>input_sequence_40696
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---------------------------ATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTG
GGATAGTCACATTAGCCCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATT
TTCTATATGATTTTTTTTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGAT
TGTATGTTGCACTGAAATGAGC---ATAAATGAATAACAATAAAACAAAGTAAGTACAAGTCTACAACACACTACTTTCT
TATCTTTCAGGTGCTTTTGATGTACATATATTGTCGATGGTACAGTAGCACCATCTGATTGTTCGTGGAGCTAATGACTA
GGAATTAGCAGCTGAGTAAATGAAAAACAGCAGAAGTTTTGATGGTTATTCCTGTTATTTTAGGTTTTGGTGTGGTAGCC
TTCTGTGAAAT---------------------------------------------------------------------
----------------------------------------------------ACAGCAGAAGTGATGATACTTTCCTTGA
CAATTACTCCTTTTATTTATATTTATTTTTTTACTTTTGTTGCTCTTGCCTTCAAGTTTTTCTTTTATTACTCACTTTAC
TGGATTGGGCAGATAGATTGTAGTTGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCAATTCTGTATGTTATCACTG
TTATTCTT--TAAAAGTAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATG
GTGCAGCTTATTGAGGAAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTCCTCGTTAC
CCATGTCGAGAACTTCTACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACA
TCCCTTCAAGGATGCAGTCCCAAGGATCTTTATCCGGTTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCT
CCTGAGCCCCAGAAGTCCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCAATTTCTTTCTGAGTAACAAGAGCAA
TGACTCACCGTCCTCAAGGAAGGAGCCTGGGTCAGCTTCACAGTCAGAATCTGACATGAAGTCTGAAGATGGTGAGGATG
ATGGCATTACCTACACATTGCACCAGAGAGTTCTCGAGCTCGAGGATGATCTCAATGCGGCAAACCGGAAGCTGCTTGAC
GCAAACGAAAAGCTCGAGGTTTTCGAGGAGAGGATCCTGAGGTGCCATTGCGATTATAAGGAAAATGGAAATGGCGCCGA
TCATGCTACCAAAATTAGAGACATTGATGGAGAGTTCGTGTCAACTAAGGAGAAGCTACAATCTTCACAAGTGGAGATCA
ACAATCTTGAAAGGAGGCTCGAAGACGCTGCAATTTTGTCAGAAGAGCACTCCAGGCTGCTGGAACAAAACAAGGGACTG
GAAGCTGAAATTGTGAGTCTGAAGGAAGAGATGACTTCAGCTAGACGGCGTTTCAACGACAAAATATCCGAGAGTGATGC
CGAGATCAGCCAGTACAGGCAAGAGCTTGCCACCGCGTCCGAGAAGCTGTTGCAGGAGAAGTCCACCAACAGCACAGAGG
TAGGAAAGCTGCAAGAAATGAACCGGATCACCAGTCTCAAGCTGGAGAAAGTTTCTGAAGAGAAGTCTCTAGTGGAGGAC
CAGGTGAAGGAGCTGGAGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTC
GGAGGACAAGTTCAGACATGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTTGAGAGCA
TCGCAAGAGAGAAATCGCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGCGTCGTGGAGCGAGGAAGGAGCGTTGTCATT
CCCCCGGAATAA--------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G112100
TGGAGACTCTCACGCGTTTGCTTCAAGCATTGACCCGAGCATAAATCTTCCAGCCACTTGTTCCTGGCCTCTTCTTGATT
TCTTTCTATCCCCTGCCTGTCCGTGTAGTGCTCAGATTTGGTCATCATGAAGCCATGAACAGAGCTGGCGCCTCTGGTGC
AGGATCCTGACGACCTGCGTCTCTGAAGGGGGAGAAGG-GCTTCTTTTCTCAGGTGAGATTCTGCTCTTGATGCTTCCTG
CTCATCTGGAATCTTTTCCAGT-----------------------TTCTTCAAGCCATGCTTAGTTGCTGTTTC-TGGAG
AGATGGCTGCTCCCAAGTCCCAACCAAAGATCTTGCATCGTTTCTCCAGGGATGCTATTATCTTTTGATCTGATCTTGGT
TATATGCCCACCCCTGTTTTGAC----------------------CCACACGCTTATTTCTTAATGGATGGAACAGTGAA
AGCCGCCTGCTGAATCCTTGCTTCTCTGTTTGGTAAAAAAGGGTTATCCTTG--ATACCACAGTAAGTAAATATGCTGCT
CATGTCTTGTTGTTGCACATGTAACTCAATCTGATCCATTAACCTGATGGTCTGACCAGATATGCAATTTCTTGTTCGTT
TCTTCTAGTTCATCACAGATGAGATTTAAGCATTTATTTCTCGAGGACATAGATTTTATTACACGAATGTACTAC-----
-------TAGACGCCAATGGGATGCCGTTAGTAAAAATTGGAAATAACT---TATTATCCAACTAACAAGGACTAGAATG
AGTGGCTGCTGGCTTTGTTGCCATTCACATGCTTATCCATACCTATTGTAGATTTATTGATTTATGCTGCGGTATAGTGT
ATTCATTTCGCAGTGCTATACTTCACCCTGATGCTTATGATTTGGGAAGTTCAA-ATATCACTCCTTATTTTTCT--TCC
TTGATTGAACAAACGCATAGTTTTCATTCCTAACCATACACATTTCCCCTTTCCATTTAGTGCTTGAATCTGCTAAACTT
CCAGATCTTCTTGAAGACTTGTGAAAAATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTG
GGATAGTCACATTAGCCCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATT
TTCTATATGATTTTTTTTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGAT
TGTATGTTGCACTGAAATGAGC---ATAAATGAATAACAATAAAACAAAGTAAGTACAAGTCTACAACACACTACTTTCT
TATCTTTCAGGTGCTTTTGATGTACATATATTGTCGATGGTACAGTAGCACCATCTGATTGTTCGTGGAGCTAATGACTA
GGAATTAGCAGCTGAGTAAATGAAAAACAGCAGAAGTTTTGATGGTTATTCCTGTTATTTTAGGTTTTGGTGTGGTAGCC
TTCTGTGAAAT---------------------------------------------------------------------
----------------------------------------------------ACAGCAGAAGTGATGATACTTTCCTTGA
CAATTACTCCTTTTATTTATATTTATTTTTTTACTTTTGTTGCTCTTGCCTTCAAGTTTTTCTTTTATTACTCACTTTAC
TGGATTGGGCAGATAGATTGTAGTTGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCAATTCTGTATGTTATCACTG
TTATTCTT--TAAAAGTAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATG
GTGCAGCTTATTGAGGAAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTCCTCGTTAC
CCATGTCGAGAACTTCTACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACA
TCCCTTCAAGGATGCAGTCCCAAGGATCTTTATCCGGTTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCT
CCTGAGCCCCAGAAGTCCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCAATTTCTTTCTGAGTAACAAGAGCAA
TGACTCACCGTCCTCAAGGAAGGAGCCTGGGTCAGCTTCACAGTCAGAATCTGACATGAAGTCTGAAGATGGTGAGGATG
ATGGCATTACCTACACATTGCACCAGAGAGTTCTCGAGCTCGAGGATGATCTCAATGCGGCAAACCGGAAGCTGCTTGAC
GCAAACGAAAAGCTCGAGGTTTTCGAGGAGAGGATCCTGAGGTGCCATTGCGATTATAAGGAAAATGGAAATGGCGCCGA
TCATGCTACCAAAATTAGAGACATTGATGGAGAGTTCGTGTCAACTAAGGAGAAGCTACAATCTTCACAAGTGGAGATCA
ACAATCTTGAAAGGAGGCTCGAAGACGCTGCAATTTTGTCAGAAGAGCACTCCAGGCTGCTGGAACAAAACAAGGGACTG
GAAGCTGAAATTGTGAGTCTGAAGGAAGAGATGACTTCAGCTAGACGGCGTTTCAACGACAAAATATCCGAGAGTGATGC
CGAGATCAGCCAGTACAGGCAAGAGCTTGCCACCGCGTCCGAGAAGCTGTTGCAGGAGAAGTCCACCAACAGCACAGAGG
TAGGAAAGCTGCAAGAAATGAACCGGATCACCAGTCTCAAGCTGGAGAAAGTTTCTGAAGAGAAGTCTCTAGTGGAGGAC
CAGGTGAAGGAGCTGGAGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTC
GGAGGACAAGTTCAGACATGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTTGAGAGCA
TCGCAAGAGAGAAATCGCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGCGTCGTGGAGCGAGGAAGGAGCGTTGTCATT
CCCCCGGAATAACCCGGTTTCGTCTGGAAAATTCAGTAGCTAGAATTTAGCAAACTAGCAGTGCTATCTCTTTGTTTTTT
TGGCCTGAGATGTAACATCATACGGAACTGTGAAACCCTACCGTGGACATCAGCTTTTCCTTTTCTTGGATTATTT----
----CTTGCACTGTGAGGTGATGGGTGGTGGTCGTGGTGTATGAA---------------ACATTTGCACTGAATGCAT-
---TTCCTTTGGCAATAAAATGTCTCTGATGAGCT-------CATTTGGAGGCTAAGTTCTGAACTCCTAATGCTGCAGC
TGTTGATATCTAGCCAAGTGGCTCGATATTGCAGCGAGAATCAAACCATTCCTGCAGGCATCATCCCATGCTCTGAATCC
TGATGCTGTCATGATTCATGTCATCGACACGGCGCCCC-AACTTACAACTTCCACAGAACAGAACACTGCCACATTCATC
AGTGAGCTCCCAGCTTTCATTTATCTAGCATG------------------------------------------------
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---------------------------------------------------------TCATATATACAAACATTTCGCAA
GTGAAAAAGACAGAGGAGTTGGTTTCTATCTATGCACAAGTATAAAGGAAACACCACCATAAAACTAATTGGTCGTTGAC
ATAAAACAATGGAAACTGTACTTGGAAAACTGGCATGAATTGATCATATAGAAGACATGCACCACACTATCAATTTATAA
GTATCAAGAGGAATTTCAAATTCCTTTTACAAGTTCCAATAAATAAGGATCTGATCCAGGCAGATCAGAGTGACTTTCAA
ACAACTTACTCCTACAACTGCACAGTCACACAACAGGCCTGGTTTACAGCACAAGTTTAGTTCTCCAACTAATGTTCGGA
AAGCCGGTGTGAGAGGATGGAATGGAAGCACCAAAATGTATTCCTAGCCTTTTCAGGTTGCAGTACCAGTAGAACACTAC
AACTCGGAACGAATAAATATAACCATGTCGGATGCTCGCTGTAATGGCAAGTGTCTTAGTTTCCATAAGAACTACTCCCT
CTGTTCCTAAATATAAGTCTTTGTAAGGATCT
>chr3D_1
TGGAGACTCTCACGCGTTTGCTTCAAGCATTGACCCGAGCATAAATCTTCCAGCTACCTGTTCCTGGCCCCTTCTTGATT
TCTTTCTATCCCCTGCCTCTCCGTGTAGTGCTCAGATTTGGCCAGCATGAAGGCATGAACAGAGCTGGCGCCTCAGGTGC
AGGATCCTGACGACCTGCGTCTCTGAAGGGGGAGAGGG-GCTTCTTTTCTCAGGTGAGATAGTGCTCTTGATGCTTCCTG
CTCATCTGGAATCTGTTCCAGTT----------GTATGTTTCAGTTTCTTCAAGCCGTGTTTATTTCCTGTTTTTTGGAG
AGATGGTTGCTCCC------------AAGATCTTGCAGAGTTTCTCCAGGGATGTTGTTCTCTTTTGATCTGGTCCTGGT
TATACGGCCACCCCTGTTATCTCTCTTGATGCGACTGTACTATATCCACACGCTTATTTCTTCATGGATGGAACAGTAAA
AGACGCCTGACGAATCATTGCTTTTCTGTTTGCTAAAAATGGGTTATCCTTGATATACCACAGTAAGAAAATATGCTGCT
GATGTCTTGTTGC---ACATATAGCTTAATTTTATCCATTGACCTGATGATCTGACCAGA--TGCAATTTCTTGTT----
------AGTTCATCACAGGTGAGATTTAAGCATTTATTTCTCGAGGACACGGTAGATTTCATACACCAAT----------
GTACTACTAGATGCTAATCGGACGCCGTTCGTAAAAACTGGAAATAATTTAGTATTATCCAACTAGCAAGGACTAGAATG
AGTGGTTGCTGGCATTGTTGCCATTTACATGCTTATCCATACCTATTTTAGATTGATTGATTTATGCTGCGGTATAGTGT
ATTCATTTCGCAGCGCTATACTTCACCCTGATGTTTATGATTTGGGAAGTTCAACATATCATTCCTTATTTTTCT--TCT
TTGATTGAAGAAAGATATAGTTTTCATTTCTAACCATACACATTTTCA-TTTCCATTTAGTGCTTGAATCTGCTAAACTT
CTAGCTCTCCTTGAAGATTTGTGAAAAATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTG
GGATAGTCACATTAGCCCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGATTATACCTAGACAATT
TCCTATATGA-TTTTTTTCTTAGTACTTGCTAGTAAACATATACTGTCAATGCATGTATAGGTACAGTACAATGTCTGAT
TGTATGTTGCACTGAAATGAGC---ATAAATGAATAATAATAAAAC----TAAGTACAAGTCTACAACACACTACTTTCT
TAGCTTTCAGGTGCTTTTGATGTACATATGTTGTTAATGGTACAGTAGCAGCATCTGATTGTTCGTGGAGCTAATGACTA
GGAATTGGCAGCTGAGTAAATGAAATACAGCAGAAGTTTTGATGGTT-TTCCTGTTCTTTTAGGTTTTGGTGTGGTAGCC
TTCTGTGACTGTTCATTGTGCATTTGCTTCAAGATTTAAGACGAGTGGTAAATAAGATTGTTGATGCTTCCATAGTCAAG
TGAGATAAATGGTATACATATTTTAGTTTAGCAGAAATTGGCAGTGAGATAAACGGAAAAAATGTTGATACTTTCCTTGA
CAATTCCTGCTTTTATTTTTATTTA--TTTTTACTTTTGTTGCTCTTGCCTTCAAGCTTTTATTTTATTACTCATTTTAC
CGGATTGGGCAGATAGATTGTAGTCGAGTTGTTTGAGGTGTTGTCCATGCTACTGTTATCTGTTCTCTATGTTATCACTG
TTATTCTTGTTAAAAGTAGCCTTATCTAAGCTTTCACTGAACTGAAATATGCAGAAATGGATAAGCAAGTGAAGGAAATG
GTGCAGCTTATTGAGGAAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTGCTCGTCAC
CCATGTTGAGAACTTCTACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACA
TCCCTTCAAGGATGCAGTCCCAAGGATCGTTATCCGGCTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCT
CCTGAGCCACAGAAGTCCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCGATTTCTTTCTGAGTAACAAGAGCAA
TGACTCACCATCCTCAAGGAAGGAGCCTGAGTCAGCTTCACAGTCAGAATCCGACATGAAGTCTGAGGATGGCGACGATG
ATGGCATTGCCTACACATTGCACCAGAGAGTTCTCGAGCTCGAGGACGATCTCAACGCCGCGAACCGGAAGCTGCTTGAT
GCAAACGAAAAGCTCGAGGTTTTCGAGGAGAAGAGCCTGAGGTGCCATTGCGATTATATGGAAAATGGAAATGGCTCCGA
TCATGCTCCCAAAATTACAGACATCAATGGAGAGTTCGCGTCAACTAAGGAGAGGCTACAATCTTCACAAGTGGAGATCA
ACACTCTCGAAAGGAGGCTCGAGGACGCCGCAATTTTATCAGAAGAGCACTCTAGGCTGCTGGAACAAAACAAGGGACTG
GAAGCTGAAATCGTCAGTCTGAAGGAAGAAATGGCTTCAGCGAGACGGCGTTTCGACGACAAACTATCCGAGAGCGACGC
CGAGATCAGCAAGTACAGGCAAGAGCTTGCTGCTGCATCTCAGAAGCTGCTGCAGGAGAAGTCCACCAACAGTGCAGAGG
TGGGTAAGCTGCAAGAGACTATCCGGATCAGCAGTCGCGAGCTGGAAAAAGTTTCTGAAGAGAAATCTCTGGTGGAGCAG
CAGGTGAAGGAGCTGGAGGAGGCGAACGCCGAAGCCGAAAGGCAGAGGCAGGAGCTCGTCCATGCCGCCGAAATGCTGTC
GGAGGACAAGTTCAGACACGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAAACTCGAGAGCA
TCGCAAGAGAGAAAACGCTGCTGAAACTCTGGTTCGCGGATCTGGAGCGTGTCGTGGAGCGAGGAAGGAGCGTCGTCATT
CCCCCGGAATAACCCGGTTTCGTCGGGAAAATTCAGTAGCTAGAATTTAGTAAACTAGCAGTGCTATCTCTTTATTTTTT
TGGCCTGAGATACAACATCATGCAAAACTGAGAAAGCCTACCATGGACATCAGTGTTGCCTTTTCTTGGATTATTT----
----GTTGCACTGTGAGGTGATGGGTGGTGGTCATGGTGTATGAA---------------ACATTTGCACTGAACGCAT-
---TTCCTTTGGCAATAAACTGTGTCCGATGAGTGATGAGTGCATTTGGAGGCTAAGTTCTGAACTCCTAATGCCGCAGC
TGTTGGTATCTAGCCAAGTGGCTTGATATTTTAGCCAGAATTAAACCATTCCTGGAGGCATCATCCCTTGCTCTGAATCC
TGATGCTGTCATGATTCATGTCATCGACACGGCGCCCC-AGCTTACAACCTCCACAGAACACAACACTGCGACTTTCATC
GACGAGCTCTCAGC-TTCATTTATCTAGCATG------------------------------------------------
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---------------------------------------------------------TCATATGTAC-------------
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>chr3A_1
TGGAGACCCTCACGCGTTTGCTTCAAGCATTGACCCAGGCATAAATCTTCCAGCTACCTGTTCCTGGCCCCTTCTTGATT
TCTTTCTATCCCCTGCCTGTCCGTGTAGTGCTCAGATTTGGTCAGCATGAAGGCATGAACA-AGCTGGCGCCTCTGGTGC
AGGATCCTGACGACTTGCGTCTCTGAAGGCGAGGAGGAAGCTTCTTTTCTCAGGTGAGATTGTGCTCTTGACGCTTCCCG
CTCATCT-GAATCTGTACCAGTTCTTCTCGGTCGTATGTTTCAGTTTCTTCAAGCCATGTTTAGTTGCTGTT-C-TTGAT
AGATGGTTGCTCCC------------AAGATCTTGCAGCGTTTCTCCAGGGATGATGCTATCTTTTGATCTGGTCTTGGT
TATATGACCACCCCTGTTTTC----------------------------------------TCATGGATGGAACAGTAAA
AGCTGCCTGCTGAATCATTGCTTTTCTGTTTGGTAAAAAAGGATCATCCTTG--ATACTACAGTAAGAAGATATGCTGCT
CATGTCTTGTTGTTGTACATATAACTCAATCTGATCCATTGACCTGATGATCTGTCCAGATATGCAATTTCTTGTTCATT
TCTTCTAGTTCATCACAGATGCGATTTAAGCATTTATTTCCCGAGGACACAGATTTCATTACACGAATGTACTACCGCTG
GTACTACTAGATGATAATGGGATGCTGTTAGTAAAAATGGGAAATAACT---TATTATCCAACTAACAAGGACTAGAATG
AGTGGCTGCTGGCATTGTTGCAATTTACATGCTTATCCGCACCTATTTTAGATTGGTTGATTTATGTTGCGGTATAGTGT
ATTCATTTCGCAGCGCTATAGTTCACCCTGATGCTTATGATTTGGAAAGTTAAACATATCATTACTTATTTTTCTTCTCT
TTGACTGAAGAAAGATGTAGTTTTCGTTCCTAACCATTCATATTTCCCCTTTCCATTTAGTGCTTGAATCTGCTAAACTT
CTAGCTCTCCTTGAAGATTTGTGAAACATGAAGCCGCCTTTGGAAAGGAACCCATCCAGGAAGCGCCATTCATGGTGGTG
GGATAGTCACATTAGCCCCAAGAACTCAAAATGGCTTGCAGAAAACCTCGAAGGTAAGCTGAGACTGTACCTGG--AATT
TCCTATATGA-TTTTTTTCTTAGTACTTGCTAGTAAACATACACCGTCAATGCATGCATAGGTACAGTACAATTTCTGAT
TGTATGTTGCACTGAGATGACATAAATAAATGAATAATAATGAAGAAA---AAGTACAAGTCTACAACACACTACTTTAT
TAGCCCTCAGATGCTTTTGATGTACATATGTTGCCTATGGTACAGTATCCCCATCTGATTCTTCACGGAGCT--------
-----------------------------GCAGAAGTTTTGATGGTTATTACTGTCACTCTAGGTTTAGGTGTGGTAGCC
TTATGTGACTGTTCATTGTGCATTTGCTCCAAAAACGAAGACAAATGATAAATACTATTGTTGATGCTTCCATAGTCAAG
TGAGAGAAATTCTATACATATTTTATTTTAGCAGAAATTGGCAGTGAGAAAAACAGAAAAAATGTTGATACTTTCCTTGA
CAATTACTGCTTTTTTATTTATTTA--TTTTTACTTTGTTGATCTTG--CTTCAAGCTCTTCTTTTATTACTCATTTTAC
TGGATTGGGGAGATAGATTGTAATTGAGTTATTTGATGTGTTGTCCTCGCTGCTGTTATCTGTTCTGTATGTTATCACTG
TTGTTCTTGTTCAAAGTAGCCTTATCCAACCTTTCCCTGAACTGGAATATGCAGAAATGGATAAGCAAGTGAAGGAAATG
GTGCAGCTTATTGAGGAAGATGGCGACTCCTTTGCAAAGAAAGCTCAAATGTATTATCAGAGGCGCCCAGTGCTCATCAC
CCATGTCGAGAACTTCTACCGGATGTACCGCGCTTTAGCTGAGCGCTACGACAATGTTACCGGTGAACTGCGCAAGAACA
TCCCTTCAAGGATGCAGTCTCAAGGATCTTTATCCGGTTCTGAGTTCGGTTCAGAGCTGCAAAGGTCGCCCACACCATCT
CCTGAGCCACAGAAGTCCTGGACAAGGGAGCAGAGCCCTAGAGCCGCCGGTTTCGACTTCTTTCTGAGCAATAAGAGCAA
TGACTCACCGTCCTCAAGGAAGGAGCCCGAGTCGGCTTCACAGTCAGAATCCGACATGAAGTCTGAGGATGGCGAGGATG
ATGGCATTGCCTACACATTGCACCAGAGGGTTCTCGAGCTCGAGGACGATCTCAATGCCGCGAACCGGAAGCTGCTTGAT
GCAAACGAAAAGCTCGAGGTTTTCGAGGAAAAGAGCCTGAGGTGCCATTGCGATTATATGGAAAATGGAAATGGCGCCGA
TTATGCTGCCAAAATTACAGACATTGATGGAGAGTTCGCGTCAACTAAGGAGAAGCTACAATCTTCAGAAGTGGAGATCG
ACAGTCTCCAAAGGAGGCTCGAAGATGCCGCAATTTTGTCCGAAGAGCACTCTAGGTTGCTGGAACAGAACAAGGGACTG
GAAGCTGAAATTGTCAGTCTGAAGGAAGAAATGGCTTCAGCCAGACGGCGTTTCGACGATAAAATTTCCAAGAGCGATGC
CGAGATCAGCAAGTACAAGCAAGAGCTTACCGCCACGTCTGAGAAGCTGCTGCAGGAGAAGTCCACCAACAGTGCAGAGG
TAGGTAAGCTGCAAGAGACAATCCAGATCGCCAGTCGTGAGCTGGAGAAAGTTTCCAAAGAGAAGTCCCTGGTGGAGGAC
CAGGTGAAGGAGCTGGACGAGGTGAACTTTGAAGCTGAAAGGCAGATGCAGGAGCTAGTCCATGCCGCCGAAATGCTCTC
AGAGGACAAGTTCAGTCATGAAGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGACCTGAAGCCGAGATTTGAAAGCA
TCGCAAGAGAGAAATCACTGCTGAAACTCTGGTTCGCGGATCTGGAGCGCGTCGTGGAGCGAGGAAGTAGCGTCGTCATT
CCCCCAGAATAACCTGGTTTTGTCGGGAAAATTCAGTAGCTAGAATTTAGAAAACTAGCAGTGCTATCTCTTTGTTTTTT
TGGCCTGAGGTACAACATCATGCAAAACTGAGAAAGCCTACCATGGACATCAGTGTTGCCTTTTCTTGGATTATTC----
----GTTGCACTGTGAGGTGATGGGTGGTGGTGGTGGTGTATGAA---------------ACATTTGCACTGAATGCAT-
---TTCCTTTGGCAATAAAATGTCTC-------TGATGAGTGCATTTGGAGGCTAAGTTCTGAACTCCTAATGCTGCAGC
TGTTGGTATCTAGCCAAGTGGCTCGATATGGTAGCCAGAATGAAACCATTCCTGGAGGCATCCATGCTCTGG----ATCC
TGATGCTGACATGATTCATGTCATCGACACGGCGCCCCGAACTTACAACATCCAGAGAACAGAACACTGCCACATTCATC
AGTGAGCTCTTAGCTTTCGTTTATTTAGCATGTTGGTTTGGCTGTTTTCACGACTAAATTCCAGCATCAGTGCTCTTCGT
TACAGATTAGGCACAGTTTCGATGGTTTTTTGTGCCCTGCCTAGAATCTGGCACTAAGTTGTTATCCTAACCCCAAGTGT
GAGTTATTTACCCAAAACCACCACACTTGGGGCTAGGGGAACGACTTGGTACCAGATTCTAGCCAGGGCACAAAAAACCA
CCGAAACTGAGCCTAATCTGATAAGCTCACGCAAACAGTGAAATTGACAAGTTGGTCCCACTTGTCATGCTGACGTGGCA
TGCTTGTGTGGACAATACGCTGACTTGGACGAGGGTCCCACTTGTAAAAGACTTAAGTGTTTATCTTTATTTTTTTTCTC
CTGGGCATTTCAACAAACACGTACTGGGCGACATCTGCACATCTGTGCACTTCACAACGCCGGACACGCTCGCCGCCTTT
AGTGGTCGACGGTCACCCGAGACCTGGCCGGCTGGCCGCGCTCGTGCTTGTGGTGTCCGCCGGGAGGCCTGGCCACGCCC
GTGCTCGTGCACTGTGGTGGCCATGGCCATGCTCGCGGTGACCGCTAGGTGCCCCTGGTCGCGCACGTACTGACGGTGGT
GCGCCACGGTGGAGCACTCTGCCCGTCCCAGTGCTCGCGGCGCCCGCCGGGATGCCTGGCCGCACCCGTGCTCGCGCACT
ATGGTGGCCATGGTTGTGCTCGCGGCGACTGCCAGGAGGCCCTGGTCGCGCCCGTATTGACGGAGGTGCGCCATGGTGGA
GCGCCCTGCTCGTCCTCGTGCTCGCGGCGCCCGTCGGGAGGCCCTGTTCGCGGCGGTGCCCCACGGTGGAGCGCCTTCGC
CGCACCTGCGCTCGACGCCACCTCCCGTTGCTCCCCATGAGCCACCGACACCACCCCCCGGAGCTCGACCCGCAGCTCGC
CGTTGGCCGCGGGCGCGCTAGCAGCGGCGACGCTCGACCATGCTGCCCTGCCGAGCACGAGCAGCCCGAGCCCACTGTCG
TCTCCACAAACACAGAAGAACGCCATGGACGCCACCCGAGTTTGTCACTGCCGCGGCTACATCTGCCGGCTCCATGGTGC
GCCCCCGCGCGACCTCGCCTGTGCGGACGGCCGCCTTCTTCACGCAGGGTCCTCTGCTCTCGGATGGAGGCGGCCGGCCC
GCAGTTCCTCTGGTCACTGCTCCGACCTGGCCATGGCATGCGGTGCCTTCTTCAATGACCAGATGATGTGCGCACTGAAG
GTGCTCGATTGAATGCTCCAGCGAAAAAATGTTGTGAAGAAGATGACTTTCTAGTCATTGACAGGTGGGGCCCGCATATT
ATTTGCCACATCGGCCGGTCAAACTTTTCGGTCTTCGCCATGTCAGCCCGACATGTGGGACCCACATGTCGGTTTGGCTG
TTTTCACGACCAAATTCCAGCATCAGTGCTCTTCGTTACAGATTAGGCACAGTTTCGATGGTTTTTTGTGCCCTGCCTAG
AATCTGGTACTAAGTTGTTACCCTAACCCAAGTATGGTGGTTTTGAGTAAATAGCTCTCATATGTACAAACATTTTGCAA
GTGAAAAAGACAGAGGACTTGGTTTCTACCCATGCACAAGTATAAAGAAAACATCACCATAAAACTAATTGGTCGTTGAC
ATAAAACAATGAAAATTTTACTTGGAAAACTGACATGAATTGATCATGTTAAAAACATTTACCGTGCTATCAATTTATAA
GTATCAAGCGGAATTTCAAATTCCTTTTACAAGTTCCAATAAATAAGGATTGGATCCAGGCATAGCAGAGTGACTTTGAA
CCAACTTACTACTACAACTGTACAGTCACACAACAGGCCTGGT-------------------------------------
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>chr3A_1965
TCTTCG--------------------------------------------------------------------------
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---GAGCCACAGAGGTCCTGGACAAGGGAGCAGAGCCCTAGAGCTGGCGGTTTCGACTTCTTTCTGAGCAACAAGAGAAA
TGATTCACCATCCTCAAGGAAGGAGCCTGAGTCGGCTTCAGAGTCAGAATCCGACATGAAGTCTGAAGATGGCGAGGATG
ATGGCTTTGCCTACACATTGCACCAGAGGGTTCTCGAGCTTGAGGACGATCTCAATGCTGCGAACCGGAAGCTGCTTGAT
GCAAACGAAAAGCTCGAGGTTTTCGAGAAGAAGAGCTTGAGGTGCCGTTGCGATTATAAGGAAAACGGAAATGGTGCCGA
TCAAGCTACAAAGATTACACATACCGAGGGAGATCTCACGTTGATTAGGGAGAAGCTACAGTATTCACAAGTGGAGATTG
ACAGTCTCAAAAGGAGGCTCGAAGACGCCGCAACTTTGTCAGAAGAGCACTCTAGGCTGTTGGAACAAAACAAGGAACTG
GAATCTGAAATTGTCAATCTGAAGGAAGAAATGGCTTCGGCAAGACTGTATTTCGACGACAAACTATCCGAGAGCAAGGC
CGAGATCAGCAAGTACATTCAAGAGCTTACCGCCGTGTACAAGAAGCTGCTGCGGGAGAGGCTCACCAACAGAGCACAGA
TGGGTAAGCTGCAAGAGACGATCCGGATCGCCGGTCATGAGCTGGAGAAAGTTTCTGAAGAGAAATCCCTAGTGGAGGAT
CATGTGAAGGAGCTGGAGGAGGCAAACGCCGAAGCCGAAAGGCGGAGGCAGGAGCTCATCCATGCCGCCGAAATGCTGTT
GGAGGACAAGTTCAGGCATGAGGCTGAGATCCTGACGATGCAGCAGAGCATCGAGGATCTGAAGCCGAAATTCGTGAGCA
TCGCCAGAGAGAAGTCGCTGCTGAAACTCTGGTTCGCTGATCTGGAGGTCGTTGTGGATCGAGGGAGGAGCGTCGTAGT-
-----GGAGTAGCCCGGTTTTCTTGAAAAT-TTCAGTAGCTAGAATTTAGCAAATTAGCAGTACTATCTCTTTG-TTTTT
TGGCCTGAGGTACAACATCATGCAAAACTGAGAAACCCTACCGTGGACATCAGTGTTGCCTTTTCCTGGAATATTTGTTG
CGTTGTTGCGTTGTGAGGTGATAGGTGTTGTTGGTGATGTATGTCCTGATGCAATGCGAGACATTTGCACTGGATGCATG
CATTTCATTTGGCAATCGAATGTCCC-------TGATGAGTGCATTTGGAAGCCAAGCCCTGAACTCAAAATGCTGCCGC
TGTTGATATAGCTAAGTG--------------------------------------------------------------
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>SNPs
------------------------------------------------------S--S-----------S----------
--------------------------------------------S-------S---------------------------
-----------------------------------S-------------------------S------------------
--------------S--------------------------------------------S--------------------
------S-------SSSSSSSSSSSS-----------S----------------S-S---------------S-------
------S-------------SS----------------------------------------S--------------S--
----------------S------S-------------------------------------------S------------
---------------S----S-------------------S--------S---------------------------S--
-------------------------------------------------S------------------------------
-----------S--S-----------------------------------------------------------------
-------------S-----------S---------------------S------S-------------------------
-------------S-----------------------------------------------S-----------------S
---------S---SSS----------------------------------------------------------------
-S--S---S--------S--------------------------------------------------------------
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-S--------S---------------------------------------------------------------------
-------------------------------------S----------SS------------------------------
--S--------------------------S-----S--------------------------------------------
------S------------------S------------------------------------------------------
--------SSS---------------------------------------------------------------------
--------------------------------------------------------S-S--S--S---------------
--------S---------S------SS-----------------------------S-----------------S-----
------------------------------------------------------------SS------------------
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-----------------------------------------------------------------------S-----S--
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--------S---------------------------------------------S-------------------------
-----------------------------S---------------------S--------------------S-------
--------S-------------------------------------S-----------S--S-----------------S
-------------------------------S--S---------------------------------------------
-----------------S--------------------S-----------------------------------------
---S---S--------------------S-----------------------S---------------------------
--------------S--------------S---S-------S------------S-------------------S-----
----------S--------------------S-----------------S----------------------SS------
----S-----------S-S--S--------------S-S-----------------------------------------
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-------------------------------------------------------------------------S------
------------------------S-------------------------------------------------------
-----------SS--------S-SS-----S----------------------SS--S----------------------
----S---------------------------------------------------------------------------
--------------------------S------SS---------------------------------------------
-------------------------------S---S-----S------------S------------S------------
-------------------------------------------------S------------------------------
---------S----------------------------------------------------------------------
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---------------------------------------------------------------S-----------S----
-----------------S----------S-S----------------S-----S--------------------------
-----------S---S-S--------------S--------------S-SS--S----SS---SSS--------------
--------S-----------------------------------------SS----------S-S------------S--
S---------S---------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_337
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-----------------------------------------------------------------------------GAG
AGATGGCTGCTCCCAAG---------------------------------------------------------------
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>reverse_2367
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----------------------------------------------TGATCTCAATGCGGCAAACC--------------
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>forward_1992
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----------------------------------------------------ATTATCAGAGGCGCCCAGTC--------
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>reverse_5520
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-------------------------------------------------------------------------------A
AAGCCGGTGTGAGAGGATG-------------------------------------------------------------
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--------------------------------
