAGGAATACATTTTGG 57.831 36.000 0.00 0.00 0.00 3.28
3778 5552 7.093771 ACCTGAAAAGGCTAGGAATACATTTTG 60.094 37.037 8.04 0.00 35.55 2.44
3779 5553 6.954102 ACCTGAAAAGGCTAGGAATACATTTT 59.046 34.615 8.04 0.00 35.55 1.82
3780 5554 6.494059 ACCTGAAAAGGCTAGGAATACATTT 58.506 36.000 8.04 0.00 35.55 2.32
3781 5555 6.079712 ACCTGAAAAGGCTAGGAATACATT 57.920 37.500 8.04 0.00 35.55 2.71
3782 5556 5.717119 ACCTGAAAAGGCTAGGAATACAT 57.283 39.130 8.04 0.00 35.55 2.29
3783 5557 5.253330 CAACCTGAAAAGGCTAGGAATACA 58.747 41.667 8.04 0.00 35.55 2.29
3784 5558 4.096532 GCAACCTGAAAAGGCTAGGAATAC 59.903 45.833 8.04 0.00 35.55 1.89
3785 5559 4.263727 TGCAACCTGAAAAGGCTAGGAATA 60.264 41.667 8.04 0.00 35.55 1.75
3786 5560 3.092301 GCAACCTGAAAAGGCTAGGAAT 58.908 45.455 8.04 0.00 35.55 3.01
3787 5561 2.158534 TGCAACCTGAAAAGGCTAGGAA 60.159 45.455 8.04 0.00 35.55 3.36
3788 5562 1.423541 TGCAACCTGAAAAGGCTAGGA 59.576 47.619 8.04 0.00 35.55 2.94
3789 5563 1.815003 CTGCAACCTGAAAAGGCTAGG 59.185 52.381 0.00 0.00 37.61 3.02
3790 5564 2.508526 ACTGCAACCTGAAAAGGCTAG 58.491 47.619 0.00 0.00 0.00 3.42
3791 5565 2.656947 ACTGCAACCTGAAAAGGCTA 57.343 45.000 0.00 0.00 0.00 3.93
3792 5566 2.230660 GTACTGCAACCTGAAAAGGCT 58.769 47.619 0.00 0.00 0.00 4.58
3793 5567 1.269723 GGTACTGCAACCTGAAAAGGC 59.730 52.381 0.00 0.00 36.53 4.35
3794 5568 2.554032 CTGGTACTGCAACCTGAAAAGG 59.446 50.000 8.97 0.00 40.02 3.11
3795 5569 3.214328 ACTGGTACTGCAACCTGAAAAG 58.786 45.455 18.30 6.02 40.02 2.27
3796 5570 3.290948 ACTGGTACTGCAACCTGAAAA 57.709 42.857 18.30 0.00 40.02 2.29
3797 5571 3.644265 TCTACTGGTACTGCAACCTGAAA 59.356 43.478 18.30 7.45 40.02 2.69
3798 5572 3.236047 TCTACTGGTACTGCAACCTGAA 58.764 45.455 18.30 4.03 40.02 3.02
3799 5573 2.884320 TCTACTGGTACTGCAACCTGA 58.116 47.619 18.30 5.59 40.02 3.86
3800 5574 3.244078 TGTTCTACTGGTACTGCAACCTG 60.244 47.826 11.70 11.70 42.48 4.00
3801 5575 2.969950 TGTTCTACTGGTACTGCAACCT 59.030 45.455 8.97 0.00 40.44 3.50
3802 5576 3.064931 GTGTTCTACTGGTACTGCAACC 58.935 50.000 0.21 0.21 40.19 3.77
3803 5577 3.991367 AGTGTTCTACTGGTACTGCAAC 58.009 45.455 0.00 0.00 38.49 4.17
3804 5578 4.585581 TGTAGTGTTCTACTGGTACTGCAA 59.414 41.667 6.89 0.00 44.74 4.08
3805 5579 4.146564 TGTAGTGTTCTACTGGTACTGCA 58.853 43.478 6.89 0.00 44.74 4.41
3806 5580 4.778534 TGTAGTGTTCTACTGGTACTGC 57.221 45.455 6.89 0.00 44.74 4.40
3807 5581 6.328641 AGTTGTAGTGTTCTACTGGTACTG 57.671 41.667 6.89 0.00 44.74 2.74
3808 5582 5.180868 CGAGTTGTAGTGTTCTACTGGTACT 59.819 44.000 6.89 0.00 44.74 2.73
3809 5583 5.388944 CGAGTTGTAGTGTTCTACTGGTAC 58.611 45.833 6.89 0.00 44.74 3.34
3810 5584 4.456911 CCGAGTTGTAGTGTTCTACTGGTA 59.543 45.833 6.89 0.00 44.74 3.25
3811 5585 3.255149 CCGAGTTGTAGTGTTCTACTGGT 59.745 47.826 6.89 0.00 44.74 4.00
3812 5586 3.504906 TCCGAGTTGTAGTGTTCTACTGG 59.495 47.826 6.89 0.00 44.74 4.00
3813 5587 4.761235 TCCGAGTTGTAGTGTTCTACTG 57.239 45.455 6.89 0.00 44.74 2.74
3814 5588 4.320057 CGTTCCGAGTTGTAGTGTTCTACT 60.320 45.833 6.89 0.00 44.74 2.57
3815 5589 3.910767 CGTTCCGAGTTGTAGTGTTCTAC 59.089 47.826 0.00 0.00 44.72 2.59
3816 5590 3.814842 TCGTTCCGAGTTGTAGTGTTCTA 59.185 43.478 0.00 0.00 0.00 2.10
3817 5591 2.620115 TCGTTCCGAGTTGTAGTGTTCT 59.380 45.455 0.00 0.00 0.00 3.01
3818 5592 3.004024 TCGTTCCGAGTTGTAGTGTTC 57.996 47.619 0.00 0.00 0.00 3.18
3819 5593 3.441496 TTCGTTCCGAGTTGTAGTGTT 57.559 42.857 0.00 0.00 37.14 3.32
3820 5594 3.655276 ATTCGTTCCGAGTTGTAGTGT 57.345 42.857 0.00 0.00 37.14 3.55
3821 5595 6.642683 ATTTATTCGTTCCGAGTTGTAGTG 57.357 37.500 0.00 0.00 37.14 2.74
3824 5598 9.248291 GGTTATATTTATTCGTTCCGAGTTGTA 57.752 33.333 0.00 0.00 37.14 2.41
3825 5599 7.765360 TGGTTATATTTATTCGTTCCGAGTTGT 59.235 33.333 0.00 0.00 37.14 3.32
3826 5600 8.133754 TGGTTATATTTATTCGTTCCGAGTTG 57.866 34.615 0.00 0.00 37.14 3.16
3827 5601 8.770828 CATGGTTATATTTATTCGTTCCGAGTT 58.229 33.333 0.00 0.00 37.14 3.01
3828 5602 7.929785 ACATGGTTATATTTATTCGTTCCGAGT 59.070 33.333 0.00 0.00 37.14 4.18
3829 5603 8.306680 ACATGGTTATATTTATTCGTTCCGAG 57.693 34.615 0.00 0.00 37.14 4.63
3830 5604 7.115236 CGACATGGTTATATTTATTCGTTCCGA 59.885 37.037 0.00 0.00 0.00 4.55
3831 5605 7.224710 CGACATGGTTATATTTATTCGTTCCG 58.775 38.462 0.00 0.00 0.00 4.30
3832 5606 7.385752 TCCGACATGGTTATATTTATTCGTTCC 59.614 37.037 0.00 0.00 39.52 3.62
3833 5607 8.301730 TCCGACATGGTTATATTTATTCGTTC 57.698 34.615 0.00 0.00 39.52 3.95
3834 5608 8.717821 CATCCGACATGGTTATATTTATTCGTT 58.282 33.333 0.00 0.00 39.52 3.85
3835 5609 7.148474 GCATCCGACATGGTTATATTTATTCGT 60.148 37.037 0.00 0.00 39.52 3.85
3836 5610 7.064609 AGCATCCGACATGGTTATATTTATTCG 59.935 37.037 0.00 0.00 39.52 3.34
3837 5611 8.268850 AGCATCCGACATGGTTATATTTATTC 57.731 34.615 0.00 0.00 39.52 1.75
3838 5612 7.064609 CGAGCATCCGACATGGTTATATTTATT 59.935 37.037 0.00 0.00 39.52 1.40
3839 5613 6.535150 CGAGCATCCGACATGGTTATATTTAT 59.465 38.462 0.00 0.00 39.52 1.40
3840 5614 5.867174 CGAGCATCCGACATGGTTATATTTA 59.133 40.000 0.00 0.00 39.52 1.40
3841 5615 4.690748 CGAGCATCCGACATGGTTATATTT 59.309 41.667 0.00 0.00 39.52 1.40
3842 5616 4.245660 CGAGCATCCGACATGGTTATATT 58.754 43.478 0.00 0.00 39.52 1.28
3843 5617 3.849911 CGAGCATCCGACATGGTTATAT 58.150 45.455 0.00 0.00 39.52 0.86
3844 5618 2.609491 GCGAGCATCCGACATGGTTATA 60.609 50.000 0.00 0.00 39.52 0.98
3845 5619 1.873903 GCGAGCATCCGACATGGTTAT 60.874 52.381 0.00 0.00 39.52 1.89
3846 5620 0.529773 GCGAGCATCCGACATGGTTA 60.530 55.000 0.00 0.00 39.52 2.85
3847 5621 1.815421 GCGAGCATCCGACATGGTT 60.815 57.895 0.00 0.00 39.52 3.67
3848 5622 2.202932 GCGAGCATCCGACATGGT 60.203 61.111 0.00 0.00 39.52 3.55
3849 5623 2.107750 AGCGAGCATCCGACATGG 59.892 61.111 0.00 0.00 40.09 3.66
3850 5624 0.249031 TACAGCGAGCATCCGACATG 60.249 55.000 0.00 0.00 0.00 3.21
3851 5625 0.459899 TTACAGCGAGCATCCGACAT 59.540 50.000 0.00 0.00 0.00 3.06
3852 5626 0.459899 ATTACAGCGAGCATCCGACA 59.540 50.000 0.00 0.00 0.00 4.35
3853 5627 0.855349 CATTACAGCGAGCATCCGAC 59.145 55.000 0.00 0.00 0.00 4.79
3854 5628 0.249447 CCATTACAGCGAGCATCCGA 60.249 55.000 0.00 0.00 0.00 4.55
3855 5629 1.835483 GCCATTACAGCGAGCATCCG 61.835 60.000 0.00 0.00 0.00 4.18
3856 5630 0.815213 TGCCATTACAGCGAGCATCC 60.815 55.000 0.00 0.00 0.00 3.51
3857 5631 1.003116 CTTGCCATTACAGCGAGCATC 60.003 52.381 0.00 0.00 35.05 3.91
3858 5632 1.019673 CTTGCCATTACAGCGAGCAT 58.980 50.000 0.00 0.00 35.05 3.79
3859 5633 0.321564 ACTTGCCATTACAGCGAGCA 60.322 50.000 0.00 0.00 44.30 4.26
3860 5634 0.097674 CACTTGCCATTACAGCGAGC 59.902 55.000 0.00 0.00 44.30 5.03
3861 5635 1.394917 GACACTTGCCATTACAGCGAG 59.605 52.381 0.00 0.00 45.67 5.03
3862 5636 1.001974 AGACACTTGCCATTACAGCGA 59.998 47.619 0.00 0.00 0.00 4.93
3863 5637 1.442769 AGACACTTGCCATTACAGCG 58.557 50.000 0.00 0.00 0.00 5.18
3864 5638 4.003648 ACTAAGACACTTGCCATTACAGC 58.996 43.478 0.00 0.00 0.00 4.40
3865 5639 6.348540 GGAAACTAAGACACTTGCCATTACAG 60.349 42.308 0.00 0.00 0.00 2.74
3866 5640 5.472137 GGAAACTAAGACACTTGCCATTACA 59.528 40.000 0.00 0.00 0.00 2.41
3867 5641 5.472137 TGGAAACTAAGACACTTGCCATTAC 59.528 40.000 0.00 0.00 0.00 1.89
3868 5642 5.626142 TGGAAACTAAGACACTTGCCATTA 58.374 37.500 0.00 0.00 0.00 1.90
3869 5643 4.469657 TGGAAACTAAGACACTTGCCATT 58.530 39.130 0.00 0.00 0.00 3.16
3870 5644 4.098914 TGGAAACTAAGACACTTGCCAT 57.901 40.909 0.00 0.00 0.00 4.40
3871 5645 3.569194 TGGAAACTAAGACACTTGCCA 57.431 42.857 0.00 0.00 0.00 4.92
3872 5646 5.938125 TCTTATGGAAACTAAGACACTTGCC 59.062 40.000 0.00 0.00 31.83 4.52
3873 5647 7.173390 AGTTCTTATGGAAACTAAGACACTTGC 59.827 37.037 0.00 0.00 35.50 4.01
3874 5648 8.608844 AGTTCTTATGGAAACTAAGACACTTG 57.391 34.615 0.00 0.00 35.50 3.16
3875 5649 9.708092 GTAGTTCTTATGGAAACTAAGACACTT 57.292 33.333 0.00 0.00 35.50 3.16
3876 5650 9.091220 AGTAGTTCTTATGGAAACTAAGACACT 57.909 33.333 0.00 0.00 35.50 3.55
3877 5651 9.356433 GAGTAGTTCTTATGGAAACTAAGACAC 57.644 37.037 0.00 0.00 35.50 3.67
3878 5652 8.529476 GGAGTAGTTCTTATGGAAACTAAGACA 58.471 37.037 0.00 0.00 35.50 3.41
3879 5653 7.980662 GGGAGTAGTTCTTATGGAAACTAAGAC 59.019 40.741 0.00 0.00 35.50 3.01
3880 5654 7.899709 AGGGAGTAGTTCTTATGGAAACTAAGA 59.100 37.037 0.00 0.00 35.51 2.10
3881 5655 8.080363 AGGGAGTAGTTCTTATGGAAACTAAG 57.920 38.462 0.00 0.00 35.51 2.18
3882 5656 7.899709 AGAGGGAGTAGTTCTTATGGAAACTAA 59.100 37.037 0.00 0.00 35.51 2.24
3883 5657 7.342284 CAGAGGGAGTAGTTCTTATGGAAACTA 59.658 40.741 0.00 0.00 35.51 2.24
3884 5658 6.155393 CAGAGGGAGTAGTTCTTATGGAAACT 59.845 42.308 0.00 0.00 35.51 2.66
3885 5659 6.070710 ACAGAGGGAGTAGTTCTTATGGAAAC 60.071 42.308 0.00 0.00 35.51 2.78
3886 5660 6.023603 ACAGAGGGAGTAGTTCTTATGGAAA 58.976 40.000 0.00 0.00 35.51 3.13
3887 5661 5.590818 ACAGAGGGAGTAGTTCTTATGGAA 58.409 41.667 0.00 0.00 0.00 3.53
3888 5662 5.208294 ACAGAGGGAGTAGTTCTTATGGA 57.792 43.478 0.00 0.00 0.00 3.41
3889 5663 5.163395 GGAACAGAGGGAGTAGTTCTTATGG 60.163 48.000 0.00 0.00 40.05 2.74
3890 5664 5.659079 AGGAACAGAGGGAGTAGTTCTTATG 59.341 44.000 0.00 0.00 40.05 1.90
3891 5665 5.844601 AGGAACAGAGGGAGTAGTTCTTAT 58.155 41.667 0.00 0.00 40.05 1.73
3892 5666 5.272405 AGGAACAGAGGGAGTAGTTCTTA 57.728 43.478 0.00 0.00 40.05 2.10
3893 5667 4.134933 AGGAACAGAGGGAGTAGTTCTT 57.865 45.455 0.00 0.00 40.05 2.52
3894 5668 3.837399 AGGAACAGAGGGAGTAGTTCT 57.163 47.619 0.00 0.00 40.05 3.01
3895 5669 5.997384 TTTAGGAACAGAGGGAGTAGTTC 57.003 43.478 0.00 0.00 39.59 3.01
3896 5670 9.725206 TTATATTTAGGAACAGAGGGAGTAGTT 57.275 33.333 0.00 0.00 0.00 2.24
3897 5671 9.369672 CTTATATTTAGGAACAGAGGGAGTAGT 57.630 37.037 0.00 0.00 0.00 2.73
3898 5672 9.369672 ACTTATATTTAGGAACAGAGGGAGTAG 57.630 37.037 0.00 0.00 0.00 2.57
3899 5673 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
3900 5674 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
3901 5675 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
3902 5676 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
3903 5677 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
3904 5678 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.