>input_sequence_81653
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-------------------------------------------------------ATGTCCACATCCGGTTCGTCCTCCG
TTTCCGCCGACCGGGACATCCTCCCCCTGATCCCCTGCCCGGACTGCGGGGGCCTGAGCACCACCATTGCCTCCCGCGGC
GGCTACCGCTCCAGGACTCAGATCTACAAGTACCTCCGCCGCAGCGTACGTGTTCTT-GCCCATTCCCCTCCAT---TAG
TCGTCCTCCTGCATTTCGCAGCGTCGCAGCTTAATCTGTTCCCCCATTTCGCAGGCTGTTCTTGGCTGGTTCTTCCGCTG
GTCAGACGGGTACGCGCTGGCCGATATTGCAAGGATGACCCTCCTCCTCGGCGTGGCCAATCTGCTCGTCAACATGCTTG
TTCTGGCTCTGGTGCTGCGGCTGCTCGCAAAGCGGAATGCATCTATGGCGTAA---------------------------
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>chr3B_1_TraesCS3B01G093200
CATCCGCGGCCGCCTACGTGCATTGACTCGAGCTTTTGTGCTCACTCGTGTCATGGGCCAAATTTTCGGCTCTTTCATTA
TGTTCAATTTTTCTTTT--GGGAGCTATATATCACTTAGTGCGAGATGTAACTCAGTCTCTTCTTTGGCGCTGGCTACGC
GGTCGCTTTAGCAGGCCAGCTCATTAGGACGGTTTTGGGAGGGTTCTTTATGCCGGTTTTAGAATGTTCCATGCGTTTTT
TTCTCAGTTTCTTCATTGGTTTTTATTTCATTTTTTAGTTTACTTTTTATGCAAATACATGTCAAAAAATTTAGATACAG
GCTGTACATTTTCCATATACATGCACAATTTTTTTTGATGCAAGTTGATTTT-TTTAAATACATGGTGAACATTTGTTCT
TT-AAATAAATGTTAATAATTTGTAAATACACATTTAACACCTTTTTGTATGGTATGAGACA-TTTTTTAAAGGTCATGA
ACATATATCTAAAATGTGTGCACCTTTTTGAGATGTTGTGTTCATTTTTCCCGA--ATGGCACAAATCATTGTTTTAAAC
TTACTGAATATTTTTT---GCATTGTAGAAATTTTTTTCTCAAAATATGCGAATATTTTATTATATGTTACTGAAACTTT
TCTGAATGATGTGAATAATTTTTTAAAGAAATTGCGCAAACTT-------------------------------------
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---------------TGTAATGCAGCAGTATTTCTCGTGGAACATAACACTCGGGCTCACGTCTGCGACAACGGCCATTC
TGGGCCGCATTGAGGTACCCAA----------------------------------------------------------
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-------------------------------------------------------------------------------A
CGATCTGGGCGTTTTGCCACAACGGCCA---------TTCTAGGCCGCATTGCAAGGGATCCGGGCCGTTGCACTAATTG
CAGGTAGCTCTTTCTCAAAAAAAAAACTAATTGCAGGTAGCTGCCCGTCCCCATCTTCCCCCAAGGCTTC-TCTACAAGA
TTCCCCCCA-----------------------------------------------------------------------
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----------------------------------------------------CCCC---CTTCTTCCCCATTTCCACTTC
CACACACCACTTCCCAAATCCAGAGCCTCCCCACCCAGCTGTTCCACCGACAGTGATGTCCACATCCGGTTCGTCCTCCG
TTTCCGCCGACCGGGACATCCTCCCCCTGATCCCCTGCCCGGACTGCGGGGGCCTGAGCACCACCATTGCCTCCCGCGGC
GGCTACCGCTCCAGGACTCAGATCTACAAGTACCTCCGCCGCAGCGTACGTGTTCTT-GCCCATTCCCCTCCAT---TAG
TCGTCCTCCTGCATTTCGCAGCGTCGCAGCTTAATCTGTTCCCCCATTTCGCAGGCTGTTCTTGGCTGGTTCTTCCGCTG
GTCAGACGGGTACGCGCTGGCCGATATTGCAAGGATGACCCTCCTCCTCGGCGTGGCCAATCTGCTCGTCAACATGCTTG
TTCTGGCTCTGGTGCTGCGGCTGCTCGCAAAGCGGAATGCATCTATGGCGTAATCTAATCTAGATGCTGGTGGAT----G
GCCGTAGTATCAGTAGT---------------------------------ATTAGCGTGGTAGTAGTCCCGCCGTGTTAA
-TTAGTGTGGCTGTAGCCCCGCTATGGGCTTTGGTTAGTGCAGTCTCTCTCTGTGTC----------------AAATTAG
TGCGGTCTCTTCAGTGTCAGCAAGCTGTAGCTTTGGGTTGGATGATGGAGTGTGTAA-CTTGCGGCTGTGCCACCATTTG
TC--------------------------------TGGTCTGGTCAGCACGCTTGCAAAATATGATCCACTATGTAGTAAT
CCATGAGCACTTGTATCTAATT---AATGGATGTTGTTTGCCAAGTTACA-TTTGTCAGTATTTTACTGTTTTCCAAATA
TCAAATGAGCACGAGTTGTCACTTCGCCACACCTGCCTCTATTATTGAGGTGAGCTCCTGCCCATGCCAACTGATTGCAT
TCATGTGGCGTGCCGCCAGTACAGATCCTGTGCTCCC-ATGCTCCAAACTTTCAAAAAACTAATTTCAAGTTTTTTTTTA
AAACTCTGATTTTTGTTGGGAATGTTCAAAGGACATGTGTCCATAATCACTAAAAAA--TTCAGATCCCAAATCGAAATA
CACATGTATAAACCAAAACGCTATTACCTGCCTATGGAAATGTCGCCTCCTCTGTATAATGTGTATTTGTTGATTGGTTG
ATGAAATCAAAACGCTATTCCAATCCTATCCTCATGGGCATGAGTTTTTAAATTTCAAATTGAACGAAATTTGAACAAAA
CATGAGGTGTTGTTCATGTGTCTTTCAACAACTGCAAGTATACCATTTTCTTTCATGAAACGGGGTCATTTTCCAGCGCC
AAATGAAATGGTGTCATATGTATACTTATTCGGAGTGATTAAGCTTGATGCTGCCGATCTTGTTCACAATAGAGGGGGAT
AATAAACACAGTGGTTTCTACTGTTTATGCTTATATTGTCACATGTAATTGTAAGCAGTTTGGTTTCAACTTCACATGTT
TATTTTTATTTTTTTCAGACAAGATAA
>chr3A_1
CATCCGCGGCAGCCCACATGCATCCATTCGAGCTTTTCTGCTCACTCATGTCATGGCCCAAAATTTTGGCTCTTTCATTA
TGTTCAATTTTTCTTTATA-GGAGCTATGTATCACTTAGTGCGAGACGTAACTCCGTCTCTTCTCTGGCGCTGGCTATGC
GGTTGCTTTAGTAGGCCAGCTCATTAGGACGGTTCTGGGAAGGTTCTTTATACCGGTTTT--------------------
--------------------------------------------------GCAAATACATGTCAATTTTTTTAAATACTG
GTTGTACATTTTTCGTATACATGCACAATATTTTTTGATACATGTTGATTTCCTTTAAAATCATGGTGAACATTTATTTG
AAAAAATAAATGTTAATGATTTTTAAATGCACATTGAACACTTTTTTGTATGGTATGAGACATTTTTTTAAATGTCATGA
ACATATATCTAAAATGCGTGAACTTTTTTTAGATGCTGTGTTCATTTTTTTCGA--ATGGCACAAATATTTGTTTTAAAC
TTACTGAACTTTTTTTTTTACAGTGTAGACACATTTTTCTCGAAATGTGTGAATATTTTATAATATGTCACTGACATTTT
TCTGAATGTTTTGAATCATTTTTAGAAAAATTATACGAACTTTTTTTAGGCTAATCAC----------------------
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-----ACGAACTTTGTGTAATGCAGCAGTATTTCTCGTGGAACATGACACTCGGGCTGACGTTTGTGAATCATTTAACGA
GCC-------------ACCCAA----------------------------------------------------------
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-------------------------------------------------------------------------------A
CGATCTGAGCCTTTTGCCACAACGGCCACAACGGCCATTCTGGGCCGCATGGCAAGGGATCTGGGCCGTTGCACTAA---
------------------------------TTGCGGGTAGCTGTCCGTCCCCATCTTCCCCCAAGGCTTCTTCTACAAGA
TTCCCCCCA-----------------------------------------------------------------------
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----------------------------------------------------CCCCCTTCTTCTTCCCCATTTGCACTTC
CACACACCACTTCCCCAATCCAGAGCCTCCCCACCCAGCGATTCCACCGACGGCGATGTCCACGTCCGGTTCGTCCTCCG
TTTCTGCCGACCGGGACATCCTCCCCCTGATCCCCTGCCCGGACTGCGGGGGCCAGAGCACCACCATTGCCACTCGCGGC
GGCTCCCGCCCCGGGGCTCAGATCTACAAGAAACTCCGCCACAGCGTACGTGTTCTTGGCCCATTCCCCTCCAT---TAG
TCGTCCTCCTGCATTTCGCAGCGTCGCAGCTTAATCTGTTCCCCCATTTCGCAGGCTGTTCTTGGCTGGTTCTTCCGCTG
GTCAGACGGGTACGCGCTGGCCGATGTTGCAAGGATGACCCTCCTCCTCGGCGTGGCCAATCTGCTCGTCAACCTGCTTG
TTCTGGCTCTCGTGCTGCGGCTGTTCGCAAAGCGGAATGCATCTATGGCGTAATCTAATCTAGATGCTGGTGGGAT---G
GTCGTAGTATCAGTAGT---------------------------------ATTAGCGTGGTAGTAGTCCCGCCGTGTTAA
-TTTGTGTGGCTGTAGCCCCGCTATGGGCTTTGATTAGTGGTCTCTTTGTCAAATTAGTGCAGTCTCTATGTAAAATTAG
TGCGGTCTCTTCAGTGTCAGCAAGCTGTAGCGTA-GGTTCGACGATGGAGTGTTTGTGCTTGCGGCTGTGCCACCATTTG
TC--------------------------------TGGTCCACTAT------------------------------GTAAT
CCATGAGCACTTGGATCTAATTAGGAATGGATGTTGTTTGCCAAGTTACGTTTTGTCAATATTTTTCTCTTTTCAAAATA
TCAAATGACCCCGAGTTGTCACTTCGCCACACCTGCCTCTATTATTGAGGCGGGCTCCTGTCCATGCCAACTGCTTGCAT
TCACGTGGCGTGCCGCCAGTACATATCCTGTGCT-CC-ATGCTCCAAACTTTCAAAAAAAA-------------------
----TCTGATTTTTGTTGGGAATGTTCAAAGGACATGTATCCATAATCACTAAAAAAATTTCAGATCCCAAATCGAAATA
CACATGTATAGACCAAAAGCTATT--------------------------------------------------------
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>chr3D_1
CATCCGCGGCAACCTACGTGCATCGGCTCGAGCTTTTGTACTCACTCATGGCATGGCCTAAAATTTTGGCTCTTTCATTA
TGTTCATTTTTTCTTTATGGGGAGTTATGTATCACTTAGTGCGAGACGTAAGTCCGTCTCTTCTCTGGCGCTGGCTACGC
GGTCGCTTTAGTAGGCCGGCTCATTACGACGGTTTTGGGAAGGTTCTTTATACTAGTTTTAGAACCTTCCATGCA-TTTT
TTCTCAGTTTCTCCATTGGTTTTTATTACATTTTCTTAGTTTCA-TTTTTTCAAATACATGTCAATGTTTAAAAATACAG
GTTGTACATTTTCCATATACATGCACAATATTTTTTTATACACGTTGATTTT-TTTAAATACATGGTGCACTTTTGGTTT
TC-AAATAAATGTTAAGAAGTTTTAAATGCACATTGAACACTTTTTTGTATGGTGCGAGAGA-TTTTTTAAATGTCATGA
ACATATATCTATAATGGATGAAC-TTTTTTAGATGTTGCGTTCAATTTTTTTTTGCATGGCATAAATCATTGTTTTAAGC
TTACTGAACAA--TTTTTTGCATTGTAGAAACATTTTTCTCGAAATGTGCAAATATTTTATTATATGTCACTGACATTTT
TCTGAATGTTTTGAATCATTTTTAGAAAAACTATACGAACTTTGTGTAATGCAGCAGTATTTCTCGTGGAACATAACACT
GGGGCTGAGGTCTGCGAATCATTTAATGAGCCAGCCCGTGACAGATTGAGGTGCCCAAATTATCTGACGAAATCACTAAT
TGAGGAATGCTTGTTGCAAAGATCACTCCAATTCCCCTGATTGCGACAAATGGCGCACATGCAGCGCACCACTTGTCGCA
ACTTGGGAGTTTTCCCTTTTTTTCGTAGATCCATTTATTCAAAACGTTTTATCTTTCAAACTATGCGTTCAAATCTCGAA
CCGCTTTCACCGTTGGATTCCTCGTCTTCAAAACTAGATTTTTTAAATGTCATGAACATATATCTATAATGGATGAACTT
TTTTTAGATGTTGCGTTCAATTTTTTTTAATGGCATAAATCATTGTTTTAAGCTTACTGAACAATTTTTTGCATTGTAGA
AACATTTTTCTCGAAATGTGCAAATATTTTATTATATGTCACTGACATTTTTCTGAATGTTTTGAATCATTTTTAGAAAA
ATTATACGAACTTTGTGTAATGCAGCAGTATTTCTCGTGGAACATAACACTGGGGCTGAGGTCTGCGAATCATTTAATGA
GCC-------------AGCCCGTGACAGATTGAGGTGCCCAAATTATCTGACGAAATCACTAATTGAGGAATACTTTTTG
CAAAGATCACTCCAATTCCCCTGATTGTGACAAGTAGGCAGCCCATTTGCATGCAGCGCACCACTTGTCGCAACTTTGGC
AGTTTTCCTTTTTTTCGTAGATCCGTTTATTCAAAACGTTTTATCTTTCAAACTATGTGTTCAAATCTCGAACCGCTTTC
ACCATTGTATTCCTCGCGTTGAGATCTTCAAAATTAGATCCCATGTTGATATGTTTTGACGAACTATTTTTGACGAAAAA
ACCGAACCGGGCGCACGGGTTTTTTCCCTTTCGAAAGAGGCACGCCCGTGCCTCTCACGAAATCACAACCGTGCCTCTCG
CGGAAGCAAAACCGTGACTCTCGCGGAAGAAAAAAAAAACGCGTTTTTTCCGTTTCCGAGGAGGCACGGCCGTGACTCTC
GTGAAAGCACAACAATGCCTCTTGCGGAAGCAAAACCGTGACTCTCGCGAAAAGAAAAAAAAACAAAAAACGCGTTTTTC
CCTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCGTGAA
AAAAAACAGAAAACATGTGTTTTTTTCCTTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACACCCGTGCCTCTCGC
GGAAGCAAAACCGTGACTCTCGTGAAAGAGAAAAACAGAAAACGTGTTTTTTCCTTTCCAAGAGGCACGGTTGTGACTCT
CGCGAAAGCAAAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCGCGAAAGGAAAAAAATTAAAACACGTTTTTTCA
CGCAAAATTTTTTTTTTCCAATTTTTTTAATTGAAAAGCTAAGGAAGACCGGTGAAAAACCAAAGCATCGAAAAAAACTC
GGAAAAAACCGTTTAAAAAGCCGAAAACGCGTGCGGAAAATTAAAAAAAAAATCAGAGGGAGCGCCAGAGCGCGACACGT
GGCGAATGGCTGAGAGCACGCTAAGTGACGCTGATCGTTACGAGGCTCCCGAAAGAGCACTCGTTAACTAGTTGCTCTCA
CCATCTGAGCCTTTTGG---------CACAACGGCCATTCTGGGCCGCATTGCAAGGGATCTGGGCCGTTGCACTAA---
------------------------------TTGCGGGTAGCTGCCCGTCCCCATCTTCCCCCAAGGCTTCCTCTACAAGA
TTCCCCCACCCCTTCTTGCTAAATCCTATTTGACGCCTTATGCGCCCGCTATAGTACAACTCGCAATCGGGCGCATACCC
CCACCTCTCCGCTGGGCCGGCCCATCTAGATTTTTTCCTCTGTTTTTCAAATCGCGAAAAAACATATGGTAGTGCTTTGA
TTCGAACCCGAGACCTCCTGCTTAACAATAAGCTGCATAACCACCCAGCCACCCCCAACTGGACGTGCTACTTTAATGTT
TCTACGCCTTTTACTTTGTTCTTTTTTTCTTCTGCTTTCCTTTTTCTGGTTTTCTCTTTCGTTTTTTCTTTTTTGTTTTT
CTTCTCCCTGGGTTTGATGAACTTTTTCTGAAATTCGTGAACTTCTTCTTAACATCGATCAACTTTTGTCAAATGCGTTG
AACTTTTTTCAAATTTGATGAACTTTTTTCCAAATTGGATGAACTATTTTTCAAATTTGATTAACTTTTTTCAAAACCGA
TGATCTTTTTTCAAATTATATGAACTTTTTCAAAATTTGATGAACTTTTTTAAAACTGATGAACTTTTTTCAAAATTAGG
TGAACTTTTTCTAAATTTCGCGAACTTTTTCCAAATTTTGTTGAACTTTTTTTCCTAAATTCATGAACCTTATATCAAAA
TCGGTTAACTTTTTTTTAATTCGTGAACTTTTTTAAAGTTTGATGAACTTTTTTAAAAAAATTCGAAAAAAAATCTCGAA
AGTCAATGGTCAATGGCTCACCGGTCTACCATGAAACGTTCGAGCGTTTTTTCGTTTTTTTTTCTTTTGAGTAAACGAAA
CAAACGAGCGGGATAGGTGGGGAAGCAGGCGTCGTACGAGCTCGTCGGCTCGTTCATGGGCCGGCCCACTTTGCCAGGCG
CGTGGGCGCTGGTTTCCTCTTGCGGCGCATAAGGCGCTAGCGAGGAGCACTCCCCC---CTTCTTCCCCATTTCCACTTC
CACACACCACTTCCCAAATCCAGAGCCACCCTACCCAGCGATTCCACCGACGGCGATGTCCACATCCGGTTCGTCCTCCG
TTTCTGCCGACCGGGACAGCCTCCCCCCGATCCCCTGCACGGACTGCGGGGGCCACATCACCACCATTGCCTCCCGCGGC
GGCTCTCGTCCCGGGACCCAGATCTACAAGAAACTCCGCCGCAGCGTACGTGTTCTT-GCCCATTCCCCTCCATTATTAG
TCGTCCTCCTGCATTTCGCAGCGTCACAGCTTAGTCTGTTCCCCCGTTTCGCAGGCTGTTCTTGGCTGGTTCTTCCGCTG
GTCAGACGGGTACGCGCTGGCCGATGTTGCAAGGATGACCCTCCTCCTCGGCGTGACCAATCTGCTCGTCAACCTGCTTG
TTCTGGCTCTCGTGCTGCGGCTGTTCGCAAAGCGGAATGCATCTATGGCGTAATCTAATCTAGATGCTGGTGGATGGCCG
GCCGTAGTATCAGTAGTAGTAGGTCTTGTTGTCACGGCGCCCTCTTTAAAATTAGCGTGGTAGTAGTCCCGCCGTGTTAA
ATTAGTGTGGCTGTAG-CCCGCTATGGGCTTTGATTAGTGCAGTCCCTCTCTGTGTC----------------AAATTAG
TGCGGTCTCTTCAGTGTCAGCAAGCTGTAGCTTTTGGGTTGACGATGGAGTGTTTGTGCTTGCGGCTGTGCCACCATTTG
TCTGGTCTGGTCTGGTCAGCACGCTTGCAAATTATGGTCCACTAT------------------------------GTAAT
CCATTAGCACTTGTATCTAATT---AATGGATGTTGTTTGCCAAGTTACA-TTTGTCAGTATTTTACTGTTTTCCAAATA
TCAAATGAGCACGACTTGTCACTTCGCCACACCTGCCTCTATTATTGAAGTGGGCTCCTGCCCATGCCAACTGCTTGCAT
TCATGTGGCGTGCCGCCAGTACAGATCCTGTGCT-CCCATGCTCCAAACTTTCCAAAAACTAATTTCGAAATTAAAAAGG
AAA--CTGATTTTTGTTGGGAATGTTCAAAGGACATGCGTCCATAATAAAT--AAAAATTTCAGATCCCAAATCGAAATA
CACATGTATAAACCAAAAGCTAT---------------------------------------------------------
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>SNPs
----------S------------S-----------------------S--------S-----S---S-------------
----------------S-----------S-----------------S-------S---------S---------------
-----------S----------------------------S----------S------------SS--------SS----
------------S--------------S------S-SSS--S-SS---S----------------SSSS----S------
-S---------------------------S---------S--S-----------------------------------S-
-S--------------------S-----S------S-----S------------------------------S-------
----------------S---S--S-----S-------------------SS-----------------------------
--------S----------------------SS--------S----S---------------------S-----S-S---
--------S-S-----S------SS--S--S-SSSSS--SS---------------------------------------
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---------------------------------------------------------S----------SSSSSSSS--SS
SSSSSSSSSSSSSSSS----------------------------------------------------------------
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-------S--S------------------------------S-------------------S---------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------------------------------------------
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---------------------------------------SS----------S-S--------------------------
----S-------------------------------------------------S-------------------------
----S----S--S-----------------S-S-----------------------------------------------
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-------------------------S-----------------------------------------------S------
----------S------------S--------------------------------------------------------
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---------------------------------S----------------------------------------------
----------------------------------S----S--S----------S-SS-----------------------
---------------------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
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----------------------------------------------------S--------------------S------
----------------------------------S--------------------------------S-SS--SSSSSSS
---S----------------------------------------------------------------------------
------------------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_63
-------------------------------------------ACTCGTGTCATGGGCCAAAT-----------------
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>reverse_4675
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----------------------------------TGGAAATGTCGCCTCCTCTG--------------------------
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