Multiple sequence alignment - TraesCS3B01G093200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G093200 chr3B 100.000 2394 0 0 1 2394 62291557 62293950 0.000000e+00 4421
1 TraesCS3B01G093200 chr3A 87.952 1162 59 32 858 1992 50720070 50721177 0.000000e+00 1295
2 TraesCS3B01G093200 chr3A 79.431 598 69 23 284 841 50719503 50720086 8.080000e-100 374
3 TraesCS3B01G093200 chr3A 89.498 219 22 1 1 218 50719288 50719506 2.340000e-70 276
4 TraesCS3B01G093200 chr3D 92.240 567 24 11 1435 1991 39315276 39315832 0.000000e+00 785
5 TraesCS3B01G093200 chr3D 92.966 526 30 2 921 1439 39314722 39315247 0.000000e+00 760
6 TraesCS3B01G093200 chr3D 85.559 734 93 13 1 726 39311293 39312021 0.000000e+00 756
7 TraesCS3B01G093200 chr3D 85.294 272 36 3 458 726 39312282 39312552 6.520000e-71 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G093200 chr3B 62291557 62293950 2393 False 4421.000000 4421 100.00000 1 2394 1 chr3B.!!$F1 2393
1 TraesCS3B01G093200 chr3A 50719288 50721177 1889 False 648.333333 1295 85.62700 1 1992 3 chr3A.!!$F1 1991
2 TraesCS3B01G093200 chr3D 39311293 39315832 4539 False 644.750000 785 89.01475 1 1991 4 chr3D.!!$F1 1990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.038166 ACTCGTGTCATGGGCCAAAT 59.962 50.0 11.89 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 4675 0.250234 CAGAGGAGGCGACATTTCCA 59.75 55.0 0.0 0.0 33.32 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.016130 GTGCTCACTCGTGTCATGGG 61.016 60.000 0.00 0.00 0.00 4.00
62 63 0.038166 ACTCGTGTCATGGGCCAAAT 59.962 50.000 11.89 0.00 0.00 2.32
66 67 2.029470 TCGTGTCATGGGCCAAATTTTC 60.029 45.455 11.89 0.00 0.00 2.29
106 109 8.865090 TGTTCAATTTTTCTTTTGGGAGCTATA 58.135 29.630 0.00 0.00 0.00 1.31
124 127 7.012894 GGAGCTATATATCACTTAGTGCGAGAT 59.987 40.741 7.61 3.44 32.98 2.75
132 135 4.457949 TCACTTAGTGCGAGATGTAACTCA 59.542 41.667 7.61 0.00 34.04 3.41
142 145 5.392595 GCGAGATGTAACTCAGTCTCTTCTT 60.393 44.000 0.00 0.00 35.97 2.52
169 172 2.857415 GCTACGCGGTCGCTTTAGC 61.857 63.158 21.29 21.29 40.53 3.09
198 201 3.270877 CTCATTAGGACGGTTTTGGGAG 58.729 50.000 0.00 0.00 0.00 4.30
209 212 3.192633 CGGTTTTGGGAGGGTTCTTTATG 59.807 47.826 0.00 0.00 0.00 1.90
222 225 5.126545 GGGTTCTTTATGCCGGTTTTAGAAT 59.873 40.000 1.90 0.00 0.00 2.40
223 226 6.033966 GGTTCTTTATGCCGGTTTTAGAATG 58.966 40.000 1.90 0.00 0.00 2.67
232 235 3.425404 CGGTTTTAGAATGTTCCATGCG 58.575 45.455 0.00 0.00 0.00 4.73
233 236 3.119990 CGGTTTTAGAATGTTCCATGCGT 60.120 43.478 0.00 0.00 0.00 5.24
347 350 9.748708 GTACATTTTCCATATACATGCACAATT 57.251 29.630 0.00 0.00 0.00 2.32
498 504 8.620416 TGAACATATATCTAAAATGTGTGCACC 58.380 33.333 15.69 6.37 31.26 5.01
504 510 8.761575 ATATCTAAAATGTGTGCACCTTTTTG 57.238 30.769 25.19 21.22 39.03 2.44
524 530 9.693157 CTTTTTGAGATGTTGTGTTCATTTTTC 57.307 29.630 0.00 0.00 0.00 2.29
525 531 7.769272 TTTGAGATGTTGTGTTCATTTTTCC 57.231 32.000 0.00 0.00 0.00 3.13
640 651 9.903682 ATGTTACTGAAACTTTTCTGAATGATG 57.096 29.630 13.65 0.00 38.99 3.07
715 1258 1.066430 TGGAACATAACACTCGGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
727 1270 4.357947 GGGCTCACGTCTGCGACA 62.358 66.667 8.91 0.00 42.00 4.35
728 1271 2.355837 GGCTCACGTCTGCGACAA 60.356 61.111 8.91 0.00 42.00 3.18
729 1272 2.658707 GGCTCACGTCTGCGACAAC 61.659 63.158 8.91 0.00 42.00 3.32
730 1273 2.988549 GCTCACGTCTGCGACAACG 61.989 63.158 8.91 0.00 44.22 4.10
731 1274 2.354188 TCACGTCTGCGACAACGG 60.354 61.111 8.91 0.00 42.99 4.44
732 1275 4.059459 CACGTCTGCGACAACGGC 62.059 66.667 8.91 0.00 42.99 5.68
736 1279 2.031919 TCTGCGACAACGGCCATT 59.968 55.556 2.24 0.00 40.15 3.16
737 1280 2.032634 TCTGCGACAACGGCCATTC 61.033 57.895 2.24 0.00 40.15 2.67
738 1281 2.031919 TGCGACAACGGCCATTCT 59.968 55.556 2.24 0.00 40.15 2.40
739 1282 2.244436 CTGCGACAACGGCCATTCTG 62.244 60.000 2.24 0.00 40.15 3.02
740 1283 3.039202 GCGACAACGGCCATTCTGG 62.039 63.158 2.24 0.00 39.27 3.86
741 1284 2.398554 CGACAACGGCCATTCTGGG 61.399 63.158 2.24 0.00 38.19 4.45
749 1292 2.809706 CCATTCTGGGCCGCATTG 59.190 61.111 0.00 0.00 32.67 2.82
750 1293 1.753848 CCATTCTGGGCCGCATTGA 60.754 57.895 0.00 0.00 32.67 2.57
751 1294 1.731433 CCATTCTGGGCCGCATTGAG 61.731 60.000 0.00 0.00 32.67 3.02
752 1295 1.454479 ATTCTGGGCCGCATTGAGG 60.454 57.895 1.50 1.50 0.00 3.86
753 1296 2.215451 ATTCTGGGCCGCATTGAGGT 62.215 55.000 8.30 0.00 0.00 3.85
768 2408 1.553248 TGAGGTACCCAAACGATCTGG 59.447 52.381 8.74 0.00 0.00 3.86
813 2462 3.122850 CCGCATTGCAAGGGATCC 58.877 61.111 13.70 1.92 0.00 3.36
829 2478 2.265467 ATCCGGGCCGTTGCACTAAT 62.265 55.000 26.32 2.08 39.40 1.73
830 2479 2.043980 CCGGGCCGTTGCACTAATT 61.044 57.895 26.32 0.00 39.40 1.40
831 2480 1.136565 CGGGCCGTTGCACTAATTG 59.863 57.895 19.97 0.00 39.40 2.32
845 2494 5.476752 CACTAATTGCAGGTAGCTCTTTC 57.523 43.478 0.00 0.00 45.94 2.62
846 2495 5.181748 CACTAATTGCAGGTAGCTCTTTCT 58.818 41.667 0.00 0.00 45.94 2.52
847 2496 5.293079 CACTAATTGCAGGTAGCTCTTTCTC 59.707 44.000 0.00 0.00 45.94 2.87
848 2497 3.988976 ATTGCAGGTAGCTCTTTCTCA 57.011 42.857 0.00 0.00 45.94 3.27
849 2498 3.769739 TTGCAGGTAGCTCTTTCTCAA 57.230 42.857 0.00 0.00 45.94 3.02
850 2499 3.769739 TGCAGGTAGCTCTTTCTCAAA 57.230 42.857 0.00 0.00 45.94 2.69
851 2500 4.085357 TGCAGGTAGCTCTTTCTCAAAA 57.915 40.909 0.00 0.00 45.94 2.44
852 2501 4.460263 TGCAGGTAGCTCTTTCTCAAAAA 58.540 39.130 0.00 0.00 45.94 1.94
996 3572 2.425592 CCAGCTGTTCCACCGACA 59.574 61.111 13.81 0.00 0.00 4.35
998 3574 1.069765 CAGCTGTTCCACCGACAGT 59.930 57.895 5.25 0.00 44.88 3.55
1029 3605 1.735559 CGGTTCGTCCTCCGTTTCC 60.736 63.158 0.00 0.00 41.58 3.13
1135 3711 4.277476 CTCCAGGACTCAGATCTACAAGT 58.723 47.826 0.00 0.00 0.00 3.16
1137 3713 5.194432 TCCAGGACTCAGATCTACAAGTAC 58.806 45.833 0.00 0.38 0.00 2.73
1286 3866 4.274700 GGTACGCGCTGGCCGATA 62.275 66.667 5.73 0.00 40.02 2.92
1334 3914 0.955428 GGCCAATCTGCTCGTCAACA 60.955 55.000 0.00 0.00 0.00 3.33
1351 3931 1.531423 ACATGCTTGTTCTGGCTCTG 58.469 50.000 0.00 0.00 29.55 3.35
1569 4203 1.839424 GCTGTAGCTTTGGGTTGGAT 58.161 50.000 0.00 0.00 38.21 3.41
1580 4214 1.004628 TGGGTTGGATGATGGAGTGTG 59.995 52.381 0.00 0.00 0.00 3.82
1582 4216 2.238646 GGGTTGGATGATGGAGTGTGTA 59.761 50.000 0.00 0.00 0.00 2.90
1583 4217 3.308117 GGGTTGGATGATGGAGTGTGTAA 60.308 47.826 0.00 0.00 0.00 2.41
1613 4280 0.478072 TGCCACCATTTGTCTGGTCT 59.522 50.000 0.00 0.00 46.79 3.85
1614 4281 0.883833 GCCACCATTTGTCTGGTCTG 59.116 55.000 0.00 0.00 46.79 3.51
1615 4282 1.538047 CCACCATTTGTCTGGTCTGG 58.462 55.000 0.00 0.00 46.79 3.86
1617 4284 2.154462 CACCATTTGTCTGGTCTGGTC 58.846 52.381 0.00 0.00 46.79 4.02
1618 4285 1.774254 ACCATTTGTCTGGTCTGGTCA 59.226 47.619 0.00 0.00 46.79 4.02
1619 4286 2.224621 ACCATTTGTCTGGTCTGGTCAG 60.225 50.000 0.00 0.00 46.79 3.51
1620 4287 1.808945 CATTTGTCTGGTCTGGTCAGC 59.191 52.381 0.00 0.00 32.63 4.26
1621 4288 0.836606 TTTGTCTGGTCTGGTCAGCA 59.163 50.000 0.00 0.00 32.63 4.41
1622 4289 0.106708 TTGTCTGGTCTGGTCAGCAC 59.893 55.000 0.00 0.00 32.63 4.40
1623 4290 1.373497 GTCTGGTCTGGTCAGCACG 60.373 63.158 0.00 0.00 32.63 5.34
1624 4291 2.740055 CTGGTCTGGTCAGCACGC 60.740 66.667 0.00 0.00 0.00 5.34
1625 4292 3.231889 CTGGTCTGGTCAGCACGCT 62.232 63.158 0.00 0.00 0.00 5.07
1626 4293 2.031163 GGTCTGGTCAGCACGCTT 59.969 61.111 0.00 0.00 0.00 4.68
1627 4294 2.320587 GGTCTGGTCAGCACGCTTG 61.321 63.158 0.00 0.00 0.00 4.01
1641 4308 4.031418 CACGCTTGCAAAATATGATCCA 57.969 40.909 0.00 0.00 0.00 3.41
1642 4309 3.792956 CACGCTTGCAAAATATGATCCAC 59.207 43.478 0.00 0.00 0.00 4.02
1643 4310 3.696051 ACGCTTGCAAAATATGATCCACT 59.304 39.130 0.00 0.00 0.00 4.00
1644 4311 4.881273 ACGCTTGCAAAATATGATCCACTA 59.119 37.500 0.00 0.00 0.00 2.74
1645 4312 5.532406 ACGCTTGCAAAATATGATCCACTAT 59.468 36.000 0.00 0.00 0.00 2.12
1646 4313 5.854866 CGCTTGCAAAATATGATCCACTATG 59.145 40.000 0.00 0.00 0.00 2.23
1647 4314 6.513884 CGCTTGCAAAATATGATCCACTATGT 60.514 38.462 0.00 0.00 0.00 2.29
1648 4315 7.307930 CGCTTGCAAAATATGATCCACTATGTA 60.308 37.037 0.00 0.00 0.00 2.29
1803 4474 2.036098 CCTGCCCATGCCAACTGA 59.964 61.111 0.00 0.00 36.33 3.41
1985 4659 9.828852 TCGAAATACACATGTATAAACCAAAAC 57.171 29.630 0.00 0.00 40.10 2.43
1986 4660 8.781404 CGAAATACACATGTATAAACCAAAACG 58.219 33.333 0.00 0.00 40.10 3.60
1987 4661 8.455598 AAATACACATGTATAAACCAAAACGC 57.544 30.769 0.00 0.00 40.10 4.84
1988 4662 5.699097 ACACATGTATAAACCAAAACGCT 57.301 34.783 0.00 0.00 0.00 5.07
1989 4663 6.804770 ACACATGTATAAACCAAAACGCTA 57.195 33.333 0.00 0.00 0.00 4.26
1991 4665 7.822658 ACACATGTATAAACCAAAACGCTATT 58.177 30.769 0.00 0.00 0.00 1.73
1992 4666 8.948145 ACACATGTATAAACCAAAACGCTATTA 58.052 29.630 0.00 0.00 0.00 0.98
1993 4667 9.217223 CACATGTATAAACCAAAACGCTATTAC 57.783 33.333 0.00 0.00 0.00 1.89
1994 4668 8.400186 ACATGTATAAACCAAAACGCTATTACC 58.600 33.333 0.00 0.00 0.00 2.85
1995 4669 8.617809 CATGTATAAACCAAAACGCTATTACCT 58.382 33.333 0.00 0.00 0.00 3.08
1996 4670 7.976826 TGTATAAACCAAAACGCTATTACCTG 58.023 34.615 0.00 0.00 0.00 4.00
1997 4671 3.842732 AACCAAAACGCTATTACCTGC 57.157 42.857 0.00 0.00 0.00 4.85
1998 4672 2.089201 ACCAAAACGCTATTACCTGCC 58.911 47.619 0.00 0.00 0.00 4.85
1999 4673 2.290705 ACCAAAACGCTATTACCTGCCT 60.291 45.455 0.00 0.00 0.00 4.75
2000 4674 3.054948 ACCAAAACGCTATTACCTGCCTA 60.055 43.478 0.00 0.00 0.00 3.93
2001 4675 4.134563 CCAAAACGCTATTACCTGCCTAT 58.865 43.478 0.00 0.00 0.00 2.57
2002 4676 4.024048 CCAAAACGCTATTACCTGCCTATG 60.024 45.833 0.00 0.00 0.00 2.23
2003 4677 3.402628 AACGCTATTACCTGCCTATGG 57.597 47.619 0.00 0.00 0.00 2.74
2004 4678 2.605257 ACGCTATTACCTGCCTATGGA 58.395 47.619 0.00 0.00 0.00 3.41
2005 4679 2.969950 ACGCTATTACCTGCCTATGGAA 59.030 45.455 0.00 0.00 0.00 3.53
2006 4680 3.389983 ACGCTATTACCTGCCTATGGAAA 59.610 43.478 0.00 0.00 0.00 3.13
2007 4681 4.041691 ACGCTATTACCTGCCTATGGAAAT 59.958 41.667 0.00 0.00 0.00 2.17
2008 4682 4.393062 CGCTATTACCTGCCTATGGAAATG 59.607 45.833 0.00 0.00 0.00 2.32
2009 4683 5.316987 GCTATTACCTGCCTATGGAAATGT 58.683 41.667 0.00 0.00 0.00 2.71
2010 4684 5.412904 GCTATTACCTGCCTATGGAAATGTC 59.587 44.000 0.00 0.00 0.00 3.06
2011 4685 2.332063 ACCTGCCTATGGAAATGTCG 57.668 50.000 0.00 0.00 0.00 4.35
2012 4686 0.947244 CCTGCCTATGGAAATGTCGC 59.053 55.000 0.00 0.00 0.00 5.19
2013 4687 0.947244 CTGCCTATGGAAATGTCGCC 59.053 55.000 0.00 0.00 0.00 5.54
2014 4688 0.546122 TGCCTATGGAAATGTCGCCT 59.454 50.000 0.00 0.00 0.00 5.52
2015 4689 1.230324 GCCTATGGAAATGTCGCCTC 58.770 55.000 0.00 0.00 0.00 4.70
2016 4690 1.884235 CCTATGGAAATGTCGCCTCC 58.116 55.000 0.00 0.00 0.00 4.30
2017 4691 1.417890 CCTATGGAAATGTCGCCTCCT 59.582 52.381 0.00 0.00 0.00 3.69
2018 4692 2.548920 CCTATGGAAATGTCGCCTCCTC 60.549 54.545 0.00 0.00 0.00 3.71
2019 4693 1.207791 ATGGAAATGTCGCCTCCTCT 58.792 50.000 0.00 0.00 0.00 3.69
2020 4694 0.250234 TGGAAATGTCGCCTCCTCTG 59.750 55.000 0.00 0.00 0.00 3.35
2021 4695 0.250513 GGAAATGTCGCCTCCTCTGT 59.749 55.000 0.00 0.00 0.00 3.41
2022 4696 1.480954 GGAAATGTCGCCTCCTCTGTA 59.519 52.381 0.00 0.00 0.00 2.74
2023 4697 2.103263 GGAAATGTCGCCTCCTCTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
2024 4698 3.321111 GGAAATGTCGCCTCCTCTGTATA 59.679 47.826 0.00 0.00 0.00 1.47
2025 4699 4.202223 GGAAATGTCGCCTCCTCTGTATAA 60.202 45.833 0.00 0.00 0.00 0.98
2026 4700 5.511545 GGAAATGTCGCCTCCTCTGTATAAT 60.512 44.000 0.00 0.00 0.00 1.28
2027 4701 4.527509 ATGTCGCCTCCTCTGTATAATG 57.472 45.455 0.00 0.00 0.00 1.90
2028 4702 3.296854 TGTCGCCTCCTCTGTATAATGT 58.703 45.455 0.00 0.00 0.00 2.71
2029 4703 3.068165 TGTCGCCTCCTCTGTATAATGTG 59.932 47.826 0.00 0.00 0.00 3.21
2030 4704 3.068307 GTCGCCTCCTCTGTATAATGTGT 59.932 47.826 0.00 0.00 0.00 3.72
2031 4705 4.277672 GTCGCCTCCTCTGTATAATGTGTA 59.722 45.833 0.00 0.00 0.00 2.90
2032 4706 5.047943 GTCGCCTCCTCTGTATAATGTGTAT 60.048 44.000 0.00 0.00 0.00 2.29
2033 4707 5.538813 TCGCCTCCTCTGTATAATGTGTATT 59.461 40.000 0.00 0.00 0.00 1.89
2034 4708 6.041637 TCGCCTCCTCTGTATAATGTGTATTT 59.958 38.462 0.00 0.00 0.00 1.40
2035 4709 6.146184 CGCCTCCTCTGTATAATGTGTATTTG 59.854 42.308 0.00 0.00 0.00 2.32
2036 4710 6.992715 GCCTCCTCTGTATAATGTGTATTTGT 59.007 38.462 0.00 0.00 0.00 2.83
2037 4711 7.499232 GCCTCCTCTGTATAATGTGTATTTGTT 59.501 37.037 0.00 0.00 0.00 2.83
2038 4712 8.830580 CCTCCTCTGTATAATGTGTATTTGTTG 58.169 37.037 0.00 0.00 0.00 3.33
2039 4713 9.599866 CTCCTCTGTATAATGTGTATTTGTTGA 57.400 33.333 0.00 0.00 0.00 3.18
2049 4723 8.537049 AATGTGTATTTGTTGATTGGTTGATG 57.463 30.769 0.00 0.00 0.00 3.07
2050 4724 7.282332 TGTGTATTTGTTGATTGGTTGATGA 57.718 32.000 0.00 0.00 0.00 2.92
2051 4725 7.720442 TGTGTATTTGTTGATTGGTTGATGAA 58.280 30.769 0.00 0.00 0.00 2.57
2052 4726 8.200120 TGTGTATTTGTTGATTGGTTGATGAAA 58.800 29.630 0.00 0.00 0.00 2.69
2053 4727 9.206870 GTGTATTTGTTGATTGGTTGATGAAAT 57.793 29.630 0.00 0.00 0.00 2.17
2054 4728 9.421806 TGTATTTGTTGATTGGTTGATGAAATC 57.578 29.630 0.00 0.00 45.83 2.17
2070 4744 7.992180 GATGAAATCAAAACGCTATTCCAAT 57.008 32.000 0.00 0.00 44.70 3.16
2071 4745 7.992180 ATGAAATCAAAACGCTATTCCAATC 57.008 32.000 0.00 0.00 0.00 2.67
2072 4746 6.329496 TGAAATCAAAACGCTATTCCAATCC 58.671 36.000 0.00 0.00 0.00 3.01
2073 4747 6.152661 TGAAATCAAAACGCTATTCCAATCCT 59.847 34.615 0.00 0.00 0.00 3.24
2074 4748 7.338196 TGAAATCAAAACGCTATTCCAATCCTA 59.662 33.333 0.00 0.00 0.00 2.94
2075 4749 7.823745 AATCAAAACGCTATTCCAATCCTAT 57.176 32.000 0.00 0.00 0.00 2.57
2076 4750 6.861065 TCAAAACGCTATTCCAATCCTATC 57.139 37.500 0.00 0.00 0.00 2.08
2077 4751 5.763204 TCAAAACGCTATTCCAATCCTATCC 59.237 40.000 0.00 0.00 0.00 2.59
2078 4752 5.568620 AAACGCTATTCCAATCCTATCCT 57.431 39.130 0.00 0.00 0.00 3.24
2079 4753 4.810191 ACGCTATTCCAATCCTATCCTC 57.190 45.455 0.00 0.00 0.00 3.71
2080 4754 4.160329 ACGCTATTCCAATCCTATCCTCA 58.840 43.478 0.00 0.00 0.00 3.86
2081 4755 4.780021 ACGCTATTCCAATCCTATCCTCAT 59.220 41.667 0.00 0.00 0.00 2.90
2082 4756 5.114780 CGCTATTCCAATCCTATCCTCATG 58.885 45.833 0.00 0.00 0.00 3.07
2083 4757 5.435291 GCTATTCCAATCCTATCCTCATGG 58.565 45.833 0.00 0.00 0.00 3.66
2084 4758 4.942363 ATTCCAATCCTATCCTCATGGG 57.058 45.455 0.00 0.00 31.62 4.00
2085 4759 1.988107 TCCAATCCTATCCTCATGGGC 59.012 52.381 0.00 0.00 30.40 5.36
2086 4760 1.706866 CCAATCCTATCCTCATGGGCA 59.293 52.381 0.00 0.00 30.40 5.36
2087 4761 2.310945 CCAATCCTATCCTCATGGGCAT 59.689 50.000 0.00 0.00 30.40 4.40
2088 4762 3.353557 CAATCCTATCCTCATGGGCATG 58.646 50.000 0.00 0.00 40.09 4.06
2089 4763 2.421197 TCCTATCCTCATGGGCATGA 57.579 50.000 0.00 0.00 44.83 3.07
2102 4776 7.903995 TCATGGGCATGAGTTTTTAAATTTC 57.096 32.000 0.00 0.00 42.42 2.17
2103 4777 7.448420 TCATGGGCATGAGTTTTTAAATTTCA 58.552 30.769 0.00 0.00 42.42 2.69
2104 4778 7.935755 TCATGGGCATGAGTTTTTAAATTTCAA 59.064 29.630 0.00 0.00 42.42 2.69
2105 4779 8.566260 CATGGGCATGAGTTTTTAAATTTCAAA 58.434 29.630 0.00 0.00 41.20 2.69
2106 4780 8.688747 TGGGCATGAGTTTTTAAATTTCAAAT 57.311 26.923 0.00 0.00 0.00 2.32
2107 4781 9.129532 TGGGCATGAGTTTTTAAATTTCAAATT 57.870 25.926 0.00 0.00 0.00 1.82
2108 4782 9.396938 GGGCATGAGTTTTTAAATTTCAAATTG 57.603 29.630 0.00 0.00 0.00 2.32
2130 4804 9.488124 AATTGAACGAAATTTGAACAAAACATG 57.512 25.926 0.00 0.00 33.56 3.21
2131 4805 7.818493 TGAACGAAATTTGAACAAAACATGA 57.182 28.000 0.00 0.00 33.56 3.07
2132 4806 7.893824 TGAACGAAATTTGAACAAAACATGAG 58.106 30.769 0.00 0.00 33.56 2.90
2133 4807 6.826893 ACGAAATTTGAACAAAACATGAGG 57.173 33.333 0.00 0.00 33.56 3.86
2134 4808 6.337356 ACGAAATTTGAACAAAACATGAGGT 58.663 32.000 0.00 0.00 33.56 3.85
2135 4809 6.255453 ACGAAATTTGAACAAAACATGAGGTG 59.745 34.615 0.00 0.00 33.56 4.00
2136 4810 6.255453 CGAAATTTGAACAAAACATGAGGTGT 59.745 34.615 0.00 0.00 44.84 4.16
2148 4822 4.151258 CATGAGGTGTTGTTCATGTGTC 57.849 45.455 6.36 0.00 43.50 3.67
2149 4823 3.558931 TGAGGTGTTGTTCATGTGTCT 57.441 42.857 0.00 0.00 0.00 3.41
2150 4824 3.884895 TGAGGTGTTGTTCATGTGTCTT 58.115 40.909 0.00 0.00 0.00 3.01
2151 4825 4.269183 TGAGGTGTTGTTCATGTGTCTTT 58.731 39.130 0.00 0.00 0.00 2.52
2152 4826 4.335315 TGAGGTGTTGTTCATGTGTCTTTC 59.665 41.667 0.00 0.00 0.00 2.62
2153 4827 4.269183 AGGTGTTGTTCATGTGTCTTTCA 58.731 39.130 0.00 0.00 0.00 2.69
2154 4828 4.704540 AGGTGTTGTTCATGTGTCTTTCAA 59.295 37.500 0.00 0.00 0.00 2.69
2155 4829 4.798387 GGTGTTGTTCATGTGTCTTTCAAC 59.202 41.667 0.00 0.00 35.68 3.18
2156 4830 5.398169 GTGTTGTTCATGTGTCTTTCAACA 58.602 37.500 0.00 0.00 40.38 3.33
2157 4831 5.861251 GTGTTGTTCATGTGTCTTTCAACAA 59.139 36.000 8.91 8.73 42.81 2.83
2158 4832 5.861251 TGTTGTTCATGTGTCTTTCAACAAC 59.139 36.000 20.24 20.24 45.08 3.32
2159 4833 5.895636 TGTTCATGTGTCTTTCAACAACT 57.104 34.783 0.00 0.00 0.00 3.16
2160 4834 5.639757 TGTTCATGTGTCTTTCAACAACTG 58.360 37.500 0.00 0.00 0.00 3.16
2161 4835 4.291540 TCATGTGTCTTTCAACAACTGC 57.708 40.909 0.00 0.00 0.00 4.40
2162 4836 3.693578 TCATGTGTCTTTCAACAACTGCA 59.306 39.130 0.00 0.00 0.00 4.41
2163 4837 4.157472 TCATGTGTCTTTCAACAACTGCAA 59.843 37.500 0.00 0.00 0.00 4.08
2164 4838 4.095410 TGTGTCTTTCAACAACTGCAAG 57.905 40.909 0.00 0.00 42.29 4.01
2183 4857 8.624701 CTGCAAGTATACCATTTTCTTTCATG 57.375 34.615 0.00 0.00 0.00 3.07
2184 4858 8.347004 TGCAAGTATACCATTTTCTTTCATGA 57.653 30.769 0.00 0.00 0.00 3.07
2185 4859 8.801299 TGCAAGTATACCATTTTCTTTCATGAA 58.199 29.630 3.38 3.38 0.00 2.57
2186 4860 9.638239 GCAAGTATACCATTTTCTTTCATGAAA 57.362 29.630 19.45 19.45 34.55 2.69
2188 4862 9.840427 AAGTATACCATTTTCTTTCATGAAACG 57.160 29.630 16.91 12.76 35.91 3.60
2189 4863 8.458843 AGTATACCATTTTCTTTCATGAAACGG 58.541 33.333 16.91 8.77 35.91 4.44
2190 4864 4.881920 ACCATTTTCTTTCATGAAACGGG 58.118 39.130 16.91 13.15 35.91 5.28
2191 4865 4.244862 CCATTTTCTTTCATGAAACGGGG 58.755 43.478 16.91 7.71 35.91 5.73
2192 4866 4.262420 CCATTTTCTTTCATGAAACGGGGT 60.262 41.667 16.91 1.32 35.91 4.95
2193 4867 4.577834 TTTTCTTTCATGAAACGGGGTC 57.422 40.909 16.91 0.00 35.91 4.46
2194 4868 2.940994 TCTTTCATGAAACGGGGTCA 57.059 45.000 16.91 0.00 0.00 4.02
2195 4869 3.433306 TCTTTCATGAAACGGGGTCAT 57.567 42.857 16.91 0.00 36.11 3.06
2196 4870 3.761897 TCTTTCATGAAACGGGGTCATT 58.238 40.909 16.91 0.00 33.37 2.57
2197 4871 4.148838 TCTTTCATGAAACGGGGTCATTT 58.851 39.130 16.91 0.00 33.37 2.32
2198 4872 4.586841 TCTTTCATGAAACGGGGTCATTTT 59.413 37.500 16.91 0.00 33.37 1.82
2199 4873 4.513198 TTCATGAAACGGGGTCATTTTC 57.487 40.909 5.45 0.00 33.37 2.29
2200 4874 2.823154 TCATGAAACGGGGTCATTTTCC 59.177 45.455 0.00 0.00 33.37 3.13
2201 4875 2.366640 TGAAACGGGGTCATTTTCCA 57.633 45.000 0.00 0.00 0.00 3.53
2202 4876 2.235016 TGAAACGGGGTCATTTTCCAG 58.765 47.619 0.00 0.00 0.00 3.86
2203 4877 0.966179 AAACGGGGTCATTTTCCAGC 59.034 50.000 0.00 0.00 0.00 4.85
2204 4878 1.241315 AACGGGGTCATTTTCCAGCG 61.241 55.000 0.00 0.00 0.00 5.18
2205 4879 2.885113 GGGGTCATTTTCCAGCGC 59.115 61.111 0.00 0.00 0.00 5.92
2206 4880 2.710902 GGGGTCATTTTCCAGCGCC 61.711 63.158 2.29 0.00 0.00 6.53
2207 4881 1.976474 GGGTCATTTTCCAGCGCCA 60.976 57.895 2.29 0.00 0.00 5.69
2208 4882 1.531739 GGGTCATTTTCCAGCGCCAA 61.532 55.000 2.29 0.00 0.00 4.52
2209 4883 0.316841 GGTCATTTTCCAGCGCCAAA 59.683 50.000 2.29 0.00 0.00 3.28
2210 4884 1.066929 GGTCATTTTCCAGCGCCAAAT 60.067 47.619 2.29 0.84 0.00 2.32
2211 4885 1.994779 GTCATTTTCCAGCGCCAAATG 59.005 47.619 18.75 18.75 38.66 2.32
2212 4886 1.891811 TCATTTTCCAGCGCCAAATGA 59.108 42.857 21.50 21.50 42.13 2.57
2213 4887 2.298446 TCATTTTCCAGCGCCAAATGAA 59.702 40.909 22.42 10.10 41.67 2.57
2214 4888 2.898729 TTTTCCAGCGCCAAATGAAA 57.101 40.000 2.29 3.48 0.00 2.69
2215 4889 3.399440 TTTTCCAGCGCCAAATGAAAT 57.601 38.095 2.29 0.00 0.00 2.17
2216 4890 2.367030 TTCCAGCGCCAAATGAAATG 57.633 45.000 2.29 0.00 0.00 2.32
2217 4891 0.531657 TCCAGCGCCAAATGAAATGG 59.468 50.000 2.29 1.13 41.08 3.16
2218 4892 0.247185 CCAGCGCCAAATGAAATGGT 59.753 50.000 2.29 0.00 40.23 3.55
2222 4896 2.721274 CGCCAAATGAAATGGTGTCA 57.279 45.000 0.00 0.00 42.27 3.58
2223 4897 3.235157 CGCCAAATGAAATGGTGTCAT 57.765 42.857 0.00 0.00 42.27 3.06
2224 4898 4.368874 CGCCAAATGAAATGGTGTCATA 57.631 40.909 0.00 0.00 42.27 2.15
2225 4899 4.935702 CGCCAAATGAAATGGTGTCATAT 58.064 39.130 0.00 0.00 42.27 1.78
2226 4900 4.741185 CGCCAAATGAAATGGTGTCATATG 59.259 41.667 0.00 0.00 42.27 1.78
2227 4901 5.663456 GCCAAATGAAATGGTGTCATATGT 58.337 37.500 1.90 0.00 40.23 2.29
2228 4902 6.459435 CGCCAAATGAAATGGTGTCATATGTA 60.459 38.462 1.90 0.00 42.27 2.29
2229 4903 7.436118 GCCAAATGAAATGGTGTCATATGTAT 58.564 34.615 1.90 0.00 40.23 2.29
2230 4904 8.575589 GCCAAATGAAATGGTGTCATATGTATA 58.424 33.333 1.90 0.00 40.23 1.47
2231 4905 9.897744 CCAAATGAAATGGTGTCATATGTATAC 57.102 33.333 1.90 0.00 34.60 1.47
2239 4913 9.653287 AATGGTGTCATATGTATACTTATTCGG 57.347 33.333 8.23 0.20 32.44 4.30
2240 4914 8.411991 TGGTGTCATATGTATACTTATTCGGA 57.588 34.615 8.23 2.20 0.00 4.55
2241 4915 8.520351 TGGTGTCATATGTATACTTATTCGGAG 58.480 37.037 8.23 0.00 0.00 4.63
2242 4916 8.521176 GGTGTCATATGTATACTTATTCGGAGT 58.479 37.037 8.23 0.00 0.00 3.85
2243 4917 9.343103 GTGTCATATGTATACTTATTCGGAGTG 57.657 37.037 8.23 0.00 0.00 3.51
2244 4918 9.292195 TGTCATATGTATACTTATTCGGAGTGA 57.708 33.333 8.23 1.66 0.00 3.41
2250 4924 9.640963 ATGTATACTTATTCGGAGTGATTAAGC 57.359 33.333 4.17 0.00 41.23 3.09
2251 4925 8.857098 TGTATACTTATTCGGAGTGATTAAGCT 58.143 33.333 4.17 0.00 41.23 3.74
2252 4926 9.694137 GTATACTTATTCGGAGTGATTAAGCTT 57.306 33.333 3.48 3.48 41.23 3.74
2253 4927 6.910536 ACTTATTCGGAGTGATTAAGCTTG 57.089 37.500 9.86 0.00 41.23 4.01
2254 4928 6.640518 ACTTATTCGGAGTGATTAAGCTTGA 58.359 36.000 9.86 0.00 41.23 3.02
2255 4929 7.275920 ACTTATTCGGAGTGATTAAGCTTGAT 58.724 34.615 9.86 6.27 41.23 2.57
2256 4930 5.998454 ATTCGGAGTGATTAAGCTTGATG 57.002 39.130 8.68 0.00 0.00 3.07
2257 4931 3.198068 TCGGAGTGATTAAGCTTGATGC 58.802 45.455 8.68 1.71 43.29 3.91
2266 4940 4.137879 GCTTGATGCTGCCGATCT 57.862 55.556 0.00 0.00 38.95 2.75
2267 4941 2.401967 GCTTGATGCTGCCGATCTT 58.598 52.632 0.00 0.00 38.95 2.40
2268 4942 0.029035 GCTTGATGCTGCCGATCTTG 59.971 55.000 0.00 0.00 38.95 3.02
2269 4943 1.376543 CTTGATGCTGCCGATCTTGT 58.623 50.000 0.00 0.00 0.00 3.16
2270 4944 1.741706 CTTGATGCTGCCGATCTTGTT 59.258 47.619 0.00 0.00 0.00 2.83
2271 4945 1.372582 TGATGCTGCCGATCTTGTTC 58.627 50.000 0.00 0.00 0.00 3.18
2272 4946 1.338960 TGATGCTGCCGATCTTGTTCA 60.339 47.619 0.00 0.00 0.00 3.18
2273 4947 1.063174 GATGCTGCCGATCTTGTTCAC 59.937 52.381 0.00 0.00 0.00 3.18
2274 4948 0.250252 TGCTGCCGATCTTGTTCACA 60.250 50.000 0.00 0.00 0.00 3.58
2275 4949 0.874390 GCTGCCGATCTTGTTCACAA 59.126 50.000 0.00 0.00 0.00 3.33
2276 4950 1.470098 GCTGCCGATCTTGTTCACAAT 59.530 47.619 0.00 0.00 35.02 2.71
2277 4951 2.677836 GCTGCCGATCTTGTTCACAATA 59.322 45.455 0.00 0.00 35.02 1.90
2278 4952 3.242543 GCTGCCGATCTTGTTCACAATAG 60.243 47.826 0.00 0.00 35.02 1.73
2279 4953 4.183865 CTGCCGATCTTGTTCACAATAGA 58.816 43.478 0.00 0.00 35.02 1.98
2280 4954 4.183865 TGCCGATCTTGTTCACAATAGAG 58.816 43.478 0.00 0.00 35.02 2.43
2281 4955 3.557595 GCCGATCTTGTTCACAATAGAGG 59.442 47.826 0.00 0.00 35.02 3.69
2282 4956 4.122776 CCGATCTTGTTCACAATAGAGGG 58.877 47.826 0.00 0.00 35.02 4.30
2283 4957 4.122776 CGATCTTGTTCACAATAGAGGGG 58.877 47.826 0.00 0.00 35.02 4.79
2284 4958 4.455606 GATCTTGTTCACAATAGAGGGGG 58.544 47.826 0.00 0.00 35.02 5.40
2285 4959 3.526899 TCTTGTTCACAATAGAGGGGGA 58.473 45.455 0.00 0.00 35.02 4.81
2286 4960 4.111577 TCTTGTTCACAATAGAGGGGGAT 58.888 43.478 0.00 0.00 35.02 3.85
2287 4961 5.285401 TCTTGTTCACAATAGAGGGGGATA 58.715 41.667 0.00 0.00 35.02 2.59
2288 4962 5.729229 TCTTGTTCACAATAGAGGGGGATAA 59.271 40.000 0.00 0.00 35.02 1.75
2289 4963 6.389869 TCTTGTTCACAATAGAGGGGGATAAT 59.610 38.462 0.00 0.00 35.02 1.28
2290 4964 7.570982 TCTTGTTCACAATAGAGGGGGATAATA 59.429 37.037 0.00 0.00 35.02 0.98
2291 4965 7.699709 TGTTCACAATAGAGGGGGATAATAA 57.300 36.000 0.00 0.00 0.00 1.40
2292 4966 8.108378 TGTTCACAATAGAGGGGGATAATAAA 57.892 34.615 0.00 0.00 0.00 1.40
2293 4967 7.996644 TGTTCACAATAGAGGGGGATAATAAAC 59.003 37.037 0.00 0.00 0.00 2.01
2294 4968 7.699709 TCACAATAGAGGGGGATAATAAACA 57.300 36.000 0.00 0.00 0.00 2.83
2295 4969 7.514721 TCACAATAGAGGGGGATAATAAACAC 58.485 38.462 0.00 0.00 0.00 3.32
2296 4970 7.128109 TCACAATAGAGGGGGATAATAAACACA 59.872 37.037 0.00 0.00 0.00 3.72
2297 4971 7.445402 CACAATAGAGGGGGATAATAAACACAG 59.555 40.741 0.00 0.00 0.00 3.66
2298 4972 7.128883 ACAATAGAGGGGGATAATAAACACAGT 59.871 37.037 0.00 0.00 0.00 3.55
2299 4973 5.373812 AGAGGGGGATAATAAACACAGTG 57.626 43.478 0.00 0.00 0.00 3.66
2300 4974 4.166144 AGAGGGGGATAATAAACACAGTGG 59.834 45.833 5.31 0.00 0.00 4.00
2301 4975 3.856206 AGGGGGATAATAAACACAGTGGT 59.144 43.478 5.31 0.00 0.00 4.16
2302 4976 4.293901 AGGGGGATAATAAACACAGTGGTT 59.706 41.667 9.31 9.31 0.00 3.67
2303 4977 5.020795 GGGGGATAATAAACACAGTGGTTT 58.979 41.667 9.69 7.63 43.08 3.27
2304 4978 5.126545 GGGGGATAATAAACACAGTGGTTTC 59.873 44.000 9.69 0.32 41.07 2.78
2305 4979 5.949952 GGGGATAATAAACACAGTGGTTTCT 59.050 40.000 9.69 0.00 41.07 2.52
2306 4980 7.114095 GGGGATAATAAACACAGTGGTTTCTA 58.886 38.462 9.69 1.91 41.07 2.10
2307 4981 7.066645 GGGGATAATAAACACAGTGGTTTCTAC 59.933 40.741 9.69 0.00 41.07 2.59
2308 4982 7.827729 GGGATAATAAACACAGTGGTTTCTACT 59.172 37.037 9.69 0.00 41.07 2.57
2318 4992 6.560253 CAGTGGTTTCTACTGTTTATGCTT 57.440 37.500 5.34 0.00 40.43 3.91
2319 4993 7.667043 CAGTGGTTTCTACTGTTTATGCTTA 57.333 36.000 5.34 0.00 40.43 3.09
2320 4994 8.268850 CAGTGGTTTCTACTGTTTATGCTTAT 57.731 34.615 5.34 0.00 40.43 1.73
2321 4995 9.378551 CAGTGGTTTCTACTGTTTATGCTTATA 57.621 33.333 5.34 0.00 40.43 0.98
2332 5006 9.177608 ACTGTTTATGCTTATATTGTCACATGT 57.822 29.630 0.00 0.00 0.00 3.21
2345 5019 6.875948 TTGTCACATGTAATTGTAAGCAGT 57.124 33.333 0.00 0.00 0.00 4.40
2346 5020 6.875948 TGTCACATGTAATTGTAAGCAGTT 57.124 33.333 0.00 0.00 0.00 3.16
2347 5021 7.270757 TGTCACATGTAATTGTAAGCAGTTT 57.729 32.000 0.00 0.00 0.00 2.66
2348 5022 7.138081 TGTCACATGTAATTGTAAGCAGTTTG 58.862 34.615 0.00 0.00 0.00 2.93
2349 5023 6.582295 GTCACATGTAATTGTAAGCAGTTTGG 59.418 38.462 0.00 0.00 0.00 3.28
2350 5024 6.264292 TCACATGTAATTGTAAGCAGTTTGGT 59.736 34.615 0.00 0.00 0.00 3.67
2351 5025 6.922957 CACATGTAATTGTAAGCAGTTTGGTT 59.077 34.615 0.00 0.00 41.42 3.67
2352 5026 7.437862 CACATGTAATTGTAAGCAGTTTGGTTT 59.562 33.333 0.00 0.00 39.08 3.27
2353 5027 7.651704 ACATGTAATTGTAAGCAGTTTGGTTTC 59.348 33.333 0.00 0.00 39.08 2.78
2354 5028 7.101652 TGTAATTGTAAGCAGTTTGGTTTCA 57.898 32.000 0.00 0.00 39.08 2.69
2355 5029 7.548097 TGTAATTGTAAGCAGTTTGGTTTCAA 58.452 30.769 12.91 12.91 44.67 2.69
2356 5030 6.902224 AATTGTAAGCAGTTTGGTTTCAAC 57.098 33.333 12.83 1.76 43.87 3.18
2357 5031 5.652994 TTGTAAGCAGTTTGGTTTCAACT 57.347 34.783 8.35 0.00 39.17 3.16
2358 5032 5.652994 TGTAAGCAGTTTGGTTTCAACTT 57.347 34.783 0.00 0.00 39.08 2.66
2359 5033 5.646606 TGTAAGCAGTTTGGTTTCAACTTC 58.353 37.500 0.00 0.00 39.08 3.01
2360 5034 4.799564 AAGCAGTTTGGTTTCAACTTCA 57.200 36.364 0.00 0.00 33.88 3.02
2361 5035 4.110036 AGCAGTTTGGTTTCAACTTCAC 57.890 40.909 0.00 0.00 31.78 3.18
2362 5036 3.509575 AGCAGTTTGGTTTCAACTTCACA 59.490 39.130 0.00 0.00 31.78 3.58
2363 5037 4.160252 AGCAGTTTGGTTTCAACTTCACAT 59.840 37.500 0.00 0.00 31.78 3.21
2364 5038 4.268405 GCAGTTTGGTTTCAACTTCACATG 59.732 41.667 0.00 0.00 31.78 3.21
2365 5039 5.410067 CAGTTTGGTTTCAACTTCACATGT 58.590 37.500 0.00 0.00 31.78 3.21
2366 5040 5.868801 CAGTTTGGTTTCAACTTCACATGTT 59.131 36.000 0.00 0.00 31.78 2.71
2367 5041 6.368516 CAGTTTGGTTTCAACTTCACATGTTT 59.631 34.615 0.00 0.00 31.78 2.83
2368 5042 7.543868 CAGTTTGGTTTCAACTTCACATGTTTA 59.456 33.333 0.00 0.00 31.78 2.01
2369 5043 8.257306 AGTTTGGTTTCAACTTCACATGTTTAT 58.743 29.630 0.00 0.00 31.78 1.40
2370 5044 8.878769 GTTTGGTTTCAACTTCACATGTTTATT 58.121 29.630 0.00 0.00 31.78 1.40
2371 5045 9.442047 TTTGGTTTCAACTTCACATGTTTATTT 57.558 25.926 0.00 0.00 31.78 1.40
2372 5046 9.442047 TTGGTTTCAACTTCACATGTTTATTTT 57.558 25.926 0.00 0.00 0.00 1.82
2373 5047 9.442047 TGGTTTCAACTTCACATGTTTATTTTT 57.558 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.742900 CGAGTCAATGCACGTAGGCG 61.743 60.000 0.00 0.00 44.93 5.52
23 24 3.686622 AGCACAAAAGCTCGAGTCA 57.313 47.368 15.13 0.00 42.18 3.41
47 48 2.336667 CGAAAATTTGGCCCATGACAC 58.663 47.619 0.00 0.00 0.00 3.67
62 63 6.567687 TGAACATAATGAAAGAGCCGAAAA 57.432 33.333 0.00 0.00 0.00 2.29
66 67 7.816945 AAAATTGAACATAATGAAAGAGCCG 57.183 32.000 0.00 0.00 0.00 5.52
96 97 5.125578 CGCACTAAGTGATATATAGCTCCCA 59.874 44.000 0.00 0.00 35.23 4.37
106 109 7.013369 TGAGTTACATCTCGCACTAAGTGATAT 59.987 37.037 0.00 0.00 37.28 1.63
124 127 4.632153 GCCAAAGAAGAGACTGAGTTACA 58.368 43.478 0.00 0.00 0.00 2.41
132 135 0.321122 CCAGCGCCAAAGAAGAGACT 60.321 55.000 2.29 0.00 0.00 3.24
169 172 0.531532 CGTCCTAATGAGCTGGCCTG 60.532 60.000 3.32 4.26 0.00 4.85
198 201 4.011698 TCTAAAACCGGCATAAAGAACCC 58.988 43.478 0.00 0.00 0.00 4.11
305 308 8.903820 GGAAAATGTACAGCCTGTATCTAAATT 58.096 33.333 8.00 1.73 35.05 1.82
306 309 8.052748 TGGAAAATGTACAGCCTGTATCTAAAT 58.947 33.333 8.00 0.00 35.05 1.40
311 314 7.986085 ATATGGAAAATGTACAGCCTGTATC 57.014 36.000 8.00 0.92 35.05 2.24
319 322 7.929159 TGTGCATGTATATGGAAAATGTACAG 58.071 34.615 0.33 0.00 38.41 2.74
424 429 7.787028 ACCATACAAAAAGGTGTTAAATGTGT 58.213 30.769 0.00 0.00 33.57 3.72
431 436 8.158132 TGTCTCATACCATACAAAAAGGTGTTA 58.842 33.333 0.00 0.00 36.87 2.41
491 497 3.446873 ACAACATCTCAAAAAGGTGCACA 59.553 39.130 20.43 0.00 40.00 4.57
495 501 5.649557 TGAACACAACATCTCAAAAAGGTG 58.350 37.500 0.00 0.00 42.28 4.00
498 504 9.693157 GAAAAATGAACACAACATCTCAAAAAG 57.307 29.630 0.00 0.00 0.00 2.27
504 510 4.917415 CGGGAAAAATGAACACAACATCTC 59.083 41.667 0.00 0.00 0.00 2.75
524 530 2.094078 ACAATGATTTGTGCCATTCGGG 60.094 45.455 0.00 0.00 44.36 5.14
525 531 3.235157 ACAATGATTTGTGCCATTCGG 57.765 42.857 0.00 0.00 44.36 4.30
618 629 8.675705 TCACATCATTCAGAAAAGTTTCAGTA 57.324 30.769 6.56 0.00 39.61 2.74
653 664 7.757097 TTACAAAGTTTGCGCAATTTCTTTA 57.243 28.000 29.47 20.48 0.00 1.85
654 665 6.654793 TTACAAAGTTTGCGCAATTTCTTT 57.345 29.167 25.64 26.55 0.00 2.52
657 668 4.840239 GCATTACAAAGTTTGCGCAATTTC 59.160 37.500 25.64 16.82 0.00 2.17
660 671 3.388308 TGCATTACAAAGTTTGCGCAAT 58.612 36.364 25.64 10.49 37.92 3.56
662 673 2.392821 CTGCATTACAAAGTTTGCGCA 58.607 42.857 15.59 5.66 37.92 6.09
663 674 1.124839 GCTGCATTACAAAGTTTGCGC 59.875 47.619 15.59 12.92 37.92 6.09
664 675 2.392821 TGCTGCATTACAAAGTTTGCG 58.607 42.857 15.59 3.37 37.92 4.85
665 676 3.383761 ACTGCTGCATTACAAAGTTTGC 58.616 40.909 15.59 2.42 35.67 3.68
666 677 7.596248 AGAAATACTGCTGCATTACAAAGTTTG 59.404 33.333 14.13 14.13 0.00 2.93
669 680 6.402550 CGAGAAATACTGCTGCATTACAAAGT 60.403 38.462 1.31 0.00 0.00 2.66
670 681 5.961843 CGAGAAATACTGCTGCATTACAAAG 59.038 40.000 1.31 0.00 0.00 2.77
733 1276 1.731433 CCTCAATGCGGCCCAGAATG 61.731 60.000 0.00 0.00 0.00 2.67
736 1279 1.992834 TACCTCAATGCGGCCCAGA 60.993 57.895 0.00 0.00 0.00 3.86
737 1280 1.819632 GTACCTCAATGCGGCCCAG 60.820 63.158 0.00 0.00 0.00 4.45
738 1281 2.270850 GTACCTCAATGCGGCCCA 59.729 61.111 0.00 0.00 0.00 5.36
739 1282 2.516225 GGTACCTCAATGCGGCCC 60.516 66.667 4.06 0.00 0.00 5.80
793 2442 3.667217 ATCCCTTGCAATGCGGCCT 62.667 57.895 0.00 0.00 0.00 5.19
813 2462 1.136565 CAATTAGTGCAACGGCCCG 59.863 57.895 0.00 0.00 45.86 6.13
829 2478 3.769739 TTGAGAAAGAGCTACCTGCAA 57.230 42.857 0.00 0.00 45.94 4.08
830 2479 3.769739 TTTGAGAAAGAGCTACCTGCA 57.230 42.857 0.00 0.00 45.94 4.41
984 3560 0.756294 ACATCACTGTCGGTGGAACA 59.244 50.000 11.94 0.00 45.38 3.18
985 3561 1.429463 GACATCACTGTCGGTGGAAC 58.571 55.000 11.94 0.00 45.38 3.62
1079 3655 1.303561 GAGGCAATGGTGGTGCTCA 60.304 57.895 0.00 0.00 41.88 4.26
1109 3685 1.000993 ATCTGAGTCCTGGAGCGGT 59.999 57.895 0.00 0.00 0.00 5.68
1114 3690 4.323569 ACTTGTAGATCTGAGTCCTGGA 57.676 45.455 5.18 0.00 0.00 3.86
1117 3693 5.442391 GAGGTACTTGTAGATCTGAGTCCT 58.558 45.833 5.18 13.49 41.55 3.85
1334 3914 0.403271 ACCAGAGCCAGAACAAGCAT 59.597 50.000 0.00 0.00 0.00 3.79
1496 4114 3.254657 ACACAGAGAGAGACTGCACTAAC 59.745 47.826 0.00 0.00 38.74 2.34
1561 4195 1.004745 ACACACTCCATCATCCAACCC 59.995 52.381 0.00 0.00 0.00 4.11
1566 4200 3.375299 GCAAGTTACACACTCCATCATCC 59.625 47.826 0.00 0.00 32.94 3.51
1569 4203 2.412870 CGCAAGTTACACACTCCATCA 58.587 47.619 0.00 0.00 32.94 3.07
1580 4214 2.561373 GGCACAGCCGCAAGTTAC 59.439 61.111 0.00 0.00 39.62 2.50
1620 4287 3.792956 GTGGATCATATTTTGCAAGCGTG 59.207 43.478 0.00 0.00 0.00 5.34
1621 4288 3.696051 AGTGGATCATATTTTGCAAGCGT 59.304 39.130 0.00 0.00 0.00 5.07
1622 4289 4.297299 AGTGGATCATATTTTGCAAGCG 57.703 40.909 0.00 0.00 0.00 4.68
1623 4290 6.742109 ACATAGTGGATCATATTTTGCAAGC 58.258 36.000 0.00 0.00 0.00 4.01
1624 4291 9.060347 ACTACATAGTGGATCATATTTTGCAAG 57.940 33.333 0.00 0.00 34.72 4.01
1625 4292 8.978874 ACTACATAGTGGATCATATTTTGCAA 57.021 30.769 0.00 0.00 34.72 4.08
1633 4300 9.768215 TCATGGATTACTACATAGTGGATCATA 57.232 33.333 14.22 7.26 37.10 2.15
1634 4301 8.670521 TCATGGATTACTACATAGTGGATCAT 57.329 34.615 14.22 6.71 37.10 2.45
1635 4302 7.310052 GCTCATGGATTACTACATAGTGGATCA 60.310 40.741 14.22 5.25 37.10 2.92
1636 4303 7.038659 GCTCATGGATTACTACATAGTGGATC 58.961 42.308 1.66 5.54 37.10 3.36
1637 4304 6.498303 TGCTCATGGATTACTACATAGTGGAT 59.502 38.462 1.66 0.00 37.10 3.41
1638 4305 5.838521 TGCTCATGGATTACTACATAGTGGA 59.161 40.000 1.66 0.00 37.10 4.02
1639 4306 5.928839 GTGCTCATGGATTACTACATAGTGG 59.071 44.000 1.66 0.00 37.10 4.00
1640 4307 6.753180 AGTGCTCATGGATTACTACATAGTG 58.247 40.000 1.66 0.00 37.10 2.74
1641 4308 6.985653 AGTGCTCATGGATTACTACATAGT 57.014 37.500 0.00 0.00 40.24 2.12
1642 4309 7.212976 ACAAGTGCTCATGGATTACTACATAG 58.787 38.462 0.00 0.00 0.00 2.23
1643 4310 7.124573 ACAAGTGCTCATGGATTACTACATA 57.875 36.000 0.00 0.00 0.00 2.29
1644 4311 5.994250 ACAAGTGCTCATGGATTACTACAT 58.006 37.500 0.00 0.00 0.00 2.29
1645 4312 5.420725 ACAAGTGCTCATGGATTACTACA 57.579 39.130 0.00 0.00 0.00 2.74
1646 4313 7.437748 AGATACAAGTGCTCATGGATTACTAC 58.562 38.462 0.00 0.00 0.00 2.73
1647 4314 7.603180 AGATACAAGTGCTCATGGATTACTA 57.397 36.000 0.00 0.00 0.00 1.82
1648 4315 6.491714 AGATACAAGTGCTCATGGATTACT 57.508 37.500 0.00 0.00 0.00 2.24
1782 4453 3.664888 TTGGCATGGGCAGGAGCT 61.665 61.111 0.00 0.00 43.71 4.09
1803 4474 0.458889 GCACGCCACATGAATGCAAT 60.459 50.000 0.00 0.00 36.30 3.56
1844 4515 3.749665 TTTGAAAGTTTGGAGCATGGG 57.250 42.857 0.00 0.00 0.00 4.00
1883 4555 9.726438 TCCCAACAAAAATCAGAGTTTTAAAAA 57.274 25.926 8.22 0.00 31.43 1.94
1884 4556 9.726438 TTCCCAACAAAAATCAGAGTTTTAAAA 57.274 25.926 8.22 0.00 31.43 1.52
1885 4557 9.898152 ATTCCCAACAAAAATCAGAGTTTTAAA 57.102 25.926 8.22 0.00 31.43 1.52
1886 4558 9.323985 CATTCCCAACAAAAATCAGAGTTTTAA 57.676 29.630 8.22 0.00 31.43 1.52
1887 4559 8.482128 ACATTCCCAACAAAAATCAGAGTTTTA 58.518 29.630 8.22 0.00 31.43 1.52
1888 4560 7.337938 ACATTCCCAACAAAAATCAGAGTTTT 58.662 30.769 2.67 2.67 32.94 2.43
1892 4564 6.514947 TGAACATTCCCAACAAAAATCAGAG 58.485 36.000 0.00 0.00 0.00 3.35
1985 4659 3.678056 TTCCATAGGCAGGTAATAGCG 57.322 47.619 0.00 0.00 0.00 4.26
1986 4660 5.316987 ACATTTCCATAGGCAGGTAATAGC 58.683 41.667 0.00 0.00 0.00 2.97
1987 4661 5.639506 CGACATTTCCATAGGCAGGTAATAG 59.360 44.000 0.00 0.00 0.00 1.73
1988 4662 5.547465 CGACATTTCCATAGGCAGGTAATA 58.453 41.667 0.00 0.00 0.00 0.98
1989 4663 4.389374 CGACATTTCCATAGGCAGGTAAT 58.611 43.478 0.00 0.00 0.00 1.89
1991 4665 2.484770 GCGACATTTCCATAGGCAGGTA 60.485 50.000 0.00 0.00 0.00 3.08
1992 4666 1.747206 GCGACATTTCCATAGGCAGGT 60.747 52.381 0.00 0.00 0.00 4.00
1993 4667 0.947244 GCGACATTTCCATAGGCAGG 59.053 55.000 0.00 0.00 0.00 4.85
1994 4668 0.947244 GGCGACATTTCCATAGGCAG 59.053 55.000 0.00 0.00 0.00 4.85
1995 4669 0.546122 AGGCGACATTTCCATAGGCA 59.454 50.000 0.00 0.00 0.00 4.75
1996 4670 1.230324 GAGGCGACATTTCCATAGGC 58.770 55.000 0.00 0.00 0.00 3.93
1997 4671 1.417890 AGGAGGCGACATTTCCATAGG 59.582 52.381 0.00 0.00 33.32 2.57
1998 4672 2.366916 AGAGGAGGCGACATTTCCATAG 59.633 50.000 0.00 0.00 33.32 2.23
1999 4673 2.103094 CAGAGGAGGCGACATTTCCATA 59.897 50.000 0.00 0.00 33.32 2.74
2000 4674 1.134280 CAGAGGAGGCGACATTTCCAT 60.134 52.381 0.00 0.00 33.32 3.41
2001 4675 0.250234 CAGAGGAGGCGACATTTCCA 59.750 55.000 0.00 0.00 33.32 3.53
2002 4676 0.250513 ACAGAGGAGGCGACATTTCC 59.749 55.000 0.00 0.00 0.00 3.13
2003 4677 2.961526 TACAGAGGAGGCGACATTTC 57.038 50.000 0.00 0.00 0.00 2.17
2004 4678 5.163301 ACATTATACAGAGGAGGCGACATTT 60.163 40.000 0.00 0.00 0.00 2.32
2005 4679 4.345257 ACATTATACAGAGGAGGCGACATT 59.655 41.667 0.00 0.00 0.00 2.71
2006 4680 3.898123 ACATTATACAGAGGAGGCGACAT 59.102 43.478 0.00 0.00 0.00 3.06
2007 4681 3.068165 CACATTATACAGAGGAGGCGACA 59.932 47.826 0.00 0.00 0.00 4.35
2008 4682 3.068307 ACACATTATACAGAGGAGGCGAC 59.932 47.826 0.00 0.00 0.00 5.19
2009 4683 3.296854 ACACATTATACAGAGGAGGCGA 58.703 45.455 0.00 0.00 0.00 5.54
2010 4684 3.735237 ACACATTATACAGAGGAGGCG 57.265 47.619 0.00 0.00 0.00 5.52
2011 4685 6.992715 ACAAATACACATTATACAGAGGAGGC 59.007 38.462 0.00 0.00 0.00 4.70
2012 4686 8.830580 CAACAAATACACATTATACAGAGGAGG 58.169 37.037 0.00 0.00 0.00 4.30
2013 4687 9.599866 TCAACAAATACACATTATACAGAGGAG 57.400 33.333 0.00 0.00 0.00 3.69
2023 4697 9.636879 CATCAACCAATCAACAAATACACATTA 57.363 29.630 0.00 0.00 0.00 1.90
2024 4698 8.366401 TCATCAACCAATCAACAAATACACATT 58.634 29.630 0.00 0.00 0.00 2.71
2025 4699 7.894708 TCATCAACCAATCAACAAATACACAT 58.105 30.769 0.00 0.00 0.00 3.21
2026 4700 7.282332 TCATCAACCAATCAACAAATACACA 57.718 32.000 0.00 0.00 0.00 3.72
2027 4701 8.586570 TTTCATCAACCAATCAACAAATACAC 57.413 30.769 0.00 0.00 0.00 2.90
2028 4702 9.421806 GATTTCATCAACCAATCAACAAATACA 57.578 29.630 0.00 0.00 0.00 2.29
2029 4703 9.421806 TGATTTCATCAACCAATCAACAAATAC 57.578 29.630 0.00 0.00 34.66 1.89
2030 4704 9.993454 TTGATTTCATCAACCAATCAACAAATA 57.007 25.926 3.05 0.00 43.84 1.40
2031 4705 8.905660 TTGATTTCATCAACCAATCAACAAAT 57.094 26.923 3.05 0.00 43.84 2.32
2044 4718 6.918626 TGGAATAGCGTTTTGATTTCATCAA 58.081 32.000 0.00 0.00 46.77 2.57
2045 4719 6.507958 TGGAATAGCGTTTTGATTTCATCA 57.492 33.333 0.00 0.00 37.55 3.07
2046 4720 7.168135 GGATTGGAATAGCGTTTTGATTTCATC 59.832 37.037 0.00 0.00 0.00 2.92
2047 4721 6.980397 GGATTGGAATAGCGTTTTGATTTCAT 59.020 34.615 0.00 0.00 0.00 2.57
2048 4722 6.152661 AGGATTGGAATAGCGTTTTGATTTCA 59.847 34.615 0.00 0.00 0.00 2.69
2049 4723 6.564328 AGGATTGGAATAGCGTTTTGATTTC 58.436 36.000 0.00 0.00 0.00 2.17
2050 4724 6.530019 AGGATTGGAATAGCGTTTTGATTT 57.470 33.333 0.00 0.00 0.00 2.17
2051 4725 7.040409 GGATAGGATTGGAATAGCGTTTTGATT 60.040 37.037 0.00 0.00 0.00 2.57
2052 4726 6.431234 GGATAGGATTGGAATAGCGTTTTGAT 59.569 38.462 0.00 0.00 0.00 2.57
2053 4727 5.763204 GGATAGGATTGGAATAGCGTTTTGA 59.237 40.000 0.00 0.00 0.00 2.69
2054 4728 5.765182 AGGATAGGATTGGAATAGCGTTTTG 59.235 40.000 0.00 0.00 0.00 2.44
2055 4729 5.941788 AGGATAGGATTGGAATAGCGTTTT 58.058 37.500 0.00 0.00 0.00 2.43
2056 4730 5.071788 TGAGGATAGGATTGGAATAGCGTTT 59.928 40.000 0.00 0.00 0.00 3.60
2057 4731 4.593206 TGAGGATAGGATTGGAATAGCGTT 59.407 41.667 0.00 0.00 0.00 4.84
2058 4732 4.160329 TGAGGATAGGATTGGAATAGCGT 58.840 43.478 0.00 0.00 0.00 5.07
2059 4733 4.808414 TGAGGATAGGATTGGAATAGCG 57.192 45.455 0.00 0.00 0.00 4.26
2060 4734 5.435291 CCATGAGGATAGGATTGGAATAGC 58.565 45.833 0.00 0.00 36.89 2.97
2061 4735 5.631009 GCCCATGAGGATAGGATTGGAATAG 60.631 48.000 0.00 0.00 38.24 1.73
2062 4736 4.228210 GCCCATGAGGATAGGATTGGAATA 59.772 45.833 0.00 0.00 38.24 1.75
2063 4737 3.011032 GCCCATGAGGATAGGATTGGAAT 59.989 47.826 0.00 0.00 38.24 3.01
2064 4738 2.376518 GCCCATGAGGATAGGATTGGAA 59.623 50.000 0.00 0.00 38.24 3.53
2065 4739 1.988107 GCCCATGAGGATAGGATTGGA 59.012 52.381 0.00 0.00 38.24 3.53
2066 4740 1.706866 TGCCCATGAGGATAGGATTGG 59.293 52.381 0.00 0.00 38.24 3.16
2067 4741 3.009805 TCATGCCCATGAGGATAGGATTG 59.990 47.826 6.85 0.00 42.42 2.67
2068 4742 3.262842 TCATGCCCATGAGGATAGGATT 58.737 45.455 6.85 0.00 42.42 3.01
2069 4743 2.925253 TCATGCCCATGAGGATAGGAT 58.075 47.619 6.85 0.00 42.42 3.24
2070 4744 2.421197 TCATGCCCATGAGGATAGGA 57.579 50.000 6.85 0.00 42.42 2.94
2078 4752 7.448420 TGAAATTTAAAAACTCATGCCCATGA 58.552 30.769 10.28 10.28 44.83 3.07
2079 4753 7.670009 TGAAATTTAAAAACTCATGCCCATG 57.330 32.000 1.86 1.86 40.09 3.66
2080 4754 8.688747 TTTGAAATTTAAAAACTCATGCCCAT 57.311 26.923 0.00 0.00 0.00 4.00
2081 4755 8.688747 ATTTGAAATTTAAAAACTCATGCCCA 57.311 26.923 4.79 0.00 0.00 5.36
2082 4756 9.396938 CAATTTGAAATTTAAAAACTCATGCCC 57.603 29.630 4.79 0.00 0.00 5.36
2104 4778 9.488124 CATGTTTTGTTCAAATTTCGTTCAATT 57.512 25.926 0.00 0.00 0.00 2.32
2105 4779 8.877779 TCATGTTTTGTTCAAATTTCGTTCAAT 58.122 25.926 0.00 0.00 0.00 2.57
2106 4780 8.244494 TCATGTTTTGTTCAAATTTCGTTCAA 57.756 26.923 0.00 0.00 0.00 2.69
2107 4781 7.009999 CCTCATGTTTTGTTCAAATTTCGTTCA 59.990 33.333 0.00 0.00 0.00 3.18
2108 4782 7.010091 ACCTCATGTTTTGTTCAAATTTCGTTC 59.990 33.333 0.00 0.00 0.00 3.95
2109 4783 6.816140 ACCTCATGTTTTGTTCAAATTTCGTT 59.184 30.769 0.00 0.00 0.00 3.85
2110 4784 6.255453 CACCTCATGTTTTGTTCAAATTTCGT 59.745 34.615 0.00 0.00 0.00 3.85
2111 4785 6.255453 ACACCTCATGTTTTGTTCAAATTTCG 59.745 34.615 0.00 0.00 38.98 3.46
2112 4786 7.538303 ACACCTCATGTTTTGTTCAAATTTC 57.462 32.000 0.00 0.00 38.98 2.17
2128 4802 4.090761 AGACACATGAACAACACCTCAT 57.909 40.909 0.00 0.00 32.40 2.90
2129 4803 3.558931 AGACACATGAACAACACCTCA 57.441 42.857 0.00 0.00 0.00 3.86
2130 4804 4.335315 TGAAAGACACATGAACAACACCTC 59.665 41.667 0.00 0.00 0.00 3.85
2131 4805 4.269183 TGAAAGACACATGAACAACACCT 58.731 39.130 0.00 0.00 0.00 4.00
2132 4806 4.630894 TGAAAGACACATGAACAACACC 57.369 40.909 0.00 0.00 0.00 4.16
2133 4807 5.398169 TGTTGAAAGACACATGAACAACAC 58.602 37.500 0.00 0.00 40.25 3.32
2134 4808 5.635417 TGTTGAAAGACACATGAACAACA 57.365 34.783 0.00 0.00 41.93 3.33
2135 4809 6.033831 CAGTTGTTGAAAGACACATGAACAAC 59.966 38.462 19.78 19.78 41.54 3.32
2136 4810 6.092092 CAGTTGTTGAAAGACACATGAACAA 58.908 36.000 0.00 0.00 0.00 2.83
2137 4811 5.639757 CAGTTGTTGAAAGACACATGAACA 58.360 37.500 0.00 0.00 0.00 3.18
2138 4812 4.500477 GCAGTTGTTGAAAGACACATGAAC 59.500 41.667 0.00 0.00 0.00 3.18
2139 4813 4.157472 TGCAGTTGTTGAAAGACACATGAA 59.843 37.500 0.00 0.00 0.00 2.57
2140 4814 3.693578 TGCAGTTGTTGAAAGACACATGA 59.306 39.130 0.00 0.00 0.00 3.07
2141 4815 4.031418 TGCAGTTGTTGAAAGACACATG 57.969 40.909 0.00 0.00 0.00 3.21
2142 4816 4.158394 ACTTGCAGTTGTTGAAAGACACAT 59.842 37.500 2.01 0.00 44.17 3.21
2143 4817 3.505680 ACTTGCAGTTGTTGAAAGACACA 59.494 39.130 2.01 0.00 44.17 3.72
2144 4818 4.096732 ACTTGCAGTTGTTGAAAGACAC 57.903 40.909 2.01 0.00 44.17 3.67
2145 4819 6.017440 GGTATACTTGCAGTTGTTGAAAGACA 60.017 38.462 2.25 0.00 44.17 3.41
2146 4820 6.017440 TGGTATACTTGCAGTTGTTGAAAGAC 60.017 38.462 2.25 0.00 44.17 3.01
2147 4821 6.058833 TGGTATACTTGCAGTTGTTGAAAGA 58.941 36.000 2.25 0.00 44.17 2.52
2148 4822 6.312399 TGGTATACTTGCAGTTGTTGAAAG 57.688 37.500 2.25 0.00 46.44 2.62
2149 4823 6.892658 ATGGTATACTTGCAGTTGTTGAAA 57.107 33.333 2.25 0.00 0.00 2.69
2150 4824 6.892658 AATGGTATACTTGCAGTTGTTGAA 57.107 33.333 2.25 0.00 0.00 2.69
2151 4825 6.892658 AAATGGTATACTTGCAGTTGTTGA 57.107 33.333 2.25 0.00 0.00 3.18
2152 4826 7.370383 AGAAAATGGTATACTTGCAGTTGTTG 58.630 34.615 2.25 0.00 0.00 3.33
2153 4827 7.524717 AGAAAATGGTATACTTGCAGTTGTT 57.475 32.000 2.25 0.00 0.00 2.83
2154 4828 7.524717 AAGAAAATGGTATACTTGCAGTTGT 57.475 32.000 2.25 0.00 0.00 3.32
2155 4829 8.081633 TGAAAGAAAATGGTATACTTGCAGTTG 58.918 33.333 2.25 0.00 0.00 3.16
2156 4830 8.177119 TGAAAGAAAATGGTATACTTGCAGTT 57.823 30.769 2.25 0.00 0.00 3.16
2157 4831 7.759489 TGAAAGAAAATGGTATACTTGCAGT 57.241 32.000 2.25 0.00 0.00 4.40
2158 4832 8.461222 TCATGAAAGAAAATGGTATACTTGCAG 58.539 33.333 2.25 0.00 31.04 4.41
2159 4833 8.347004 TCATGAAAGAAAATGGTATACTTGCA 57.653 30.769 2.25 0.00 31.89 4.08
2160 4834 9.638239 TTTCATGAAAGAAAATGGTATACTTGC 57.362 29.630 16.91 0.00 34.77 4.01
2162 4836 9.840427 CGTTTCATGAAAGAAAATGGTATACTT 57.160 29.630 21.05 0.00 39.05 2.24
2163 4837 8.458843 CCGTTTCATGAAAGAAAATGGTATACT 58.541 33.333 21.05 0.00 39.05 2.12
2164 4838 7.700656 CCCGTTTCATGAAAGAAAATGGTATAC 59.299 37.037 21.05 4.72 39.05 1.47
2165 4839 7.147983 CCCCGTTTCATGAAAGAAAATGGTATA 60.148 37.037 21.05 0.00 39.05 1.47
2166 4840 6.350949 CCCCGTTTCATGAAAGAAAATGGTAT 60.351 38.462 21.05 0.00 39.05 2.73
2167 4841 5.047660 CCCCGTTTCATGAAAGAAAATGGTA 60.048 40.000 21.05 0.00 39.05 3.25
2168 4842 4.262420 CCCCGTTTCATGAAAGAAAATGGT 60.262 41.667 21.05 0.00 39.05 3.55
2169 4843 4.244862 CCCCGTTTCATGAAAGAAAATGG 58.755 43.478 21.05 13.70 39.05 3.16
2170 4844 4.881920 ACCCCGTTTCATGAAAGAAAATG 58.118 39.130 21.05 10.19 39.05 2.32
2171 4845 4.586841 TGACCCCGTTTCATGAAAGAAAAT 59.413 37.500 21.05 7.43 39.05 1.82
2172 4846 3.954904 TGACCCCGTTTCATGAAAGAAAA 59.045 39.130 21.05 0.00 39.05 2.29
2173 4847 3.556999 TGACCCCGTTTCATGAAAGAAA 58.443 40.909 21.05 0.00 35.28 2.52
2174 4848 3.216187 TGACCCCGTTTCATGAAAGAA 57.784 42.857 21.05 0.00 0.00 2.52
2175 4849 2.940994 TGACCCCGTTTCATGAAAGA 57.059 45.000 21.05 0.00 0.00 2.52
2176 4850 4.519540 AAATGACCCCGTTTCATGAAAG 57.480 40.909 21.05 14.19 33.84 2.62
2177 4851 4.262249 GGAAAATGACCCCGTTTCATGAAA 60.262 41.667 16.91 16.91 33.84 2.69
2178 4852 3.257127 GGAAAATGACCCCGTTTCATGAA 59.743 43.478 3.38 3.38 33.84 2.57
2179 4853 2.823154 GGAAAATGACCCCGTTTCATGA 59.177 45.455 0.00 0.00 33.84 3.07
2180 4854 2.560542 TGGAAAATGACCCCGTTTCATG 59.439 45.455 0.00 0.00 33.84 3.07
2181 4855 2.825532 CTGGAAAATGACCCCGTTTCAT 59.174 45.455 0.00 0.00 35.09 2.57
2182 4856 2.235016 CTGGAAAATGACCCCGTTTCA 58.765 47.619 0.00 0.00 31.51 2.69
2183 4857 1.067846 GCTGGAAAATGACCCCGTTTC 60.068 52.381 0.00 0.00 31.51 2.78
2184 4858 0.966179 GCTGGAAAATGACCCCGTTT 59.034 50.000 0.00 0.00 33.18 3.60
2185 4859 1.241315 CGCTGGAAAATGACCCCGTT 61.241 55.000 0.00 0.00 0.00 4.44
2186 4860 1.674322 CGCTGGAAAATGACCCCGT 60.674 57.895 0.00 0.00 0.00 5.28
2187 4861 3.051392 GCGCTGGAAAATGACCCCG 62.051 63.158 0.00 0.00 0.00 5.73
2188 4862 2.710902 GGCGCTGGAAAATGACCCC 61.711 63.158 7.64 0.00 0.00 4.95
2189 4863 1.531739 TTGGCGCTGGAAAATGACCC 61.532 55.000 7.64 0.00 0.00 4.46
2190 4864 0.316841 TTTGGCGCTGGAAAATGACC 59.683 50.000 7.64 0.00 0.00 4.02
2191 4865 1.994779 CATTTGGCGCTGGAAAATGAC 59.005 47.619 22.31 0.50 41.64 3.06
2192 4866 1.891811 TCATTTGGCGCTGGAAAATGA 59.108 42.857 23.93 23.93 44.11 2.57
2193 4867 2.367030 TCATTTGGCGCTGGAAAATG 57.633 45.000 21.48 21.48 40.86 2.32
2194 4868 3.399440 TTTCATTTGGCGCTGGAAAAT 57.601 38.095 7.64 6.23 0.00 1.82
2195 4869 2.898729 TTTCATTTGGCGCTGGAAAA 57.101 40.000 7.64 3.93 0.00 2.29
2196 4870 2.612471 CCATTTCATTTGGCGCTGGAAA 60.612 45.455 7.64 10.70 32.66 3.13
2197 4871 1.067000 CCATTTCATTTGGCGCTGGAA 60.067 47.619 7.64 0.00 0.00 3.53
2198 4872 0.531657 CCATTTCATTTGGCGCTGGA 59.468 50.000 7.64 0.00 0.00 3.86
2199 4873 0.247185 ACCATTTCATTTGGCGCTGG 59.753 50.000 7.64 6.13 37.81 4.85
2200 4874 1.337074 ACACCATTTCATTTGGCGCTG 60.337 47.619 7.64 0.00 37.81 5.18
2201 4875 0.968405 ACACCATTTCATTTGGCGCT 59.032 45.000 7.64 0.00 37.81 5.92
2202 4876 1.336702 TGACACCATTTCATTTGGCGC 60.337 47.619 0.00 0.00 37.81 6.53
2203 4877 2.721274 TGACACCATTTCATTTGGCG 57.279 45.000 0.00 0.00 37.81 5.69
2204 4878 5.663456 ACATATGACACCATTTCATTTGGC 58.337 37.500 10.38 0.00 36.98 4.52
2205 4879 9.897744 GTATACATATGACACCATTTCATTTGG 57.102 33.333 10.38 0.00 36.98 3.28
2213 4887 9.653287 CCGAATAAGTATACATATGACACCATT 57.347 33.333 10.38 6.51 34.31 3.16
2214 4888 9.031537 TCCGAATAAGTATACATATGACACCAT 57.968 33.333 10.38 0.00 36.81 3.55
2215 4889 8.411991 TCCGAATAAGTATACATATGACACCA 57.588 34.615 10.38 0.00 0.00 4.17
2216 4890 8.521176 ACTCCGAATAAGTATACATATGACACC 58.479 37.037 10.38 0.00 0.00 4.16
2217 4891 9.343103 CACTCCGAATAAGTATACATATGACAC 57.657 37.037 10.38 4.01 0.00 3.67
2218 4892 9.292195 TCACTCCGAATAAGTATACATATGACA 57.708 33.333 10.38 0.00 0.00 3.58
2224 4898 9.640963 GCTTAATCACTCCGAATAAGTATACAT 57.359 33.333 5.50 0.00 38.75 2.29
2225 4899 8.857098 AGCTTAATCACTCCGAATAAGTATACA 58.143 33.333 5.50 0.00 38.75 2.29
2226 4900 9.694137 AAGCTTAATCACTCCGAATAAGTATAC 57.306 33.333 0.00 0.00 38.75 1.47
2227 4901 9.692749 CAAGCTTAATCACTCCGAATAAGTATA 57.307 33.333 0.00 0.00 38.75 1.47
2228 4902 8.421784 TCAAGCTTAATCACTCCGAATAAGTAT 58.578 33.333 0.00 0.00 38.75 2.12
2229 4903 7.778083 TCAAGCTTAATCACTCCGAATAAGTA 58.222 34.615 0.00 0.00 38.75 2.24
2230 4904 6.640518 TCAAGCTTAATCACTCCGAATAAGT 58.359 36.000 0.00 0.00 38.75 2.24
2231 4905 7.571026 CATCAAGCTTAATCACTCCGAATAAG 58.429 38.462 0.00 0.00 39.29 1.73
2232 4906 6.017934 GCATCAAGCTTAATCACTCCGAATAA 60.018 38.462 0.00 0.00 41.15 1.40
2233 4907 5.466728 GCATCAAGCTTAATCACTCCGAATA 59.533 40.000 0.00 0.00 41.15 1.75
2234 4908 4.274459 GCATCAAGCTTAATCACTCCGAAT 59.726 41.667 0.00 0.00 41.15 3.34
2235 4909 3.623060 GCATCAAGCTTAATCACTCCGAA 59.377 43.478 0.00 0.00 41.15 4.30
2236 4910 3.198068 GCATCAAGCTTAATCACTCCGA 58.802 45.455 0.00 0.00 41.15 4.55
2237 4911 3.599046 GCATCAAGCTTAATCACTCCG 57.401 47.619 0.00 0.00 41.15 4.63
2249 4923 0.029035 CAAGATCGGCAGCATCAAGC 59.971 55.000 0.00 0.00 46.19 4.01
2250 4924 1.376543 ACAAGATCGGCAGCATCAAG 58.623 50.000 0.00 0.00 0.00 3.02
2251 4925 1.739466 GAACAAGATCGGCAGCATCAA 59.261 47.619 0.00 0.00 0.00 2.57
2252 4926 1.338960 TGAACAAGATCGGCAGCATCA 60.339 47.619 0.00 0.00 0.00 3.07
2253 4927 1.063174 GTGAACAAGATCGGCAGCATC 59.937 52.381 0.00 0.00 0.00 3.91
2254 4928 1.089920 GTGAACAAGATCGGCAGCAT 58.910 50.000 0.00 0.00 0.00 3.79
2255 4929 0.250252 TGTGAACAAGATCGGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
2256 4930 0.874390 TTGTGAACAAGATCGGCAGC 59.126 50.000 0.00 0.00 0.00 5.25
2257 4931 4.183865 TCTATTGTGAACAAGATCGGCAG 58.816 43.478 1.94 0.00 39.47 4.85
2258 4932 4.183865 CTCTATTGTGAACAAGATCGGCA 58.816 43.478 1.94 0.00 39.47 5.69
2259 4933 3.557595 CCTCTATTGTGAACAAGATCGGC 59.442 47.826 1.94 0.00 39.47 5.54
2260 4934 4.122776 CCCTCTATTGTGAACAAGATCGG 58.877 47.826 1.94 1.33 39.47 4.18
2261 4935 4.122776 CCCCTCTATTGTGAACAAGATCG 58.877 47.826 1.94 0.00 39.47 3.69
2262 4936 4.164221 TCCCCCTCTATTGTGAACAAGATC 59.836 45.833 1.94 0.00 39.47 2.75
2263 4937 4.111577 TCCCCCTCTATTGTGAACAAGAT 58.888 43.478 1.94 0.00 39.47 2.40
2264 4938 3.526899 TCCCCCTCTATTGTGAACAAGA 58.473 45.455 1.94 0.00 39.47 3.02
2265 4939 4.510167 ATCCCCCTCTATTGTGAACAAG 57.490 45.455 1.94 0.00 39.47 3.16
2266 4940 6.590656 ATTATCCCCCTCTATTGTGAACAA 57.409 37.500 0.00 0.00 40.51 2.83
2267 4941 7.699709 TTATTATCCCCCTCTATTGTGAACA 57.300 36.000 0.00 0.00 0.00 3.18
2268 4942 7.996644 TGTTTATTATCCCCCTCTATTGTGAAC 59.003 37.037 0.00 0.00 0.00 3.18
2269 4943 7.996644 GTGTTTATTATCCCCCTCTATTGTGAA 59.003 37.037 0.00 0.00 0.00 3.18
2270 4944 7.128109 TGTGTTTATTATCCCCCTCTATTGTGA 59.872 37.037 0.00 0.00 0.00 3.58
2271 4945 7.287061 TGTGTTTATTATCCCCCTCTATTGTG 58.713 38.462 0.00 0.00 0.00 3.33
2272 4946 7.128883 ACTGTGTTTATTATCCCCCTCTATTGT 59.871 37.037 0.00 0.00 0.00 2.71
2273 4947 7.445402 CACTGTGTTTATTATCCCCCTCTATTG 59.555 40.741 0.00 0.00 0.00 1.90
2274 4948 7.421382 CCACTGTGTTTATTATCCCCCTCTATT 60.421 40.741 7.08 0.00 0.00 1.73
2275 4949 6.044404 CCACTGTGTTTATTATCCCCCTCTAT 59.956 42.308 7.08 0.00 0.00 1.98
2276 4950 5.368523 CCACTGTGTTTATTATCCCCCTCTA 59.631 44.000 7.08 0.00 0.00 2.43
2277 4951 4.166144 CCACTGTGTTTATTATCCCCCTCT 59.834 45.833 7.08 0.00 0.00 3.69
2278 4952 4.079958 ACCACTGTGTTTATTATCCCCCTC 60.080 45.833 7.08 0.00 0.00 4.30
2279 4953 3.856206 ACCACTGTGTTTATTATCCCCCT 59.144 43.478 7.08 0.00 0.00 4.79
2280 4954 4.245251 ACCACTGTGTTTATTATCCCCC 57.755 45.455 7.08 0.00 0.00 5.40
2281 4955 5.949952 AGAAACCACTGTGTTTATTATCCCC 59.050 40.000 7.08 0.00 38.51 4.81
2282 4956 7.827729 AGTAGAAACCACTGTGTTTATTATCCC 59.172 37.037 7.08 0.00 38.51 3.85
2283 4957 8.665685 CAGTAGAAACCACTGTGTTTATTATCC 58.334 37.037 7.08 0.00 38.51 2.59
2306 4980 9.177608 ACATGTGACAATATAAGCATAAACAGT 57.822 29.630 0.00 0.00 0.00 3.55
2319 4993 9.177608 ACTGCTTACAATTACATGTGACAATAT 57.822 29.630 9.11 0.00 34.75 1.28
2320 4994 8.560355 ACTGCTTACAATTACATGTGACAATA 57.440 30.769 9.11 0.00 34.75 1.90
2321 4995 7.452880 ACTGCTTACAATTACATGTGACAAT 57.547 32.000 9.11 0.00 34.75 2.71
2322 4996 6.875948 ACTGCTTACAATTACATGTGACAA 57.124 33.333 9.11 0.00 34.75 3.18
2323 4997 6.875948 AACTGCTTACAATTACATGTGACA 57.124 33.333 9.11 0.00 34.75 3.58
2324 4998 6.582295 CCAAACTGCTTACAATTACATGTGAC 59.418 38.462 9.11 0.00 34.75 3.67
2325 4999 6.264292 ACCAAACTGCTTACAATTACATGTGA 59.736 34.615 9.11 0.00 34.75 3.58
2326 5000 6.446318 ACCAAACTGCTTACAATTACATGTG 58.554 36.000 9.11 0.00 34.75 3.21
2327 5001 6.648879 ACCAAACTGCTTACAATTACATGT 57.351 33.333 2.69 2.69 37.32 3.21
2328 5002 7.651304 TGAAACCAAACTGCTTACAATTACATG 59.349 33.333 0.00 0.00 0.00 3.21
2329 5003 7.721402 TGAAACCAAACTGCTTACAATTACAT 58.279 30.769 0.00 0.00 0.00 2.29
2330 5004 7.101652 TGAAACCAAACTGCTTACAATTACA 57.898 32.000 0.00 0.00 0.00 2.41
2331 5005 7.704899 AGTTGAAACCAAACTGCTTACAATTAC 59.295 33.333 0.00 0.00 0.00 1.89
2332 5006 7.777095 AGTTGAAACCAAACTGCTTACAATTA 58.223 30.769 0.00 0.00 0.00 1.40
2333 5007 6.639563 AGTTGAAACCAAACTGCTTACAATT 58.360 32.000 0.00 0.00 0.00 2.32
2334 5008 6.220726 AGTTGAAACCAAACTGCTTACAAT 57.779 33.333 0.00 0.00 0.00 2.71
2335 5009 5.652994 AGTTGAAACCAAACTGCTTACAA 57.347 34.783 0.00 0.00 0.00 2.41
2336 5010 5.184096 TGAAGTTGAAACCAAACTGCTTACA 59.816 36.000 0.00 0.00 0.00 2.41
2337 5011 5.515270 GTGAAGTTGAAACCAAACTGCTTAC 59.485 40.000 0.00 0.00 0.00 2.34
2338 5012 5.184096 TGTGAAGTTGAAACCAAACTGCTTA 59.816 36.000 0.00 0.00 0.00 3.09
2339 5013 4.021544 TGTGAAGTTGAAACCAAACTGCTT 60.022 37.500 0.00 0.00 0.00 3.91
2340 5014 3.509575 TGTGAAGTTGAAACCAAACTGCT 59.490 39.130 0.00 0.00 0.00 4.24
2341 5015 3.843999 TGTGAAGTTGAAACCAAACTGC 58.156 40.909 0.00 0.00 0.00 4.40
2342 5016 5.410067 ACATGTGAAGTTGAAACCAAACTG 58.590 37.500 0.00 0.00 0.00 3.16
2343 5017 5.659440 ACATGTGAAGTTGAAACCAAACT 57.341 34.783 0.00 0.00 0.00 2.66
2344 5018 6.720012 AAACATGTGAAGTTGAAACCAAAC 57.280 33.333 0.00 0.00 0.00 2.93
2345 5019 9.442047 AAATAAACATGTGAAGTTGAAACCAAA 57.558 25.926 0.00 0.00 0.00 3.28
2346 5020 9.442047 AAAATAAACATGTGAAGTTGAAACCAA 57.558 25.926 0.00 0.00 0.00 3.67
2347 5021 9.442047 AAAAATAAACATGTGAAGTTGAAACCA 57.558 25.926 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.