>input_sequence_78268
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----------------------------------------------------------ATGCGGCGCGAGGGACGGCAGC
GAGGGTGGGTGCGTGTGTACGACCGCGCCGTGGTGGACCCGGAGGGCAAGCGCCGCGCCGTGCACGTCGTGGACGGCCCG
GTGGTGGCCAACGGCGGCTTCATCCGGGCGCCGCGGAAGCCGACCAACCAGTCCAAGTCCGGCGGCCTCCGCGCCCTTCC
CCGAGACGCACTCGTTC---------AAGACGAGGAGCCGCAACTCCATCCGCCACTGGGCGACCGGCATTCTGGGTACT
ACTACACAACGACGTGCCAGTCACCGTTCAGATTCGAGGCCGCGCCGTATGGA---------TGGAGGTACGACGCCTTC
GCACCCGAGGAAGTGCAAGCTCCTCGCCCGCCGCCGGCAGCGGCGCGTTCTGGGG---GGAGATCGGCGTG---CAAGGG
GAGCCGCAAGTTCAAGCACAGCGAGATCAAGATGTACTACGTGGACGCGGCCGATGACGTCGATGGGCGCCTCGATTATC
TCTA-TGACTTTGATTCATGA-----------------------------------------------------------
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---------------------------
>chr3B_1_TraesCS3B01G109700
TAAAAATCACTATG-TTTTTGGAACTTCTGAATACAAT---AAAAA---A--GGAACAATTATTAAACTCCAGAACAATT
TTTGAAATTTCGTACATATTTTGGAATTCTTGAAAATAAGAATCAAAAGAAAAAAAATGAGTAGATTAAGAATTACAAAA
GAAACAAAGAA---GATAAA-----AAAG----AGAAATAAAAAATCAACTAGGCGAACAAAAAA-TTAAAATCAAGAAC
A--ATTTTTA-AATTTGTGAACAAAAATTTCAAAAAACATATTTTGAACTTTGGGAAAGTATTTTGAAAGTGTGAATATT
TTTTT----AAAAAATTAGGAACAAAATTTGAAACAGGAACATTCCGTGAAGTTTTGAACAATTTATGAGCAACACAAAA
AAA-----TTCGAAAAAACGAAAATAAACTTGAAAACAGGAAAAATAAAAAC-----------------------AAAAA
AATGAAAAAG--------------------AA-----------AGAAAAAGAAACAGAAAAAGGCAA-------------
-----------------------AAAAAAA------------------CGGTTCAGGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCGGCTGGGAGCCAGCTAGA-----AA----------------TGGCTGATAAGTTTAACGGGCTGGCCC
ATCCCGAACGGTCGTCGCTG-TCCCCGTGTGCGTCGCTGCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACCCGA
ATCAACGGCAATCTGCCGCAGAATGCGGCAGACAGGATTTTCCTTCTCACAGGCCTGAACGCATGTTTCGATGAAAAGAT
AAGGCCTCAACAGCCCTGTCCAGCGTAGCCCAACCAATCAACCAACGATAGCGAACTGTGATCGGCCCGCTAGTTCAACG
CGTCAACCCAATGGTTTGCTCCGAAGAATAATCAACAAGCTTGGACGCCAAGTTCCCGATCACGATACGAACCGACTTGC
ACGAACCCGTGGCCGTCAAGGAAGGG---AAGCCCGAAGCC-GGCCGTGCTGTAT------GTATAAATAGGCCACCGGC
AGACCCGA----TCTCCACGCACGGAATCCACGAAGCGAACCAAGGAAACGAGCGACGATGCGGCGCGAGGGACGGCAGC
GAGGGTGGGTGCGTGTGTACGACCGCGCCGTGGTGGACCCGGAGGGCAAGCGCCGCGCCGTGCACGTCGTGGACGGCCCG
GTGGTGGCCAACGGCGGCTTCATCCGGGCGCCGCGGAAGCCGACCAACCAGTCCAAGTCCGGCGGCCTCCGCGCCCTTCC
CCGAGACGCACTCGTTC---------AAGACGAGGAGCCGCAACTCCATCCGCCACTGGGCGACCGGCATTCTGGGTACT
ACTACACAACGACGTGCCAGTCACCGTTCAGATTCGAGGCCGCGCCGTATGGA---------TGGAGGTACGACGCCTTC
GCACCCGAGGAAGTGCAAGCTCCTCGCCCGCCGCCGGCAGCGGCGCGTTCTGGGG---GGAGATCGGCGTG---CAAGGG
GAGCCGCAAGTTCAAGCACAGCGAGATCAAGATGTACTACGTGGACGCGGCCGATGACGTCGATGGGCGCCTCGATTATC
TCTA-TGACTTTGATTCATGATTC--------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------CCCCCTTTGTTTTCCA-----AAGTTCAGCAAGAGGAGTTGTAAAC---TACTGTAGATC
CGATGGATGTGTGTATCTTTGTCCCTTCCGTTAT---------CAATGCAGGTGCTTGCTCTAATGAAGATCATGT----
-----------------TGTTATTCTACTCCGG-GTCC--AT-GAATCTTTAAACGTGTTGATCTCAAACTAAAAGTTGA
AATTCTGGGCAGTGACGACAGCTTGAAGCACTA-TTTTTAGATTCTTTATG-----------------------------
------------------------------------------------------------AATTTTTGAACAATTGGCAT
GAGTGAATATCAAATGTCCACCGTCAAATTATTCATAGGGTACGATTA-------AACTGA--TTTTTTTTTTTTTTTTG
CAAAAGGACAATGCAATACTCATCTCAATTCTCAAGGTAAATTTTTTTGGCACT-TCTTTAGATAAAAGACGCGTGCCCG
ACTTTAGGAAGACGAAGCTAGAACCCTACTAGGGTGGAGGAGCTCGGTCTCTACACTACATTCTCCGTTCCCCGAATAGT
TTTTCTCCCACTGTTAGTGGTTTTAGCTCGGCAAAAATTATACTCCCTCCGTTCCACAATTCTTGTCATAATTTAAAATA
AAACTACATCAAGAATTATGAAACAGAGGAGTAGCATAAACATTATATTGCACTTCCATATCAACTCAAACTCCAAAAAT
TAGGTTGATTATTTCTGCACATATATTAAGACAAGTTACCACACAAGCGGAAGAAGATTTGACTGGATAATAAGAAAACC
TGCCAAAACTAGCACATCTTTAACATGACCCACATCAACAAAACTGACGATTATCACATCCCAGAATTTTCCC-------
--------AAATTTCACAAGAAATTAAAA--TTTTCTAGAAATACTTATGTTTTTTGCCTATAGCGATTTTTGAGGGATT
TTTAATTTAACTATAATTTGACTAAGAGACTGCTGTTTGTTTGAAAGTATGGCCCAACTGAACATTGGGGATTAAAACCC
AAAGTGGAGCCGCCAGCACGTTCCGGGAGAAGAG----------------------------------------------
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-----------------------------------------------------------------------CGTCATGCA
AGGTAGTGGCGGA-------------------------------------------------------------------
---------------------------
>chr3B_1
TAAAAATAACTAAGTTTTTTGGAACTTCTGAACAGAAT---AAAACAACA--GGAACAATTATTAAAATCCAGAATATTT
TTTGAAATTTCGAACAAATTTTGAAATTCTGAAAAATAAAAATCAAAAGAAG--AAACGAGTAGATTAAGAATTACAAAA
GAAATAGAC-A---AAAAAA-----AGAG----AAATACAAAAAATCAACTAGGCGAACAAAAAT-TTGAAATCAAGAAC
ATTTTTTTAA-AATTAGTGAACAAAAATTTTGAATAACATATTTTGAACTTCTGAACACTACTTTGAAAGTGTGAACA--
--TTTT-TACAAAATTTGGGAACAAAATTTGAAACAAGAACCTTTCTTGAAGTTTTGAACAATTTATTAGGAACTCAAAC
-T--TTTTTT-GAAAATACGAAAATAAACTTGAAAACAGAAAAAAGAAAAAC-----------------------AAAAA
------AAAG--------------------AA-----------AGAAAAAGAAACAGGAAAAGGAAA-------------
-----------------------AAAAAGGAAAGGAAAAAAGAAAAAACGGTTTAGGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCGGCTAGAAAGTTCCCCAAACCGGAA----------------TGGCTGATAATTTTAACGGGCTGGCCC
ATCCCGAACGGTCATCGCTG-TACCCGTGTGCGTCGCTCCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACC---
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---------------------------
>chr3B_1
TAAAAATCACTAAGTTTTTTGGAACTACTGAACAAAATTTAAA-AAA--A--AGGAAATTTTTTTAACTTCAGAACATTT
TTTGAAATTCCGAACAAATTTTGGAATTATGAAAAATAAAAATAGAAAGAAAAAAAACGAGTAGATTAAGAATTACAAAA
GAAATAGAGAACAGAAAAAA-----AAAG----AAATACAAAAATTCAACTAGGTGAACAAAAAGTTTGAAATCAAGAAC
A--TTTTTTA-AATTTCGGTACAAAAATTTAAAAGAACATATTTTGAGCTTCTGAACAGTATTTTGAAAGTGTGAACA--
--TTT----AAAAAAATGGGAACAAAATTTGAAACAGGAACATTTCATGAAGTTTTGAACAATTTATGAGCAACACAACT
ATTATTTTTT-GAAAAAACGAAAATAAACTTGAAAACAGAAAAAATGAAAAATG-----------------------AAA
AATGAAAAAG--------------------AA-----------AGAAAAAGAAACAGAAAATGAAAATGAAAAATAAACA
-------GGAAAACAAAGAAGAAGAAAAAC------------------CGGTTCACGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCGGCTGGGAACCAGCTAGA-----AAGTTCCCAAAACCGGAATGGCTGAAATTTTTAACGGGCTGGCCC
ATCTCGAACGGTCGTCGGTG-TTCCCGTGTGCGTCGCTCCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACC---
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---------------------------
>chr3D_1
TAAAAATCACTAAGTTTTTTGGAACTTCCAAAGAAAAT---AAAAA---AACAGGAACAATATTTAACTTCAGATTTTTT
TTGGAAATTTCGAACAAATTTGGAAATTCTGAAAAATAAAATTAGAAAGAAAAAT-ATGAGTAGATTAAGAATTACAAAA
GAAATAGAGAA---AAGAAA-----AAAAAGA-AAATACAAAAAATTAACTAGGTGAACAAC-----TGAAATCAAGAAC
A--TTTTTTTTAATTTCTG---AAAAAATTAAAAGAACATATTTTAAACTTCTGAACAATATTTTGAAAGTGTGAACA--
--TTTT-TAAAAAATTTGGGAACACAATTTGAAACAGGAACAGTTCGTGAAGTTTTGAACAATTTATGAGCAACAAT---
TT--TTTTTT-GGAAAAACGAAAATAAACTTGAAAACAGAAAAAACAAAAAC-----------------------GAAAA
AAAGAAAAAG--------------------AA-----------AGAAAAAGAGACAGAAAAAGGAAAA-------AAACA
-------GGAAAAGAAAAAAGAAAGAAACT-------------------GGTTCAGGAACCTCCTAGAAGGTTCCCAAAA
CGAGAGAAAACCGGTTGCGAACCAGCTAGA-----AAGTTCCCAAAACCGGAATGGCTGAGAATTTTAACGGGCTGGCCC
ATCCCGAACAGTTGTCGGAT-TCCCCCCTGTGCTCGCTGCGGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAATCC---
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---------------------------
>chr1B_1
TAAAAATCACTATGTTTTTTGGAACTTCTGAATAGAAT---AAAAAA--A--GGAACAATTATTAAACTCCAAAACATTT
TTTCAAATTTCGAACATATTTTGGAATTCTTGAAAATAAAAATCAAAAG--AAAAAATGAGTAGATTAAGAATTACAAAA
GAAATAAAGAA---AAGGAA-----AAAG----AGAAATAAAAAATCAACTAGGCGAACAAAAAA-TTAAAATCGAGAAC
A--TTTTTTA-AATTTGTGAACAAAAATTTCAAAAAACATATTTTTAACTTTAGAAAAGTATTTTGAAAGTGTGAACA--
--TTCT--GAAAAAATTGGGAACAAAATTTGAAACAGGAACATTTCGTGAAGTTTTGAACAATTTATGAGCAACATAATC
TT--TTTTTT-GAAAAAACAAAAATAAACTTGAAAACAGGAAAAATAAAAAC-----------------------GAAAA
------AAA----------------------------------TGAAAAAGAAACAGAAAAAGGCAAA-------AAAAG
-----------------AAAAAGAAAAAAA------------------CGGTTCAGGAACCTCCTAGAAGGTTCCCAGAA
CCAGAGAAAACCGGCTGGGAACCAGCTAGA-----AAGTTCCCAAAACCGGAATGGCTGATAAGTTTAATGGGCTGGCCC
ATCCCGAACGGTCGTCGCTG-TCCCCGTGTGCGTCGCTGCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAATACC---
--------------------------------------------------------------------------------
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---------------------------
>chr1B_1
TAAAAATAACTATA-TTTTTGGAACTTCTGAACAGAAC---AAAAAAACA--GGAACAATTATTAAACCCCAGAACATTT
TTTGAAATTTCGAACAAATTCTGGAATTCTGCAAAATAAAAATCGAAAG--AAAAAACGAGTAGACTAAAAATTACAAAA
GAAATAGAGAA---AAAAAA-----AGAG----AAATACAAAAAATAAACTAGGTGAACAAAAAATTTGAAATCAAGAAC
A--TTTTTTA-GATTTTTGAACAAAAATTGGAAATAACATATTTGGATCTTCTGAACACTATTTTGAAAGTGTGAACATG
-TTTT----AAAAAATTGGGAACAAAATTTGAAACAGGAACATTTCTTGAAGTTTTAAACAATTTATGAGCAACTCAAAC
-T--TTTTTT-GAAAAAACAAAAATAAACTTGAAAACAGAAAAAAGGAAAATG----AAAG-------------------
------AAAG--------------------AA-----------AGAAAGAGAAACAGAAAAAGAAAAA-------AAACA
-------GGAAAATAAAAAAAGAAAAAAAC------------------CGGTTTAGGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCGGCTGAGAACCAGCTAGA-----AAGTTCCCAAACCCGGAATGGCTGATAATTTTAACGGGCTGGCCC
ATCCCGAACGGTCATCGGTG-TACCTGTGTGCGTCGCTCCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACC---
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---------------------------
>chr2B_1
TAAAAATCACTATGTTTTTTGGAATTTCTGAATAGAAT---AA-AAA--A--GGAAAAATTATTAAACTCCAGAACATAT
TTTGAAATTTCGAACATATTTTGGAATTCTGGAAAATAAAAATCAAAAG--AAAAAATGAGTAGATTAGGAATTACGAAA
TAAATAGAGAA---AAGAAA-----AAAG----AGAAATAAAAAATCAACTAGGCGAACAAAAAA-TTGAAATCAAGAAC
C--TTTTTTA-AATTTGTGAACAAAAATTACAAAAAACATATTTTGAACTTTGGAAAAGTATTTTGAAAGTGTGAACA--
--TTTT-AAAAAAAATTGGGAACAAAATTTGAAACAGGAACATTTCGTAAAGTTTTGAACAATTTATGAGCAACACAAAC
-T--TTTTTTTGAAAAAACGGAAATAGACTTGA-----------------------AAACATTGAAAATAGAAATGAAAA
AAAGAAAAAG--------------------AA-----------AGAAAAAGAAACAGAAAAAGGCAAA-------AAAAA
-------GAAAAAGAAACAAGAAAAGAAAA------------------CAGTTCAGTAACCTCGTAGAAAATTCCCAAGA
CCAGAGAAAACCGGCTGGGAACCAGCTAGA-----AAGTTCCCAAAACCGGAATGGCTGATAAGTTTCACGGACTGGCCC
ATCCCGAACGGTCGTCGCTG-TCCCCGTGTGCGTCGCTGCAGCAGTTTGCCGC-AAGAGCGGCAAATAGGAAA-------
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---------------------------
>chr5B_1
TAAAAATCACTATGTTTTTTGGAACTTCTGAACAGAAT---AAAAAA--A--GGAACAATTATTAAACTCCAGAACATTT
TTTGAAATTTCAAACATATTTTGGAATTCCGTAAAATAAAAATCAAAAG--AAAAAATGAGTAGATTAACAATTACAAAA
GAAATAGAGAA---AAGAAA-----AAAG----AGAAATAAAAAATCAACTAGGCAAACAAAATATTTGAAATCAAGAAC
A--TTTTTTG-AATTTGTGAACAAAAATTTGAAAAAACATATTTTGAACTTCGGAAAAGTATTTTGAAAGTGTGAACA--
--TTTT--AAAAAAATTGGGAACAAAATTTGAAACAGGAACATTTCATGAAGTTTTGAACAATTTATGAGCAACACAAAC
-T--TTTTTT-GAAAAAAGGAAAATAAACTTGAAAACAGGAAAAAGAAAAAGAAAAAAAAG-------------------
------AAAA--------------------AA-----------AGAAAAAGAAAGAGAAAAAGGCAAA-------AAAAA
AGAAAAGGAAAAAGAAAAAAGAAAAAAGAA------------------CGGTTCAGGAACCTTCTAGAAGGTTCCCAAAA
GAAGAGAAACCCGGCTGGGAACCAGCTAGA-----AAGTTCCCATAACCGGAATGGCTGATAAATTTAACGGGCTGGCCC
ATCCCGAACGGTCGTCGCCTTTCCCCGTGTGCGTCGCCGCAGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACC---
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---------------------------
>chr7B_1
TAAAGATCATGAAGTTTTTGG-AACTTTTGAAAAA---------AA---AACAGGAACAATTTTTAACTTAAGAATATTT
TTTGAAATTTCGAACAAAATTTGGAATTCTGAAAAATAAAAATAGAAAG--AAAAAACGAGTAGATTAGGAATTACAAAA
GAAATAGAGAA---AAGAAAGAAAAAGAG----AAATACAAAAAATCAACTAGGTGAATAAA--ATTTGAAATCAAGAAC
A--ATTTTTA-AATTTCCGAACAAAAATTTAAAAGAACATATTTTGAACTTATGAACAATATTTTGAATGTGTGACCA--
---TTT-AGAAAAATTTGGGAACAAAATATGAAACAGGAATATTTCGTGAAGTTTTGAACAATTTATGAGCAACACAAAC
C-----TTTTTAAAAAAACGAAAAAAAACTTTG-----------------------AAAAC-------------------
------AAAA--------------------AA-----------TGAAAAAGAAACAGAAAAAGGAAAA-------AAAGG
-------GAAAAC----AAAAAGAAAAAAA------------------CGGTTCAGGAACCTCCTAGAAGGTTCCCCAAA
CCAGAGAAAACCGGCTGGGAACTAGCTAGA-----AAGTTCCCAAAACCGGAATGGCTGAAAATATTAACGGGCTGACCC
ATCCCGAACGGTCGTAGGTG-TCCCCG-GTGCGTCGCTTCGGTAGTTTGCCGCAAAGAGCAGCAAATAGGAAAAACCC--
--------------------------------------------------------------------------------
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---------------------------
>chr4B_1
TAAAAATCACTAAGTATGTTGGAACTTCTGAACAAAAT---AAG-AA--A--AGGAACATTTTTTAACTTCAGAACATTT
TTTGAAATTT-GAACAAATCTTGGAATTCTGAAAAATAAAAATAGAAAG--AAAAAAGGAGTAGGTTAAGAATTAAAATA
TAAATAG--------AGGAA-----AAAAAGATAAATACAAAAAATCAAGTAGGTGAACAAA--ATTTGAAATCAAGGAC
A--ATTTTTA-AATTTCTGAACAAAAATTTAAAAGAACATATTTTGAACTTCTGAACAATTTTTTGAAAGTGTGAACA--
---TTTT-AAGAAAATTGGAAACAAAATTTGAAGCAGGAACATTCCATGAAGTTTTGAACAATTTATGAGCACACTA---
TC--TTTTTCTCAAAAAGCGAAAAAAAACTTGA-----------------------AAGCAGAAAAAAGAAAAAAGAAAA
AATGAAAAGA--------------------AAGAAAAAGAAATAGAAAAAGAAACAGAAAAAGGAAAA-------AACAG
-------GAAAAAGAG----AGAAAGAAAA------------------CGGTTCTGGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCGGCT-GGAACCAGCTAGA-----AACTTCCCAAAACCGGAATGGCTTAAAATTTTAACGGGCTGGCCC
ATCCCGAACAGTCGTCCCTG-TCCCC-TGTGCGTCGCTCCGGCAGTTTGCCGCAAAGAGCGGCAAATAGGAAAAACCC--
--------------------------------------------------------------------------------
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---------------------------
>chr4D_1
TAAAAATCACTAAGTTTTTTG-AACTTCTGAACAACAT---AAAAA---AACAGGAACAAATTTTAATTTCAGAATGTTT
TTTGAAATTTTGAACAAAATTTGGAATTCTGAAAAATAAAAATAGAAAG--AA--AAAGGGTAGATTAAGAATTACAAAA
GAAATAGAGAA---AAGGAA-----AAAAAGATAAATACAAAAAATCAACTAGGTCAACAAA--ATTTGAAATCAAGAAC
A--TTTTTAA-AATTTCTGAAAAAAATTTAATAC-AACATATTTTGAACTTCTAAACAATATTTTGAAAGTGTGAACA--
---TTTTTACAAAATGTGGGAACAAAATTTGAAACAGGAACATTTCGTGAAGTTTTGAATAATTTATGAGCAACACA---
TT--TTTTTTTGAAAAAACAAAAATAAACTTGA-----------------------AAAAA-------------------
------AAAAGAATAATGAAAAACGAAAAGAA-----------AGAAAAATAAACAGAAAAGAAAAAA-------AGGGA
--------------AAAAAAGGAAAAAAAC------------------CGGTTCAGGAACCTCCTAGAAGGTTCCCAAAA
CCAGAGAAAACCG-------------------------------------------------------------------
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---------------------------
>chr3D_679
--------------------------------------------------------------------------------
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------------------------------------------CTTCTCACAGGCTTGAACGCATGCTTCGATGAAAAAAG
AAGGCCCCAACAGCCCTGTCCAGCCTAGCCCAACCAATCAACGAACGGTAGCGAACTGTGCTCGGCCCACTAGCTCAACG
CGTCCACCCAATGGTTTGCTCCGAAAAATAATCAACAAACTTGGACGCCAAGTT--CGATCACGATACGAACCGACGTGC
ACGAACCCGTGGCCGCCAAGGAAGCG---AAGCCCAAAGTCA-GCCGTGCTGTAT------GTATAAATAGGCCACCGGC
AGACCCGA----TCTCCACGTACAGAATCCACGAAGCAAACCAAGAAA-CGATCCAAGATGCGGCGCGAGGGGCGGCAGC
GAGGGTGGGTGCGCGTGTACGACCGCGCCCTGGTCGACCCGGAGGGCAAGCGCCGGGCCGTGCACGTCGTGGATGGCCCC
GTGGTGGCCAACGGCGGCTTCATCAGGGCGCCGCGGAAGCCGACCAACCAGTCCAAGTCCGGCGGCCTCCGCGCGCTCGG
CAGGGACGCCCTCGTGCAA---GAGGACGAGGAGGAGCGGCAGCTCCATCCGCCGCTAGGCGCCGGGCATTCCGGGTACT
ACTGCACAACGACGTGCCAGTCACCCTTCAGATTCGAGGCCGTGCCGTATGGA---------TGGAGGTACGACGCCTTC
GCGCCCGAGGAAGTGCAAGCTCCTCGTCCGCCGCCGGCAGCG---CGTTCCGGGGGTAGAGGAGCGTCCTG---CAAAGG
GAGCCGCAAGTTCAAGCACAGCGAGATCAAGATGTACTACGTCGACGCGGCCGATGACGTCGATGGGCGCCTAGATTATC
TCTG-TGACTTCGATTCATGATT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TCCCCCTTTGTTTTCCA-----AAGTTCAAAAAGAGGAGTTGTAAACTAGTACTGTAGATC
TGATGGATGTGTGTATCTTTGTCCCTTCTGTTAT---------CAATGCAGGTGCGTGCTCTAATGAAGATCATGT----
-----------------TGTTATTTTTCTCCGG-GTCCATAT-GAATCTTTAAACGTGTTGACCTCAAACTAAAAGTTGA
AATTCTGG-CAGTGACGCCAGCTTGAAGCACTACTTTATAGTTTCTTTATG-----------------------------
------------------------------------------------------------AAATTGTGAACAATTGGCAT
GAGTGAATATCAAATGTCCACCGTCAAATTATTCATAGGTG-TGATTT-------AACTGAAATTGTTTTGCTT------
-AAAAGGACAATGCAATACTCATCTCAATTCTCAAAGTAAA--TTTTTTGCACC-TTTTTAGATAAAAGACGCCCGCCCG
ACTTTAGGAGGACGGAGCTAGAACCCAACTAGGGCGGACGAGCTCGGTCTCTACACTACATTCTCCGTCCCCCGAATAG-
-TTTCTCTAACTGTTAGTGGTTTTAACTATAATTTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATTTGACTAAGAGACTACTGTTTGTTTGAAAGTATGGCCTAACTGAACCTTGGGGATTAAAACTT
AAAGTGCAGCTGGCAGCGCGTTCCGGGGGAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACACATTGAACCAATTTGTGAAGAAAAAAATATTGTGAGGGCTAGATGGGAACTTTTTTAGCTTT
TTGGCCCCACAGACAATTGTATTTTATGTTTCGCCCCCAGCACATGTTTTCTAGCTCCGCCACTGGTGCAAGGTACATCA
ACTACTAGAGCCTCAGCTTCTCCGTCGCCGCCCGCGGGGCCTTGTAAGCATCCGTTTCTGCGCTGTAGTTAAGTTCCCGC
CGTCATGCCGTACATACCTAGTACTCCCTCTATGAACTAATATAAGAGCGTTTAGATCACTACTTTAGTAATCTAAACAC
TCTTATATTAGTTTAGGGAGGGAGTAGAACTCAAAGTTTCTCTTCCCTGTCTTCACGGTCGCTGCGCAGTTGATCTTGGC
ACCGCAATCAGTAATTATCTCAAGCACGATACGGTGATGAAACTGGTGAAGCTCGGGATAATCATAATAGCCATATCCTT
GCCTGGTTGGGTCATCTTTACTCTACTCATGATCCGGGCCCGTGCCCTGGGAGATGTGGATTTGGCGGAGAGGTACGAGT
GCATCGCCTGCATGTTCATAGCTATCTTCAGGTGGGTACTCAGGCGCCTCCTCGGCTGCGGGTGTCAGGCTCTCTGGCAG
GCAGCTGCATCTCCGGCTATCTCCAGCTCGCGGTCGTCCACGTCGTTGTTATAACAAAGAGGCTTTGTTGTAATTGCAAC
ATATGACCCTTGTGTCAAAGCATCTCAGCATCTCCGCTCGTGGTTGTGCCCGTCGCCAAGGCAACAAGACCCTTGTTGCA
ATTAGGATGGGTCAGGATGGGTCAGCCCAATTAGAACGGTTTTGGGAAGGTTCCTTTTGTTTTTCAATTTTATGAACCTT
CTATATGGTTCTGGTACAGATTTTGTTCGTCTACCTTTTTTCCATTATTCCTTTTTGATTATTTTGGGTTTTGTTTTCAT
TTTTTCCTTAAAATATCCCTGAATTTTTTTAAAATCTTAAAATATGTGAACACTTTATAATAGATATTCAAGAAATATTC
ATATTTAAAAAAAATTTAAAAATATTCTTGTATTTTCACAAAACAAATGTTCACAAACATTTAAAAATATTCTTATTTTT
TCCAAAAATATTCACAAACATTGAGTCGCCCTTGTCCAAAAGCAAGGCATTTTGACGCACAATGCGTCATTTTGTTTTTT
GAGGGAAGCACAGTGCGTCATATAGAGAGGGAGGCTCGAAACACTGCGATGCGAGCCTCACATTCTTCTGACAGGCATGA
ATGCATGCCTCGATAAAAAAAAGGCTCAAACAGCCCTGCCCAGCCTAGCCCAACCAAGCAAAGAGATGCGACAATAGCGA
ACTGTGTTTGGCCCATTAGTTCGACGCGTCCTGTTTGCTCCAAAAGAAAAAAAATCAGAAACTTGGACGCCAAGTTCCCG
ATCACGATACGAACTGACAAACACCAACCCGTGGCCGGCAAGGAAGAGCAGCCCGAAGCGGGCCGTGTGTCTGTACATAT
ACAGTGTATAAAATAGGCCACCGGCAGCACCGTTCCGGTCGCACAGAACAGACGAAGCAAACCCAACGAAACGAGCGACG
ATGCGGCGCGAGGGGCGGCAGCGAGGGTGGGTGCGCGTCTACGACCGCGCCCTGGTGGACCCGGAGGGCAAGCGCCGCGC
CGTGCACGTTGTCGACGGCCCCGTGGTGGCCAACGGCGGCTACATCAGGGCGTCCCGGAAGCCGACCAACCAGTCCAAGT
CCGGCGGCCTCCGCGCCCTCGGCAGGGACGCCCTCACGCTAGAGGAGGACGAGGAGCCGCAGCCCCTTCCGCCCGAGGAC
AAGCGCTTCGGCTACTACTACTCCAAGGGGTGGCAGTCGCCGTTCAAGTACGAGGCCACCTCAGGGCAGTCGTGGAACTG
GAAGTACGATGCCGCCGAGCACGAGCAGGTGCACGCTCGTCAGCCGCTGGCGGCGCATCTCGGGGGGAGATCGGCGTGCA
AGGGGAGCCGCAAGTTCAAGCACGACGAGATCAAGACGTACTATCTCGACGCGGCCGACGTAGTCGATGAGCAGCTCGAT
TCTCTCTGCTGTGATTTCGATTCATGA
>chr1D_836
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---------------------------------------CTTGGACGCCAAGTTCCCGATCACGACACGAACCGGCGCGC
ACGAACCCGTGGCCGCCA----------------CGAAGCC-GGGCGCGTCGTGT------GTATAAATAGGCCACCGGC
GCCTGCGG----TCTCGACGCACAGA-----CAGAACCCACGAAGCAAACGAGCGAAGATGCGGCGCGAGGGACGGCAGC
GAGGGTGGGTGCGCGTGTACGACCGCTCCCTGGTCGACCCGGAGGGCAGGCGCCGCGCCGTGCACGTCGTGGACGGCCCG
GTGGTGGCCAACGGCGGCTTCATCAGGGCGCCCCGGAAGCCGACGAACCAGTCCAAGTCCGGCGGCCTCCGCGCGCTCGG
CAGGGACGCCCTCGCGCA------GGAGGAGGAGCAGCCGCAGCTCCATCCGCCGCTGGGCGCCGGGCACTCCGGGTACT
ACTGCACGACGACGTGCCAGTCGCCGTTCAAGTTCGAGGCCGTGCCGTATCAA---------TGGGAGTACGACGCCTTC
GTGCCCGAGGAGGTGCAGGCTCCTCGTCCGCCGCCGGCAACG---CGTCTCGGGG---GAAGGGCGGCGTG---CAAGGG
GAGCCGCAAGTTCAAGCACAACGAGATCAAGATGTACTACCTCGACGCGGCCGAGGATGTCGATGGGCGCCTCGATTATC
TCTA-TGACTTCGATTCATGAAGCGCACGGA-------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTGACTTTAAAAAAAAAAATCTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CCCCTTTGTTTTGCC-----AAGTTCAGCAGGAGGAGGTGTATC---------------
--------------------------TTTGTCATGACTGTATCCAATGCAGGTGCTTGCTCCAATGAAGATCATGT----
-----------------TGTTATTGTACTCCCGAGTCC--AT-GAATCTTTAAACGTGTTGATCTCTAATTAAAAGTTCA
ATTTTTTA-TAGTGAC---AGCCTGAAGCATTATTT--T-----------------------------------------
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>chr1A_836
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---------------------------------------CTTGGACGCCAAGTTCCCGATCACGATACGAACCGGCGCGC
ACGAACCCGTGGCCGCCAAGGAAGGG---AAGCCCGACGCCGGGGCGTGTCGTGT------GTATAAATAGGCCACCGGC
ACCTGCGGTCTCTCTCGACGCACAGA-----CAGAACCCACGAAGCAAACGAGCGAAGATGCGGCGCGAGGGACGGCAGC
GAGGGTGGGTGCGCGTGTACGACCGCTCCCTGGTCGACCCGGAGGGCAAGCGGCGCGCCGTGCACGCCGTCGACGTCCCG
GTGGTGGCCAACGGCGGCTTCATCAGGGCGCCCCGGAAGCCGACGAACCAGTCCAAGTCCGGCGGCCTCCGCGCGCTCGG
CAGGGACGCCCTAGCTAGAG--GAGGAGGAGCCGGAGCCGCAGCTCCATCCGCCGCTGGGCGCCGGGTACTCCGGGTACT
ACTGCACGACGACGTGCCAGTCGCCGTTCAAGTTCGAGGCCGTGCCGTATCAA---------TGGGAGTACGATGCCTTC
GCGCCCGAGGAGGTGCAGGCTCCTCGTCCGCCGCCGCCGCCGGCGCGGTTCGGGG---GAAGAGCGGCGTG---CAAGGG
GAGCCGCAAGTTCAGGCACAGCGAGATCAAGATGTACTACCTCGACGCGGCCGAGGATGTCGACGGGCGCCTCGATTATC
TCTA-TGACTTCGATTCATGA-----------------------------------------------------------
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>chr3A_876
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-------------------------------------------------------------------------------C
ACGAACCCGTGTCCGCCAAGGAAGAAGCCAAGCCCGAAGCG-GGTCGCGTGCTGTATATGCATATAAATCGTCCAGCGGC
AGTCCCGG----TCTCCACGCACAGAACCCACGAAGCGAACCAAGGAAACGCGAAG-GATGCGGCGAGAGGGACGGCAGC
GAGGGTGGGTGCGCGTGTACGACCGCGCCCTGGTGGACCCGGAGGGCAAGCGCCGCGCCGTGCACGTCGTCGACGGCCCC
GTGGTGGCCAACGGCGGCTTCATCCGGGCGCCGCGGAAGCCGACCAACCAATCCAAGTCCGGCGGCCTCCGCGCGCTCGG
CAGGGACGCCCTCAT----G--GACGAGGAGGACGAGCCGCAGGCCCTTCCGCCGGAGAACAAGCGC---TTCGGCTACT
ACTACTCCAAGGGGTGGCAGTCGCCGTTCAAGTATGAGGCCACGTCAGGGCAACGGCTGTCGTGGAAGTACGACGCCGCC
GAGCACGAGGAGGTGCACGCTC---GCCAGCCGCCGCCGGCAGCGCGTTCCGAGG---GCAGATCGGCGTG---CAAGGG
GAGCCGCAAGTTCAGGCACGACGAGATCAAGACGTACTATCTCGACGCAGCCGACGTAGTCGATGAGCAGCTCGATTGTC
TCTG-TGATTTCGATTCATGA-GCGCACGGAACCGGGCTGCATTGCCGCTATACAACAAGAGGATTTGTTTTCTTTCCTT
TTTCCGTGTCCTTTTGCAGATTTCGGGAAAGAGTGGTTGCATACTGGATCCAATGGGTCGATGTGTATCTTTGTTCCTTT
TATTATGAAGTATATCCTGTTAAACGGAGTCACCATACTGTACTCAGAATATGTTGATTCTCAAATTAAAAGTCCATATT
TCAGTATACAAACGTATATTTTCAGATACATGCACCGGGGTTTGGCGCGCTCCGGCTGTTGTCGGCGACGAGGTCTCTCT
CCTCACCAGCTAGGTGGGCGTCGGTGGTGGTCATGGCATACTTGCGCCGGGGGACAGATCCACGCCCATGACCACGAACG
TAGCTTCGTGCGAGCTCCCCTTGGCCAATGCCAGAGGGCTATGACCGGGGCTTGCTCGGCGGTGGTCGTTGGCGGTGGCG
GAGCTTGAGCCAAATCTTTGAAGGGGTAAAACTATGAGGTTTAGCCTGTGACGTAGTCAACGAGCAACTCCATTACCTCT
GTGATTTTGATTCATGGTTTCCACCTTTGTTTTCCA-----AAGTTCAGCAAGAGGAGTTGTAAAC---TACTGTAGATC
CGATGGATGTGTGTATCTTTGTCCCTTCCGTTGT---------CAATGTAGTTGCTTGCTCTAATGAAGATCATGT----
-----------------TGTTATTATACTCCGG-GTCC--AT-GAATCTTTAAACGTGTT--TCTCAAACTAAAAGTTGA
AATTCTGG-CAGTGAC---AGCTTGAAGCACTATTT--TAGTTTCTTTATG-----------------------------
------------------------------------------------------------AAATTCTGAACAATTGGCAT
GAGTGAATATCAAATGTCCACCATCAAATTATTCATGGGGTATAATTAATGATATAACTGA--TTTTTTTTCTT------
-AAAAGGACAATGCAATGCTCATCTCAATTCTCAAAGTAAT--TTTTTGGCATTTTTTTTAGATAAAAGACGCCTGCCCG
ACTTTAGGAGGACGAAGCTAGAACCCTACTAGGGCGGACGAGCTCGGTCTCTACACTACATTCTCCGTTCCCTGAATAGT
TTTTCTCTCATTGTTAGTGTTTTTAGCTCGGCAAAAATTATACTCCCTTCGTTCCACAATTCTTGTCGTAATTTGAAATA
AAACTACGTCAAGAATTATGAAACAGAGGAGTAGCATAAACATTATATTGCACTTCCAGATCA----AAACTCCAAAAAT
TAGGTTGATTATTTCTGCACATAT--------------------------------------------------------
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>chr3A_925
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----------------------------------------------------TAT------ATAAATATAGGCCATCGGC
ACCTCCGA----TCCTCACGCACAGAATCCACCGAGCAAACCAAGGAAACGAACGAAGATGCGTCGCGAGGGACGGCAGC
GAGGGTGGGTGCGCGTGTACGACCGGTCACTGGTGGACCCGGAGGGCAAGCGCCGCGCCGTGCATGTCGTAGACGGCCCC
GTGGTGGCCAACGGCGGCTACATCAGGGCGTCCCGGAGGCCGACCAACCAGTCCAAGTCCGGCGGCCTCCGCGCGCTCGG
CAGGGACGCCCTCGTGCAAGACGACGAGGAGGAGGAGCCGCAACTGCATCCGCCGCTGGGCGCCGGACATTCTGGGTACT
ACTGCACAACCACGTGCCAGTCACCCTTCAGATTCGAGGCTGTGCCATATCAA---------TGGAGGTACGATGCCTTC
GCGCCCGAGGAAGTGCAAGCTCCTCGGCCGCCGCCGGCAGCAGCGCGTTCCGGGG---GGAGATCGGCGTCGCACAAGGG
GAGCCGCAAGTTCAAGCACAGCGAGATCAAGATGTACTACCTCGACGCGGCCGATGTCGTTGATGGGCGTCTCGATTATC
TCTATTGACTTCGATTCATGATTACT------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------TTTCTCCCTTTGTTTTCCTAAGTGAAGTTCAGCAAGAGGAGTTGTAAAC---TA-----GATC
CGGTCGATGTGTGTATCTTTGTCCCTTTTGTTATAAGTGTATCCAATGCAGGTGCTTTCTCTATTGAAAATAAAGACTTC
GTTACGAAAATACTCCATGACATTGTACTCCAA-CTCC--ATAGAATCTTTTAACGTGTTGATCTCAAATTAAAAGTTGA
AATTTTGG-TAGTGAC---AGCCTGAAGCATTATTT--TAGTTTTTTTTCCTGGAAAAAGGCTTTTCGTTTTTTTTTTTC
ATACTTTTTGTGAGGAATCTTCTGTAATTAGAGGCACTGGACTTTTCGTGAGGAATGACAAAATTTTGAACAATTGGCAT
GAGGGAATATCAAATGTCCACCGTCAAATTATTCATGGGGTATGATTC-------AACTGA--TTGTTTTGCTT------
-AAAAGGACAATGCAATACTCATCTCAATTCTCAAAGTAAA--TTTTTTGCACT-TTTTTAGATAAAAGACGCCTGCCCG
ACTTTAGGAGGACGAAGCTAGAACCCAACTAGGGCGGACGAGCTCGGTCTCTACACTACATTCTCTGTTCCCCGAATAGT
TTTTCTCTCACTGTTAGTGGTTTTAGCTCAGCAAAAATTATGCTCCCTCCGTACCACAATTCTTGTCGTAATTTGAAATA
AAACTACGTCAAGAATTATGAAACAGAGGAGTGGCATAAACATCATATTGCACTTCCAGATCAACTCAAACTCCAAAAAT
TAGGTTGATTATTTCTGCACATATATTAAGACAAGTTACCACACAAGCGGAAGAAGAATTGACTAGATAATAAGAAAACC
TGCCAAAACTAGCACATCTTCAACATGACGCACATCAACAAAACTGATGACTATCACATCCCAGATTTTTCCCAATATGG
AATGATTAAAATTTCACAGGAAATTAATTTTTTTTCTAGAAATGCTTTTTTTT----CCTTTAGTGATTTTTGAGGGATT
TTTACTTTAACTATAATTTGACTAAGAGACTACTGTTTGTGTGAAAGTATGGCCCAACTGAACCTTGGGGATTAAAACCC
AAAGTGGAGCCGGCAGCGTGTTCCCGGGGAAGAG----------------------------------------------
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-----------------------------------------------------------------------CGTCGTGCA
AGGCAGTGACGGA-------------------------------------------------------------------
---------------------------
>SNPs
----------------------------------S------------------------------------------S--
------------S--------------------------S----------------------------------------
----S---------S-S---------------------------------------------------------------
------------------------------------------------------S---------------------S--S
S----------------S-------------------------------------------------------------S
-SS-------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------------------------------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----------S-----------S-S
------S-----------------S-----------------S----S------------S-------S----S------
----S--------------------S------------S-------------------------------------S---
---------------S----------------------------------------------------------------
-----------------------S--------------------------------S-----------------------
-------------S---------------S--------------------------------------------------
--------------------------------------------------------------------------S--SSS
-S-S-----S-----------------S--S-----------------------S-------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------S-----------------------------
------------------------------------------S-------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------S--------S-------------------S---S--------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------S----------------------------S--SSSSSS
S----------------------------------S-----SS-------------S----------------S------
---------S------------------------S---S-----------------------------------------
-------S-----------------------------------------------------------S------S-----
-------S--------------------------------------------------S---------------------
---------------------------------------------------------S------S---------------
--------------------S--------S-----------------S--S--------------S--------------
------------------S--------SS--------------S---S-S---SSSS---S---S---------------
----S--------------------------S-------------------------------S----------------
------------S----S---------S----------------------------------------------------
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---------------------------------------------------------------------------S----
---S----S-----------------------------------------------------------------------
---------------------------
>forward_816
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CCGA
ATCAACGGCAATCTGC----------------------------------------------------------------
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>reverse_2835
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----------------------------------TGGAGGAGCTCGGTCTCTAC--------------------------
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---------------------------
