>input_sequence_79090
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----------------------------------------------------------------------AGTGCACGTA
CGCAAGCGTAGCTGACTAGCTAGCCCCCTGCCCCTCTCCTGTGCTGCACGCCATGGCGATGCTGAAGAAGAACACGAACT
CCCTGATGTGCTGCGGCTTCGCGGCCGCTCTCATGGTGGTCATGGCTGCCACCCTCCTCGTCTTCTCATGCGATGCCCGC
GAAGAGGTTAGTAGTACGTATTTGATTTGCACGGTCTCTCTGAGATCAGAAGATTTAGTACACAAATTGCTTTGCAGATG
GATGATCTTGCTGCTTCTTTTGTGCCGGCGTCGTGCTACTCCAACTACTTCCCACACTGCACCGACCACCGGTGCAAGAA
GTTCTGCGGCGGCGCCCGCGAGCCGCCGGTCCCCGGAGCCTTCTGCAACGACCGAAGCAACTGCTGCTGCCCCGTTAGTT
GAGCTCCGTGGAAACGATTCAAGATGCCTATAAGCATAAATAATTTTTATGCTGAGAAATATA-----------------
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>chr3B_1_TraesCS3B01G079300
TATGTACTTTGAAAAGTCAACAAAGTATTTAAGGAAAAAATTAAAAACTCAAAAGAAACTGAAATAAAACCGTTGCAAAC
CAGCAAAAGAACCAAGAGAAAAAAGTCCAAAGAAAACCAATAAAGATAACACAGAAAAACAAAAAACA-ACAACCTGGAA
GGTTCTAAAACAGGTTTGTACCCTCCTGTAAGCCTTCCCAAAAGTGCTCTAATGTGTTGGCCTACTTAGACGAGCATGCA
CGGAGCACAAGAAGCAAGACGAGAATACATATCGCAGTAAACGAGATATATCCCTCGTGCAACCCATTTTTCTAAAAAAA
GGAGGAAGACCCTCATGCAACCCATGAAGCAGATGAGGATATGTGTAGGAGAGTGATTCGTGGGCTCAATTCTCCACTCC
ATCAAATGCGAGGAATACTCCGTACTATAGCATATTTTGCGACTGAAACCCAAAAAAGGAAAAATAAACACTTCGAGTTG
AATCAAATTTCTGTCAAAGATATATGCTAAATAATTGCAACTACTAAGTTCTTCCATGAACATGCATGCAGTACC-----
----------------------TATCCATTCCCGGCAGAAAAAAGATAAATCCACTGTATTTCTTAAGTGGAATCAATCA
TTTAACCCATACTTTTAATGTAGTATCCCTTGCAAATGATTGGTTCTAGGACGAGAGATCGATACAGAGTTGGGAGAACA
ACACTCGCCAAAGGTAGGGGAGGGCAGAAAGCAAGAGGACACGGGGAATAAGTTCTTTGTCCATTCGGCTCATGCTTTTC
GGAATAAGTTCTTTCTGGTTCTAGCCCACACGTACACCACACTTTAACTAACGCACACGACTCTGGCGGCACACTTATTC
TCTTGCCCATGCGTGTCAACCTGGCGGCGCCACGCTTGCATATGATAATATCTGCGGTGGACACATCCGGCGGTGCCGTT
ACATATAATTGGCTAGGCAAACACACGGCGGCCTATATA--AACACTCAACGAAACACAAAGGAAGAAGAAGTGCACGTA
CGCAAGCGTAGCTGACTAGCTAGCCCCCTGCCCCTCTCCTGTGCTGCACGCCATGGCGATGCTGAAGAAGAACACGAACT
CCCTGATGTGCTGCGGCTTCGCGGCCGCTCTCATGGTGGTCATGGCTGCCACCCTCCTCGTCTTCTCATGCGATGCCCGC
GAAGAGGTTAGTAGTACGTATTTGATTTGCACGGTCTCTCTGAGATCAGAAGATTTAGTACACAAATTGCTTTGCAGATG
GATGATCTTGCTGCTTCTTTTGTGCCGGCGTCGTGCTACTCCAACTACTTCCCACACTGCACCGACCACCGGTGCAAGAA
GTTCTGCGGCGGCGCCCGCGAGCCGCCGGTCCCCGGAGCCTTCTGCAACGACCGAAGCAACTGCTGCTGCCCCGTTAGTT
GAGCTCCGTGGAAACGATTCAAGATGCCTATAAGCATAAATAATTTTTATGCTGAGAAATATATTTGGGGATGCTTTCAT
GGAACGTTGGCCAGGCTCGGCAAGAAGTTTTTTAATCTTTTGTAAGCCGGCTTTGGGTAAATTGTTTGTCTTTGACTGCT
CATGGTGGGAATAACTTTTGCAGTAAT--ATAAAGTCTAACTC-GCAAATTTGCTTATGAGACAATGATTTAATGATTAG
AGAGATAATTTGAGTAACATATCTAGTTATTCACATTATGAGTAACATCACATATAATAAGACAAAATGAGTCTACAAGC
TAATATATAAAGTGTTGTATGGCATCACAC---ATATATTACTTCCCATTATAGAGGTAGTACATAGACTAGTAAAATAT
GTATGTTACTAGTCCAAGTCTTCCCACTATAGAGGTAGTAATATAGACTAGTAACATATGTATATTACTAGTCCAAATTA
CTCCCCACTATGGGTAGTCTTCAAAAAAAATATGTGATTTATATTAATTAAGTACACCGGTACACCAATCCAGCACTAAT
GTCTCATCGTCGTGACCGCTTGGAATAAGTGGTTAGCTATCTTAAAAACAATCAGCAACTCAAAATGTCTCGTGGTCGTT
GGGCACTTCTCG-ACTCCCGTCTAG---ACGGCCCACACCACCCCTTCTACACCACAGAGCATCTTAAAAGTACTTTGGA
ATCCTGCATATATGTGCGCTTTGTGTGAAAAAG-AAATGTATAACCACGTAAAGTATCACGTTTCGGCCACATAACCCCT
GACCGTCAAAATTACAATCTTAATTATCTCAACTTTTAAAAATCAAATAAATCACGCCCTAAAGTGGTTACCCACGGTGG
TTTTGCTGATGTGCCGGCGAGCTCAGACATGAAAGAGCATTGCACTGCCACGTTGAACACTTCGTGTGCGCCCATGGTCG
ACCAAAAGACCAAAGGGGTCTTGGCATTGAAAATCTTGAAGTAAAGAACAAATGTCTTCTCAGCAAGTGGCTGTATAAGT
TATCAGTTGAGACTGATGTCACGTGGGCTCAGAT
>chr3D_121
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----------------------------------------TAAAGATAACAGAGAAAAACAAAAATAGCACAACATGGAA
GGTTCTAAAACAGGTTTGTACCCTTCTGTAAGCCTTCCCAAAAGTGCTCTAATGTGTTGGCCTACTTAGACGAGCATGCA
CCGAGCACAAGAAGCAAGACGGGGATAGATATCGCAGTAAACGAGATATATCCCTCGTGCAACCCG--------------
------------------------TGAAGCAGCTGAGGATACGTGTAGGAGAGTGATTCGTGGGCTCAATTCTCCACTCG
ATCAAATGCGAGGAATACTCCGTACTATAGCATATTTTGCGACTGAAAACCAAAAAAGGAAAAACAAACACTTAGAGTTG
AATCAAATTTCCGCCAAAGATATATGCTAAATAATTGCAACTAATAAGTTCTTCCATGAACATCCATGCAGTAGCTATCC
ACTTGCCCATGCACAAGATATATATCCATTCCCGGCAGAAAAACGATATATCAACTGTATTTCTTAAGTGGAATCAATCA
TTTAACCTATACTTTTAATGTAGTATCCCTTGCAAATGATTGGATCCAGGACGAGAGATCGATACAGAGTTGGGAGAACA
ACACTCGCTAAAGGTAGGGGAGGGCAGAAAGCAAGAGGACACGGGGAATAAGTTCTTTGTCCATTCGGCTCATGCTTTTC
CGAATAAGTTCTTTCTGGTTCTAGCCCACACGTACACCACACTTTAACTAACGCACACGACTCTGGCGGCACACTTATTC
TCTTGCCCATGCGTGTCAACCTGGCGGCGCCACGCTTGCATATGGC---ATCTGCGGTGGACACATCCGGCGGTGCCGTT
ACATATAATTGGCTAGGCAAACACACGGCGGCCTATATATAAACGCTCAACGAAACACAAAGG-----------------
---AAGCGTAGCTGACTAGCTAGCTTCCTGCC-CTCTTCTGTGCTGCACGCCATGGCGATGCTGAAGAAGAACACGAACG
CCCTGATGTGCTGCAGCTTCGGGGCCGCCCTCATGGTGGTCATGGCTACCACCCTCCTCAGCTCCTCATGCGATGCCCAC
AAAGAGGTTAGTAGTACGCATTTGATTTGCACGGTCTCTCTGAGATCAGAAGATTTAGTACACAAATTGTTTTGCAGATG
GGTGATCTTGCTGCTTCTTTTGTGCCGGCGTCGTGCTACTCCAACTACTTCCCACACTGCACCGACCACCGGTGCAAGAA
GTTCTGCGGCGGCGCCCGCGAGCCGCCTGTGCCCGGAGCCTTCTGCAACGACAGAAGCAACTGCTGCTGCCCTATTAGTT
GAGCTCCGCAGAAACGATTCAAGATGCCAATAAGCATAAATAATTTTGATGCTAAGAAATATATTTGTGGATGCTTTCAT
GGAACGTTGGCCTGGCTCAGCAAGACGTTTTCTAGTCTTTTGTAAGCCGGCTTTGGGTAAATTGTTTGTCTTCGACTGCT
CATAGTGGGAGTAATTTCAGGAGTAACACATAAGGTCAAACTCAGCAAATTTGCTTATGTGACAATGGTTTAATGAG--G
AGAGATGATTTGAGTAACATAGCTAGTTATACACACTACGAGTAACATCACACATACTAAGATAAGATGAGTCTACAAGT
TAATAAATGAAGTGTTGTATGACATCACATAGTATATATTACTCCG----------------------------------
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----------TGGGTAGTCTTCAACATAAA-ATGTGATTTATATTAATTAAGTGCAACGGTACACCAGTCCAGCACTAAT
GTCTCGTGATA-----------------------------------------------------------------CGTG
GGGCACTTCTTTAACTCCCTTCTAGACGACGGCCCACACCACGCCTTCTACACCACAGAGCATCTTAAGAGTACTTTGGA
ATCCTGCATATATATGCACATCGTCTGAAAATAAAAATGTATAATCGCGTAAAGTATCATGTTTCGGCCACATAACCCCT
GACCGTCAAAATCAAAATCTTAATTATCTCAACTTTTAAAAATCAAATAAATCACGCCCTAAAGAGGCTACCCACGGTGG
TTTTGCTTATGTGGCGACAAGCTGACACATGAAAGAGCATTGCGTTGCCACGTTGAACACTTTGTGTGCGCCC-------
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>chr3A_989
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----------------------------------------------------------AAAGGAAGACGAACTGCACGTA
CGCAAGCGTAGCTGACTAGCGTCTTTGCTCTA-CTCTACTGTACTGTACGCCATGGCGATGAAGAAGACGAGCACCC---
------TGTGCTGCAGCTTCGTGGCCGCCCTCGTGGTGGTCATGGCTGCCACCCTCCTCCTCTCCTCATGCGATGCCCAC
AAAGAGGTTAGTAATACGTATTTGATTTGCACGG--TCTCTGAGATCAGAAGATTTAGTACACAG-TTGCTTTCCAGATG
GATGATCTTGCTGCTTCTTTTGTGCCGGCGTCGTGCTACTCCAACTACTTCCCGCACTGCACCGATCACCGGTGCAAGAA
GTTCTGCGGCGGCGTGCGGGCGCCGCCGGTGCCCGGAGCCTTCTGTAACGACAGAAGCAACTGCTGCTGCCCCGTTAGTT
GAGCTCCGTAGAAACGACTCAAGATGCCTATAAGCATAAATAATTTTGATGCTAAGAAATATATTTGGGGATGCTTTCAT
GGAACGTTGGACAGGCTCAGCAAGACGTTTTCTAATCTTCTGTAAACCGGCTTAGAGTAAATTGTTTGTCTT--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------------SSS------S-----
------------------------S-------------------------------------------------------
-S-------------------S-S---S-------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------S--------S-------------------------------------S
------------------------------------------------S---------------S--------S------
-----------S-S-----------------------------S-------------------S---------S------
-------------------------------------------S----S---S---------------------------
-------S-----------------------------------S--S---------------------------------
--------S-----------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------SSSSS-------------------------------
--------------------------------------------S----------------------S---S--------
------------------------SS------S----S-----------------------------------------S
--------------S------S------S------------------------------S---S--------------S-
S-------------------------------------------------------------------------------
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------------------------------S---------------------S---------------------------
---------S-------------------------------------S-----S--------------------------
------------------S------S-----S----------------------------------------S-------
---S------S---S--SS-S-----S------S---S---------------------S-------S--------SSS-
------S--------------S--------S----S--S-------------S---S-----S--S-------------S
-----S--S------------S-------S-------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------------S-S---S----------------------S--S----------S------------
-----S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S
----------SS-------S----------------------S-------------------------S-----------
-------------S---S-S-S--S------SS-----------S-S------------S--------------------
------------S-S-------------------------------------------------S--S------------
-------S-----S--S-S----S-S-----------------SS-----------------S----------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_344
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----GAAGACCCTCATGCAACCCA--------------------------------------------------------
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>reverse_2365
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--------------------------------------------CTGCCACGTTGAACACTTCG----------------
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