Multiple sequence alignment - TraesCS3B01G079300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G079300 chr3B 100.000 2473 0 0 1 2473 50230093 50232565 0.000000e+00 4567.0
1 TraesCS3B01G079300 chr3B 85.470 117 11 3 1054 1170 50532861 50532971 1.550000e-22 117.0
2 TraesCS3B01G079300 chr3B 91.139 79 7 0 1827 1905 820398655 820398577 9.350000e-20 108.0
3 TraesCS3B01G079300 chr3B 96.078 51 2 0 1979 2029 796850147 796850097 1.580000e-12 84.2
4 TraesCS3B01G079300 chr3B 94.118 51 3 0 1979 2029 1596358 1596408 7.330000e-11 78.7
5 TraesCS3B01G079300 chr3D 90.395 1468 82 17 329 1763 29382191 29383632 0.000000e+00 1875.0
6 TraesCS3B01G079300 chr3D 89.426 331 29 4 2028 2352 29383708 29384038 1.770000e-111 412.0
7 TraesCS3B01G079300 chr3D 94.595 185 9 1 121 304 29382020 29382204 4.030000e-73 285.0
8 TraesCS3B01G079300 chr3D 83.942 137 12 6 1043 1178 29620287 29620414 3.340000e-24 122.0
9 TraesCS3B01G079300 chr3D 83.562 73 6 3 1073 1145 29615500 29615566 2.050000e-06 63.9
10 TraesCS3B01G079300 chr3A 89.583 576 43 9 989 1562 40152298 40152858 0.000000e+00 715.0
11 TraesCS3B01G079300 chr3A 83.784 111 15 2 1798 1905 19276532 19276642 4.350000e-18 102.0
12 TraesCS3B01G079300 chr3A 86.111 72 9 1 1753 1823 734738899 734738970 2.640000e-10 76.8
13 TraesCS3B01G079300 chr2B 97.321 112 3 0 2356 2467 628926032 628926143 9.030000e-45 191.0
14 TraesCS3B01G079300 chr2B 94.872 117 6 0 2357 2473 418285717 418285601 1.510000e-42 183.0
15 TraesCS3B01G079300 chr2B 83.654 104 13 3 1797 1896 699070064 699069961 7.280000e-16 95.3
16 TraesCS3B01G079300 chr6B 94.915 118 6 0 2356 2473 566301727 566301844 4.200000e-43 185.0
17 TraesCS3B01G079300 chr7B 94.068 118 7 0 2356 2473 122720973 122720856 1.950000e-41 180.0
18 TraesCS3B01G079300 chr7B 96.078 51 2 0 1979 2029 728507221 728507271 1.580000e-12 84.2
19 TraesCS3B01G079300 chr7B 77.206 136 22 7 1705 1834 610478215 610478083 1.230000e-08 71.3
20 TraesCS3B01G079300 chr4A 94.068 118 7 0 2356 2473 723521621 723521738 1.950000e-41 180.0
21 TraesCS3B01G079300 chr4A 93.220 118 8 0 2356 2473 645034747 645034630 9.090000e-40 174.0
22 TraesCS3B01G079300 chr4A 93.151 73 5 0 1824 1896 119089764 119089836 9.350000e-20 108.0
23 TraesCS3B01G079300 chr2D 94.068 118 7 0 2356 2473 629538852 629538735 1.950000e-41 180.0
24 TraesCS3B01G079300 chrUn 93.220 118 8 0 2356 2473 108231149 108231032 9.090000e-40 174.0
25 TraesCS3B01G079300 chr5B 93.220 118 8 0 2356 2473 684071438 684071321 9.090000e-40 174.0
26 TraesCS3B01G079300 chr5B 85.577 104 10 5 1797 1896 287789942 287789840 1.210000e-18 104.0
27 TraesCS3B01G079300 chr1B 93.151 73 5 0 1824 1896 644280153 644280225 9.350000e-20 108.0
28 TraesCS3B01G079300 chr5D 89.024 82 9 0 1824 1905 9491119 9491200 4.350000e-18 102.0
29 TraesCS3B01G079300 chr7D 86.170 94 8 5 1807 1896 77821589 77821497 2.020000e-16 97.1
30 TraesCS3B01G079300 chr1A 92.537 67 5 0 1829 1895 9115180 9115114 2.020000e-16 97.1
31 TraesCS3B01G079300 chr1D 96.078 51 2 0 1979 2029 448649557 448649507 1.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G079300 chr3B 50230093 50232565 2472 False 4567.000000 4567 100.000 1 2473 1 chr3B.!!$F2 2472
1 TraesCS3B01G079300 chr3D 29382020 29384038 2018 False 857.333333 1875 91.472 121 2352 3 chr3D.!!$F3 2231
2 TraesCS3B01G079300 chr3A 40152298 40152858 560 False 715.000000 715 89.583 989 1562 1 chr3A.!!$F2 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 344 0.038166 GAAGACCCTCATGCAACCCA 59.962 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 2365 0.042188 CGAAGTGTTCAACGTGGCAG 60.042 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.628882 ACTCAAAAGAAACTGAAATAAAACCG 57.371 30.769 0.00 0.00 0.00 4.44
72 73 8.248253 ACTCAAAAGAAACTGAAATAAAACCGT 58.752 29.630 0.00 0.00 0.00 4.83
73 74 8.989653 TCAAAAGAAACTGAAATAAAACCGTT 57.010 26.923 0.00 0.00 0.00 4.44
74 75 8.865001 TCAAAAGAAACTGAAATAAAACCGTTG 58.135 29.630 0.00 0.00 0.00 4.10
75 76 6.822073 AAGAAACTGAAATAAAACCGTTGC 57.178 33.333 0.00 0.00 0.00 4.17
76 77 5.897050 AGAAACTGAAATAAAACCGTTGCA 58.103 33.333 0.00 0.00 0.00 4.08
77 78 6.334202 AGAAACTGAAATAAAACCGTTGCAA 58.666 32.000 0.00 0.00 0.00 4.08
78 79 6.814146 AGAAACTGAAATAAAACCGTTGCAAA 59.186 30.769 0.00 0.00 0.00 3.68
79 80 5.959652 ACTGAAATAAAACCGTTGCAAAC 57.040 34.783 0.00 0.00 45.31 2.93
80 81 4.806775 ACTGAAATAAAACCGTTGCAAACC 59.193 37.500 0.00 0.00 46.28 3.27
81 82 4.755411 TGAAATAAAACCGTTGCAAACCA 58.245 34.783 0.00 0.00 46.28 3.67
82 83 4.806247 TGAAATAAAACCGTTGCAAACCAG 59.194 37.500 0.00 0.00 46.28 4.00
83 84 2.211353 TAAAACCGTTGCAAACCAGC 57.789 45.000 0.00 0.00 46.28 4.85
84 85 0.247736 AAAACCGTTGCAAACCAGCA 59.752 45.000 0.00 0.00 46.28 4.41
92 93 2.307934 TGCAAACCAGCAAAAGAACC 57.692 45.000 0.00 0.00 42.46 3.62
93 94 1.552337 TGCAAACCAGCAAAAGAACCA 59.448 42.857 0.00 0.00 42.46 3.67
94 95 2.027745 TGCAAACCAGCAAAAGAACCAA 60.028 40.909 0.00 0.00 42.46 3.67
95 96 2.609002 GCAAACCAGCAAAAGAACCAAG 59.391 45.455 0.00 0.00 0.00 3.61
96 97 3.678529 GCAAACCAGCAAAAGAACCAAGA 60.679 43.478 0.00 0.00 0.00 3.02
97 98 4.114794 CAAACCAGCAAAAGAACCAAGAG 58.885 43.478 0.00 0.00 0.00 2.85
98 99 3.297134 ACCAGCAAAAGAACCAAGAGA 57.703 42.857 0.00 0.00 0.00 3.10
99 100 3.631250 ACCAGCAAAAGAACCAAGAGAA 58.369 40.909 0.00 0.00 0.00 2.87
100 101 4.023291 ACCAGCAAAAGAACCAAGAGAAA 58.977 39.130 0.00 0.00 0.00 2.52
101 102 4.466015 ACCAGCAAAAGAACCAAGAGAAAA 59.534 37.500 0.00 0.00 0.00 2.29
102 103 5.046663 ACCAGCAAAAGAACCAAGAGAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
131 132 9.974980 TCCAAAGAAAACCAATAAAGATAACAC 57.025 29.630 0.00 0.00 0.00 3.32
183 185 5.240183 GGTTCTAAAACAGGTTTGTACCCTC 59.760 44.000 0.00 0.00 37.31 4.30
240 242 2.112522 CTACTTAGACGAGCATGCACG 58.887 52.381 31.45 31.45 36.19 5.34
260 262 1.502231 GAGCACAAGAAGCAAGACGA 58.498 50.000 0.00 0.00 0.00 4.20
262 264 1.069204 AGCACAAGAAGCAAGACGAGA 59.931 47.619 0.00 0.00 0.00 4.04
266 268 4.434857 GCACAAGAAGCAAGACGAGAATAC 60.435 45.833 0.00 0.00 0.00 1.89
304 306 1.796017 TATATCCCTCGTGCAACCCA 58.204 50.000 0.00 0.00 0.00 4.51
305 307 1.140312 ATATCCCTCGTGCAACCCAT 58.860 50.000 0.00 0.00 0.00 4.00
306 308 0.916086 TATCCCTCGTGCAACCCATT 59.084 50.000 0.00 0.00 0.00 3.16
307 309 0.039618 ATCCCTCGTGCAACCCATTT 59.960 50.000 0.00 0.00 0.00 2.32
308 310 0.178975 TCCCTCGTGCAACCCATTTT 60.179 50.000 0.00 0.00 0.00 1.82
309 311 0.678950 CCCTCGTGCAACCCATTTTT 59.321 50.000 0.00 0.00 0.00 1.94
310 312 1.336795 CCCTCGTGCAACCCATTTTTC 60.337 52.381 0.00 0.00 0.00 2.29
311 313 1.613437 CCTCGTGCAACCCATTTTTCT 59.387 47.619 0.00 0.00 0.00 2.52
312 314 2.817258 CCTCGTGCAACCCATTTTTCTA 59.183 45.455 0.00 0.00 0.00 2.10
313 315 3.254657 CCTCGTGCAACCCATTTTTCTAA 59.745 43.478 0.00 0.00 0.00 2.10
314 316 4.261825 CCTCGTGCAACCCATTTTTCTAAA 60.262 41.667 0.00 0.00 0.00 1.85
315 317 5.263968 TCGTGCAACCCATTTTTCTAAAA 57.736 34.783 0.00 0.00 0.00 1.52
316 318 5.661458 TCGTGCAACCCATTTTTCTAAAAA 58.339 33.333 3.29 3.29 41.59 1.94
339 341 3.965888 AGGAAGACCCTCATGCAAC 57.034 52.632 0.00 0.00 43.31 4.17
340 342 0.329596 AGGAAGACCCTCATGCAACC 59.670 55.000 0.00 0.00 43.31 3.77
341 343 0.681243 GGAAGACCCTCATGCAACCC 60.681 60.000 0.00 0.00 0.00 4.11
342 344 0.038166 GAAGACCCTCATGCAACCCA 59.962 55.000 0.00 0.00 0.00 4.51
351 353 3.675995 ATGCAACCCATGAAGCAGA 57.324 47.368 0.00 0.00 40.71 4.26
360 362 3.915073 ACCCATGAAGCAGATGAGGATAT 59.085 43.478 0.00 0.00 0.00 1.63
398 400 0.620556 TGGGCTCAATTCTCCACTCC 59.379 55.000 0.00 0.00 0.00 3.85
490 492 7.264373 ACACTTCGAGTTGAATCAAATTTCT 57.736 32.000 0.00 0.00 35.63 2.52
492 494 7.134815 CACTTCGAGTTGAATCAAATTTCTGT 58.865 34.615 0.00 0.00 35.63 3.41
542 544 8.446273 CAACTACTAAGTTCTTCCATGAACATG 58.554 37.037 7.70 7.70 44.28 3.21
552 554 2.684374 TCCATGAACATGCATGCAGTAC 59.316 45.455 26.69 16.47 43.30 2.73
619 648 8.966868 TCTTAAGTGGAATCAATCATTTAACCC 58.033 33.333 1.63 0.00 0.00 4.11
655 684 4.613437 AGTATCCCTTGCAAATGATTGGT 58.387 39.130 13.72 0.26 37.02 3.67
658 687 3.509442 TCCCTTGCAAATGATTGGTTCT 58.491 40.909 0.00 0.00 37.02 3.01
700 729 0.534203 TTGGGAGAACAACACTCGCC 60.534 55.000 0.00 0.00 43.46 5.54
772 801 1.532505 CCATTCGGCTCATGCTTTTCG 60.533 52.381 0.00 0.00 39.59 3.46
896 925 3.408755 CGCCACGCTTGCATATGA 58.591 55.556 6.97 0.00 0.00 2.15
897 926 1.944035 CGCCACGCTTGCATATGAT 59.056 52.632 6.97 0.00 0.00 2.45
898 927 1.147473 CGCCACGCTTGCATATGATA 58.853 50.000 6.97 0.00 0.00 2.15
899 928 1.530720 CGCCACGCTTGCATATGATAA 59.469 47.619 6.97 0.00 0.00 1.75
900 929 2.160219 CGCCACGCTTGCATATGATAAT 59.840 45.455 6.97 0.00 0.00 1.28
974 1005 1.413445 ACACGGCGGCCTATATAAACA 59.587 47.619 18.34 0.00 0.00 2.83
997 1028 4.698304 ACTCAACGAAACACAAAGGAAGAA 59.302 37.500 0.00 0.00 0.00 2.52
1001 1032 5.485662 ACGAAACACAAAGGAAGAAGAAG 57.514 39.130 0.00 0.00 0.00 2.85
1042 1073 3.245346 CTAGCTAGCCCCCTGCCC 61.245 72.222 12.13 0.00 42.71 5.36
1047 1078 4.499116 TAGCCCCCTGCCCCTCTC 62.499 72.222 0.00 0.00 42.71 3.20
1089 1120 3.179443 TGCTGAAGAAGAACACGAACT 57.821 42.857 0.00 0.00 0.00 3.01
1104 1135 1.364626 GAACTCCCTGATGTGCTGCG 61.365 60.000 0.00 0.00 0.00 5.18
1153 1184 2.203788 TGCCACCCTCCTCGTCTT 60.204 61.111 0.00 0.00 0.00 3.01
1168 1199 1.227350 TCTTCTCATGCGATGCCCG 60.227 57.895 0.00 0.00 42.21 6.13
1382 1413 2.035442 GGAGCCTTCTGCAACGACC 61.035 63.158 0.00 0.00 44.83 4.79
1419 1450 0.736325 CCCGTTAGTTGAGCTCCGTG 60.736 60.000 12.15 0.00 0.00 4.94
1508 1539 3.423154 GAACGTTGGCCAGGCTCG 61.423 66.667 12.43 15.82 0.00 5.03
1521 1552 1.338020 CAGGCTCGGCAAGAAGTTTTT 59.662 47.619 0.00 0.00 0.00 1.94
1562 1593 5.820423 GGCTTTGGGTAAATTGTTTGTCTTT 59.180 36.000 0.00 0.00 0.00 2.52
1573 1604 4.556942 TGTTTGTCTTTGACTGCTCATG 57.443 40.909 0.00 0.00 33.15 3.07
1580 1611 0.770499 TTGACTGCTCATGGTGGGAA 59.230 50.000 0.00 0.00 0.00 3.97
1584 1615 2.945668 GACTGCTCATGGTGGGAATAAC 59.054 50.000 0.00 0.00 0.00 1.89
1587 1618 4.019174 CTGCTCATGGTGGGAATAACTTT 58.981 43.478 0.00 0.00 0.00 2.66
1588 1619 4.415596 TGCTCATGGTGGGAATAACTTTT 58.584 39.130 0.00 0.00 0.00 2.27
1590 1621 4.747810 CTCATGGTGGGAATAACTTTTGC 58.252 43.478 0.00 0.00 0.00 3.68
1596 1627 5.777732 TGGTGGGAATAACTTTTGCAGTAAT 59.222 36.000 0.00 0.00 32.94 1.89
1756 1790 4.503741 AAAGTGTTGTATGGCATCACAC 57.496 40.909 21.33 21.33 45.49 3.82
1767 1804 9.791801 TTGTATGGCATCACACATATATTACTT 57.208 29.630 1.65 0.00 29.63 2.24
1769 1806 7.928307 ATGGCATCACACATATATTACTTCC 57.072 36.000 0.00 0.00 0.00 3.46
1770 1807 6.237901 TGGCATCACACATATATTACTTCCC 58.762 40.000 0.00 0.00 0.00 3.97
1771 1808 6.183361 TGGCATCACACATATATTACTTCCCA 60.183 38.462 0.00 0.00 0.00 4.37
1772 1809 6.886459 GGCATCACACATATATTACTTCCCAT 59.114 38.462 0.00 0.00 0.00 4.00
1773 1810 7.394359 GGCATCACACATATATTACTTCCCATT 59.606 37.037 0.00 0.00 0.00 3.16
1774 1811 9.448438 GCATCACACATATATTACTTCCCATTA 57.552 33.333 0.00 0.00 0.00 1.90
1790 1827 9.756571 ACTTCCCATTATAGAGGTAGTACATAG 57.243 37.037 2.06 0.00 0.00 2.23
1791 1828 9.976776 CTTCCCATTATAGAGGTAGTACATAGA 57.023 37.037 2.06 0.00 0.00 1.98
1792 1829 9.750783 TTCCCATTATAGAGGTAGTACATAGAC 57.249 37.037 2.06 0.00 0.00 2.59
1793 1830 9.125255 TCCCATTATAGAGGTAGTACATAGACT 57.875 37.037 2.06 0.00 0.00 3.24
1827 1864 7.166691 TGTATGTTACTAGTCCAAGTCTTCC 57.833 40.000 0.00 0.00 0.00 3.46
1828 1865 5.678955 ATGTTACTAGTCCAAGTCTTCCC 57.321 43.478 0.00 0.00 0.00 3.97
1829 1866 4.485875 TGTTACTAGTCCAAGTCTTCCCA 58.514 43.478 0.00 0.00 0.00 4.37
1830 1867 4.282703 TGTTACTAGTCCAAGTCTTCCCAC 59.717 45.833 0.00 0.00 0.00 4.61
1831 1868 3.261818 ACTAGTCCAAGTCTTCCCACT 57.738 47.619 0.00 0.00 0.00 4.00
1832 1869 4.399483 ACTAGTCCAAGTCTTCCCACTA 57.601 45.455 0.00 0.00 0.00 2.74
1833 1870 4.949121 ACTAGTCCAAGTCTTCCCACTAT 58.051 43.478 0.00 0.00 0.00 2.12
1834 1871 6.088541 ACTAGTCCAAGTCTTCCCACTATA 57.911 41.667 0.00 0.00 0.00 1.31
1835 1872 6.130569 ACTAGTCCAAGTCTTCCCACTATAG 58.869 44.000 0.00 0.00 0.00 1.31
1836 1873 5.208294 AGTCCAAGTCTTCCCACTATAGA 57.792 43.478 6.78 0.00 0.00 1.98
1837 1874 5.205056 AGTCCAAGTCTTCCCACTATAGAG 58.795 45.833 6.78 0.00 0.00 2.43
1838 1875 4.342665 GTCCAAGTCTTCCCACTATAGAGG 59.657 50.000 6.78 8.10 0.00 3.69
1839 1876 4.016479 TCCAAGTCTTCCCACTATAGAGGT 60.016 45.833 14.29 0.00 0.00 3.85
1840 1877 5.195146 TCCAAGTCTTCCCACTATAGAGGTA 59.805 44.000 14.29 0.00 0.00 3.08
1841 1878 5.536916 CCAAGTCTTCCCACTATAGAGGTAG 59.463 48.000 14.29 12.64 0.00 3.18
1842 1879 5.998128 AGTCTTCCCACTATAGAGGTAGT 57.002 43.478 14.29 0.00 35.34 2.73
1843 1880 7.288560 CAAGTCTTCCCACTATAGAGGTAGTA 58.711 42.308 14.29 3.25 33.29 1.82
1844 1881 7.463054 AGTCTTCCCACTATAGAGGTAGTAA 57.537 40.000 14.29 3.76 33.29 2.24
1845 1882 8.059565 AGTCTTCCCACTATAGAGGTAGTAAT 57.940 38.462 14.29 3.48 33.29 1.89
1846 1883 9.180282 AGTCTTCCCACTATAGAGGTAGTAATA 57.820 37.037 14.29 0.00 33.29 0.98
1847 1884 9.978336 GTCTTCCCACTATAGAGGTAGTAATAT 57.022 37.037 14.29 0.00 33.29 1.28
1890 1927 8.808240 ATATTACTAGTCCAAATTACTCCCCA 57.192 34.615 0.00 0.00 0.00 4.96
1891 1928 4.838904 ACTAGTCCAAATTACTCCCCAC 57.161 45.455 0.00 0.00 0.00 4.61
1892 1929 4.436079 ACTAGTCCAAATTACTCCCCACT 58.564 43.478 0.00 0.00 0.00 4.00
1893 1930 5.596763 ACTAGTCCAAATTACTCCCCACTA 58.403 41.667 0.00 0.00 0.00 2.74
1969 2006 3.264193 ACCAATCCAGCACTAATGTCTCA 59.736 43.478 0.00 0.00 0.00 3.27
1971 2008 4.514441 CCAATCCAGCACTAATGTCTCATC 59.486 45.833 0.00 0.00 0.00 2.92
1972 2009 3.443099 TCCAGCACTAATGTCTCATCG 57.557 47.619 0.00 0.00 0.00 3.84
1974 2011 3.119291 CCAGCACTAATGTCTCATCGTC 58.881 50.000 0.00 0.00 0.00 4.20
1975 2012 2.786027 CAGCACTAATGTCTCATCGTCG 59.214 50.000 0.00 0.00 0.00 5.12
1976 2013 2.423892 AGCACTAATGTCTCATCGTCGT 59.576 45.455 0.00 0.00 0.00 4.34
1977 2014 2.531912 GCACTAATGTCTCATCGTCGTG 59.468 50.000 0.00 0.00 0.00 4.35
1978 2015 3.730963 GCACTAATGTCTCATCGTCGTGA 60.731 47.826 0.00 0.00 0.00 4.35
1979 2016 3.786576 CACTAATGTCTCATCGTCGTGAC 59.213 47.826 0.00 0.00 0.00 3.67
1980 2017 2.279582 AATGTCTCATCGTCGTGACC 57.720 50.000 0.00 0.00 0.00 4.02
1981 2018 0.098905 ATGTCTCATCGTCGTGACCG 59.901 55.000 0.00 0.00 0.00 4.79
1982 2019 1.868251 GTCTCATCGTCGTGACCGC 60.868 63.158 0.00 0.00 0.00 5.68
1983 2020 2.038837 TCTCATCGTCGTGACCGCT 61.039 57.895 0.00 0.00 0.00 5.52
1984 2021 1.154016 CTCATCGTCGTGACCGCTT 60.154 57.895 0.00 0.00 0.00 4.68
1985 2022 1.406219 CTCATCGTCGTGACCGCTTG 61.406 60.000 0.00 0.00 0.00 4.01
1986 2023 2.126071 ATCGTCGTGACCGCTTGG 60.126 61.111 0.00 0.00 39.35 3.61
1987 2024 2.632544 ATCGTCGTGACCGCTTGGA 61.633 57.895 0.00 0.00 36.26 3.53
1988 2025 2.149803 ATCGTCGTGACCGCTTGGAA 62.150 55.000 0.00 0.00 36.26 3.53
1989 2026 1.736645 CGTCGTGACCGCTTGGAAT 60.737 57.895 0.00 0.00 36.26 3.01
1990 2027 0.457166 CGTCGTGACCGCTTGGAATA 60.457 55.000 0.00 0.00 36.26 1.75
1991 2028 1.717194 GTCGTGACCGCTTGGAATAA 58.283 50.000 0.00 0.00 36.26 1.40
1992 2029 1.659098 GTCGTGACCGCTTGGAATAAG 59.341 52.381 0.00 0.00 36.26 1.73
1993 2030 1.274167 TCGTGACCGCTTGGAATAAGT 59.726 47.619 0.00 0.00 36.26 2.24
1994 2031 1.393539 CGTGACCGCTTGGAATAAGTG 59.606 52.381 0.00 0.00 36.26 3.16
2000 2037 2.354821 CCGCTTGGAATAAGTGGTTAGC 59.645 50.000 10.32 0.00 41.69 3.09
2001 2038 3.270877 CGCTTGGAATAAGTGGTTAGCT 58.729 45.455 0.00 0.00 0.00 3.32
2002 2039 4.439057 CGCTTGGAATAAGTGGTTAGCTA 58.561 43.478 0.00 0.00 0.00 3.32
2003 2040 5.057149 CGCTTGGAATAAGTGGTTAGCTAT 58.943 41.667 0.00 0.00 0.00 2.97
2004 2041 5.177696 CGCTTGGAATAAGTGGTTAGCTATC 59.822 44.000 0.00 0.00 0.00 2.08
2005 2042 6.292150 GCTTGGAATAAGTGGTTAGCTATCT 58.708 40.000 0.00 0.00 0.00 1.98
2006 2043 6.768381 GCTTGGAATAAGTGGTTAGCTATCTT 59.232 38.462 0.00 0.74 0.00 2.40
2007 2044 7.931948 GCTTGGAATAAGTGGTTAGCTATCTTA 59.068 37.037 0.00 2.93 0.00 2.10
2008 2045 9.832445 CTTGGAATAAGTGGTTAGCTATCTTAA 57.168 33.333 0.00 0.00 0.00 1.85
2017 2054 9.515226 AGTGGTTAGCTATCTTAAAAACAATCA 57.485 29.630 0.00 0.00 0.00 2.57
2018 2055 9.774742 GTGGTTAGCTATCTTAAAAACAATCAG 57.225 33.333 0.00 0.00 0.00 2.90
2019 2056 8.458843 TGGTTAGCTATCTTAAAAACAATCAGC 58.541 33.333 0.00 0.00 0.00 4.26
2020 2057 8.458843 GGTTAGCTATCTTAAAAACAATCAGCA 58.541 33.333 0.00 0.00 0.00 4.41
2021 2058 9.840427 GTTAGCTATCTTAAAAACAATCAGCAA 57.160 29.630 0.00 0.00 0.00 3.91
2022 2059 9.840427 TTAGCTATCTTAAAAACAATCAGCAAC 57.160 29.630 0.00 0.00 0.00 4.17
2023 2060 8.115490 AGCTATCTTAAAAACAATCAGCAACT 57.885 30.769 0.00 0.00 0.00 3.16
2024 2061 8.239998 AGCTATCTTAAAAACAATCAGCAACTC 58.760 33.333 0.00 0.00 0.00 3.01
2025 2062 8.023128 GCTATCTTAAAAACAATCAGCAACTCA 58.977 33.333 0.00 0.00 0.00 3.41
2026 2063 9.897744 CTATCTTAAAAACAATCAGCAACTCAA 57.102 29.630 0.00 0.00 0.00 3.02
2028 2065 8.994429 TCTTAAAAACAATCAGCAACTCAAAA 57.006 26.923 0.00 0.00 0.00 2.44
2029 2066 9.598517 TCTTAAAAACAATCAGCAACTCAAAAT 57.401 25.926 0.00 0.00 0.00 1.82
2030 2067 9.640974 CTTAAAAACAATCAGCAACTCAAAATG 57.359 29.630 0.00 0.00 0.00 2.32
2031 2068 7.614124 AAAAACAATCAGCAACTCAAAATGT 57.386 28.000 0.00 0.00 0.00 2.71
2032 2069 6.833342 AAACAATCAGCAACTCAAAATGTC 57.167 33.333 0.00 0.00 0.00 3.06
2033 2070 5.779529 ACAATCAGCAACTCAAAATGTCT 57.220 34.783 0.00 0.00 0.00 3.41
2034 2071 5.766222 ACAATCAGCAACTCAAAATGTCTC 58.234 37.500 0.00 0.00 0.00 3.36
2035 2072 4.675190 ATCAGCAACTCAAAATGTCTCG 57.325 40.909 0.00 0.00 0.00 4.04
2036 2073 3.466836 TCAGCAACTCAAAATGTCTCGT 58.533 40.909 0.00 0.00 0.00 4.18
2037 2074 3.248363 TCAGCAACTCAAAATGTCTCGTG 59.752 43.478 0.00 0.00 0.00 4.35
2038 2075 2.549754 AGCAACTCAAAATGTCTCGTGG 59.450 45.455 0.00 0.00 0.00 4.94
2039 2076 2.290641 GCAACTCAAAATGTCTCGTGGT 59.709 45.455 0.00 0.00 0.00 4.16
2043 2080 2.800544 CTCAAAATGTCTCGTGGTCGTT 59.199 45.455 0.00 0.00 38.33 3.85
2054 2091 1.070786 TGGTCGTTGGGCACTTCTC 59.929 57.895 0.00 0.00 0.00 2.87
2055 2092 2.027625 GGTCGTTGGGCACTTCTCG 61.028 63.158 0.00 0.00 0.00 4.04
2062 2100 2.182030 GGCACTTCTCGACTCCCG 59.818 66.667 0.00 0.00 40.25 5.14
2082 2123 3.310860 CTAGACGGCCCACACCACC 62.311 68.421 0.00 0.00 0.00 4.61
2133 2174 8.627208 AAGTACTTTGGAATCCTGCATATATG 57.373 34.615 8.45 8.45 0.00 1.78
2151 2192 2.354109 TGTGCGCTTTGTGTGAAAAA 57.646 40.000 9.73 0.00 0.00 1.94
2152 2193 2.257894 TGTGCGCTTTGTGTGAAAAAG 58.742 42.857 9.73 0.00 37.63 2.27
2211 2253 2.375014 AACCCCTGACCGTCAAAATT 57.625 45.000 2.19 0.00 0.00 1.82
2213 2255 2.786777 ACCCCTGACCGTCAAAATTAC 58.213 47.619 2.19 0.00 0.00 1.89
2263 2305 7.404671 AATCAAATAAATCACGCCCTAAAGT 57.595 32.000 0.00 0.00 0.00 2.66
2266 2308 2.579410 AAATCACGCCCTAAAGTGGT 57.421 45.000 0.00 0.00 38.77 4.16
2286 2328 0.820074 TACCCACGGTGGTTTTGCTG 60.820 55.000 24.70 10.65 39.91 4.41
2292 2334 0.664166 CGGTGGTTTTGCTGATGTGC 60.664 55.000 0.00 0.00 0.00 4.57
2295 2337 1.080569 GGTTTTGCTGATGTGCCGG 60.081 57.895 0.00 0.00 0.00 6.13
2297 2339 3.266230 TTTTGCTGATGTGCCGGCG 62.266 57.895 23.90 7.24 41.19 6.46
2302 2344 4.819761 TGATGTGCCGGCGAGCTC 62.820 66.667 23.90 15.87 0.00 4.09
2304 2346 4.827087 ATGTGCCGGCGAGCTCAG 62.827 66.667 23.90 7.85 39.39 3.35
2322 2364 3.414269 TCAGACATGAAAGAGCATTGCA 58.586 40.909 11.91 0.00 30.61 4.08
2323 2365 3.189910 TCAGACATGAAAGAGCATTGCAC 59.810 43.478 11.91 4.48 30.61 4.57
2341 2383 1.014352 ACTGCCACGTTGAACACTTC 58.986 50.000 0.00 0.00 0.00 3.01
2353 2395 3.049674 CACTTCGTGTGCGCCCAT 61.050 61.111 4.18 0.00 40.06 4.00
2354 2396 3.049674 ACTTCGTGTGCGCCCATG 61.050 61.111 4.18 5.02 38.14 3.66
2355 2397 3.803082 CTTCGTGTGCGCCCATGG 61.803 66.667 12.26 4.14 38.14 3.66
2356 2398 4.634703 TTCGTGTGCGCCCATGGT 62.635 61.111 12.26 0.00 38.14 3.55
2375 2417 1.607148 GTCGACCAAAAGACCAAAGGG 59.393 52.381 3.51 0.00 41.29 3.95
2376 2418 0.958822 CGACCAAAAGACCAAAGGGG 59.041 55.000 0.00 0.00 44.81 4.79
2385 2427 4.872293 CCAAAGGGGTCTTGGCAT 57.128 55.556 0.00 0.00 32.75 4.40
2386 2428 3.071671 CCAAAGGGGTCTTGGCATT 57.928 52.632 0.00 0.00 32.75 3.56
2387 2429 0.609662 CCAAAGGGGTCTTGGCATTG 59.390 55.000 0.00 0.00 32.75 2.82
2388 2430 1.631405 CAAAGGGGTCTTGGCATTGA 58.369 50.000 0.00 0.00 32.75 2.57
2389 2431 1.969923 CAAAGGGGTCTTGGCATTGAA 59.030 47.619 0.00 0.00 32.75 2.69
2390 2432 2.368221 CAAAGGGGTCTTGGCATTGAAA 59.632 45.455 0.00 0.00 32.75 2.69
2391 2433 2.397044 AGGGGTCTTGGCATTGAAAA 57.603 45.000 0.00 0.00 0.00 2.29
2392 2434 2.906568 AGGGGTCTTGGCATTGAAAAT 58.093 42.857 0.00 0.00 0.00 1.82
2393 2435 2.833943 AGGGGTCTTGGCATTGAAAATC 59.166 45.455 0.00 0.00 0.00 2.17
2394 2436 2.833943 GGGGTCTTGGCATTGAAAATCT 59.166 45.455 0.00 0.00 0.00 2.40
2395 2437 3.261643 GGGGTCTTGGCATTGAAAATCTT 59.738 43.478 0.00 0.00 0.00 2.40
2396 2438 4.248058 GGGTCTTGGCATTGAAAATCTTG 58.752 43.478 0.00 0.00 0.00 3.02
2397 2439 4.021192 GGGTCTTGGCATTGAAAATCTTGA 60.021 41.667 0.00 0.00 0.00 3.02
2398 2440 5.511202 GGGTCTTGGCATTGAAAATCTTGAA 60.511 40.000 0.00 0.00 0.00 2.69
2399 2441 5.636543 GGTCTTGGCATTGAAAATCTTGAAG 59.363 40.000 0.00 0.00 0.00 3.02
2400 2442 6.218746 GTCTTGGCATTGAAAATCTTGAAGT 58.781 36.000 0.00 0.00 0.00 3.01
2401 2443 7.370383 GTCTTGGCATTGAAAATCTTGAAGTA 58.630 34.615 0.00 0.00 0.00 2.24
2402 2444 7.867403 GTCTTGGCATTGAAAATCTTGAAGTAA 59.133 33.333 0.00 0.00 0.00 2.24
2403 2445 8.420222 TCTTGGCATTGAAAATCTTGAAGTAAA 58.580 29.630 0.00 0.00 0.00 2.01
2404 2446 8.592105 TTGGCATTGAAAATCTTGAAGTAAAG 57.408 30.769 0.00 0.00 0.00 1.85
2405 2447 7.950512 TGGCATTGAAAATCTTGAAGTAAAGA 58.049 30.769 0.00 0.00 40.36 2.52
2406 2448 8.420222 TGGCATTGAAAATCTTGAAGTAAAGAA 58.580 29.630 0.00 0.00 39.54 2.52
2407 2449 8.703336 GGCATTGAAAATCTTGAAGTAAAGAAC 58.297 33.333 0.00 0.00 39.54 3.01
2408 2450 9.248291 GCATTGAAAATCTTGAAGTAAAGAACA 57.752 29.630 0.00 0.00 39.54 3.18
2418 2460 9.396022 TCTTGAAGTAAAGAACAAATGTCTTCT 57.604 29.630 10.08 0.00 33.25 2.85
2419 2461 9.657121 CTTGAAGTAAAGAACAAATGTCTTCTC 57.343 33.333 10.08 0.00 33.57 2.87
2420 2462 8.731275 TGAAGTAAAGAACAAATGTCTTCTCA 57.269 30.769 10.08 5.01 33.57 3.27
2421 2463 8.830580 TGAAGTAAAGAACAAATGTCTTCTCAG 58.169 33.333 10.08 0.00 33.57 3.35
2422 2464 7.195839 AGTAAAGAACAAATGTCTTCTCAGC 57.804 36.000 0.00 0.00 0.00 4.26
2423 2465 6.767902 AGTAAAGAACAAATGTCTTCTCAGCA 59.232 34.615 0.00 0.00 0.00 4.41
2424 2466 6.455360 AAAGAACAAATGTCTTCTCAGCAA 57.545 33.333 0.00 0.00 0.00 3.91
2425 2467 5.686159 AGAACAAATGTCTTCTCAGCAAG 57.314 39.130 0.00 0.00 0.00 4.01
2426 2468 5.128919 AGAACAAATGTCTTCTCAGCAAGT 58.871 37.500 0.00 0.00 0.00 3.16
2427 2469 4.825546 ACAAATGTCTTCTCAGCAAGTG 57.174 40.909 0.00 0.00 0.00 3.16
2428 2470 3.567164 ACAAATGTCTTCTCAGCAAGTGG 59.433 43.478 0.00 0.00 0.00 4.00
2429 2471 1.818642 ATGTCTTCTCAGCAAGTGGC 58.181 50.000 0.00 0.00 45.30 5.01
2444 2486 6.292389 GCAAGTGGCTGTATAAGTTATCAG 57.708 41.667 0.00 8.02 40.25 2.90
2445 2487 5.817816 GCAAGTGGCTGTATAAGTTATCAGT 59.182 40.000 16.76 4.54 40.25 3.41
2446 2488 6.316390 GCAAGTGGCTGTATAAGTTATCAGTT 59.684 38.462 16.76 8.79 40.25 3.16
2447 2489 7.677276 GCAAGTGGCTGTATAAGTTATCAGTTG 60.677 40.741 17.07 17.07 40.25 3.16
2448 2490 7.182817 AGTGGCTGTATAAGTTATCAGTTGA 57.817 36.000 16.76 0.00 0.00 3.18
2449 2491 7.268586 AGTGGCTGTATAAGTTATCAGTTGAG 58.731 38.462 16.76 3.17 0.00 3.02
2450 2492 7.124298 AGTGGCTGTATAAGTTATCAGTTGAGA 59.876 37.037 16.76 0.00 0.00 3.27
2451 2493 7.222999 GTGGCTGTATAAGTTATCAGTTGAGAC 59.777 40.741 16.76 3.88 0.00 3.36
2452 2494 7.124298 TGGCTGTATAAGTTATCAGTTGAGACT 59.876 37.037 16.76 0.00 36.25 3.24
2463 2505 3.018598 AGTTGAGACTGATGTCACGTG 57.981 47.619 9.94 9.94 45.20 4.49
2464 2506 2.061773 GTTGAGACTGATGTCACGTGG 58.938 52.381 17.00 0.08 45.20 4.94
2465 2507 0.603065 TGAGACTGATGTCACGTGGG 59.397 55.000 17.00 2.24 45.20 4.61
2466 2508 0.737715 GAGACTGATGTCACGTGGGC 60.738 60.000 17.00 9.81 45.20 5.36
2467 2509 1.188219 AGACTGATGTCACGTGGGCT 61.188 55.000 17.00 2.26 45.20 5.19
2468 2510 0.737715 GACTGATGTCACGTGGGCTC 60.738 60.000 17.00 10.13 42.48 4.70
2469 2511 1.293179 CTGATGTCACGTGGGCTCA 59.707 57.895 17.00 14.01 0.00 4.26
2470 2512 0.738762 CTGATGTCACGTGGGCTCAG 60.739 60.000 17.00 18.94 0.00 3.35
2471 2513 1.184970 TGATGTCACGTGGGCTCAGA 61.185 55.000 17.00 0.00 0.00 3.27
2472 2514 0.176680 GATGTCACGTGGGCTCAGAT 59.823 55.000 17.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.083080 CGGTTTTATTTCAGTTTCTTTTGAGTT 57.917 29.630 0.00 0.00 0.00 3.01
46 47 8.248253 ACGGTTTTATTTCAGTTTCTTTTGAGT 58.752 29.630 0.00 0.00 0.00 3.41
47 48 8.628882 ACGGTTTTATTTCAGTTTCTTTTGAG 57.371 30.769 0.00 0.00 0.00 3.02
48 49 8.865001 CAACGGTTTTATTTCAGTTTCTTTTGA 58.135 29.630 0.00 0.00 0.00 2.69
49 50 7.634432 GCAACGGTTTTATTTCAGTTTCTTTTG 59.366 33.333 0.00 0.00 0.00 2.44
50 51 7.332182 TGCAACGGTTTTATTTCAGTTTCTTTT 59.668 29.630 0.00 0.00 0.00 2.27
51 52 6.814146 TGCAACGGTTTTATTTCAGTTTCTTT 59.186 30.769 0.00 0.00 0.00 2.52
52 53 6.334202 TGCAACGGTTTTATTTCAGTTTCTT 58.666 32.000 0.00 0.00 0.00 2.52
53 54 5.897050 TGCAACGGTTTTATTTCAGTTTCT 58.103 33.333 0.00 0.00 0.00 2.52
54 55 6.576551 TTGCAACGGTTTTATTTCAGTTTC 57.423 33.333 0.00 0.00 0.00 2.78
55 56 6.183360 GGTTTGCAACGGTTTTATTTCAGTTT 60.183 34.615 0.00 0.00 0.00 2.66
56 57 5.292345 GGTTTGCAACGGTTTTATTTCAGTT 59.708 36.000 0.00 0.00 0.00 3.16
57 58 4.806775 GGTTTGCAACGGTTTTATTTCAGT 59.193 37.500 0.00 0.00 0.00 3.41
58 59 4.806247 TGGTTTGCAACGGTTTTATTTCAG 59.194 37.500 0.00 0.00 0.00 3.02
59 60 4.755411 TGGTTTGCAACGGTTTTATTTCA 58.245 34.783 0.00 0.00 0.00 2.69
60 61 4.318475 GCTGGTTTGCAACGGTTTTATTTC 60.318 41.667 0.00 0.00 0.00 2.17
61 62 3.558006 GCTGGTTTGCAACGGTTTTATTT 59.442 39.130 0.00 0.00 0.00 1.40
62 63 3.127589 GCTGGTTTGCAACGGTTTTATT 58.872 40.909 0.00 0.00 0.00 1.40
63 64 2.101582 TGCTGGTTTGCAACGGTTTTAT 59.898 40.909 0.00 0.00 40.29 1.40
64 65 1.476891 TGCTGGTTTGCAACGGTTTTA 59.523 42.857 0.00 0.00 40.29 1.52
65 66 0.247736 TGCTGGTTTGCAACGGTTTT 59.752 45.000 0.00 0.00 40.29 2.43
66 67 0.247736 TTGCTGGTTTGCAACGGTTT 59.752 45.000 0.00 0.00 46.43 3.27
67 68 1.893786 TTGCTGGTTTGCAACGGTT 59.106 47.368 0.00 0.00 46.43 4.44
68 69 3.609703 TTGCTGGTTTGCAACGGT 58.390 50.000 0.00 0.00 46.43 4.83
73 74 1.552337 TGGTTCTTTTGCTGGTTTGCA 59.448 42.857 0.00 0.00 41.65 4.08
74 75 2.307934 TGGTTCTTTTGCTGGTTTGC 57.692 45.000 0.00 0.00 0.00 3.68
75 76 4.114794 CTCTTGGTTCTTTTGCTGGTTTG 58.885 43.478 0.00 0.00 0.00 2.93
76 77 4.023291 TCTCTTGGTTCTTTTGCTGGTTT 58.977 39.130 0.00 0.00 0.00 3.27
77 78 3.631250 TCTCTTGGTTCTTTTGCTGGTT 58.369 40.909 0.00 0.00 0.00 3.67
78 79 3.297134 TCTCTTGGTTCTTTTGCTGGT 57.703 42.857 0.00 0.00 0.00 4.00
79 80 4.654091 TTTCTCTTGGTTCTTTTGCTGG 57.346 40.909 0.00 0.00 0.00 4.85
99 100 9.952030 TCTTTATTGGTTTTCTTTGGACTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
104 105 9.974980 TGTTATCTTTATTGGTTTTCTTTGGAC 57.025 29.630 0.00 0.00 0.00 4.02
105 106 9.974980 GTGTTATCTTTATTGGTTTTCTTTGGA 57.025 29.630 0.00 0.00 0.00 3.53
106 107 9.757227 TGTGTTATCTTTATTGGTTTTCTTTGG 57.243 29.630 0.00 0.00 0.00 3.28
153 155 5.359860 ACAAACCTGTTTTAGAACCTTCCAG 59.640 40.000 0.00 0.00 34.80 3.86
183 185 2.558359 CACTTTTGGGAAGGCTTACAGG 59.442 50.000 12.40 5.87 0.00 4.00
240 242 0.514691 CGTCTTGCTTCTTGTGCTCC 59.485 55.000 0.00 0.00 0.00 4.70
260 262 6.967135 TCTCGTTTACTGCGATATGTATTCT 58.033 36.000 0.00 0.00 37.74 2.40
266 268 7.591795 GGGATATATCTCGTTTACTGCGATATG 59.408 40.741 12.42 0.00 37.74 1.78
322 324 0.681243 GGGTTGCATGAGGGTCTTCC 60.681 60.000 0.00 0.00 0.00 3.46
323 325 0.038166 TGGGTTGCATGAGGGTCTTC 59.962 55.000 0.00 0.00 0.00 2.87
324 326 0.706433 ATGGGTTGCATGAGGGTCTT 59.294 50.000 0.00 0.00 0.00 3.01
325 327 0.033796 CATGGGTTGCATGAGGGTCT 60.034 55.000 0.00 0.00 32.09 3.85
326 328 0.034186 TCATGGGTTGCATGAGGGTC 60.034 55.000 0.00 0.00 34.50 4.46
327 329 0.409092 TTCATGGGTTGCATGAGGGT 59.591 50.000 0.00 0.00 39.80 4.34
328 330 1.108776 CTTCATGGGTTGCATGAGGG 58.891 55.000 0.00 0.00 39.80 4.30
329 331 0.458669 GCTTCATGGGTTGCATGAGG 59.541 55.000 0.00 0.00 39.80 3.86
330 332 1.134367 CTGCTTCATGGGTTGCATGAG 59.866 52.381 0.00 0.00 39.80 2.90
331 333 1.179152 CTGCTTCATGGGTTGCATGA 58.821 50.000 0.00 0.00 37.29 3.07
332 334 1.179152 TCTGCTTCATGGGTTGCATG 58.821 50.000 0.00 0.00 34.79 4.06
333 335 1.754803 CATCTGCTTCATGGGTTGCAT 59.245 47.619 0.00 0.00 34.79 3.96
334 336 1.179152 CATCTGCTTCATGGGTTGCA 58.821 50.000 0.00 0.00 0.00 4.08
335 337 1.404391 CTCATCTGCTTCATGGGTTGC 59.596 52.381 0.00 0.00 0.00 4.17
336 338 2.022195 CCTCATCTGCTTCATGGGTTG 58.978 52.381 0.00 0.00 0.00 3.77
337 339 1.918262 TCCTCATCTGCTTCATGGGTT 59.082 47.619 0.00 0.00 0.00 4.11
338 340 1.588239 TCCTCATCTGCTTCATGGGT 58.412 50.000 0.00 0.00 0.00 4.51
339 341 2.953284 ATCCTCATCTGCTTCATGGG 57.047 50.000 0.00 0.00 0.00 4.00
340 342 4.695928 CACATATCCTCATCTGCTTCATGG 59.304 45.833 0.00 0.00 0.00 3.66
341 343 5.306394 ACACATATCCTCATCTGCTTCATG 58.694 41.667 0.00 0.00 0.00 3.07
342 344 5.563876 ACACATATCCTCATCTGCTTCAT 57.436 39.130 0.00 0.00 0.00 2.57
351 353 5.958321 TCACTCTCCTACACATATCCTCAT 58.042 41.667 0.00 0.00 0.00 2.90
360 362 2.492088 CCACGAATCACTCTCCTACACA 59.508 50.000 0.00 0.00 0.00 3.72
398 400 3.185188 CGGAGTATTCCTCGCATTTGATG 59.815 47.826 2.43 0.00 41.67 3.07
463 465 9.445786 GAAATTTGATTCAACTCGAAGTGTTTA 57.554 29.630 0.00 0.00 41.78 2.01
472 474 7.857389 TCTTTGACAGAAATTTGATTCAACTCG 59.143 33.333 0.00 0.00 0.00 4.18
522 524 5.885230 TGCATGTTCATGGAAGAACTTAG 57.115 39.130 13.55 0.59 46.19 2.18
542 544 3.077359 GGAATGGATAGGTACTGCATGC 58.923 50.000 11.82 11.82 41.52 4.06
552 554 0.764890 TTCTGCCGGGAATGGATAGG 59.235 55.000 2.18 0.00 0.00 2.57
584 613 9.994432 GATTGATTCCACTTAAGAAATACAGTG 57.006 33.333 10.09 0.00 37.07 3.66
619 648 9.337396 TGCAAGGGATACTACATTAAAAGTATG 57.663 33.333 11.23 0.00 38.67 2.39
655 684 5.010820 TCTGTATCGATCTCTCGTCCTAGAA 59.989 44.000 0.00 0.00 45.25 2.10
658 687 4.281435 ACTCTGTATCGATCTCTCGTCCTA 59.719 45.833 0.00 0.00 45.25 2.94
700 729 0.914417 TCTGCCCTCCCCTACCTTTG 60.914 60.000 0.00 0.00 0.00 2.77
772 801 6.316640 GGCTAGAACCAGAAAGAACTTATTCC 59.683 42.308 0.00 0.00 35.18 3.01
896 925 4.563580 GGATGTGTCCACCGCAGATATTAT 60.564 45.833 0.00 0.00 44.42 1.28
897 926 3.244078 GGATGTGTCCACCGCAGATATTA 60.244 47.826 0.00 0.00 44.42 0.98
898 927 2.485479 GGATGTGTCCACCGCAGATATT 60.485 50.000 0.00 0.00 44.42 1.28
899 928 1.070758 GGATGTGTCCACCGCAGATAT 59.929 52.381 0.00 0.00 44.42 1.63
900 929 0.464036 GGATGTGTCCACCGCAGATA 59.536 55.000 0.00 0.00 44.42 1.98
974 1005 4.258543 TCTTCCTTTGTGTTTCGTTGAGT 58.741 39.130 0.00 0.00 0.00 3.41
997 1028 1.557443 GCTTGCGTACGTGCACTTCT 61.557 55.000 17.90 0.00 46.25 2.85
1001 1032 2.262187 CTACGCTTGCGTACGTGCAC 62.262 60.000 21.61 6.82 46.25 4.57
1034 1065 4.748798 ACAGGAGAGGGGCAGGGG 62.749 72.222 0.00 0.00 0.00 4.79
1035 1066 3.406200 CACAGGAGAGGGGCAGGG 61.406 72.222 0.00 0.00 0.00 4.45
1042 1073 2.433838 CGTGCAGCACAGGAGAGG 60.434 66.667 25.19 3.13 36.20 3.69
1089 1120 4.783621 GCCGCAGCACATCAGGGA 62.784 66.667 0.00 0.00 39.53 4.20
1149 1180 1.493950 CGGGCATCGCATGAGAAGAC 61.494 60.000 2.39 0.10 0.00 3.01
1168 1199 5.665381 ATACGTACTACTAACCTCTTCGC 57.335 43.478 0.00 0.00 0.00 4.70
1360 1391 4.033776 TTGCAGAAGGCTCCGGGG 62.034 66.667 0.00 0.00 45.15 5.73
1419 1450 6.566753 GCTTATAGGCATCTTGAATCGTTTCC 60.567 42.308 1.27 0.00 0.00 3.13
1457 1488 7.340232 GCATCCCCAAATATATTTCTCAGCATA 59.660 37.037 7.76 0.00 0.00 3.14
1463 1494 8.181904 TGAAAGCATCCCCAAATATATTTCTC 57.818 34.615 7.76 0.00 0.00 2.87
1521 1552 5.465935 CAAAGCCGGCTTACAAAAGATTAA 58.534 37.500 40.29 0.00 34.84 1.40
1562 1593 0.994247 ATTCCCACCATGAGCAGTCA 59.006 50.000 0.00 0.00 37.02 3.41
1573 1604 5.715434 TTACTGCAAAAGTTATTCCCACC 57.285 39.130 0.00 0.00 40.56 4.61
1587 1618 7.977293 TGCGAGTTAGACTTTATATTACTGCAA 59.023 33.333 0.00 0.00 0.00 4.08
1588 1619 7.485810 TGCGAGTTAGACTTTATATTACTGCA 58.514 34.615 0.00 0.00 0.00 4.41
1703 1737 9.944376 TTAGCTTGTAGACTCATTTTGTCTTAT 57.056 29.630 0.00 0.00 41.45 1.73
1748 1782 7.928307 ATGGGAAGTAATATATGTGTGATGC 57.072 36.000 0.00 0.00 0.00 3.91
1767 1804 9.125255 AGTCTATGTACTACCTCTATAATGGGA 57.875 37.037 0.00 0.00 0.00 4.37
1801 1838 8.910944 GGAAGACTTGGACTAGTAACATACATA 58.089 37.037 0.00 0.00 0.00 2.29
1802 1839 7.147707 GGGAAGACTTGGACTAGTAACATACAT 60.148 40.741 0.00 0.00 0.00 2.29
1803 1840 6.154021 GGGAAGACTTGGACTAGTAACATACA 59.846 42.308 0.00 0.00 0.00 2.29
1804 1841 6.154021 TGGGAAGACTTGGACTAGTAACATAC 59.846 42.308 0.00 0.00 0.00 2.39
1805 1842 6.154021 GTGGGAAGACTTGGACTAGTAACATA 59.846 42.308 0.00 0.00 0.00 2.29
1806 1843 5.046520 GTGGGAAGACTTGGACTAGTAACAT 60.047 44.000 0.00 0.00 0.00 2.71
1807 1844 4.282703 GTGGGAAGACTTGGACTAGTAACA 59.717 45.833 0.00 0.00 0.00 2.41
1808 1845 4.527427 AGTGGGAAGACTTGGACTAGTAAC 59.473 45.833 0.00 0.00 0.00 2.50
1809 1846 4.748701 AGTGGGAAGACTTGGACTAGTAA 58.251 43.478 0.00 0.00 0.00 2.24
1810 1847 4.399483 AGTGGGAAGACTTGGACTAGTA 57.601 45.455 0.00 0.00 0.00 1.82
1811 1848 3.261818 AGTGGGAAGACTTGGACTAGT 57.738 47.619 0.00 0.00 0.00 2.57
1812 1849 6.366340 TCTATAGTGGGAAGACTTGGACTAG 58.634 44.000 0.00 0.00 0.00 2.57
1813 1850 6.337185 TCTATAGTGGGAAGACTTGGACTA 57.663 41.667 0.00 0.00 0.00 2.59
1814 1851 5.205056 CTCTATAGTGGGAAGACTTGGACT 58.795 45.833 0.00 0.00 0.00 3.85
1815 1852 4.342665 CCTCTATAGTGGGAAGACTTGGAC 59.657 50.000 12.29 0.00 0.00 4.02
1816 1853 4.016479 ACCTCTATAGTGGGAAGACTTGGA 60.016 45.833 21.82 0.00 33.22 3.53
1817 1854 4.290942 ACCTCTATAGTGGGAAGACTTGG 58.709 47.826 21.82 0.00 33.22 3.61
1818 1855 6.130569 ACTACCTCTATAGTGGGAAGACTTG 58.869 44.000 21.82 6.11 34.02 3.16
1819 1856 6.344232 ACTACCTCTATAGTGGGAAGACTT 57.656 41.667 21.82 4.84 34.02 3.01
1820 1857 5.998128 ACTACCTCTATAGTGGGAAGACT 57.002 43.478 21.82 5.46 34.02 3.24
1821 1858 9.978336 ATATTACTACCTCTATAGTGGGAAGAC 57.022 37.037 21.82 0.00 36.09 3.01
1864 1901 9.901651 TGGGGAGTAATTTGGACTAGTAATATA 57.098 33.333 0.00 0.00 0.00 0.86
1865 1902 8.657712 GTGGGGAGTAATTTGGACTAGTAATAT 58.342 37.037 0.00 0.00 0.00 1.28
1866 1903 7.847848 AGTGGGGAGTAATTTGGACTAGTAATA 59.152 37.037 0.00 0.00 0.00 0.98
1867 1904 6.677076 AGTGGGGAGTAATTTGGACTAGTAAT 59.323 38.462 0.00 0.00 0.00 1.89
1868 1905 6.027482 AGTGGGGAGTAATTTGGACTAGTAA 58.973 40.000 0.00 0.00 0.00 2.24
1869 1906 5.596763 AGTGGGGAGTAATTTGGACTAGTA 58.403 41.667 0.00 0.00 0.00 1.82
1870 1907 4.436079 AGTGGGGAGTAATTTGGACTAGT 58.564 43.478 0.00 0.00 0.00 2.57
1871 1908 6.464465 CCATAGTGGGGAGTAATTTGGACTAG 60.464 46.154 0.00 0.00 32.67 2.57
1872 1909 5.368523 CCATAGTGGGGAGTAATTTGGACTA 59.631 44.000 0.00 0.00 32.67 2.59
1873 1910 4.166144 CCATAGTGGGGAGTAATTTGGACT 59.834 45.833 0.00 0.00 32.67 3.85
1874 1911 4.461198 CCATAGTGGGGAGTAATTTGGAC 58.539 47.826 0.00 0.00 32.67 4.02
1875 1912 4.788925 CCATAGTGGGGAGTAATTTGGA 57.211 45.455 0.00 0.00 32.67 3.53
1937 1974 0.323629 CTGGATTGGTGTACCGGTGT 59.676 55.000 19.93 0.00 39.43 4.16
1940 1977 1.024579 GTGCTGGATTGGTGTACCGG 61.025 60.000 0.00 0.00 39.43 5.28
1951 1988 3.386078 ACGATGAGACATTAGTGCTGGAT 59.614 43.478 0.00 0.00 0.00 3.41
1969 2006 2.126071 CCAAGCGGTCACGACGAT 60.126 61.111 0.00 0.00 44.60 3.73
1971 2008 0.457166 TATTCCAAGCGGTCACGACG 60.457 55.000 0.00 0.00 44.60 5.12
1972 2009 1.659098 CTTATTCCAAGCGGTCACGAC 59.341 52.381 0.00 0.00 44.60 4.34
1974 2011 1.393539 CACTTATTCCAAGCGGTCACG 59.606 52.381 0.00 0.00 44.63 4.35
1975 2012 1.737793 CCACTTATTCCAAGCGGTCAC 59.262 52.381 0.00 0.00 0.00 3.67
1976 2013 1.349688 ACCACTTATTCCAAGCGGTCA 59.650 47.619 0.00 0.00 26.98 4.02
1977 2014 2.109425 ACCACTTATTCCAAGCGGTC 57.891 50.000 0.00 0.00 26.98 4.79
1978 2015 2.579410 AACCACTTATTCCAAGCGGT 57.421 45.000 0.00 0.00 34.41 5.68
1979 2016 2.354821 GCTAACCACTTATTCCAAGCGG 59.645 50.000 0.00 0.00 0.00 5.52
1980 2017 3.270877 AGCTAACCACTTATTCCAAGCG 58.729 45.455 0.00 0.00 34.01 4.68
1981 2018 6.292150 AGATAGCTAACCACTTATTCCAAGC 58.708 40.000 0.00 0.00 0.00 4.01
1982 2019 9.832445 TTAAGATAGCTAACCACTTATTCCAAG 57.168 33.333 0.00 0.00 0.00 3.61
1991 2028 9.515226 TGATTGTTTTTAAGATAGCTAACCACT 57.485 29.630 0.00 0.00 0.00 4.00
1992 2029 9.774742 CTGATTGTTTTTAAGATAGCTAACCAC 57.225 33.333 0.00 0.00 0.00 4.16
1993 2030 8.458843 GCTGATTGTTTTTAAGATAGCTAACCA 58.541 33.333 0.00 0.00 0.00 3.67
1994 2031 8.458843 TGCTGATTGTTTTTAAGATAGCTAACC 58.541 33.333 0.00 0.00 0.00 2.85
1995 2032 9.840427 TTGCTGATTGTTTTTAAGATAGCTAAC 57.160 29.630 0.00 0.00 0.00 2.34
1996 2033 9.840427 GTTGCTGATTGTTTTTAAGATAGCTAA 57.160 29.630 0.00 0.00 0.00 3.09
1997 2034 9.231297 AGTTGCTGATTGTTTTTAAGATAGCTA 57.769 29.630 0.00 0.00 0.00 3.32
1998 2035 8.115490 AGTTGCTGATTGTTTTTAAGATAGCT 57.885 30.769 0.00 0.00 0.00 3.32
1999 2036 8.023128 TGAGTTGCTGATTGTTTTTAAGATAGC 58.977 33.333 0.00 0.00 0.00 2.97
2000 2037 9.897744 TTGAGTTGCTGATTGTTTTTAAGATAG 57.102 29.630 0.00 0.00 0.00 2.08
2002 2039 9.598517 TTTTGAGTTGCTGATTGTTTTTAAGAT 57.401 25.926 0.00 0.00 0.00 2.40
2003 2040 8.994429 TTTTGAGTTGCTGATTGTTTTTAAGA 57.006 26.923 0.00 0.00 0.00 2.10
2004 2041 9.640974 CATTTTGAGTTGCTGATTGTTTTTAAG 57.359 29.630 0.00 0.00 0.00 1.85
2005 2042 9.160496 ACATTTTGAGTTGCTGATTGTTTTTAA 57.840 25.926 0.00 0.00 0.00 1.52
2006 2043 8.715191 ACATTTTGAGTTGCTGATTGTTTTTA 57.285 26.923 0.00 0.00 0.00 1.52
2007 2044 7.550196 AGACATTTTGAGTTGCTGATTGTTTTT 59.450 29.630 0.00 0.00 0.00 1.94
2008 2045 7.043565 AGACATTTTGAGTTGCTGATTGTTTT 58.956 30.769 0.00 0.00 0.00 2.43
2009 2046 6.576185 AGACATTTTGAGTTGCTGATTGTTT 58.424 32.000 0.00 0.00 0.00 2.83
2010 2047 6.152932 AGACATTTTGAGTTGCTGATTGTT 57.847 33.333 0.00 0.00 0.00 2.83
2011 2048 5.561532 CGAGACATTTTGAGTTGCTGATTGT 60.562 40.000 0.00 0.00 0.00 2.71
2012 2049 4.849926 CGAGACATTTTGAGTTGCTGATTG 59.150 41.667 0.00 0.00 0.00 2.67
2013 2050 4.516698 ACGAGACATTTTGAGTTGCTGATT 59.483 37.500 0.00 0.00 0.00 2.57
2014 2051 4.067896 ACGAGACATTTTGAGTTGCTGAT 58.932 39.130 0.00 0.00 0.00 2.90
2015 2052 3.248363 CACGAGACATTTTGAGTTGCTGA 59.752 43.478 0.00 0.00 0.00 4.26
2016 2053 3.548587 CACGAGACATTTTGAGTTGCTG 58.451 45.455 0.00 0.00 0.00 4.41
2017 2054 2.549754 CCACGAGACATTTTGAGTTGCT 59.450 45.455 0.00 0.00 0.00 3.91
2018 2055 2.290641 ACCACGAGACATTTTGAGTTGC 59.709 45.455 0.00 0.00 0.00 4.17
2019 2056 3.362986 CGACCACGAGACATTTTGAGTTG 60.363 47.826 0.00 0.00 42.66 3.16
2020 2057 2.800544 CGACCACGAGACATTTTGAGTT 59.199 45.455 0.00 0.00 42.66 3.01
2021 2058 2.223971 ACGACCACGAGACATTTTGAGT 60.224 45.455 0.00 0.00 42.66 3.41
2022 2059 2.404215 ACGACCACGAGACATTTTGAG 58.596 47.619 0.00 0.00 42.66 3.02
2023 2060 2.519377 ACGACCACGAGACATTTTGA 57.481 45.000 0.00 0.00 42.66 2.69
2024 2061 2.349438 CCAACGACCACGAGACATTTTG 60.349 50.000 0.00 0.00 42.66 2.44
2025 2062 1.871039 CCAACGACCACGAGACATTTT 59.129 47.619 0.00 0.00 42.66 1.82
2026 2063 1.508632 CCAACGACCACGAGACATTT 58.491 50.000 0.00 0.00 42.66 2.32
2027 2064 0.320421 CCCAACGACCACGAGACATT 60.320 55.000 0.00 0.00 42.66 2.71
2028 2065 1.292223 CCCAACGACCACGAGACAT 59.708 57.895 0.00 0.00 42.66 3.06
2029 2066 2.732016 CCCAACGACCACGAGACA 59.268 61.111 0.00 0.00 42.66 3.41
2030 2067 2.737376 GCCCAACGACCACGAGAC 60.737 66.667 0.00 0.00 42.66 3.36
2031 2068 3.228017 TGCCCAACGACCACGAGA 61.228 61.111 0.00 0.00 42.66 4.04
2032 2069 2.989055 AAGTGCCCAACGACCACGAG 62.989 60.000 0.00 0.00 42.66 4.18
2033 2070 2.981977 GAAGTGCCCAACGACCACGA 62.982 60.000 0.00 0.00 42.66 4.35
2034 2071 2.590575 AAGTGCCCAACGACCACG 60.591 61.111 0.00 0.00 45.75 4.94
2035 2072 1.227853 AGAAGTGCCCAACGACCAC 60.228 57.895 0.00 0.00 0.00 4.16
2036 2073 1.070786 GAGAAGTGCCCAACGACCA 59.929 57.895 0.00 0.00 0.00 4.02
2037 2074 2.027625 CGAGAAGTGCCCAACGACC 61.028 63.158 0.00 0.00 0.00 4.79
2038 2075 1.006571 TCGAGAAGTGCCCAACGAC 60.007 57.895 0.00 0.00 0.00 4.34
2039 2076 1.006571 GTCGAGAAGTGCCCAACGA 60.007 57.895 0.00 0.00 0.00 3.85
2043 2080 2.283529 GGGAGTCGAGAAGTGCCCA 61.284 63.158 0.00 0.00 32.72 5.36
2062 2100 2.280552 TGGTGTGGGCCGTCTAGAC 61.281 63.158 13.18 13.18 0.00 2.59
2082 2123 0.976641 TGCTCTGTGGTGTAGAAGGG 59.023 55.000 0.00 0.00 0.00 3.95
2108 2149 8.220559 ACATATATGCAGGATTCCAAAGTACTT 58.779 33.333 12.79 1.12 0.00 2.24
2133 2174 2.525055 TCTTTTTCACACAAAGCGCAC 58.475 42.857 11.47 0.00 32.17 5.34
2141 2182 7.858382 CGTGGTTATACATTTCTTTTTCACACA 59.142 33.333 0.00 0.00 0.00 3.72
2144 2185 9.881529 TTACGTGGTTATACATTTCTTTTTCAC 57.118 29.630 0.00 0.00 0.00 3.18
2178 2220 1.650314 GGGGTTATGTGGCCGAAACG 61.650 60.000 0.00 0.00 0.00 3.60
2266 2308 0.106619 AGCAAAACCACCGTGGGTAA 60.107 50.000 21.77 0.00 35.52 2.85
2286 2328 4.819761 TGAGCTCGCCGGCACATC 62.820 66.667 28.98 18.22 34.17 3.06
2292 2334 2.563050 TTCATGTCTGAGCTCGCCGG 62.563 60.000 9.64 0.00 31.68 6.13
2295 2337 1.925847 CTCTTTCATGTCTGAGCTCGC 59.074 52.381 9.64 2.47 31.68 5.03
2302 2344 3.190744 AGTGCAATGCTCTTTCATGTCTG 59.809 43.478 6.82 0.00 0.00 3.51
2304 2346 3.499048 CAGTGCAATGCTCTTTCATGTC 58.501 45.455 7.11 0.00 29.56 3.06
2322 2364 1.014352 GAAGTGTTCAACGTGGCAGT 58.986 50.000 0.00 0.00 0.00 4.40
2323 2365 0.042188 CGAAGTGTTCAACGTGGCAG 60.042 55.000 0.00 0.00 0.00 4.85
2355 2397 1.607148 CCCTTTGGTCTTTTGGTCGAC 59.393 52.381 7.13 7.13 0.00 4.20
2356 2398 1.477923 CCCCTTTGGTCTTTTGGTCGA 60.478 52.381 0.00 0.00 0.00 4.20
2357 2399 0.958822 CCCCTTTGGTCTTTTGGTCG 59.041 55.000 0.00 0.00 0.00 4.79
2368 2410 0.609662 CAATGCCAAGACCCCTTTGG 59.390 55.000 0.00 0.00 41.37 3.28
2369 2411 1.631405 TCAATGCCAAGACCCCTTTG 58.369 50.000 0.00 0.00 0.00 2.77
2370 2412 2.397044 TTCAATGCCAAGACCCCTTT 57.603 45.000 0.00 0.00 0.00 3.11
2371 2413 2.397044 TTTCAATGCCAAGACCCCTT 57.603 45.000 0.00 0.00 0.00 3.95
2372 2414 2.397044 TTTTCAATGCCAAGACCCCT 57.603 45.000 0.00 0.00 0.00 4.79
2373 2415 2.833943 AGATTTTCAATGCCAAGACCCC 59.166 45.455 0.00 0.00 0.00 4.95
2374 2416 4.021192 TCAAGATTTTCAATGCCAAGACCC 60.021 41.667 0.00 0.00 0.00 4.46
2375 2417 5.138125 TCAAGATTTTCAATGCCAAGACC 57.862 39.130 0.00 0.00 0.00 3.85
2376 2418 6.218746 ACTTCAAGATTTTCAATGCCAAGAC 58.781 36.000 0.00 0.00 0.00 3.01
2377 2419 6.409524 ACTTCAAGATTTTCAATGCCAAGA 57.590 33.333 0.00 0.00 0.00 3.02
2378 2420 8.592105 TTTACTTCAAGATTTTCAATGCCAAG 57.408 30.769 0.00 0.00 0.00 3.61
2379 2421 8.420222 TCTTTACTTCAAGATTTTCAATGCCAA 58.580 29.630 0.00 0.00 0.00 4.52
2380 2422 7.950512 TCTTTACTTCAAGATTTTCAATGCCA 58.049 30.769 0.00 0.00 0.00 4.92
2381 2423 8.703336 GTTCTTTACTTCAAGATTTTCAATGCC 58.297 33.333 0.00 0.00 32.69 4.40
2382 2424 9.248291 TGTTCTTTACTTCAAGATTTTCAATGC 57.752 29.630 0.00 0.00 32.69 3.56
2392 2434 9.396022 AGAAGACATTTGTTCTTTACTTCAAGA 57.604 29.630 0.00 0.00 36.15 3.02
2393 2435 9.657121 GAGAAGACATTTGTTCTTTACTTCAAG 57.343 33.333 0.00 0.00 36.15 3.02
2394 2436 9.173021 TGAGAAGACATTTGTTCTTTACTTCAA 57.827 29.630 0.00 0.00 36.15 2.69
2395 2437 8.731275 TGAGAAGACATTTGTTCTTTACTTCA 57.269 30.769 0.00 0.00 36.15 3.02
2396 2438 7.800847 GCTGAGAAGACATTTGTTCTTTACTTC 59.199 37.037 0.00 0.00 33.04 3.01
2397 2439 7.283127 TGCTGAGAAGACATTTGTTCTTTACTT 59.717 33.333 0.00 0.00 33.04 2.24
2398 2440 6.767902 TGCTGAGAAGACATTTGTTCTTTACT 59.232 34.615 0.00 0.00 33.04 2.24
2399 2441 6.959361 TGCTGAGAAGACATTTGTTCTTTAC 58.041 36.000 0.00 0.00 33.04 2.01
2400 2442 7.283127 ACTTGCTGAGAAGACATTTGTTCTTTA 59.717 33.333 0.00 0.00 33.04 1.85
2401 2443 6.096001 ACTTGCTGAGAAGACATTTGTTCTTT 59.904 34.615 0.00 0.00 33.04 2.52
2402 2444 5.591877 ACTTGCTGAGAAGACATTTGTTCTT 59.408 36.000 0.00 0.00 33.04 2.52
2403 2445 5.008415 CACTTGCTGAGAAGACATTTGTTCT 59.992 40.000 0.00 0.00 35.67 3.01
2404 2446 5.210715 CACTTGCTGAGAAGACATTTGTTC 58.789 41.667 0.00 0.00 0.00 3.18
2405 2447 4.037208 CCACTTGCTGAGAAGACATTTGTT 59.963 41.667 0.00 0.00 0.00 2.83
2406 2448 3.567164 CCACTTGCTGAGAAGACATTTGT 59.433 43.478 0.00 0.00 0.00 2.83
2407 2449 3.611057 GCCACTTGCTGAGAAGACATTTG 60.611 47.826 0.00 0.00 36.87 2.32
2408 2450 2.555757 GCCACTTGCTGAGAAGACATTT 59.444 45.455 0.00 0.00 36.87 2.32
2409 2451 2.157738 GCCACTTGCTGAGAAGACATT 58.842 47.619 0.00 0.00 36.87 2.71
2410 2452 1.818642 GCCACTTGCTGAGAAGACAT 58.181 50.000 0.00 0.00 36.87 3.06
2411 2453 3.312404 GCCACTTGCTGAGAAGACA 57.688 52.632 0.00 0.00 36.87 3.41
2421 2463 5.817816 ACTGATAACTTATACAGCCACTTGC 59.182 40.000 0.00 0.00 41.71 4.01
2422 2464 7.549134 TCAACTGATAACTTATACAGCCACTTG 59.451 37.037 0.00 0.00 34.25 3.16
2423 2465 7.620880 TCAACTGATAACTTATACAGCCACTT 58.379 34.615 0.00 0.00 34.25 3.16
2424 2466 7.124298 TCTCAACTGATAACTTATACAGCCACT 59.876 37.037 0.00 0.00 34.25 4.00
2425 2467 7.222999 GTCTCAACTGATAACTTATACAGCCAC 59.777 40.741 0.00 0.00 34.25 5.01
2426 2468 7.124298 AGTCTCAACTGATAACTTATACAGCCA 59.876 37.037 0.00 0.00 33.32 4.75
2427 2469 7.493367 AGTCTCAACTGATAACTTATACAGCC 58.507 38.462 0.00 0.00 33.32 4.85
2443 2485 2.288457 CCACGTGACATCAGTCTCAACT 60.288 50.000 19.30 0.00 45.20 3.16
2444 2486 2.061773 CCACGTGACATCAGTCTCAAC 58.938 52.381 19.30 0.00 45.20 3.18
2445 2487 1.000843 CCCACGTGACATCAGTCTCAA 59.999 52.381 19.30 0.00 45.20 3.02
2446 2488 0.603065 CCCACGTGACATCAGTCTCA 59.397 55.000 19.30 0.00 45.20 3.27
2447 2489 0.737715 GCCCACGTGACATCAGTCTC 60.738 60.000 19.30 0.00 45.20 3.36
2448 2490 1.188219 AGCCCACGTGACATCAGTCT 61.188 55.000 19.30 0.00 45.20 3.24
2449 2491 0.737715 GAGCCCACGTGACATCAGTC 60.738 60.000 19.30 0.00 45.19 3.51
2450 2492 1.293498 GAGCCCACGTGACATCAGT 59.707 57.895 19.30 0.00 0.00 3.41
2451 2493 0.738762 CTGAGCCCACGTGACATCAG 60.739 60.000 19.30 20.60 0.00 2.90
2452 2494 1.184970 TCTGAGCCCACGTGACATCA 61.185 55.000 19.30 15.61 0.00 3.07
2453 2495 0.176680 ATCTGAGCCCACGTGACATC 59.823 55.000 19.30 11.71 0.00 3.06
2454 2496 2.290847 ATCTGAGCCCACGTGACAT 58.709 52.632 19.30 0.93 0.00 3.06
2455 2497 3.791640 ATCTGAGCCCACGTGACA 58.208 55.556 19.30 10.42 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.