Multiple sequence alignment - TraesCS3B01G099800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G099800 chr3B 100.000 2785 0 0 1 2785 66677856 66680640 0.000000e+00 5144.0
1 TraesCS3B01G099800 chr3B 96.813 753 18 5 1832 2579 66609710 66608959 0.000000e+00 1253.0
2 TraesCS3B01G099800 chr3B 85.411 1035 102 33 784 1804 66798943 66797944 0.000000e+00 1029.0
3 TraesCS3B01G099800 chr3B 96.951 164 5 0 2622 2785 66608962 66608799 2.730000e-70 276.0
4 TraesCS3B01G099800 chr3B 80.000 390 54 14 836 1219 66738319 66737948 1.640000e-67 267.0
5 TraesCS3B01G099800 chr3B 94.167 120 7 0 666 785 66799099 66798980 1.700000e-42 183.0
6 TraesCS3B01G099800 chr3B 79.705 271 37 15 2328 2591 184964647 184964906 2.200000e-41 180.0
7 TraesCS3B01G099800 chr3D 92.355 1478 52 15 673 2101 42839159 42840624 0.000000e+00 2047.0
8 TraesCS3B01G099800 chr3D 85.268 1025 101 29 802 1804 42886013 42885017 0.000000e+00 1011.0
9 TraesCS3B01G099800 chr3D 91.929 508 25 6 2100 2591 42840783 42841290 0.000000e+00 697.0
10 TraesCS3B01G099800 chr3D 92.925 212 12 2 478 686 42838833 42839044 3.480000e-79 305.0
11 TraesCS3B01G099800 chr3D 90.000 120 12 0 666 785 42886179 42886060 3.710000e-34 156.0
12 TraesCS3B01G099800 chr3D 95.652 92 4 0 2694 2785 42841475 42841566 6.210000e-32 148.0
13 TraesCS3B01G099800 chr3D 82.432 74 12 1 522 594 119574594 119574667 2.320000e-06 63.9
14 TraesCS3B01G099800 chr3D 91.489 47 2 2 620 666 566547619 566547663 2.320000e-06 63.9
15 TraesCS3B01G099800 chr3A 85.098 1020 86 34 802 1804 54879528 54878558 0.000000e+00 981.0
16 TraesCS3B01G099800 chr3A 85.714 707 57 20 2100 2784 54862549 54863233 0.000000e+00 706.0
17 TraesCS3B01G099800 chr3A 81.510 384 30 19 241 612 40331476 40331830 7.600000e-71 278.0
18 TraesCS3B01G099800 chr3A 88.398 181 18 1 1738 1915 54871677 54871857 6.040000e-52 215.0
19 TraesCS3B01G099800 chr3A 82.629 213 23 8 470 678 23878746 23878544 2.850000e-40 176.0
20 TraesCS3B01G099800 chr3A 92.857 56 4 0 364 419 727316709 727316654 6.390000e-12 82.4
21 TraesCS3B01G099800 chr6B 94.667 225 10 2 1 224 696873007 696872784 5.710000e-92 348.0
22 TraesCS3B01G099800 chr6B 91.250 240 8 5 1 227 80802709 80802470 5.790000e-82 315.0
23 TraesCS3B01G099800 chr6B 77.711 498 75 34 2111 2591 172638036 172637558 3.530000e-69 272.0
24 TraesCS3B01G099800 chr6B 95.513 156 6 1 1 155 256990251 256990096 5.960000e-62 248.0
25 TraesCS3B01G099800 chr6B 79.040 396 56 16 1088 1480 83195485 83195856 2.140000e-61 246.0
26 TraesCS3B01G099800 chr6B 77.251 422 61 22 2197 2590 470113683 470113269 6.040000e-52 215.0
27 TraesCS3B01G099800 chr7B 94.619 223 12 0 1 223 246521267 246521045 2.050000e-91 346.0
28 TraesCS3B01G099800 chr7B 91.949 236 8 1 1 225 522306999 522307234 1.240000e-83 320.0
29 TraesCS3B01G099800 chr7B 96.117 103 3 1 129 231 694938259 694938360 1.720000e-37 167.0
30 TraesCS3B01G099800 chr7B 85.246 61 7 2 606 666 107127970 107127912 8.330000e-06 62.1
31 TraesCS3B01G099800 chrUn 91.213 239 8 4 1 227 231445431 231445194 2.080000e-81 313.0
32 TraesCS3B01G099800 chrUn 78.589 397 56 17 1088 1480 26594350 26594721 4.640000e-58 235.0
33 TraesCS3B01G099800 chr4B 89.344 244 8 6 1 226 64789205 64788962 9.760000e-75 291.0
34 TraesCS3B01G099800 chr4B 76.667 180 25 7 352 515 145540618 145540796 1.780000e-12 84.2
35 TraesCS3B01G099800 chr4B 76.667 180 24 8 352 515 644562413 644562236 1.780000e-12 84.2
36 TraesCS3B01G099800 chr6A 78.511 470 72 27 2108 2561 410918545 410919001 5.870000e-72 281.0
37 TraesCS3B01G099800 chr6A 79.093 397 56 17 1087 1480 47696919 47696547 5.960000e-62 248.0
38 TraesCS3B01G099800 chr6A 82.625 259 31 10 415 666 2045428 2045177 1.680000e-52 217.0
39 TraesCS3B01G099800 chr2D 79.271 439 55 27 2106 2524 388520128 388520550 9.830000e-70 274.0
40 TraesCS3B01G099800 chr2D 84.358 179 18 9 2106 2280 324387482 324387310 1.720000e-37 167.0
41 TraesCS3B01G099800 chr2D 82.895 76 13 0 522 597 474248231 474248156 4.980000e-08 69.4
42 TraesCS3B01G099800 chr2A 90.385 208 17 3 18 224 194172536 194172331 1.270000e-68 270.0
43 TraesCS3B01G099800 chr2A 87.892 223 20 6 18 236 137261148 137260929 3.560000e-64 255.0
44 TraesCS3B01G099800 chr2A 78.667 225 40 8 3 224 736988059 736987840 2.890000e-30 143.0
45 TraesCS3B01G099800 chr5A 78.000 450 70 27 2103 2539 342284503 342284070 3.560000e-64 255.0
46 TraesCS3B01G099800 chr5A 79.070 301 43 17 2106 2398 104259778 104259490 3.660000e-44 189.0
47 TraesCS3B01G099800 chr5A 86.885 61 5 3 611 669 275069857 275069798 6.440000e-07 65.8
48 TraesCS3B01G099800 chr6D 82.960 223 30 8 2294 2512 304269393 304269175 7.870000e-46 195.0
49 TraesCS3B01G099800 chr6D 77.358 159 24 5 366 513 159787217 159787374 1.780000e-12 84.2
50 TraesCS3B01G099800 chr4A 82.143 224 30 10 4 224 547074218 547074434 1.700000e-42 183.0
51 TraesCS3B01G099800 chr4A 81.308 107 13 6 562 666 178803170 178803069 2.300000e-11 80.5
52 TraesCS3B01G099800 chr7A 98.936 94 1 0 131 224 17933477 17933384 4.770000e-38 169.0
53 TraesCS3B01G099800 chr7A 74.790 476 70 28 2106 2570 640071222 640070786 4.770000e-38 169.0
54 TraesCS3B01G099800 chr2B 97.917 96 2 0 130 225 699218573 699218668 1.720000e-37 167.0
55 TraesCS3B01G099800 chr2B 76.879 173 24 7 352 508 607220754 607220926 1.780000e-12 84.2
56 TraesCS3B01G099800 chr2B 83.582 67 8 3 605 669 599841722 599841657 3.000000e-05 60.2
57 TraesCS3B01G099800 chr5B 77.409 301 49 16 2106 2398 107855335 107855624 7.980000e-36 161.0
58 TraesCS3B01G099800 chr5D 77.258 299 48 16 2106 2398 98654964 98655248 1.030000e-34 158.0
59 TraesCS3B01G099800 chr5D 76.190 168 33 5 242 407 361673553 361673715 6.390000e-12 82.4
60 TraesCS3B01G099800 chr4D 79.191 173 20 7 241 412 212171922 212172079 3.790000e-19 106.0
61 TraesCS3B01G099800 chr4D 77.778 180 24 8 234 412 463348326 463348490 2.280000e-16 97.1
62 TraesCS3B01G099800 chr4D 87.097 62 6 2 607 666 134796658 134796719 4.980000e-08 69.4
63 TraesCS3B01G099800 chr7D 84.746 59 7 2 609 666 5320694 5320637 1.080000e-04 58.4
64 TraesCS3B01G099800 chr1B 82.812 64 9 2 606 669 38586376 38586315 3.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G099800 chr3B 66677856 66680640 2784 False 5144.00 5144 100.00000 1 2785 1 chr3B.!!$F1 2784
1 TraesCS3B01G099800 chr3B 66608799 66609710 911 True 764.50 1253 96.88200 1832 2785 2 chr3B.!!$R2 953
2 TraesCS3B01G099800 chr3B 66797944 66799099 1155 True 606.00 1029 89.78900 666 1804 2 chr3B.!!$R3 1138
3 TraesCS3B01G099800 chr3D 42838833 42841566 2733 False 799.25 2047 93.21525 478 2785 4 chr3D.!!$F3 2307
4 TraesCS3B01G099800 chr3D 42885017 42886179 1162 True 583.50 1011 87.63400 666 1804 2 chr3D.!!$R1 1138
5 TraesCS3B01G099800 chr3A 54878558 54879528 970 True 981.00 981 85.09800 802 1804 1 chr3A.!!$R2 1002
6 TraesCS3B01G099800 chr3A 54862549 54863233 684 False 706.00 706 85.71400 2100 2784 1 chr3A.!!$F2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.035176 CGGGTAAGGTGGGACGAAAA 59.965 55.0 0.00 0.0 0.0 2.29 F
206 207 0.038526 AACGCGACCTACCAACTGAG 60.039 55.0 15.93 0.0 0.0 3.35 F
208 209 0.456312 CGCGACCTACCAACTGAGAC 60.456 60.0 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1910 0.533491 CATCCTCGTTGGTCCGGTTA 59.467 55.000 0.00 0.0 37.07 2.85 R
1698 1914 1.516386 CGTCATCCTCGTTGGTCCG 60.516 63.158 0.00 0.0 37.07 4.79 R
2077 2341 3.010472 TGGGATGTGACATTTCCAGTGAT 59.990 43.478 14.65 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.355378 CAGCATGGAAAGTTATGACCCA 58.645 45.455 0.00 0.00 0.00 4.51
37 38 3.956199 CAGCATGGAAAGTTATGACCCAT 59.044 43.478 0.00 0.00 38.07 4.00
38 39 4.403432 CAGCATGGAAAGTTATGACCCATT 59.597 41.667 0.00 0.00 35.60 3.16
39 40 5.593909 CAGCATGGAAAGTTATGACCCATTA 59.406 40.000 0.00 0.00 35.60 1.90
40 41 6.096705 CAGCATGGAAAGTTATGACCCATTAA 59.903 38.462 0.00 0.00 35.60 1.40
41 42 6.322201 AGCATGGAAAGTTATGACCCATTAAG 59.678 38.462 0.00 0.00 35.60 1.85
42 43 6.321181 GCATGGAAAGTTATGACCCATTAAGA 59.679 38.462 0.00 0.00 35.60 2.10
43 44 7.014615 GCATGGAAAGTTATGACCCATTAAGAT 59.985 37.037 0.00 0.00 35.60 2.40
44 45 8.917088 CATGGAAAGTTATGACCCATTAAGATT 58.083 33.333 0.00 0.00 35.60 2.40
45 46 8.893563 TGGAAAGTTATGACCCATTAAGATTT 57.106 30.769 0.00 0.00 0.00 2.17
46 47 9.320295 TGGAAAGTTATGACCCATTAAGATTTT 57.680 29.630 0.00 0.00 0.00 1.82
62 63 3.907927 TTTTTCGTTGTGTGCGAGG 57.092 47.368 0.00 0.00 39.61 4.63
63 64 0.378962 TTTTTCGTTGTGTGCGAGGG 59.621 50.000 0.00 0.00 39.61 4.30
64 65 0.745128 TTTTCGTTGTGTGCGAGGGT 60.745 50.000 0.00 0.00 39.61 4.34
65 66 1.433053 TTTCGTTGTGTGCGAGGGTG 61.433 55.000 0.00 0.00 39.61 4.61
66 67 2.279851 CGTTGTGTGCGAGGGTGA 60.280 61.111 0.00 0.00 0.00 4.02
67 68 2.594962 CGTTGTGTGCGAGGGTGAC 61.595 63.158 0.00 0.00 0.00 3.67
68 69 2.279851 TTGTGTGCGAGGGTGACG 60.280 61.111 0.00 0.00 0.00 4.35
74 75 3.774702 GCGAGGGTGACGCGAAAC 61.775 66.667 15.93 10.55 45.76 2.78
75 76 2.049433 CGAGGGTGACGCGAAACT 60.049 61.111 15.93 2.80 45.76 2.66
76 77 1.210931 CGAGGGTGACGCGAAACTA 59.789 57.895 15.93 0.00 45.76 2.24
77 78 0.387622 CGAGGGTGACGCGAAACTAA 60.388 55.000 15.93 0.00 45.76 2.24
78 79 1.787012 GAGGGTGACGCGAAACTAAA 58.213 50.000 15.93 0.00 0.00 1.85
79 80 2.344025 GAGGGTGACGCGAAACTAAAT 58.656 47.619 15.93 0.00 0.00 1.40
80 81 2.740447 GAGGGTGACGCGAAACTAAATT 59.260 45.455 15.93 0.00 0.00 1.82
81 82 2.482721 AGGGTGACGCGAAACTAAATTG 59.517 45.455 15.93 0.00 0.00 2.32
82 83 2.413634 GGGTGACGCGAAACTAAATTGG 60.414 50.000 15.93 0.00 0.00 3.16
83 84 2.224784 GGTGACGCGAAACTAAATTGGT 59.775 45.455 15.93 0.00 0.00 3.67
84 85 3.223157 GTGACGCGAAACTAAATTGGTG 58.777 45.455 15.93 0.00 0.00 4.17
85 86 2.224549 TGACGCGAAACTAAATTGGTGG 59.775 45.455 15.93 0.00 0.00 4.61
86 87 1.538075 ACGCGAAACTAAATTGGTGGG 59.462 47.619 15.93 0.00 0.00 4.61
87 88 1.135517 CGCGAAACTAAATTGGTGGGG 60.136 52.381 0.00 0.00 0.00 4.96
88 89 1.890489 GCGAAACTAAATTGGTGGGGT 59.110 47.619 0.00 0.00 0.00 4.95
89 90 2.352323 GCGAAACTAAATTGGTGGGGTG 60.352 50.000 0.00 0.00 0.00 4.61
90 91 2.230266 CGAAACTAAATTGGTGGGGTGG 59.770 50.000 0.00 0.00 0.00 4.61
91 92 2.319025 AACTAAATTGGTGGGGTGGG 57.681 50.000 0.00 0.00 0.00 4.61
92 93 0.411848 ACTAAATTGGTGGGGTGGGG 59.588 55.000 0.00 0.00 0.00 4.96
93 94 0.325203 CTAAATTGGTGGGGTGGGGG 60.325 60.000 0.00 0.00 0.00 5.40
94 95 0.780494 TAAATTGGTGGGGTGGGGGA 60.780 55.000 0.00 0.00 0.00 4.81
95 96 1.679969 AAATTGGTGGGGTGGGGGAA 61.680 55.000 0.00 0.00 0.00 3.97
96 97 2.105640 AATTGGTGGGGTGGGGGAAG 62.106 60.000 0.00 0.00 0.00 3.46
99 100 3.658422 GTGGGGTGGGGGAAGGAC 61.658 72.222 0.00 0.00 0.00 3.85
102 103 2.931649 GGGTGGGGGAAGGACGAA 60.932 66.667 0.00 0.00 0.00 3.85
103 104 2.531601 GGGTGGGGGAAGGACGAAA 61.532 63.158 0.00 0.00 0.00 3.46
104 105 1.457165 GGTGGGGGAAGGACGAAAA 59.543 57.895 0.00 0.00 0.00 2.29
105 106 0.178984 GGTGGGGGAAGGACGAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
126 127 3.291809 AAACCAGCGAAATAAAACGGG 57.708 42.857 0.00 0.00 0.00 5.28
127 128 1.900245 ACCAGCGAAATAAAACGGGT 58.100 45.000 0.00 0.00 0.00 5.28
128 129 1.538075 ACCAGCGAAATAAAACGGGTG 59.462 47.619 0.00 0.00 0.00 4.61
129 130 1.135517 CCAGCGAAATAAAACGGGTGG 60.136 52.381 0.00 0.00 39.55 4.61
130 131 1.135517 CAGCGAAATAAAACGGGTGGG 60.136 52.381 0.00 0.00 0.00 4.61
131 132 1.166989 GCGAAATAAAACGGGTGGGA 58.833 50.000 0.00 0.00 0.00 4.37
132 133 1.131693 GCGAAATAAAACGGGTGGGAG 59.868 52.381 0.00 0.00 0.00 4.30
133 134 1.741145 CGAAATAAAACGGGTGGGAGG 59.259 52.381 0.00 0.00 0.00 4.30
134 135 2.799017 GAAATAAAACGGGTGGGAGGT 58.201 47.619 0.00 0.00 0.00 3.85
135 136 2.209690 AATAAAACGGGTGGGAGGTG 57.790 50.000 0.00 0.00 0.00 4.00
136 137 0.330267 ATAAAACGGGTGGGAGGTGG 59.670 55.000 0.00 0.00 0.00 4.61
137 138 1.781153 TAAAACGGGTGGGAGGTGGG 61.781 60.000 0.00 0.00 0.00 4.61
138 139 4.585216 AACGGGTGGGAGGTGGGA 62.585 66.667 0.00 0.00 0.00 4.37
141 142 4.348495 GGGTGGGAGGTGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
142 143 2.204090 GGTGGGAGGTGGGAGGAA 60.204 66.667 0.00 0.00 0.00 3.36
143 144 2.301738 GGTGGGAGGTGGGAGGAAG 61.302 68.421 0.00 0.00 0.00 3.46
144 145 1.539124 GTGGGAGGTGGGAGGAAGT 60.539 63.158 0.00 0.00 0.00 3.01
145 146 0.252558 GTGGGAGGTGGGAGGAAGTA 60.253 60.000 0.00 0.00 0.00 2.24
146 147 0.252558 TGGGAGGTGGGAGGAAGTAC 60.253 60.000 0.00 0.00 0.00 2.73
147 148 0.981801 GGGAGGTGGGAGGAAGTACC 60.982 65.000 0.00 0.00 39.35 3.34
148 149 0.252558 GGAGGTGGGAGGAAGTACCA 60.253 60.000 0.00 0.00 42.04 3.25
149 150 1.652947 GAGGTGGGAGGAAGTACCAA 58.347 55.000 0.00 0.00 42.04 3.67
150 151 1.982958 GAGGTGGGAGGAAGTACCAAA 59.017 52.381 0.00 0.00 42.04 3.28
151 152 2.374170 GAGGTGGGAGGAAGTACCAAAA 59.626 50.000 0.00 0.00 42.04 2.44
152 153 2.787035 AGGTGGGAGGAAGTACCAAAAA 59.213 45.455 0.00 0.00 42.04 1.94
168 169 2.281539 AAAAAGACCGGGTAAGGTGG 57.718 50.000 6.32 0.00 46.09 4.61
169 170 0.402887 AAAAGACCGGGTAAGGTGGG 59.597 55.000 6.32 0.00 46.09 4.61
170 171 0.474273 AAAGACCGGGTAAGGTGGGA 60.474 55.000 6.32 0.00 46.09 4.37
171 172 1.196766 AAGACCGGGTAAGGTGGGAC 61.197 60.000 6.32 0.00 46.09 4.46
172 173 2.999063 ACCGGGTAAGGTGGGACG 60.999 66.667 6.32 0.00 44.07 4.79
173 174 2.681064 CCGGGTAAGGTGGGACGA 60.681 66.667 0.00 0.00 0.00 4.20
174 175 2.285024 CCGGGTAAGGTGGGACGAA 61.285 63.158 0.00 0.00 0.00 3.85
175 176 1.672898 CGGGTAAGGTGGGACGAAA 59.327 57.895 0.00 0.00 0.00 3.46
176 177 0.035176 CGGGTAAGGTGGGACGAAAA 59.965 55.000 0.00 0.00 0.00 2.29
177 178 1.339342 CGGGTAAGGTGGGACGAAAAT 60.339 52.381 0.00 0.00 0.00 1.82
178 179 2.093553 CGGGTAAGGTGGGACGAAAATA 60.094 50.000 0.00 0.00 0.00 1.40
179 180 3.619487 CGGGTAAGGTGGGACGAAAATAA 60.619 47.826 0.00 0.00 0.00 1.40
180 181 4.334552 GGGTAAGGTGGGACGAAAATAAA 58.665 43.478 0.00 0.00 0.00 1.40
181 182 4.766373 GGGTAAGGTGGGACGAAAATAAAA 59.234 41.667 0.00 0.00 0.00 1.52
182 183 5.335897 GGGTAAGGTGGGACGAAAATAAAAC 60.336 44.000 0.00 0.00 0.00 2.43
183 184 4.859304 AAGGTGGGACGAAAATAAAACC 57.141 40.909 0.00 0.00 0.00 3.27
184 185 3.159472 AGGTGGGACGAAAATAAAACCC 58.841 45.455 0.00 0.00 37.99 4.11
185 186 2.095110 GGTGGGACGAAAATAAAACCCG 60.095 50.000 0.00 0.00 40.08 5.28
186 187 2.095110 GTGGGACGAAAATAAAACCCGG 60.095 50.000 0.00 0.00 40.08 5.73
187 188 2.224719 TGGGACGAAAATAAAACCCGGA 60.225 45.455 0.73 0.00 40.08 5.14
188 189 2.819019 GGGACGAAAATAAAACCCGGAA 59.181 45.455 0.73 0.00 0.00 4.30
189 190 3.366273 GGGACGAAAATAAAACCCGGAAC 60.366 47.826 0.73 0.00 0.00 3.62
202 203 3.866356 GGAACGCGACCTACCAAC 58.134 61.111 15.93 0.00 0.00 3.77
203 204 1.291272 GGAACGCGACCTACCAACT 59.709 57.895 15.93 0.00 0.00 3.16
204 205 1.012486 GGAACGCGACCTACCAACTG 61.012 60.000 15.93 0.00 0.00 3.16
205 206 0.038892 GAACGCGACCTACCAACTGA 60.039 55.000 15.93 0.00 0.00 3.41
206 207 0.038526 AACGCGACCTACCAACTGAG 60.039 55.000 15.93 0.00 0.00 3.35
207 208 0.892358 ACGCGACCTACCAACTGAGA 60.892 55.000 15.93 0.00 0.00 3.27
208 209 0.456312 CGCGACCTACCAACTGAGAC 60.456 60.000 0.00 0.00 0.00 3.36
209 210 0.601558 GCGACCTACCAACTGAGACA 59.398 55.000 0.00 0.00 0.00 3.41
210 211 1.204941 GCGACCTACCAACTGAGACAT 59.795 52.381 0.00 0.00 0.00 3.06
211 212 2.353803 GCGACCTACCAACTGAGACATT 60.354 50.000 0.00 0.00 0.00 2.71
212 213 3.119245 GCGACCTACCAACTGAGACATTA 60.119 47.826 0.00 0.00 0.00 1.90
213 214 4.673441 CGACCTACCAACTGAGACATTAG 58.327 47.826 0.00 0.00 0.00 1.73
214 215 4.440250 CGACCTACCAACTGAGACATTAGG 60.440 50.000 0.00 0.00 0.00 2.69
215 216 4.684724 ACCTACCAACTGAGACATTAGGA 58.315 43.478 8.30 0.00 0.00 2.94
216 217 4.712337 ACCTACCAACTGAGACATTAGGAG 59.288 45.833 8.30 0.00 0.00 3.69
217 218 4.712337 CCTACCAACTGAGACATTAGGAGT 59.288 45.833 0.00 0.00 0.00 3.85
218 219 5.892119 CCTACCAACTGAGACATTAGGAGTA 59.108 44.000 0.00 0.00 0.00 2.59
219 220 5.923733 ACCAACTGAGACATTAGGAGTAG 57.076 43.478 0.00 0.00 0.00 2.57
220 221 5.580998 ACCAACTGAGACATTAGGAGTAGA 58.419 41.667 0.00 0.00 0.00 2.59
221 222 5.654650 ACCAACTGAGACATTAGGAGTAGAG 59.345 44.000 0.00 0.00 0.00 2.43
222 223 5.888724 CCAACTGAGACATTAGGAGTAGAGA 59.111 44.000 0.00 0.00 0.00 3.10
223 224 6.549364 CCAACTGAGACATTAGGAGTAGAGAT 59.451 42.308 0.00 0.00 0.00 2.75
224 225 7.721842 CCAACTGAGACATTAGGAGTAGAGATA 59.278 40.741 0.00 0.00 0.00 1.98
225 226 9.126151 CAACTGAGACATTAGGAGTAGAGATAA 57.874 37.037 0.00 0.00 0.00 1.75
226 227 9.875708 AACTGAGACATTAGGAGTAGAGATAAT 57.124 33.333 0.00 0.00 0.00 1.28
227 228 9.515226 ACTGAGACATTAGGAGTAGAGATAATC 57.485 37.037 0.00 0.00 0.00 1.75
228 229 8.554835 TGAGACATTAGGAGTAGAGATAATCG 57.445 38.462 0.00 0.00 0.00 3.34
229 230 8.158132 TGAGACATTAGGAGTAGAGATAATCGT 58.842 37.037 0.00 0.00 0.00 3.73
230 231 9.656040 GAGACATTAGGAGTAGAGATAATCGTA 57.344 37.037 0.00 0.00 0.00 3.43
294 295 8.782533 CACTTTTGTGGACTAGACATAAAAAC 57.217 34.615 18.84 1.81 46.16 2.43
295 296 8.621286 CACTTTTGTGGACTAGACATAAAAACT 58.379 33.333 18.84 10.33 46.16 2.66
296 297 8.621286 ACTTTTGTGGACTAGACATAAAAACTG 58.379 33.333 18.84 13.55 38.08 3.16
297 298 8.740123 TTTTGTGGACTAGACATAAAAACTGA 57.260 30.769 17.29 3.32 36.45 3.41
298 299 8.918202 TTTGTGGACTAGACATAAAAACTGAT 57.082 30.769 0.00 0.00 0.00 2.90
299 300 7.905604 TGTGGACTAGACATAAAAACTGATG 57.094 36.000 0.00 0.00 0.00 3.07
300 301 6.878923 TGTGGACTAGACATAAAAACTGATGG 59.121 38.462 0.00 0.00 0.00 3.51
301 302 5.880332 TGGACTAGACATAAAAACTGATGGC 59.120 40.000 0.00 0.00 0.00 4.40
302 303 6.116126 GGACTAGACATAAAAACTGATGGCT 58.884 40.000 0.00 0.00 43.94 4.75
303 304 6.599638 GGACTAGACATAAAAACTGATGGCTT 59.400 38.462 0.00 0.00 38.29 4.35
304 305 7.201652 GGACTAGACATAAAAACTGATGGCTTC 60.202 40.741 0.00 0.00 38.29 3.86
305 306 5.551760 AGACATAAAAACTGATGGCTTCG 57.448 39.130 0.00 0.00 38.29 3.79
306 307 4.396166 AGACATAAAAACTGATGGCTTCGG 59.604 41.667 7.61 7.61 38.29 4.30
307 308 4.331968 ACATAAAAACTGATGGCTTCGGA 58.668 39.130 15.43 0.00 34.56 4.55
308 309 4.949856 ACATAAAAACTGATGGCTTCGGAT 59.050 37.500 15.43 1.23 34.56 4.18
309 310 3.855689 AAAAACTGATGGCTTCGGATG 57.144 42.857 15.43 0.00 34.56 3.51
310 311 2.787473 AAACTGATGGCTTCGGATGA 57.213 45.000 15.43 0.00 34.56 2.92
311 312 3.287867 AAACTGATGGCTTCGGATGAT 57.712 42.857 15.43 0.00 34.56 2.45
312 313 2.251409 ACTGATGGCTTCGGATGATG 57.749 50.000 15.43 0.00 34.56 3.07
313 314 0.873054 CTGATGGCTTCGGATGATGC 59.127 55.000 3.18 0.00 42.80 3.91
314 315 0.471191 TGATGGCTTCGGATGATGCT 59.529 50.000 3.64 0.00 43.03 3.79
315 316 1.134007 TGATGGCTTCGGATGATGCTT 60.134 47.619 3.64 0.00 43.03 3.91
316 317 1.952296 GATGGCTTCGGATGATGCTTT 59.048 47.619 3.64 0.00 43.03 3.51
317 318 1.838112 TGGCTTCGGATGATGCTTTT 58.162 45.000 3.64 0.00 43.03 2.27
318 319 2.170166 TGGCTTCGGATGATGCTTTTT 58.830 42.857 3.64 0.00 43.03 1.94
342 343 9.959749 TTTTATTTTTATTGACTGACAGGTCAC 57.040 29.630 7.51 0.00 44.55 3.67
343 344 8.918202 TTATTTTTATTGACTGACAGGTCACT 57.082 30.769 7.51 5.49 44.55 3.41
345 346 7.724305 TTTTTATTGACTGACAGGTCACTAC 57.276 36.000 7.51 0.00 44.55 2.73
346 347 6.413783 TTTATTGACTGACAGGTCACTACA 57.586 37.500 7.51 0.00 44.55 2.74
347 348 6.605471 TTATTGACTGACAGGTCACTACAT 57.395 37.500 7.51 2.34 44.55 2.29
348 349 7.712204 TTATTGACTGACAGGTCACTACATA 57.288 36.000 7.51 1.53 44.55 2.29
349 350 6.605471 ATTGACTGACAGGTCACTACATAA 57.395 37.500 7.51 0.00 44.55 1.90
350 351 5.386958 TGACTGACAGGTCACTACATAAC 57.613 43.478 7.51 0.00 40.72 1.89
351 352 5.077564 TGACTGACAGGTCACTACATAACT 58.922 41.667 7.51 0.00 40.72 2.24
352 353 6.243148 TGACTGACAGGTCACTACATAACTA 58.757 40.000 7.51 0.00 40.72 2.24
353 354 6.890268 TGACTGACAGGTCACTACATAACTAT 59.110 38.462 7.51 0.00 40.72 2.12
354 355 7.101652 ACTGACAGGTCACTACATAACTATG 57.898 40.000 7.51 0.00 36.35 2.23
355 356 6.890268 ACTGACAGGTCACTACATAACTATGA 59.110 38.462 7.51 0.00 35.32 2.15
356 357 7.561722 ACTGACAGGTCACTACATAACTATGAT 59.438 37.037 7.51 0.00 35.32 2.45
357 358 7.716612 TGACAGGTCACTACATAACTATGATG 58.283 38.462 3.73 0.34 34.76 3.07
358 359 7.055667 ACAGGTCACTACATAACTATGATGG 57.944 40.000 3.73 0.00 37.15 3.51
359 360 6.611642 ACAGGTCACTACATAACTATGATGGT 59.388 38.462 3.73 0.00 37.15 3.55
360 361 7.125811 ACAGGTCACTACATAACTATGATGGTT 59.874 37.037 0.00 0.00 37.15 3.67
361 362 7.987458 CAGGTCACTACATAACTATGATGGTTT 59.013 37.037 0.00 0.00 37.15 3.27
362 363 7.987458 AGGTCACTACATAACTATGATGGTTTG 59.013 37.037 0.00 1.60 37.15 2.93
363 364 7.226720 GGTCACTACATAACTATGATGGTTTGG 59.773 40.741 0.00 0.00 37.15 3.28
364 365 7.985184 GTCACTACATAACTATGATGGTTTGGA 59.015 37.037 0.00 0.00 37.15 3.53
365 366 7.985184 TCACTACATAACTATGATGGTTTGGAC 59.015 37.037 0.00 0.00 37.15 4.02
366 367 7.987458 CACTACATAACTATGATGGTTTGGACT 59.013 37.037 0.00 0.00 37.15 3.85
367 368 7.987458 ACTACATAACTATGATGGTTTGGACTG 59.013 37.037 0.00 0.00 37.15 3.51
368 369 6.957631 ACATAACTATGATGGTTTGGACTGA 58.042 36.000 0.00 0.00 37.15 3.41
369 370 7.402054 ACATAACTATGATGGTTTGGACTGAA 58.598 34.615 0.00 0.00 37.15 3.02
370 371 7.888021 ACATAACTATGATGGTTTGGACTGAAA 59.112 33.333 0.00 0.00 37.15 2.69
371 372 8.739039 CATAACTATGATGGTTTGGACTGAAAA 58.261 33.333 0.00 0.00 35.75 2.29
372 373 7.595819 AACTATGATGGTTTGGACTGAAAAA 57.404 32.000 0.00 0.00 0.00 1.94
373 374 7.781324 ACTATGATGGTTTGGACTGAAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
374 375 7.830739 ACTATGATGGTTTGGACTGAAAAATC 58.169 34.615 0.00 0.00 0.00 2.17
375 376 6.669125 ATGATGGTTTGGACTGAAAAATCA 57.331 33.333 0.00 0.00 31.35 2.57
376 377 6.669125 TGATGGTTTGGACTGAAAAATCAT 57.331 33.333 0.00 0.00 39.28 2.45
377 378 6.690530 TGATGGTTTGGACTGAAAAATCATC 58.309 36.000 12.33 12.33 46.82 2.92
378 379 5.119931 TGGTTTGGACTGAAAAATCATCG 57.880 39.130 0.00 0.00 0.00 3.84
379 380 4.824537 TGGTTTGGACTGAAAAATCATCGA 59.175 37.500 0.00 0.00 0.00 3.59
380 381 5.048782 TGGTTTGGACTGAAAAATCATCGAG 60.049 40.000 0.00 0.00 0.00 4.04
381 382 5.048713 GGTTTGGACTGAAAAATCATCGAGT 60.049 40.000 0.00 0.00 0.00 4.18
382 383 6.438763 GTTTGGACTGAAAAATCATCGAGTT 58.561 36.000 0.00 0.00 0.00 3.01
383 384 6.633500 TTGGACTGAAAAATCATCGAGTTT 57.367 33.333 0.00 0.00 31.06 2.66
384 385 6.633500 TGGACTGAAAAATCATCGAGTTTT 57.367 33.333 2.15 2.15 41.42 2.43
385 386 7.737972 TGGACTGAAAAATCATCGAGTTTTA 57.262 32.000 2.51 0.00 39.39 1.52
386 387 7.581476 TGGACTGAAAAATCATCGAGTTTTAC 58.419 34.615 2.51 0.00 39.39 2.01
387 388 7.227711 TGGACTGAAAAATCATCGAGTTTTACA 59.772 33.333 2.51 3.17 39.39 2.41
388 389 7.534239 GGACTGAAAAATCATCGAGTTTTACAC 59.466 37.037 2.51 0.00 39.39 2.90
389 390 7.925993 ACTGAAAAATCATCGAGTTTTACACA 58.074 30.769 2.51 0.00 39.39 3.72
390 391 8.402472 ACTGAAAAATCATCGAGTTTTACACAA 58.598 29.630 2.51 0.00 39.39 3.33
391 392 9.398170 CTGAAAAATCATCGAGTTTTACACAAT 57.602 29.630 2.51 0.00 39.39 2.71
392 393 9.393249 TGAAAAATCATCGAGTTTTACACAATC 57.607 29.630 2.51 2.10 39.39 2.67
393 394 9.393249 GAAAAATCATCGAGTTTTACACAATCA 57.607 29.630 2.51 0.00 39.39 2.57
394 395 9.743057 AAAAATCATCGAGTTTTACACAATCAA 57.257 25.926 0.71 0.00 37.91 2.57
395 396 9.743057 AAAATCATCGAGTTTTACACAATCAAA 57.257 25.926 0.00 0.00 0.00 2.69
396 397 9.743057 AAATCATCGAGTTTTACACAATCAAAA 57.257 25.926 0.00 0.00 0.00 2.44
397 398 8.955061 ATCATCGAGTTTTACACAATCAAAAG 57.045 30.769 0.00 0.00 0.00 2.27
398 399 8.148807 TCATCGAGTTTTACACAATCAAAAGA 57.851 30.769 0.00 0.00 0.00 2.52
399 400 8.282592 TCATCGAGTTTTACACAATCAAAAGAG 58.717 33.333 0.00 0.00 0.00 2.85
400 401 7.780008 TCGAGTTTTACACAATCAAAAGAGA 57.220 32.000 0.00 0.00 0.00 3.10
401 402 8.378172 TCGAGTTTTACACAATCAAAAGAGAT 57.622 30.769 0.00 0.00 0.00 2.75
402 403 8.282592 TCGAGTTTTACACAATCAAAAGAGATG 58.717 33.333 0.00 0.00 0.00 2.90
403 404 7.059945 CGAGTTTTACACAATCAAAAGAGATGC 59.940 37.037 0.00 0.00 0.00 3.91
404 405 7.715657 AGTTTTACACAATCAAAAGAGATGCA 58.284 30.769 0.00 0.00 0.00 3.96
405 406 8.362639 AGTTTTACACAATCAAAAGAGATGCAT 58.637 29.630 0.00 0.00 0.00 3.96
406 407 9.624697 GTTTTACACAATCAAAAGAGATGCATA 57.375 29.630 0.00 0.00 0.00 3.14
411 412 9.715121 ACACAATCAAAAGAGATGCATAAAAAT 57.285 25.926 0.00 0.00 0.00 1.82
420 421 8.693542 AAGAGATGCATAAAAATAAGTGTTGC 57.306 30.769 0.00 0.00 0.00 4.17
421 422 7.829725 AGAGATGCATAAAAATAAGTGTTGCA 58.170 30.769 0.00 0.00 42.15 4.08
422 423 7.756722 AGAGATGCATAAAAATAAGTGTTGCAC 59.243 33.333 0.00 0.00 40.93 4.57
423 424 7.377398 AGATGCATAAAAATAAGTGTTGCACA 58.623 30.769 0.00 0.00 40.93 4.57
437 438 6.596717 GTGTTGCACACGATAATACAAAAG 57.403 37.500 0.00 0.00 39.53 2.27
438 439 5.567534 GTGTTGCACACGATAATACAAAAGG 59.432 40.000 0.00 0.00 39.53 3.11
439 440 5.239744 TGTTGCACACGATAATACAAAAGGT 59.760 36.000 0.00 0.00 0.00 3.50
440 441 5.289917 TGCACACGATAATACAAAAGGTG 57.710 39.130 0.00 0.00 0.00 4.00
441 442 4.757657 TGCACACGATAATACAAAAGGTGT 59.242 37.500 0.00 0.00 44.82 4.16
442 443 5.932883 TGCACACGATAATACAAAAGGTGTA 59.067 36.000 0.00 0.00 46.72 2.90
443 444 6.128499 TGCACACGATAATACAAAAGGTGTAC 60.128 38.462 0.00 0.00 45.51 2.90
444 445 6.091713 GCACACGATAATACAAAAGGTGTACT 59.908 38.462 0.00 0.00 45.51 2.73
445 446 7.360607 GCACACGATAATACAAAAGGTGTACTT 60.361 37.037 0.00 0.00 45.51 2.24
503 504 5.116180 TGGAGATGGATTATGTTGACGTTC 58.884 41.667 0.00 0.00 0.00 3.95
546 548 3.402628 AATCCATCGATAAAGGACCCG 57.597 47.619 5.17 0.00 33.57 5.28
558 560 4.581077 AAAGGACCCGAGACGATATTAC 57.419 45.455 0.00 0.00 0.00 1.89
564 566 3.568853 ACCCGAGACGATATTACTGGAAG 59.431 47.826 0.00 0.00 42.29 3.46
574 576 2.777459 TTACTGGAAGGGGCCAAAAA 57.223 45.000 4.39 0.00 39.30 1.94
584 586 1.419762 GGGGCCAAAAATTCACCAAGT 59.580 47.619 4.39 0.00 0.00 3.16
730 862 3.153369 TGGCCAATCTGCTAAACTTGA 57.847 42.857 0.61 0.00 0.00 3.02
755 887 7.039313 TGTAAGTAGATCTGCATAATGACGT 57.961 36.000 13.64 0.00 0.00 4.34
896 1073 4.520111 TGCTGCACATGGATGGTATAAATC 59.480 41.667 0.00 0.00 0.00 2.17
907 1084 2.240921 TGGTATAAATCTGCTGCCCACA 59.759 45.455 0.00 0.00 0.00 4.17
908 1086 3.287222 GGTATAAATCTGCTGCCCACAA 58.713 45.455 0.00 0.00 0.00 3.33
932 1110 2.102925 CCATTGCTTTTGGTCACTGGTT 59.897 45.455 0.00 0.00 30.99 3.67
999 1190 2.074729 AGATAAGGTCCGGGACAGAG 57.925 55.000 27.32 0.00 33.68 3.35
1194 1394 1.400846 CTGCACGACCTGTACTACGAT 59.599 52.381 0.00 0.00 0.00 3.73
1221 1421 2.978010 CGGCGCAACCTGAACCTT 60.978 61.111 10.83 0.00 35.61 3.50
1425 1625 2.679716 GTCTGGGGCAAGGCTGAT 59.320 61.111 0.00 0.00 0.00 2.90
1515 1721 3.265737 ACATCCCATTGCCACTACTGTTA 59.734 43.478 0.00 0.00 0.00 2.41
1529 1735 6.351033 CCACTACTGTTAGTTTATCAGCTCCA 60.351 42.308 0.00 0.00 36.31 3.86
1646 1862 2.045926 GGCGTGGTGCTGGAAGAT 60.046 61.111 0.00 0.00 45.43 2.40
1689 1905 1.538047 GCACTGCTTCCTGGATGAAA 58.462 50.000 13.34 0.36 0.00 2.69
1691 1907 2.787994 CACTGCTTCCTGGATGAAACT 58.212 47.619 13.34 0.00 0.00 2.66
1694 1910 1.074405 TGCTTCCTGGATGAAACTGCT 59.926 47.619 13.34 0.00 0.00 4.24
1698 1914 3.350219 TCCTGGATGAAACTGCTAACC 57.650 47.619 0.00 0.00 0.00 2.85
2152 2580 5.534914 ATTATTGGGCATAAGGCTATCCA 57.465 39.130 0.00 0.00 44.01 3.41
2614 3069 3.934962 GCGCCCATCTCTCTCCCC 61.935 72.222 0.00 0.00 0.00 4.81
2650 3105 2.045926 GGCCCGCATGTCAAGTCT 60.046 61.111 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.754552 TCATAACTTTCCATGCTGGTGC 59.245 45.455 2.68 0.00 39.03 5.01
12 13 3.129287 GGTCATAACTTTCCATGCTGGTG 59.871 47.826 2.68 0.00 39.03 4.17
13 14 3.356290 GGTCATAACTTTCCATGCTGGT 58.644 45.455 2.68 0.00 39.03 4.00
14 15 2.689983 GGGTCATAACTTTCCATGCTGG 59.310 50.000 0.00 0.00 39.43 4.85
15 16 3.355378 TGGGTCATAACTTTCCATGCTG 58.645 45.455 0.00 0.00 0.00 4.41
16 17 3.737559 TGGGTCATAACTTTCCATGCT 57.262 42.857 0.00 0.00 0.00 3.79
17 18 6.321181 TCTTAATGGGTCATAACTTTCCATGC 59.679 38.462 0.00 0.00 38.14 4.06
18 19 7.880160 TCTTAATGGGTCATAACTTTCCATG 57.120 36.000 0.00 0.00 38.14 3.66
19 20 9.492730 AAATCTTAATGGGTCATAACTTTCCAT 57.507 29.630 0.00 0.00 39.63 3.41
20 21 8.893563 AAATCTTAATGGGTCATAACTTTCCA 57.106 30.769 0.00 0.00 0.00 3.53
44 45 0.378962 CCCTCGCACACAACGAAAAA 59.621 50.000 0.00 0.00 39.39 1.94
45 46 0.745128 ACCCTCGCACACAACGAAAA 60.745 50.000 0.00 0.00 39.39 2.29
46 47 1.153329 ACCCTCGCACACAACGAAA 60.153 52.632 0.00 0.00 39.39 3.46
47 48 1.885388 CACCCTCGCACACAACGAA 60.885 57.895 0.00 0.00 39.39 3.85
48 49 2.279851 CACCCTCGCACACAACGA 60.280 61.111 0.00 0.00 38.02 3.85
49 50 2.279851 TCACCCTCGCACACAACG 60.280 61.111 0.00 0.00 0.00 4.10
50 51 2.594962 CGTCACCCTCGCACACAAC 61.595 63.158 0.00 0.00 0.00 3.32
51 52 2.279851 CGTCACCCTCGCACACAA 60.280 61.111 0.00 0.00 0.00 3.33
58 59 0.387622 TTAGTTTCGCGTCACCCTCG 60.388 55.000 5.77 0.00 0.00 4.63
59 60 1.787012 TTTAGTTTCGCGTCACCCTC 58.213 50.000 5.77 0.00 0.00 4.30
60 61 2.467566 ATTTAGTTTCGCGTCACCCT 57.532 45.000 5.77 0.00 0.00 4.34
61 62 2.413634 CCAATTTAGTTTCGCGTCACCC 60.414 50.000 5.77 0.00 0.00 4.61
62 63 2.224784 ACCAATTTAGTTTCGCGTCACC 59.775 45.455 5.77 0.00 0.00 4.02
63 64 3.223157 CACCAATTTAGTTTCGCGTCAC 58.777 45.455 5.77 3.91 0.00 3.67
64 65 2.224549 CCACCAATTTAGTTTCGCGTCA 59.775 45.455 5.77 0.00 0.00 4.35
65 66 2.413634 CCCACCAATTTAGTTTCGCGTC 60.414 50.000 5.77 0.00 0.00 5.19
66 67 1.538075 CCCACCAATTTAGTTTCGCGT 59.462 47.619 5.77 0.00 0.00 6.01
67 68 1.135517 CCCCACCAATTTAGTTTCGCG 60.136 52.381 0.00 0.00 0.00 5.87
68 69 1.890489 ACCCCACCAATTTAGTTTCGC 59.110 47.619 0.00 0.00 0.00 4.70
69 70 2.230266 CCACCCCACCAATTTAGTTTCG 59.770 50.000 0.00 0.00 0.00 3.46
70 71 2.565391 CCCACCCCACCAATTTAGTTTC 59.435 50.000 0.00 0.00 0.00 2.78
71 72 2.615391 CCCACCCCACCAATTTAGTTT 58.385 47.619 0.00 0.00 0.00 2.66
72 73 1.203250 CCCCACCCCACCAATTTAGTT 60.203 52.381 0.00 0.00 0.00 2.24
73 74 0.411848 CCCCACCCCACCAATTTAGT 59.588 55.000 0.00 0.00 0.00 2.24
74 75 0.325203 CCCCCACCCCACCAATTTAG 60.325 60.000 0.00 0.00 0.00 1.85
75 76 0.780494 TCCCCCACCCCACCAATTTA 60.780 55.000 0.00 0.00 0.00 1.40
76 77 1.679969 TTCCCCCACCCCACCAATTT 61.680 55.000 0.00 0.00 0.00 1.82
77 78 2.100983 TTCCCCCACCCCACCAATT 61.101 57.895 0.00 0.00 0.00 2.32
78 79 2.455532 TTCCCCCACCCCACCAAT 60.456 61.111 0.00 0.00 0.00 3.16
79 80 3.189646 CTTCCCCCACCCCACCAA 61.190 66.667 0.00 0.00 0.00 3.67
82 83 3.658422 GTCCTTCCCCCACCCCAC 61.658 72.222 0.00 0.00 0.00 4.61
85 86 2.071636 TTTTCGTCCTTCCCCCACCC 62.072 60.000 0.00 0.00 0.00 4.61
86 87 0.178984 TTTTTCGTCCTTCCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
87 88 3.425122 TTTTTCGTCCTTCCCCCAC 57.575 52.632 0.00 0.00 0.00 4.61
104 105 4.052608 CCCGTTTTATTTCGCTGGTTTTT 58.947 39.130 0.00 0.00 0.00 1.94
105 106 3.068448 ACCCGTTTTATTTCGCTGGTTTT 59.932 39.130 0.00 0.00 0.00 2.43
106 107 2.624364 ACCCGTTTTATTTCGCTGGTTT 59.376 40.909 0.00 0.00 0.00 3.27
107 108 2.030628 CACCCGTTTTATTTCGCTGGTT 60.031 45.455 0.00 0.00 0.00 3.67
108 109 1.538075 CACCCGTTTTATTTCGCTGGT 59.462 47.619 0.00 0.00 0.00 4.00
109 110 1.135517 CCACCCGTTTTATTTCGCTGG 60.136 52.381 0.00 0.00 0.00 4.85
110 111 1.135517 CCCACCCGTTTTATTTCGCTG 60.136 52.381 0.00 0.00 0.00 5.18
111 112 1.170442 CCCACCCGTTTTATTTCGCT 58.830 50.000 0.00 0.00 0.00 4.93
112 113 1.131693 CTCCCACCCGTTTTATTTCGC 59.868 52.381 0.00 0.00 0.00 4.70
113 114 1.741145 CCTCCCACCCGTTTTATTTCG 59.259 52.381 0.00 0.00 0.00 3.46
114 115 2.490509 CACCTCCCACCCGTTTTATTTC 59.509 50.000 0.00 0.00 0.00 2.17
115 116 2.521126 CACCTCCCACCCGTTTTATTT 58.479 47.619 0.00 0.00 0.00 1.40
116 117 1.272258 CCACCTCCCACCCGTTTTATT 60.272 52.381 0.00 0.00 0.00 1.40
117 118 0.330267 CCACCTCCCACCCGTTTTAT 59.670 55.000 0.00 0.00 0.00 1.40
118 119 1.762471 CCACCTCCCACCCGTTTTA 59.238 57.895 0.00 0.00 0.00 1.52
119 120 2.518933 CCACCTCCCACCCGTTTT 59.481 61.111 0.00 0.00 0.00 2.43
120 121 3.576259 CCCACCTCCCACCCGTTT 61.576 66.667 0.00 0.00 0.00 3.60
121 122 4.585216 TCCCACCTCCCACCCGTT 62.585 66.667 0.00 0.00 0.00 4.44
124 125 3.883822 TTCCTCCCACCTCCCACCC 62.884 68.421 0.00 0.00 0.00 4.61
125 126 2.204090 TTCCTCCCACCTCCCACC 60.204 66.667 0.00 0.00 0.00 4.61
126 127 0.252558 TACTTCCTCCCACCTCCCAC 60.253 60.000 0.00 0.00 0.00 4.61
127 128 0.252558 GTACTTCCTCCCACCTCCCA 60.253 60.000 0.00 0.00 0.00 4.37
128 129 0.981801 GGTACTTCCTCCCACCTCCC 60.982 65.000 0.00 0.00 0.00 4.30
129 130 0.252558 TGGTACTTCCTCCCACCTCC 60.253 60.000 0.00 0.00 37.07 4.30
130 131 1.652947 TTGGTACTTCCTCCCACCTC 58.347 55.000 0.00 0.00 37.07 3.85
131 132 2.127651 TTTGGTACTTCCTCCCACCT 57.872 50.000 0.00 0.00 37.07 4.00
132 133 2.963599 TTTTGGTACTTCCTCCCACC 57.036 50.000 0.00 0.00 37.07 4.61
149 150 1.202964 CCCACCTTACCCGGTCTTTTT 60.203 52.381 0.00 0.00 34.29 1.94
150 151 0.402887 CCCACCTTACCCGGTCTTTT 59.597 55.000 0.00 0.00 34.29 2.27
151 152 0.474273 TCCCACCTTACCCGGTCTTT 60.474 55.000 0.00 0.00 34.29 2.52
152 153 1.159184 TCCCACCTTACCCGGTCTT 59.841 57.895 0.00 0.00 34.29 3.01
153 154 1.611556 GTCCCACCTTACCCGGTCT 60.612 63.158 0.00 0.00 34.29 3.85
154 155 2.984623 GTCCCACCTTACCCGGTC 59.015 66.667 0.00 0.00 34.29 4.79
155 156 2.999063 CGTCCCACCTTACCCGGT 60.999 66.667 0.00 0.00 37.93 5.28
156 157 1.829523 TTTCGTCCCACCTTACCCGG 61.830 60.000 0.00 0.00 0.00 5.73
157 158 0.035176 TTTTCGTCCCACCTTACCCG 59.965 55.000 0.00 0.00 0.00 5.28
158 159 2.502142 ATTTTCGTCCCACCTTACCC 57.498 50.000 0.00 0.00 0.00 3.69
159 160 5.335897 GGTTTTATTTTCGTCCCACCTTACC 60.336 44.000 0.00 0.00 0.00 2.85
160 161 5.335897 GGGTTTTATTTTCGTCCCACCTTAC 60.336 44.000 0.00 0.00 35.43 2.34
161 162 4.766373 GGGTTTTATTTTCGTCCCACCTTA 59.234 41.667 0.00 0.00 35.43 2.69
162 163 3.575256 GGGTTTTATTTTCGTCCCACCTT 59.425 43.478 0.00 0.00 35.43 3.50
163 164 3.159472 GGGTTTTATTTTCGTCCCACCT 58.841 45.455 0.00 0.00 35.43 4.00
164 165 2.095110 CGGGTTTTATTTTCGTCCCACC 60.095 50.000 0.00 0.00 35.08 4.61
165 166 2.095110 CCGGGTTTTATTTTCGTCCCAC 60.095 50.000 0.00 0.00 35.08 4.61
166 167 2.161030 CCGGGTTTTATTTTCGTCCCA 58.839 47.619 0.00 0.00 35.08 4.37
167 168 2.435422 TCCGGGTTTTATTTTCGTCCC 58.565 47.619 0.00 0.00 0.00 4.46
168 169 3.667695 CGTTCCGGGTTTTATTTTCGTCC 60.668 47.826 0.00 0.00 0.00 4.79
169 170 3.481839 CGTTCCGGGTTTTATTTTCGTC 58.518 45.455 0.00 0.00 0.00 4.20
170 171 2.350676 GCGTTCCGGGTTTTATTTTCGT 60.351 45.455 0.00 0.00 0.00 3.85
171 172 2.244251 GCGTTCCGGGTTTTATTTTCG 58.756 47.619 0.00 0.00 0.00 3.46
172 173 2.095819 TCGCGTTCCGGGTTTTATTTTC 60.096 45.455 5.77 0.00 40.60 2.29
173 174 1.878734 TCGCGTTCCGGGTTTTATTTT 59.121 42.857 5.77 0.00 40.60 1.82
174 175 1.197492 GTCGCGTTCCGGGTTTTATTT 59.803 47.619 5.77 0.00 40.60 1.40
175 176 0.798159 GTCGCGTTCCGGGTTTTATT 59.202 50.000 5.77 0.00 40.60 1.40
176 177 1.020861 GGTCGCGTTCCGGGTTTTAT 61.021 55.000 5.77 0.00 40.60 1.40
177 178 1.667510 GGTCGCGTTCCGGGTTTTA 60.668 57.895 5.77 0.00 40.60 1.52
178 179 2.098426 TAGGTCGCGTTCCGGGTTTT 62.098 55.000 5.77 0.00 40.60 2.43
179 180 2.573083 TAGGTCGCGTTCCGGGTTT 61.573 57.895 5.77 0.00 40.60 3.27
180 181 2.990967 TAGGTCGCGTTCCGGGTT 60.991 61.111 5.77 0.00 40.60 4.11
181 182 3.752339 GTAGGTCGCGTTCCGGGT 61.752 66.667 5.77 0.00 40.60 5.28
182 183 4.503314 GGTAGGTCGCGTTCCGGG 62.503 72.222 5.77 0.00 41.10 5.73
183 184 3.285523 TTGGTAGGTCGCGTTCCGG 62.286 63.158 5.77 0.00 37.59 5.14
184 185 2.090524 GTTGGTAGGTCGCGTTCCG 61.091 63.158 5.77 0.00 38.61 4.30
185 186 1.012486 CAGTTGGTAGGTCGCGTTCC 61.012 60.000 5.77 10.57 0.00 3.62
186 187 0.038892 TCAGTTGGTAGGTCGCGTTC 60.039 55.000 5.77 0.09 0.00 3.95
187 188 0.038526 CTCAGTTGGTAGGTCGCGTT 60.039 55.000 5.77 0.00 0.00 4.84
188 189 0.892358 TCTCAGTTGGTAGGTCGCGT 60.892 55.000 5.77 0.00 0.00 6.01
189 190 0.456312 GTCTCAGTTGGTAGGTCGCG 60.456 60.000 0.00 0.00 0.00 5.87
190 191 0.601558 TGTCTCAGTTGGTAGGTCGC 59.398 55.000 0.00 0.00 0.00 5.19
191 192 3.594603 AATGTCTCAGTTGGTAGGTCG 57.405 47.619 0.00 0.00 0.00 4.79
192 193 4.710375 TCCTAATGTCTCAGTTGGTAGGTC 59.290 45.833 0.00 0.00 0.00 3.85
193 194 4.684724 TCCTAATGTCTCAGTTGGTAGGT 58.315 43.478 0.00 0.00 0.00 3.08
194 195 4.712337 ACTCCTAATGTCTCAGTTGGTAGG 59.288 45.833 0.00 0.00 0.00 3.18
195 196 5.923733 ACTCCTAATGTCTCAGTTGGTAG 57.076 43.478 0.00 0.00 0.00 3.18
196 197 6.728411 TCTACTCCTAATGTCTCAGTTGGTA 58.272 40.000 0.00 0.00 0.00 3.25
197 198 5.580998 TCTACTCCTAATGTCTCAGTTGGT 58.419 41.667 0.00 0.00 0.00 3.67
198 199 5.888724 TCTCTACTCCTAATGTCTCAGTTGG 59.111 44.000 0.00 0.00 0.00 3.77
199 200 7.581213 ATCTCTACTCCTAATGTCTCAGTTG 57.419 40.000 0.00 0.00 0.00 3.16
200 201 9.875708 ATTATCTCTACTCCTAATGTCTCAGTT 57.124 33.333 0.00 0.00 0.00 3.16
201 202 9.515226 GATTATCTCTACTCCTAATGTCTCAGT 57.485 37.037 0.00 0.00 0.00 3.41
202 203 8.664798 CGATTATCTCTACTCCTAATGTCTCAG 58.335 40.741 0.00 0.00 0.00 3.35
203 204 8.158132 ACGATTATCTCTACTCCTAATGTCTCA 58.842 37.037 0.00 0.00 0.00 3.27
204 205 8.556213 ACGATTATCTCTACTCCTAATGTCTC 57.444 38.462 0.00 0.00 0.00 3.36
254 255 8.908903 TCCACAAAAGTGAACTTATAAACACAT 58.091 29.630 14.86 5.15 34.61 3.21
255 256 8.185505 GTCCACAAAAGTGAACTTATAAACACA 58.814 33.333 14.86 2.13 34.61 3.72
256 257 8.403236 AGTCCACAAAAGTGAACTTATAAACAC 58.597 33.333 0.00 8.24 34.61 3.32
257 258 8.514330 AGTCCACAAAAGTGAACTTATAAACA 57.486 30.769 0.00 0.00 34.61 2.83
260 261 9.485206 GTCTAGTCCACAAAAGTGAACTTATAA 57.515 33.333 0.00 0.00 34.61 0.98
261 262 8.644216 TGTCTAGTCCACAAAAGTGAACTTATA 58.356 33.333 0.00 0.00 34.61 0.98
262 263 7.506114 TGTCTAGTCCACAAAAGTGAACTTAT 58.494 34.615 0.00 0.00 34.61 1.73
263 264 6.880484 TGTCTAGTCCACAAAAGTGAACTTA 58.120 36.000 0.00 0.00 34.61 2.24
264 265 5.741011 TGTCTAGTCCACAAAAGTGAACTT 58.259 37.500 0.00 0.00 37.91 2.66
265 266 5.353394 TGTCTAGTCCACAAAAGTGAACT 57.647 39.130 0.00 0.00 0.00 3.01
266 267 7.724305 TTATGTCTAGTCCACAAAAGTGAAC 57.276 36.000 0.00 0.00 0.00 3.18
267 268 8.740123 TTTTATGTCTAGTCCACAAAAGTGAA 57.260 30.769 0.00 0.00 0.00 3.18
268 269 8.617809 GTTTTTATGTCTAGTCCACAAAAGTGA 58.382 33.333 0.00 0.00 0.00 3.41
269 270 8.621286 AGTTTTTATGTCTAGTCCACAAAAGTG 58.379 33.333 0.00 0.00 0.00 3.16
270 271 8.621286 CAGTTTTTATGTCTAGTCCACAAAAGT 58.379 33.333 0.00 0.00 0.00 2.66
271 272 8.836413 TCAGTTTTTATGTCTAGTCCACAAAAG 58.164 33.333 0.00 0.00 0.00 2.27
272 273 8.740123 TCAGTTTTTATGTCTAGTCCACAAAA 57.260 30.769 0.00 0.00 0.00 2.44
273 274 8.783093 CATCAGTTTTTATGTCTAGTCCACAAA 58.217 33.333 0.00 0.00 0.00 2.83
274 275 7.390440 CCATCAGTTTTTATGTCTAGTCCACAA 59.610 37.037 0.00 0.00 0.00 3.33
275 276 6.878923 CCATCAGTTTTTATGTCTAGTCCACA 59.121 38.462 0.00 0.00 0.00 4.17
276 277 6.183360 GCCATCAGTTTTTATGTCTAGTCCAC 60.183 42.308 0.00 0.00 0.00 4.02
277 278 5.880332 GCCATCAGTTTTTATGTCTAGTCCA 59.120 40.000 0.00 0.00 0.00 4.02
278 279 6.116126 AGCCATCAGTTTTTATGTCTAGTCC 58.884 40.000 0.00 0.00 0.00 3.85
279 280 7.464710 CGAAGCCATCAGTTTTTATGTCTAGTC 60.465 40.741 0.00 0.00 0.00 2.59
280 281 6.313905 CGAAGCCATCAGTTTTTATGTCTAGT 59.686 38.462 0.00 0.00 0.00 2.57
281 282 6.238211 CCGAAGCCATCAGTTTTTATGTCTAG 60.238 42.308 0.00 0.00 0.00 2.43
282 283 5.584649 CCGAAGCCATCAGTTTTTATGTCTA 59.415 40.000 0.00 0.00 0.00 2.59
283 284 4.396166 CCGAAGCCATCAGTTTTTATGTCT 59.604 41.667 0.00 0.00 0.00 3.41
284 285 4.394920 TCCGAAGCCATCAGTTTTTATGTC 59.605 41.667 0.00 0.00 0.00 3.06
285 286 4.331968 TCCGAAGCCATCAGTTTTTATGT 58.668 39.130 0.00 0.00 0.00 2.29
286 287 4.963276 TCCGAAGCCATCAGTTTTTATG 57.037 40.909 0.00 0.00 0.00 1.90
287 288 5.192927 TCATCCGAAGCCATCAGTTTTTAT 58.807 37.500 0.00 0.00 0.00 1.40
288 289 4.584874 TCATCCGAAGCCATCAGTTTTTA 58.415 39.130 0.00 0.00 0.00 1.52
289 290 3.420893 TCATCCGAAGCCATCAGTTTTT 58.579 40.909 0.00 0.00 0.00 1.94
290 291 3.071874 TCATCCGAAGCCATCAGTTTT 57.928 42.857 0.00 0.00 0.00 2.43
291 292 2.787473 TCATCCGAAGCCATCAGTTT 57.213 45.000 0.00 0.00 0.00 2.66
292 293 2.569059 CATCATCCGAAGCCATCAGTT 58.431 47.619 0.00 0.00 0.00 3.16
293 294 1.813092 GCATCATCCGAAGCCATCAGT 60.813 52.381 0.00 0.00 29.45 3.41
294 295 0.873054 GCATCATCCGAAGCCATCAG 59.127 55.000 0.00 0.00 29.45 2.90
295 296 0.471191 AGCATCATCCGAAGCCATCA 59.529 50.000 0.00 0.00 36.50 3.07
296 297 1.602311 AAGCATCATCCGAAGCCATC 58.398 50.000 0.00 0.00 36.50 3.51
297 298 2.062971 AAAGCATCATCCGAAGCCAT 57.937 45.000 0.00 0.00 36.50 4.40
298 299 1.838112 AAAAGCATCATCCGAAGCCA 58.162 45.000 0.00 0.00 36.50 4.75
299 300 2.947448 AAAAAGCATCATCCGAAGCC 57.053 45.000 0.00 0.00 36.50 4.35
328 329 5.077564 AGTTATGTAGTGACCTGTCAGTCA 58.922 41.667 10.75 9.46 44.38 3.41
329 330 5.646577 AGTTATGTAGTGACCTGTCAGTC 57.353 43.478 10.75 4.73 41.92 3.51
330 331 6.890268 TCATAGTTATGTAGTGACCTGTCAGT 59.110 38.462 11.99 11.99 38.30 3.41
331 332 7.334844 TCATAGTTATGTAGTGACCTGTCAG 57.665 40.000 0.00 0.00 36.34 3.51
332 333 7.201911 CCATCATAGTTATGTAGTGACCTGTCA 60.202 40.741 0.00 0.00 34.79 3.58
333 334 7.148641 CCATCATAGTTATGTAGTGACCTGTC 58.851 42.308 0.00 0.00 35.26 3.51
334 335 6.611642 ACCATCATAGTTATGTAGTGACCTGT 59.388 38.462 0.00 0.00 35.26 4.00
335 336 7.055667 ACCATCATAGTTATGTAGTGACCTG 57.944 40.000 0.00 0.00 35.26 4.00
336 337 7.676683 AACCATCATAGTTATGTAGTGACCT 57.323 36.000 0.00 0.00 35.26 3.85
337 338 7.226720 CCAAACCATCATAGTTATGTAGTGACC 59.773 40.741 0.00 0.00 35.26 4.02
338 339 7.985184 TCCAAACCATCATAGTTATGTAGTGAC 59.015 37.037 0.00 0.00 35.26 3.67
339 340 7.985184 GTCCAAACCATCATAGTTATGTAGTGA 59.015 37.037 0.00 0.00 35.26 3.41
340 341 7.987458 AGTCCAAACCATCATAGTTATGTAGTG 59.013 37.037 0.00 0.00 35.26 2.74
341 342 7.987458 CAGTCCAAACCATCATAGTTATGTAGT 59.013 37.037 0.00 0.00 35.26 2.73
342 343 8.204160 TCAGTCCAAACCATCATAGTTATGTAG 58.796 37.037 0.00 0.00 35.26 2.74
343 344 8.084985 TCAGTCCAAACCATCATAGTTATGTA 57.915 34.615 0.00 0.00 35.26 2.29
344 345 6.957631 TCAGTCCAAACCATCATAGTTATGT 58.042 36.000 0.00 0.00 35.26 2.29
345 346 7.864108 TTCAGTCCAAACCATCATAGTTATG 57.136 36.000 0.00 0.00 35.04 1.90
346 347 8.877864 TTTTCAGTCCAAACCATCATAGTTAT 57.122 30.769 0.00 0.00 0.00 1.89
347 348 8.698973 TTTTTCAGTCCAAACCATCATAGTTA 57.301 30.769 0.00 0.00 0.00 2.24
348 349 7.595819 TTTTTCAGTCCAAACCATCATAGTT 57.404 32.000 0.00 0.00 0.00 2.24
349 350 7.451255 TGATTTTTCAGTCCAAACCATCATAGT 59.549 33.333 0.00 0.00 0.00 2.12
350 351 7.829725 TGATTTTTCAGTCCAAACCATCATAG 58.170 34.615 0.00 0.00 0.00 2.23
351 352 7.773489 TGATTTTTCAGTCCAAACCATCATA 57.227 32.000 0.00 0.00 0.00 2.15
352 353 6.669125 TGATTTTTCAGTCCAAACCATCAT 57.331 33.333 0.00 0.00 0.00 2.45
353 354 6.570186 CGATGATTTTTCAGTCCAAACCATCA 60.570 38.462 0.00 0.00 30.85 3.07
354 355 5.801947 CGATGATTTTTCAGTCCAAACCATC 59.198 40.000 0.00 0.00 0.00 3.51
355 356 5.476599 TCGATGATTTTTCAGTCCAAACCAT 59.523 36.000 0.00 0.00 0.00 3.55
356 357 4.824537 TCGATGATTTTTCAGTCCAAACCA 59.175 37.500 0.00 0.00 0.00 3.67
357 358 5.048713 ACTCGATGATTTTTCAGTCCAAACC 60.049 40.000 0.00 0.00 0.00 3.27
358 359 6.002062 ACTCGATGATTTTTCAGTCCAAAC 57.998 37.500 0.00 0.00 0.00 2.93
359 360 6.633500 AACTCGATGATTTTTCAGTCCAAA 57.367 33.333 0.00 0.00 0.00 3.28
360 361 6.633500 AAACTCGATGATTTTTCAGTCCAA 57.367 33.333 0.00 0.00 0.00 3.53
361 362 6.633500 AAAACTCGATGATTTTTCAGTCCA 57.367 33.333 0.00 0.00 0.00 4.02
362 363 7.534239 GTGTAAAACTCGATGATTTTTCAGTCC 59.466 37.037 7.30 0.00 29.31 3.85
363 364 8.067784 TGTGTAAAACTCGATGATTTTTCAGTC 58.932 33.333 7.30 1.37 29.31 3.51
364 365 7.925993 TGTGTAAAACTCGATGATTTTTCAGT 58.074 30.769 7.30 0.00 29.31 3.41
365 366 8.781067 TTGTGTAAAACTCGATGATTTTTCAG 57.219 30.769 7.30 0.00 29.31 3.02
366 367 9.393249 GATTGTGTAAAACTCGATGATTTTTCA 57.607 29.630 7.30 6.32 29.69 2.69
367 368 9.393249 TGATTGTGTAAAACTCGATGATTTTTC 57.607 29.630 7.30 4.32 29.69 2.29
368 369 9.743057 TTGATTGTGTAAAACTCGATGATTTTT 57.257 25.926 7.30 4.27 31.34 1.94
369 370 9.743057 TTTGATTGTGTAAAACTCGATGATTTT 57.257 25.926 7.20 7.20 32.85 1.82
370 371 9.743057 TTTTGATTGTGTAAAACTCGATGATTT 57.257 25.926 0.00 0.00 0.00 2.17
371 372 9.398170 CTTTTGATTGTGTAAAACTCGATGATT 57.602 29.630 0.00 0.00 0.00 2.57
372 373 8.783093 TCTTTTGATTGTGTAAAACTCGATGAT 58.217 29.630 0.00 0.00 0.00 2.45
373 374 8.148807 TCTTTTGATTGTGTAAAACTCGATGA 57.851 30.769 0.00 0.00 0.00 2.92
374 375 8.282592 TCTCTTTTGATTGTGTAAAACTCGATG 58.717 33.333 0.00 0.00 0.00 3.84
375 376 8.378172 TCTCTTTTGATTGTGTAAAACTCGAT 57.622 30.769 0.00 0.00 0.00 3.59
376 377 7.780008 TCTCTTTTGATTGTGTAAAACTCGA 57.220 32.000 0.00 0.00 0.00 4.04
377 378 7.059945 GCATCTCTTTTGATTGTGTAAAACTCG 59.940 37.037 0.00 0.00 0.00 4.18
378 379 7.862372 TGCATCTCTTTTGATTGTGTAAAACTC 59.138 33.333 0.00 0.00 0.00 3.01
379 380 7.715657 TGCATCTCTTTTGATTGTGTAAAACT 58.284 30.769 0.00 0.00 0.00 2.66
380 381 7.928908 TGCATCTCTTTTGATTGTGTAAAAC 57.071 32.000 0.00 0.00 0.00 2.43
385 386 9.715121 ATTTTTATGCATCTCTTTTGATTGTGT 57.285 25.926 0.19 0.00 0.00 3.72
394 395 9.143631 GCAACACTTATTTTTATGCATCTCTTT 57.856 29.630 0.19 0.00 32.80 2.52
395 396 8.306038 TGCAACACTTATTTTTATGCATCTCTT 58.694 29.630 0.19 0.00 37.40 2.85
396 397 7.756722 GTGCAACACTTATTTTTATGCATCTCT 59.243 33.333 0.19 0.00 43.29 3.10
397 398 7.541783 TGTGCAACACTTATTTTTATGCATCTC 59.458 33.333 0.19 0.00 45.67 2.75
398 399 7.377398 TGTGCAACACTTATTTTTATGCATCT 58.623 30.769 0.19 0.00 45.67 2.90
399 400 7.579589 TGTGCAACACTTATTTTTATGCATC 57.420 32.000 0.19 0.00 45.67 3.91
415 416 9.068445 ACACCTTTTGTATTATCGTGTGCAACA 62.068 37.037 0.00 0.00 40.57 3.33
416 417 5.567534 CACCTTTTGTATTATCGTGTGCAAC 59.432 40.000 0.00 0.00 37.35 4.17
417 418 5.239744 ACACCTTTTGTATTATCGTGTGCAA 59.760 36.000 0.00 0.00 36.32 4.08
418 419 4.757657 ACACCTTTTGTATTATCGTGTGCA 59.242 37.500 0.00 0.00 36.32 4.57
419 420 5.291293 ACACCTTTTGTATTATCGTGTGC 57.709 39.130 0.00 0.00 36.32 4.57
420 421 7.591006 AGTACACCTTTTGTATTATCGTGTG 57.409 36.000 0.00 0.00 42.82 3.82
421 422 8.611654 AAAGTACACCTTTTGTATTATCGTGT 57.388 30.769 0.00 0.00 42.82 4.49
463 464 9.218525 TCCATCTCCATCTTTCTTATACTCTTT 57.781 33.333 0.00 0.00 0.00 2.52
464 465 8.789767 TCCATCTCCATCTTTCTTATACTCTT 57.210 34.615 0.00 0.00 0.00 2.85
465 466 8.971032 ATCCATCTCCATCTTTCTTATACTCT 57.029 34.615 0.00 0.00 0.00 3.24
471 472 9.565090 CAACATAATCCATCTCCATCTTTCTTA 57.435 33.333 0.00 0.00 0.00 2.10
472 473 8.277197 TCAACATAATCCATCTCCATCTTTCTT 58.723 33.333 0.00 0.00 0.00 2.52
473 474 7.718753 GTCAACATAATCCATCTCCATCTTTCT 59.281 37.037 0.00 0.00 0.00 2.52
474 475 7.307632 CGTCAACATAATCCATCTCCATCTTTC 60.308 40.741 0.00 0.00 0.00 2.62
475 476 6.484643 CGTCAACATAATCCATCTCCATCTTT 59.515 38.462 0.00 0.00 0.00 2.52
476 477 5.994054 CGTCAACATAATCCATCTCCATCTT 59.006 40.000 0.00 0.00 0.00 2.40
477 478 5.070981 ACGTCAACATAATCCATCTCCATCT 59.929 40.000 0.00 0.00 0.00 2.90
478 479 5.300752 ACGTCAACATAATCCATCTCCATC 58.699 41.667 0.00 0.00 0.00 3.51
479 480 5.296151 ACGTCAACATAATCCATCTCCAT 57.704 39.130 0.00 0.00 0.00 3.41
480 481 4.753516 ACGTCAACATAATCCATCTCCA 57.246 40.909 0.00 0.00 0.00 3.86
481 482 5.116180 TGAACGTCAACATAATCCATCTCC 58.884 41.667 0.00 0.00 0.00 3.71
482 483 6.662414 TTGAACGTCAACATAATCCATCTC 57.338 37.500 0.00 0.00 30.26 2.75
503 504 8.623310 ATTATTTTAACGGCGGATTACTTTTG 57.377 30.769 13.24 0.00 0.00 2.44
546 548 3.306156 GCCCCTTCCAGTAATATCGTCTC 60.306 52.174 0.00 0.00 0.00 3.36
558 560 1.977129 TGAATTTTTGGCCCCTTCCAG 59.023 47.619 0.00 0.00 37.44 3.86
564 566 1.419762 ACTTGGTGAATTTTTGGCCCC 59.580 47.619 0.00 0.00 0.00 5.80
629 633 0.885196 GCGTTGCCATGGACCTTTTA 59.115 50.000 18.40 0.00 0.00 1.52
720 852 7.492669 TGCAGATCTACTTACATCAAGTTTAGC 59.507 37.037 0.00 0.00 45.54 3.09
730 862 7.661968 ACGTCATTATGCAGATCTACTTACAT 58.338 34.615 0.00 0.00 0.00 2.29
738 870 7.254898 CCAAATACAACGTCATTATGCAGATCT 60.255 37.037 0.00 0.00 0.00 2.75
755 887 8.511321 CACTTGTTAGCATAGTTCCAAATACAA 58.489 33.333 0.00 0.00 0.00 2.41
794 964 8.524870 AAGCAAATATCATGTTTCACAGTTTC 57.475 30.769 0.00 0.00 0.00 2.78
795 965 8.143193 TGAAGCAAATATCATGTTTCACAGTTT 58.857 29.630 13.29 0.00 41.22 2.66
796 966 7.660112 TGAAGCAAATATCATGTTTCACAGTT 58.340 30.769 13.29 0.00 41.22 3.16
797 967 7.218228 TGAAGCAAATATCATGTTTCACAGT 57.782 32.000 13.29 0.00 41.22 3.55
798 968 8.592155 CAATGAAGCAAATATCATGTTTCACAG 58.408 33.333 17.22 11.68 46.15 3.66
799 969 8.089597 ACAATGAAGCAAATATCATGTTTCACA 58.910 29.630 17.22 3.74 46.15 3.58
800 970 8.470040 ACAATGAAGCAAATATCATGTTTCAC 57.530 30.769 17.22 0.00 46.15 3.18
842 1018 3.572584 GCACAAGCTTCTTGGAGATTTG 58.427 45.455 10.80 1.13 37.91 2.32
896 1073 0.899720 AATGGATTTGTGGGCAGCAG 59.100 50.000 0.00 0.00 0.00 4.24
907 1084 4.634199 CAGTGACCAAAAGCAATGGATTT 58.366 39.130 9.15 0.00 40.56 2.17
908 1086 4.261578 CAGTGACCAAAAGCAATGGATT 57.738 40.909 9.15 0.00 40.56 3.01
932 1110 1.074850 TGGTGAGTGAGGGGTGACA 60.075 57.895 0.00 0.00 0.00 3.58
1221 1421 2.731571 GGACAGCTGGTGCCGGATA 61.732 63.158 19.93 0.00 40.80 2.59
1469 1669 1.129058 ACCGTCAAGGAAGTTCCAGT 58.871 50.000 23.87 8.45 45.00 4.00
1646 1862 4.314440 GCCTGCCACTGGTCGTCA 62.314 66.667 0.00 0.00 0.00 4.35
1689 1905 1.005394 CGTTGGTCCGGTTAGCAGT 60.005 57.895 0.00 0.00 0.00 4.40
1691 1907 1.290955 CTCGTTGGTCCGGTTAGCA 59.709 57.895 0.00 0.00 0.00 3.49
1694 1910 0.533491 CATCCTCGTTGGTCCGGTTA 59.467 55.000 0.00 0.00 37.07 2.85
1698 1914 1.516386 CGTCATCCTCGTTGGTCCG 60.516 63.158 0.00 0.00 37.07 4.79
1817 2051 4.389576 GCTCGCCAGCCAAACACG 62.390 66.667 0.00 0.00 40.14 4.49
1840 2074 5.657474 ACATAGTTCACCCGTGTAATGTAG 58.343 41.667 0.00 0.00 0.00 2.74
2068 2332 5.830457 TGACATTTCCAGTGATGGTTTTGTA 59.170 36.000 0.00 0.00 0.00 2.41
2077 2341 3.010472 TGGGATGTGACATTTCCAGTGAT 59.990 43.478 14.65 0.00 0.00 3.06
2595 3045 4.959596 GGAGAGAGATGGGCGCGC 62.960 72.222 25.94 25.94 0.00 6.86
2604 3054 3.347590 TGGCTCGGGGGAGAGAGA 61.348 66.667 0.00 0.00 40.57 3.10
2608 3063 3.992641 TCAGTGGCTCGGGGGAGA 61.993 66.667 0.00 0.00 0.00 3.71
2610 3065 3.924013 ATGTCAGTGGCTCGGGGGA 62.924 63.158 0.00 0.00 0.00 4.81
2614 3069 3.880591 CACATGTCAGTGGCTCGG 58.119 61.111 0.00 0.00 35.88 4.63
2646 3101 1.079438 GAGAGGTGGGGGACAGACT 59.921 63.158 0.00 0.00 0.00 3.24
2650 3105 1.388531 GAGAGAGAGGTGGGGGACA 59.611 63.158 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.