AutoCloner

Multiple sequence alignment - TraesCS3B01G109700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G109700	chr3B	100.000	2498	0	0	1	2498	75709610	75712107	0.000000e+00	4614.0
1	TraesCS3B01G109700	chr3B	84.825	659	68	21	1	633	154367155	154366503	3.510000e-178	634.0
2	TraesCS3B01G109700	chr3B	82.081	692	59	27	1	633	25140422	25139737	4.730000e-147	531.0
3	TraesCS3B01G109700	chr3B	89.723	253	25	1	927	1179	519477199	519476948	3.100000e-84	322.0
4	TraesCS3B01G109700	chr3B	83.140	344	44	8	836	1179	519435566	519435237	4.040000e-78	302.0
5	TraesCS3B01G109700	chr3B	82.609	345	45	9	836	1179	519451229	519450899	8.740000e-75	291.0
6	TraesCS3B01G109700	chr3B	81.735	219	19	8	434	632	164570458	164570675	1.990000e-36	163.0
7	TraesCS3B01G109700	chr3D	90.313	1342	96	17	679	2004	48012574	48013897	0.000000e+00	1727.0
8	TraesCS3B01G109700	chr3D	79.354	867	108	44	679	1498	48015478	48016320	6.080000e-151	544.0
9	TraesCS3B01G109700	chr3D	80.323	681	72	24	1	633	118410885	118410219	2.260000e-125	459.0
10	TraesCS3B01G109700	chr3A	89.695	786	51	13	1730	2498	60243443	60244215	0.000000e+00	976.0
11	TraesCS3B01G109700	chr3A	91.416	699	40	12	1469	2163	60251974	60252656	0.000000e+00	941.0
12	TraesCS3B01G109700	chr3A	86.463	687	63	11	925	1587	60242505	60243185	0.000000e+00	726.0
13	TraesCS3B01G109700	chr3A	81.424	646	88	22	876	1498	60250812	60251448	1.330000e-137	499.0
14	TraesCS3B01G109700	chr3A	84.211	304	35	5	876	1179	514552904	514552614	1.460000e-72	283.0
15	TraesCS3B01G109700	chr3A	81.013	158	16	14	378	530	118584848	118584700	2.030000e-21	113.0
16	TraesCS3B01G109700	chr1B	89.818	658	36	11	1	633	329294600	329293949	0.000000e+00	815.0
17	TraesCS3B01G109700	chr1B	83.655	673	64	24	1	633	505106239	505105573	2.140000e-165	592.0
18	TraesCS3B01G109700	chr1D	81.930	891	120	29	836	1716	475825954	475825095	0.000000e+00	715.0
19	TraesCS3B01G109700	chr1A	86.053	674	79	12	836	1498	571680482	571679813	0.000000e+00	710.0
20	TraesCS3B01G109700	chr2B	86.269	670	47	20	1	629	719676	719011	0.000000e+00	686.0
21	TraesCS3B01G109700	chr2B	85.662	272	16	7	380	633	47616568	47616834	5.300000e-67	265.0
22	TraesCS3B01G109700	chr2B	90.909	44	4	0	636	679	66375613	66375656	2.680000e-05	60.2
23	TraesCS3B01G109700	chr5B	85.463	681	47	18	1	633	644470681	644470005	0.000000e+00	662.0
24	TraesCS3B01G109700	chr7B	82.317	656	76	21	1	634	630790688	630790051	1.320000e-147	532.0
25	TraesCS3B01G109700	chr7B	83.099	142	13	10	392	529	735539283	735539149	4.360000e-23	119.0
26	TraesCS3B01G109700	chr4B	80.994	684	67	31	1	634	96450116	96449446	3.740000e-133	484.0
27	TraesCS3B01G109700	chr4D	82.042	529	68	22	1	511	175070031	175069512	2.300000e-115	425.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G109700	chr3B	75709610	75712107	2497	False	4614.0	4614	100.0000	1	2498	1	chr3B.!!$F1	2497
1	TraesCS3B01G109700	chr3B	154366503	154367155	652	True	634.0	634	84.8250	1	633	1	chr3B.!!$R2	632
2	TraesCS3B01G109700	chr3B	25139737	25140422	685	True	531.0	531	82.0810	1	633	1	chr3B.!!$R1	632
3	TraesCS3B01G109700	chr3D	48012574	48016320	3746	False	1135.5	1727	84.8335	679	2004	2	chr3D.!!$F1	1325
4	TraesCS3B01G109700	chr3D	118410219	118410885	666	True	459.0	459	80.3230	1	633	1	chr3D.!!$R1	632
5	TraesCS3B01G109700	chr3A	60242505	60244215	1710	False	851.0	976	88.0790	925	2498	2	chr3A.!!$F1	1573
6	TraesCS3B01G109700	chr3A	60250812	60252656	1844	False	720.0	941	86.4200	876	2163	2	chr3A.!!$F2	1287
7	TraesCS3B01G109700	chr1B	329293949	329294600	651	True	815.0	815	89.8180	1	633	1	chr1B.!!$R1	632
8	TraesCS3B01G109700	chr1B	505105573	505106239	666	True	592.0	592	83.6550	1	633	1	chr1B.!!$R2	632
9	TraesCS3B01G109700	chr1D	475825095	475825954	859	True	715.0	715	81.9300	836	1716	1	chr1D.!!$R1	880
10	TraesCS3B01G109700	chr1A	571679813	571680482	669	True	710.0	710	86.0530	836	1498	1	chr1A.!!$R1	662
11	TraesCS3B01G109700	chr2B	719011	719676	665	True	686.0	686	86.2690	1	629	1	chr2B.!!$R1	628
12	TraesCS3B01G109700	chr5B	644470005	644470681	676	True	662.0	662	85.4630	1	633	1	chr5B.!!$R1	632
13	TraesCS3B01G109700	chr7B	630790051	630790688	637	True	532.0	532	82.3170	1	634	1	chr7B.!!$R1	633
14	TraesCS3B01G109700	chr4B	96449446	96450116	670	True	484.0	484	80.9940	1	634	1	chr4B.!!$R1	633
15	TraesCS3B01G109700	chr4D	175069512	175070031	519	True	425.0	425	82.0420	1	511	1	chr4D.!!$R1	510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
651	816	0.248215	CCGAATCAACGGCAATCTGC	60.248	55.0	0.0	0.0	46.2	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1933	2835	0.107116	GTAGAGACCGAGCTCCTCCA	60.107	60.0	8.47	0.0	35.49	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	35	9.612620	CACTATGTTTTTGGAACTTCTGAATAC	57.387	33.333	0.00	0.00	0.00	1.89
68	78	9.362151	AGGAACAATTATTAAACTCCAGAACAA	57.638	29.630	0.00	0.00	0.00	2.83
83	93	7.763985	ACTCCAGAACAATTTTTGAAATTTCGT	59.236	29.630	13.34	0.68	0.00	3.85
291	317	8.017418	TGGGAAAGTATTTTGAAAGTGTGAAT	57.983	30.769	0.00	0.00	39.27	2.57
370	400	8.484641	TTGAACAATTTATGAGCAACACAAAA	57.515	26.923	0.00	0.00	28.56	2.44
518	661	0.674895	CAGAGAAAACCGGCTGGGAG	60.675	60.000	18.00	0.00	40.75	4.30
634	799	1.734377	GCGGCAAATAGGAAAAACCCG	60.734	52.381	0.00	0.00	40.05	5.28
635	800	1.813786	CGGCAAATAGGAAAAACCCGA	59.186	47.619	0.00	0.00	40.05	5.14
636	801	2.229302	CGGCAAATAGGAAAAACCCGAA	59.771	45.455	0.00	0.00	40.05	4.30
637	802	3.119280	CGGCAAATAGGAAAAACCCGAAT	60.119	43.478	0.00	0.00	40.05	3.34
638	803	4.430007	GGCAAATAGGAAAAACCCGAATC	58.570	43.478	0.00	0.00	40.05	2.52
639	804	4.081917	GGCAAATAGGAAAAACCCGAATCA	60.082	41.667	0.00	0.00	40.05	2.57
640	805	5.474825	GCAAATAGGAAAAACCCGAATCAA	58.525	37.500	0.00	0.00	40.05	2.57
641	806	5.347635	GCAAATAGGAAAAACCCGAATCAAC	59.652	40.000	0.00	0.00	40.05	3.18
642	807	4.957759	ATAGGAAAAACCCGAATCAACG	57.042	40.909	0.00	0.00	40.05	4.10
650	815	3.903876	CCGAATCAACGGCAATCTG	57.096	52.632	0.00	0.00	46.20	2.90
651	816	0.248215	CCGAATCAACGGCAATCTGC	60.248	55.000	0.00	0.00	46.20	4.26
660	825	4.704007	GCAATCTGCCGCAGAATG	57.296	55.556	27.38	27.38	44.04	2.67
671	836	3.494378	CAGAATGCGGCAGACAGG	58.506	61.111	9.25	0.00	0.00	4.00
672	837	1.078918	CAGAATGCGGCAGACAGGA	60.079	57.895	9.25	0.00	0.00	3.86
673	838	0.463295	CAGAATGCGGCAGACAGGAT	60.463	55.000	9.25	0.00	0.00	3.24
674	839	0.254178	AGAATGCGGCAGACAGGATT	59.746	50.000	9.25	0.00	0.00	3.01
675	840	1.098050	GAATGCGGCAGACAGGATTT	58.902	50.000	9.25	0.00	0.00	2.17
676	841	1.474077	GAATGCGGCAGACAGGATTTT	59.526	47.619	9.25	0.00	0.00	1.82
677	842	1.098050	ATGCGGCAGACAGGATTTTC	58.902	50.000	9.25	0.00	0.00	2.29
690	855	2.095461	GGATTTTCCTTCTCACAGGCC	58.905	52.381	0.00	0.00	33.35	5.19
713	878	4.218265	TGAACGCATGTTTCGATGAAAAG	58.782	39.130	0.00	0.00	38.78	2.27
715	880	4.685169	ACGCATGTTTCGATGAAAAGAT	57.315	36.364	0.00	0.00	33.14	2.40
722	887	5.253330	TGTTTCGATGAAAAGATAAGGCCT	58.747	37.500	0.00	0.00	33.14	5.19
740	905	3.052082	CAACAGCCCTGTCCAGCG	61.052	66.667	0.79	0.00	44.13	5.18
758	923	0.808755	CGTAGCCCAACCAATCAACC	59.191	55.000	0.00	0.00	0.00	3.77
763	928	1.323412	CCCAACCAATCAACCAACGA	58.677	50.000	0.00	0.00	0.00	3.85
776	941	1.271379	ACCAACGATAGCGAACTGTGA	59.729	47.619	7.69	0.00	41.64	3.58
784	949	2.885644	CGAACTGTGATCGGCCCG	60.886	66.667	0.00	0.00	36.68	6.13
789	954	2.758327	TGTGATCGGCCCGCTAGT	60.758	61.111	0.00	0.00	0.00	2.57
800	965	1.731613	CCGCTAGTTCAACGCGTCA	60.732	57.895	14.44	0.00	44.92	4.35
821	986	0.527565	CCCAATGGTTTGCTCCGAAG	59.472	55.000	0.00	0.00	0.00	3.79
834	999	5.801350	TGCTCCGAAGAATAATCAACAAG	57.199	39.130	0.00	0.00	0.00	3.16
872	1037	1.004185	CGATCACGATACGAACCGACT	60.004	52.381	0.00	0.00	42.66	4.18
965	1144	4.129737	ACCCGATCTCCACGCACG	62.130	66.667	0.00	0.00	0.00	5.34
998	1177	0.511653	GAACCAAGGAAACGAGCGAC	59.488	55.000	0.00	0.00	0.00	5.19
1227	1415	4.776322	CCGCAACTCCATCCGCCA	62.776	66.667	0.00	0.00	0.00	5.69
1440	1643	3.969352	GCGAGATCAAGATGTACTACGTG	59.031	47.826	0.00	0.00	0.00	4.49
1488	1692	5.704888	CGCCTCGATTATCTCTATGACTTT	58.295	41.667	0.00	0.00	0.00	2.66
1627	2425	9.875675	GCTCTAATGAAGATCATGTTGTTATTC	57.124	33.333	0.00	0.00	37.15	1.75
1687	2489	8.413229	TCTCAAACTAAAAGTTGAAATTCTGGG	58.587	33.333	0.00	0.00	38.66	4.45
1696	2498	1.071542	TGAAATTCTGGGCAGTGACGA	59.928	47.619	0.00	0.00	0.00	4.20
1715	2518	3.815401	ACGACAGCTTGAAGCACTATTTT	59.185	39.130	20.45	0.00	45.56	1.82
1719	2522	6.128553	CGACAGCTTGAAGCACTATTTTTAGA	60.129	38.462	20.45	0.00	45.56	2.10
1791	2683	6.204108	CCACCGTCAAATTATTCATAGGGTAC	59.796	42.308	0.00	0.00	0.00	3.34
1855	2756	7.549615	TGCAATACTCATCTCAATTCTCAAG	57.450	36.000	0.00	0.00	0.00	3.02
1908	2810	1.375013	GCGTGCCCGACTTTAGGAA	60.375	57.895	0.00	0.00	35.63	3.36
1986	2888	3.373130	CGTTCCCCGAATAGTTTTTCTCC	59.627	47.826	0.00	0.00	39.56	3.71
2046	2948	3.138304	CTCCGTTCCACAATTCTTGTCA	58.862	45.455	0.00	0.00	43.23	3.58
2053	2955	8.240682	CCGTTCCACAATTCTTGTCATAATTTA	58.759	33.333	0.00	0.00	43.23	1.40
2117	3019	8.863086	AGCATAAACATTATATTGCACTTCCAT	58.137	29.630	0.00	0.00	0.00	3.41
2196	3098	1.072331	ACCACACAAGCGGAAGAAGAT	59.928	47.619	0.00	0.00	0.00	2.40
2203	3105	3.499918	ACAAGCGGAAGAAGATTTGACTG	59.500	43.478	0.00	0.00	0.00	3.51
2239	3141	3.256631	CCTGCCAAAACTAGCACATCTTT	59.743	43.478	0.00	0.00	34.68	2.52
2248	3150	6.743575	AACTAGCACATCTTTAACATGACC	57.256	37.500	0.00	0.00	0.00	4.02
2266	3168	3.380004	TGACCCACATCAACAAAACTGAC	59.620	43.478	0.00	0.00	0.00	3.51
2269	3171	3.253188	CCCACATCAACAAAACTGACGAT	59.747	43.478	0.00	0.00	0.00	3.73
2284	3186	4.405680	ACTGACGATTATCACATCCCAGAA	59.594	41.667	0.00	0.00	30.57	3.02
2302	3219	6.060788	CCCAGAATTTTCCCAAATTTCACAA	58.939	36.000	0.00	0.00	41.79	3.33
2425	3344	2.969821	AAGTATGGCCCAACTGAACA	57.030	45.000	7.79	0.00	0.00	3.18
2454	3373	1.744320	AAAACCCAAAGTGGAGCCGC	61.744	55.000	0.00	0.00	40.96	6.53
2480	5596	1.605451	TTCCGGGAGAAGAGCGTCA	60.605	57.895	0.00	0.00	0.00	4.35
2493	5609	2.089854	GCGTCATGCAAGGTAGTGG	58.910	57.895	0.00	0.00	45.45	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
308	338	6.706295	TGTTCCTGTTTCAAATTTTGTTCCT	58.294	32.000	8.89	0.00	0.00	3.36
643	808	4.704007	CATTCTGCGGCAGATTGC	57.296	55.556	30.40	0.00	40.39	3.56
644	809	4.704007	GCATTCTGCGGCAGATTG	57.296	55.556	34.00	34.00	40.39	2.67
653	818	2.758089	CCTGTCTGCCGCATTCTGC	61.758	63.158	0.00	0.00	40.69	4.26
654	819	0.463295	ATCCTGTCTGCCGCATTCTG	60.463	55.000	0.00	0.00	0.00	3.02
655	820	0.254178	AATCCTGTCTGCCGCATTCT	59.746	50.000	0.00	0.00	0.00	2.40
656	821	1.098050	AAATCCTGTCTGCCGCATTC	58.902	50.000	0.00	0.00	0.00	2.67
657	822	1.474077	GAAAATCCTGTCTGCCGCATT	59.526	47.619	0.00	0.00	0.00	3.56
658	823	1.098050	GAAAATCCTGTCTGCCGCAT	58.902	50.000	0.00	0.00	0.00	4.73
659	824	0.960364	GGAAAATCCTGTCTGCCGCA	60.960	55.000	0.00	0.00	32.53	5.69
660	825	1.803289	GGAAAATCCTGTCTGCCGC	59.197	57.895	0.00	0.00	32.53	6.53
670	835	2.095461	GGCCTGTGAGAAGGAAAATCC	58.905	52.381	0.00	0.00	40.02	3.01
671	836	2.751806	CAGGCCTGTGAGAAGGAAAATC	59.248	50.000	25.53	0.00	40.02	2.17
672	837	2.376518	TCAGGCCTGTGAGAAGGAAAAT	59.623	45.455	31.58	0.00	40.02	1.82
673	838	1.774254	TCAGGCCTGTGAGAAGGAAAA	59.226	47.619	31.58	5.39	40.02	2.29
674	839	1.434188	TCAGGCCTGTGAGAAGGAAA	58.566	50.000	31.58	5.96	40.02	3.13
675	840	1.072331	GTTCAGGCCTGTGAGAAGGAA	59.928	52.381	31.58	13.65	40.02	3.36
676	841	0.687354	GTTCAGGCCTGTGAGAAGGA	59.313	55.000	31.58	7.59	40.02	3.36
677	842	0.671781	CGTTCAGGCCTGTGAGAAGG	60.672	60.000	31.58	19.35	40.63	3.46
690	855	3.454042	TTCATCGAAACATGCGTTCAG	57.546	42.857	9.65	3.93	32.91	3.02
701	866	5.496556	TGAGGCCTTATCTTTTCATCGAAA	58.503	37.500	6.77	0.00	0.00	3.46
722	887	2.431683	GCTGGACAGGGCTGTTGA	59.568	61.111	1.01	0.00	45.05	3.18
740	905	1.917872	TGGTTGATTGGTTGGGCTAC	58.082	50.000	0.00	0.00	0.00	3.58
758	923	2.214244	CGATCACAGTTCGCTATCGTTG	59.786	50.000	0.00	0.00	35.81	4.10
763	928	0.249489	GGCCGATCACAGTTCGCTAT	60.249	55.000	0.00	0.00	35.31	2.97
776	941	1.153429	GTTGAACTAGCGGGCCGAT	60.153	57.895	33.44	28.86	0.00	4.18
784	949	0.163146	GGTTGACGCGTTGAACTAGC	59.837	55.000	25.18	12.41	0.00	3.42
789	954	0.309302	CATTGGGTTGACGCGTTGAA	59.691	50.000	15.53	6.91	0.00	2.69
821	986	4.098416	GCGTCCAAGCTTGTTGATTATTC	58.902	43.478	24.35	3.50	0.00	1.75
891	1056	1.131303	TTCGGGCTTCCCTTCCTTGA	61.131	55.000	0.00	0.00	42.67	3.02
965	1144	0.672401	TGGTTCGCTTCGTGGATTCC	60.672	55.000	0.00	0.00	0.00	3.01
1176	1355	3.358076	GAGTGCGTCTCGGGGAAGG	62.358	68.421	0.00	0.00	33.25	3.46
1200	1388	2.992114	AGTTGCGGCTCCTCGTCT	60.992	61.111	0.00	0.00	0.00	4.18
1227	1415	4.778143	GAATGCCGGTCGCCCAGT	62.778	66.667	1.90	0.00	36.24	4.00
1326	1523	2.032681	GCTTGCACTTCCTCGGGT	59.967	61.111	0.00	0.00	0.00	5.28
1627	2425	2.320781	AGATTCATGGACCCGGAGTAG	58.679	52.381	0.73	0.00	0.00	2.57
1687	2489	0.510359	CTTCAAGCTGTCGTCACTGC	59.490	55.000	0.00	0.00	45.49	4.40
1696	2498	7.693969	ATCTAAAAATAGTGCTTCAAGCTGT	57.306	32.000	11.57	0.00	42.97	4.40
1731	2623	5.668471	TCACTCATGCCAATTGTTCAAAAA	58.332	33.333	4.43	0.00	0.00	1.94
1818	2719	4.280425	TGAGTATTGCATTGTCCTTTTGCA	59.720	37.500	0.00	0.00	44.12	4.08
1819	2720	4.808558	TGAGTATTGCATTGTCCTTTTGC	58.191	39.130	0.00	0.00	36.91	3.68
1820	2721	6.860080	AGATGAGTATTGCATTGTCCTTTTG	58.140	36.000	0.00	0.00	0.00	2.44
1875	2777	3.242316	GGGCACGCGTCTTTTATCTAAAG	60.242	47.826	9.86	0.00	43.82	1.85
1892	2794	1.723220	GTCTTCCTAAAGTCGGGCAC	58.277	55.000	0.00	0.00	33.95	5.01
1908	2810	3.369242	AGTAGGGTTCTAGCTTCGTCT	57.631	47.619	0.00	0.00	0.00	4.18
1933	2835	0.107116	GTAGAGACCGAGCTCCTCCA	60.107	60.000	8.47	0.00	35.49	3.86
1937	2839	1.941975	GTAGTGTAGAGACCGAGCTCC	59.058	57.143	8.47	0.00	35.49	4.70
2066	2968	9.829507	CTACTCCTCTGTTTCATAATTCTTGAT	57.170	33.333	0.00	0.00	0.00	2.57
2117	3019	9.362151	ACCTAATTTTTGGAGTTTGAGTTGATA	57.638	29.630	0.00	0.00	0.00	2.15
2196	3098	7.093945	GGCAGGTTTTCTTATTATCCAGTCAAA	60.094	37.037	0.00	0.00	0.00	2.69
2203	3105	7.611770	AGTTTTGGCAGGTTTTCTTATTATCC	58.388	34.615	0.00	0.00	0.00	2.59
2239	3141	5.596361	AGTTTTGTTGATGTGGGTCATGTTA	59.404	36.000	0.00	0.00	36.83	2.41
2248	3150	3.961477	TCGTCAGTTTTGTTGATGTGG	57.039	42.857	0.00	0.00	34.09	4.17
2266	3168	6.294176	GGGAAAATTCTGGGATGTGATAATCG	60.294	42.308	0.00	0.00	0.00	3.34
2269	3171	5.836705	TGGGAAAATTCTGGGATGTGATAA	58.163	37.500	0.00	0.00	0.00	1.75
2335	3254	4.338118	CCCTCAAAAATCGCTATAGGCAAA	59.662	41.667	1.04	0.00	41.91	3.68
2336	3255	3.882888	CCCTCAAAAATCGCTATAGGCAA	59.117	43.478	1.04	0.00	41.91	4.52
2337	3256	3.135712	TCCCTCAAAAATCGCTATAGGCA	59.864	43.478	1.04	0.00	41.91	4.75
2338	3257	3.740115	TCCCTCAAAAATCGCTATAGGC	58.260	45.455	1.04	0.00	37.64	3.93
2393	3312	3.740832	GGCCATACTTTCAAACAAACAGC	59.259	43.478	0.00	0.00	0.00	4.40
2469	3388	0.322975	ACCTTGCATGACGCTCTTCT	59.677	50.000	0.00	0.00	43.06	2.85
2480	5596	3.399046	TCCGCCACTACCTTGCAT	58.601	55.556	0.00	0.00	0.00	3.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.