Multiple sequence alignment - TraesCS3B01G071400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G071400 chr3B 100.000 4086 0 0 1 4086 43176243 43180328 0.000000e+00 7546.0
1 TraesCS3B01G071400 chr3B 98.621 145 2 0 719 863 237604358 237604214 1.460000e-64 257.0
2 TraesCS3B01G071400 chr3B 98.611 144 2 0 719 862 137604774 137604917 5.240000e-64 255.0
3 TraesCS3B01G071400 chr3D 96.605 2533 67 3 893 3407 25974270 25976801 0.000000e+00 4183.0
4 TraesCS3B01G071400 chr3D 95.047 424 14 5 3572 3991 25977363 25977783 0.000000e+00 660.0
5 TraesCS3B01G071400 chr3D 88.561 542 26 8 198 722 25973680 25974202 3.470000e-175 625.0
6 TraesCS3B01G071400 chr3D 95.833 168 6 1 3407 3574 25976837 25977003 1.870000e-68 270.0
7 TraesCS3B01G071400 chr3D 97.143 70 1 1 861 930 25974200 25974268 2.580000e-22 117.0
8 TraesCS3B01G071400 chr3A 96.494 2025 65 3 1383 3404 35049137 35051158 0.000000e+00 3341.0
9 TraesCS3B01G071400 chr3A 94.258 1759 92 6 893 2646 35502193 35503947 0.000000e+00 2680.0
10 TraesCS3B01G071400 chr3A 92.338 770 54 3 2641 3407 35647314 35648081 0.000000e+00 1090.0
11 TraesCS3B01G071400 chr3A 92.435 423 20 1 975 1385 35046504 35046926 9.780000e-166 593.0
12 TraesCS3B01G071400 chr3A 90.176 397 32 3 332 722 35045780 35046175 1.010000e-140 510.0
13 TraesCS3B01G071400 chr3A 92.458 358 25 2 3407 3763 35051197 35051553 1.010000e-140 510.0
14 TraesCS3B01G071400 chr3A 87.371 388 43 1 332 713 35501784 35502171 1.350000e-119 440.0
15 TraesCS3B01G071400 chr3A 93.590 78 5 0 895 972 35046253 35046330 2.580000e-22 117.0
16 TraesCS3B01G071400 chr3A 93.590 78 5 0 3407 3484 35648117 35648194 2.580000e-22 117.0
17 TraesCS3B01G071400 chr3A 91.304 69 2 4 861 927 35046173 35046239 1.560000e-14 91.6
18 TraesCS3B01G071400 chr5B 96.835 158 4 1 719 876 447183855 447183699 3.130000e-66 263.0
19 TraesCS3B01G071400 chr5B 96.154 156 5 1 707 861 578136628 578136783 1.890000e-63 254.0
20 TraesCS3B01G071400 chr6B 97.315 149 4 0 715 863 125024969 125024821 1.890000e-63 254.0
21 TraesCS3B01G071400 chr6B 97.945 146 2 1 716 861 564311858 564312002 6.780000e-63 252.0
22 TraesCS3B01G071400 chr6B 97.297 148 3 1 720 867 121791568 121791714 2.440000e-62 250.0
23 TraesCS3B01G071400 chr6B 94.410 161 8 1 701 861 647570166 647570325 3.150000e-61 246.0
24 TraesCS3B01G071400 chrUn 97.297 148 3 1 720 867 39189417 39189563 2.440000e-62 250.0
25 TraesCS3B01G071400 chr2B 87.500 64 8 0 134 197 494379550 494379487 1.580000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G071400 chr3B 43176243 43180328 4085 False 7546.000000 7546 100.000000 1 4086 1 chr3B.!!$F1 4085
1 TraesCS3B01G071400 chr3D 25973680 25977783 4103 False 1171.000000 4183 94.637800 198 3991 5 chr3D.!!$F1 3793
2 TraesCS3B01G071400 chr3A 35501784 35503947 2163 False 1560.000000 2680 90.814500 332 2646 2 chr3A.!!$F2 2314
3 TraesCS3B01G071400 chr3A 35045780 35051553 5773 False 860.433333 3341 92.742833 332 3763 6 chr3A.!!$F1 3431
4 TraesCS3B01G071400 chr3A 35647314 35648194 880 False 603.500000 1090 92.964000 2641 3484 2 chr3A.!!$F3 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 845 0.033109 CTCAAACCTCCCCAATCCCC 60.033 60.0 0.0 0.0 0.00 4.81 F
850 874 0.034477 AGTGGCAAGGGGATTAACCG 60.034 55.0 0.0 0.0 40.11 4.44 F
851 875 0.034863 GTGGCAAGGGGATTAACCGA 60.035 55.0 0.0 0.0 40.11 4.69 F
1541 4009 0.673437 CGCTGGAAGGGCAAAGAAAA 59.327 50.0 0.0 0.0 41.12 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 4523 1.070577 GCATCCTTGTAATACAGCGCG 60.071 52.381 0.00 0.0 0.0 6.86 R
2266 4734 2.151502 TGCCCTTTTGTCACTCCAAA 57.848 45.000 0.00 0.0 32.7 3.28 R
2560 5028 2.315925 TCGAACAGATCATCCTTGGC 57.684 50.000 0.00 0.0 0.0 4.52 R
3154 5625 2.007608 CTGACTGCCATGACACATGAG 58.992 52.381 12.46 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.416351 TGCGAGAGGAGAGGAGGA 58.584 61.111 0.00 0.00 0.00 3.71
22 23 1.077357 TGCGAGAGGAGAGGAGGAC 60.077 63.158 0.00 0.00 0.00 3.85
23 24 2.184167 GCGAGAGGAGAGGAGGACG 61.184 68.421 0.00 0.00 0.00 4.79
24 25 1.523046 CGAGAGGAGAGGAGGACGA 59.477 63.158 0.00 0.00 0.00 4.20
25 26 0.812412 CGAGAGGAGAGGAGGACGAC 60.812 65.000 0.00 0.00 0.00 4.34
26 27 0.464916 GAGAGGAGAGGAGGACGACC 60.465 65.000 0.00 0.00 0.00 4.79
27 28 1.820481 GAGGAGAGGAGGACGACCG 60.820 68.421 0.00 0.00 41.83 4.79
28 29 2.829458 GGAGAGGAGGACGACCGG 60.829 72.222 0.00 0.00 41.83 5.28
29 30 2.829458 GAGAGGAGGACGACCGGG 60.829 72.222 6.32 0.00 41.83 5.73
47 48 4.504916 CTCCGACCAGCGAGCAGG 62.505 72.222 4.92 4.92 44.57 4.85
68 69 3.541713 GGGGAGCAGGACGGCTAG 61.542 72.222 0.00 0.00 45.99 3.42
69 70 3.541713 GGGAGCAGGACGGCTAGG 61.542 72.222 0.00 0.00 45.99 3.02
70 71 3.541713 GGAGCAGGACGGCTAGGG 61.542 72.222 0.00 0.00 45.99 3.53
71 72 4.228567 GAGCAGGACGGCTAGGGC 62.229 72.222 0.00 0.00 45.99 5.19
81 82 4.541648 GCTAGGGCGAGAGGGGGA 62.542 72.222 0.00 0.00 0.00 4.81
82 83 2.203567 CTAGGGCGAGAGGGGGAG 60.204 72.222 0.00 0.00 0.00 4.30
83 84 3.819016 CTAGGGCGAGAGGGGGAGG 62.819 73.684 0.00 0.00 0.00 4.30
88 89 4.548513 CGAGAGGGGGAGGAGGGG 62.549 77.778 0.00 0.00 0.00 4.79
89 90 4.179599 GAGAGGGGGAGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
90 91 4.761304 AGAGGGGGAGGAGGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
91 92 4.179599 GAGGGGGAGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
94 95 4.179599 GGGGAGGAGGGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
95 96 4.179599 GGGAGGAGGGGGAGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
96 97 4.179599 GGAGGAGGGGGAGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
97 98 3.036959 GAGGAGGGGGAGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
98 99 3.039526 AGGAGGGGGAGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
99 100 4.179599 GGAGGGGGAGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
100 101 3.036959 GAGGGGGAGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
101 102 2.543637 AGGGGGAGGAGGGAGGAA 60.544 66.667 0.00 0.00 0.00 3.36
102 103 2.040359 GGGGGAGGAGGGAGGAAG 60.040 72.222 0.00 0.00 0.00 3.46
103 104 2.040359 GGGGAGGAGGGAGGAAGG 60.040 72.222 0.00 0.00 0.00 3.46
104 105 2.040359 GGGAGGAGGGAGGAAGGG 60.040 72.222 0.00 0.00 0.00 3.95
105 106 2.040359 GGAGGAGGGAGGAAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
106 107 2.647949 GGAGGAGGGAGGAAGGGGA 61.648 68.421 0.00 0.00 0.00 4.81
107 108 1.635051 GAGGAGGGAGGAAGGGGAT 59.365 63.158 0.00 0.00 0.00 3.85
108 109 0.472925 GAGGAGGGAGGAAGGGGATC 60.473 65.000 0.00 0.00 0.00 3.36
109 110 1.462432 GGAGGGAGGAAGGGGATCC 60.462 68.421 1.92 1.92 39.96 3.36
110 111 1.318380 GAGGGAGGAAGGGGATCCA 59.682 63.158 15.23 0.00 42.27 3.41
111 112 0.104197 GAGGGAGGAAGGGGATCCAT 60.104 60.000 15.23 0.00 42.27 3.41
112 113 0.104197 AGGGAGGAAGGGGATCCATC 60.104 60.000 15.23 8.43 42.27 3.51
113 114 0.104197 GGGAGGAAGGGGATCCATCT 60.104 60.000 15.23 7.58 42.27 2.90
114 115 1.063183 GGAGGAAGGGGATCCATCTG 58.937 60.000 15.23 0.00 42.27 2.90
115 116 1.697291 GGAGGAAGGGGATCCATCTGT 60.697 57.143 15.23 2.01 42.27 3.41
116 117 2.131023 GAGGAAGGGGATCCATCTGTT 58.869 52.381 15.23 0.00 42.27 3.16
117 118 2.511637 GAGGAAGGGGATCCATCTGTTT 59.488 50.000 15.23 0.00 42.27 2.83
118 119 2.243221 AGGAAGGGGATCCATCTGTTTG 59.757 50.000 15.23 0.00 42.27 2.93
119 120 2.024941 GGAAGGGGATCCATCTGTTTGT 60.025 50.000 15.23 0.00 39.42 2.83
120 121 3.282885 GAAGGGGATCCATCTGTTTGTC 58.717 50.000 15.23 1.13 34.83 3.18
121 122 1.566231 AGGGGATCCATCTGTTTGTCC 59.434 52.381 15.23 0.83 34.83 4.02
122 123 1.668419 GGGATCCATCTGTTTGTCCG 58.332 55.000 15.23 0.00 0.00 4.79
123 124 1.065418 GGGATCCATCTGTTTGTCCGT 60.065 52.381 15.23 0.00 0.00 4.69
124 125 2.618045 GGGATCCATCTGTTTGTCCGTT 60.618 50.000 15.23 0.00 0.00 4.44
125 126 3.081804 GGATCCATCTGTTTGTCCGTTT 58.918 45.455 6.95 0.00 0.00 3.60
126 127 3.127030 GGATCCATCTGTTTGTCCGTTTC 59.873 47.826 6.95 0.00 0.00 2.78
127 128 2.500229 TCCATCTGTTTGTCCGTTTCC 58.500 47.619 0.00 0.00 0.00 3.13
128 129 2.105821 TCCATCTGTTTGTCCGTTTCCT 59.894 45.455 0.00 0.00 0.00 3.36
129 130 2.884639 CCATCTGTTTGTCCGTTTCCTT 59.115 45.455 0.00 0.00 0.00 3.36
130 131 4.069304 CCATCTGTTTGTCCGTTTCCTTA 58.931 43.478 0.00 0.00 0.00 2.69
131 132 4.154195 CCATCTGTTTGTCCGTTTCCTTAG 59.846 45.833 0.00 0.00 0.00 2.18
132 133 4.675976 TCTGTTTGTCCGTTTCCTTAGA 57.324 40.909 0.00 0.00 0.00 2.10
133 134 5.026038 TCTGTTTGTCCGTTTCCTTAGAA 57.974 39.130 0.00 0.00 0.00 2.10
134 135 5.430007 TCTGTTTGTCCGTTTCCTTAGAAA 58.570 37.500 0.00 0.00 39.70 2.52
135 136 5.881443 TCTGTTTGTCCGTTTCCTTAGAAAA 59.119 36.000 0.00 0.00 43.48 2.29
136 137 6.374894 TCTGTTTGTCCGTTTCCTTAGAAAAA 59.625 34.615 0.00 0.00 43.48 1.94
137 138 6.557110 TGTTTGTCCGTTTCCTTAGAAAAAG 58.443 36.000 0.00 0.00 43.48 2.27
138 139 6.151480 TGTTTGTCCGTTTCCTTAGAAAAAGT 59.849 34.615 0.00 0.00 43.48 2.66
139 140 6.762702 TTGTCCGTTTCCTTAGAAAAAGTT 57.237 33.333 0.00 0.00 43.48 2.66
140 141 6.762702 TGTCCGTTTCCTTAGAAAAAGTTT 57.237 33.333 0.00 0.00 43.48 2.66
141 142 7.160547 TGTCCGTTTCCTTAGAAAAAGTTTT 57.839 32.000 0.00 0.00 43.48 2.43
142 143 7.604549 TGTCCGTTTCCTTAGAAAAAGTTTTT 58.395 30.769 13.35 13.35 43.48 1.94
163 164 7.513371 TTTTTAGCCTGAAATAAGGAAACGA 57.487 32.000 0.00 0.00 40.02 3.85
164 165 7.513371 TTTTAGCCTGAAATAAGGAAACGAA 57.487 32.000 0.00 0.00 40.02 3.85
165 166 7.513371 TTTAGCCTGAAATAAGGAAACGAAA 57.487 32.000 0.00 0.00 40.02 3.46
166 167 7.696992 TTAGCCTGAAATAAGGAAACGAAAT 57.303 32.000 0.00 0.00 40.02 2.17
167 168 6.590234 AGCCTGAAATAAGGAAACGAAATT 57.410 33.333 0.00 0.00 40.02 1.82
168 169 6.621613 AGCCTGAAATAAGGAAACGAAATTC 58.378 36.000 0.00 0.00 40.02 2.17
169 170 6.208599 AGCCTGAAATAAGGAAACGAAATTCA 59.791 34.615 0.00 0.00 40.02 2.57
170 171 6.866248 GCCTGAAATAAGGAAACGAAATTCAA 59.134 34.615 0.00 0.00 40.02 2.69
171 172 7.383843 GCCTGAAATAAGGAAACGAAATTCAAA 59.616 33.333 0.00 0.00 40.02 2.69
172 173 9.255304 CCTGAAATAAGGAAACGAAATTCAAAA 57.745 29.630 0.00 0.00 40.02 2.44
174 175 9.587772 TGAAATAAGGAAACGAAATTCAAAACA 57.412 25.926 0.00 0.00 0.00 2.83
176 177 9.594478 AAATAAGGAAACGAAATTCAAAACAGT 57.406 25.926 0.00 0.00 0.00 3.55
177 178 6.885735 AAGGAAACGAAATTCAAAACAGTG 57.114 33.333 0.00 0.00 0.00 3.66
178 179 5.961272 AGGAAACGAAATTCAAAACAGTGT 58.039 33.333 0.00 0.00 0.00 3.55
179 180 6.394809 AGGAAACGAAATTCAAAACAGTGTT 58.605 32.000 1.64 1.64 0.00 3.32
180 181 7.540299 AGGAAACGAAATTCAAAACAGTGTTA 58.460 30.769 9.37 0.00 0.00 2.41
181 182 8.030106 AGGAAACGAAATTCAAAACAGTGTTAA 58.970 29.630 9.37 0.10 0.00 2.01
182 183 8.648968 GGAAACGAAATTCAAAACAGTGTTAAA 58.351 29.630 9.37 5.00 0.00 1.52
220 226 2.352127 GGCTTTAAGCTGCTGTTTGAGG 60.352 50.000 16.89 0.00 41.99 3.86
255 261 2.999063 GTGCAGCCTGGCCCATTT 60.999 61.111 16.57 0.00 0.00 2.32
258 264 1.376295 GCAGCCTGGCCCATTTTTG 60.376 57.895 16.57 6.25 0.00 2.44
260 266 0.037046 CAGCCTGGCCCATTTTTGAC 60.037 55.000 16.57 0.00 0.00 3.18
261 267 0.178924 AGCCTGGCCCATTTTTGACT 60.179 50.000 16.57 0.00 0.00 3.41
262 268 0.247460 GCCTGGCCCATTTTTGACTC 59.753 55.000 7.66 0.00 0.00 3.36
263 269 0.527565 CCTGGCCCATTTTTGACTCG 59.472 55.000 0.00 0.00 0.00 4.18
264 270 0.109132 CTGGCCCATTTTTGACTCGC 60.109 55.000 0.00 0.00 0.00 5.03
265 271 0.539438 TGGCCCATTTTTGACTCGCT 60.539 50.000 0.00 0.00 0.00 4.93
277 295 1.418637 TGACTCGCTTTAAACCCCTGT 59.581 47.619 0.00 0.00 0.00 4.00
289 307 3.297620 CCCTGTTTTGCAGCGCCT 61.298 61.111 2.29 0.00 43.71 5.52
311 329 5.105595 CCTCTTCACTTTTCCCCATTTCATC 60.106 44.000 0.00 0.00 0.00 2.92
312 330 4.772100 TCTTCACTTTTCCCCATTTCATCC 59.228 41.667 0.00 0.00 0.00 3.51
313 331 3.440127 TCACTTTTCCCCATTTCATCCC 58.560 45.455 0.00 0.00 0.00 3.85
314 332 3.172339 CACTTTTCCCCATTTCATCCCA 58.828 45.455 0.00 0.00 0.00 4.37
315 333 3.582208 CACTTTTCCCCATTTCATCCCAA 59.418 43.478 0.00 0.00 0.00 4.12
316 334 4.041444 CACTTTTCCCCATTTCATCCCAAA 59.959 41.667 0.00 0.00 0.00 3.28
317 335 4.041567 ACTTTTCCCCATTTCATCCCAAAC 59.958 41.667 0.00 0.00 0.00 2.93
318 336 2.246091 TCCCCATTTCATCCCAAACC 57.754 50.000 0.00 0.00 0.00 3.27
319 337 1.203237 CCCCATTTCATCCCAAACCC 58.797 55.000 0.00 0.00 0.00 4.11
320 338 1.203237 CCCATTTCATCCCAAACCCC 58.797 55.000 0.00 0.00 0.00 4.95
321 339 1.273781 CCCATTTCATCCCAAACCCCT 60.274 52.381 0.00 0.00 0.00 4.79
322 340 2.023501 CCCATTTCATCCCAAACCCCTA 60.024 50.000 0.00 0.00 0.00 3.53
323 341 3.567663 CCCATTTCATCCCAAACCCCTAA 60.568 47.826 0.00 0.00 0.00 2.69
324 342 4.100373 CCATTTCATCCCAAACCCCTAAA 58.900 43.478 0.00 0.00 0.00 1.85
325 343 4.534103 CCATTTCATCCCAAACCCCTAAAA 59.466 41.667 0.00 0.00 0.00 1.52
326 344 5.013599 CCATTTCATCCCAAACCCCTAAAAA 59.986 40.000 0.00 0.00 0.00 1.94
494 518 3.181447 TGCTTCTCATCTTCATCCCATCC 60.181 47.826 0.00 0.00 0.00 3.51
555 579 1.933853 CGTAAATTCCTCCTTCCGCAG 59.066 52.381 0.00 0.00 0.00 5.18
567 591 0.321346 TTCCGCAGTCAGATGAAGCA 59.679 50.000 8.62 0.00 0.00 3.91
576 600 3.840666 AGTCAGATGAAGCAGAACCCTAA 59.159 43.478 0.00 0.00 0.00 2.69
606 630 3.181470 CGGTGTTTTTCCTTGGATTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
659 683 2.418976 GCGTCTTGAAACCTAATGGGAC 59.581 50.000 0.00 0.00 38.76 4.46
722 746 4.076394 TCCTTTGATTTGGGACCGTTAAG 58.924 43.478 0.00 0.00 0.00 1.85
724 748 1.828979 TGATTTGGGACCGTTAAGGC 58.171 50.000 0.00 0.00 46.52 4.35
725 749 1.100510 GATTTGGGACCGTTAAGGCC 58.899 55.000 0.00 0.00 46.52 5.19
726 750 0.702316 ATTTGGGACCGTTAAGGCCT 59.298 50.000 0.00 0.00 46.52 5.19
727 751 0.479378 TTTGGGACCGTTAAGGCCTT 59.521 50.000 24.18 24.18 46.52 4.35
728 752 0.250989 TTGGGACCGTTAAGGCCTTG 60.251 55.000 28.77 13.66 46.52 3.61
729 753 1.377612 GGGACCGTTAAGGCCTTGT 59.622 57.895 28.77 17.09 46.52 3.16
730 754 0.251033 GGGACCGTTAAGGCCTTGTT 60.251 55.000 28.77 4.09 46.52 2.83
731 755 1.162698 GGACCGTTAAGGCCTTGTTC 58.837 55.000 28.77 12.23 46.52 3.18
732 756 0.794473 GACCGTTAAGGCCTTGTTCG 59.206 55.000 28.77 25.01 46.52 3.95
733 757 0.604511 ACCGTTAAGGCCTTGTTCGG 60.605 55.000 34.48 34.48 46.52 4.30
734 758 0.604511 CCGTTAAGGCCTTGTTCGGT 60.605 55.000 31.24 11.64 33.20 4.69
735 759 1.232119 CGTTAAGGCCTTGTTCGGTT 58.768 50.000 28.77 0.57 0.00 4.44
736 760 1.605232 CGTTAAGGCCTTGTTCGGTTT 59.395 47.619 28.77 0.00 0.00 3.27
737 761 2.603652 CGTTAAGGCCTTGTTCGGTTTG 60.604 50.000 28.77 3.60 0.00 2.93
738 762 1.611519 TAAGGCCTTGTTCGGTTTGG 58.388 50.000 28.77 0.00 0.00 3.28
739 763 1.112916 AAGGCCTTGTTCGGTTTGGG 61.113 55.000 19.73 0.00 0.00 4.12
740 764 1.529713 GGCCTTGTTCGGTTTGGGA 60.530 57.895 0.00 0.00 0.00 4.37
741 765 1.524008 GGCCTTGTTCGGTTTGGGAG 61.524 60.000 0.00 0.00 0.00 4.30
742 766 1.524008 GCCTTGTTCGGTTTGGGAGG 61.524 60.000 0.00 0.00 0.00 4.30
743 767 0.893727 CCTTGTTCGGTTTGGGAGGG 60.894 60.000 0.00 0.00 0.00 4.30
744 768 0.179001 CTTGTTCGGTTTGGGAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
745 769 0.259356 TTGTTCGGTTTGGGAGGGTT 59.741 50.000 0.00 0.00 0.00 4.11
746 770 0.259356 TGTTCGGTTTGGGAGGGTTT 59.741 50.000 0.00 0.00 0.00 3.27
747 771 0.671796 GTTCGGTTTGGGAGGGTTTG 59.328 55.000 0.00 0.00 0.00 2.93
748 772 0.551879 TTCGGTTTGGGAGGGTTTGA 59.448 50.000 0.00 0.00 0.00 2.69
749 773 0.551879 TCGGTTTGGGAGGGTTTGAA 59.448 50.000 0.00 0.00 0.00 2.69
750 774 0.958822 CGGTTTGGGAGGGTTTGAAG 59.041 55.000 0.00 0.00 0.00 3.02
751 775 1.477923 CGGTTTGGGAGGGTTTGAAGA 60.478 52.381 0.00 0.00 0.00 2.87
752 776 2.239400 GGTTTGGGAGGGTTTGAAGAG 58.761 52.381 0.00 0.00 0.00 2.85
753 777 2.239400 GTTTGGGAGGGTTTGAAGAGG 58.761 52.381 0.00 0.00 0.00 3.69
754 778 1.529744 TTGGGAGGGTTTGAAGAGGT 58.470 50.000 0.00 0.00 0.00 3.85
755 779 1.529744 TGGGAGGGTTTGAAGAGGTT 58.470 50.000 0.00 0.00 0.00 3.50
756 780 1.856920 TGGGAGGGTTTGAAGAGGTTT 59.143 47.619 0.00 0.00 0.00 3.27
757 781 2.239400 GGGAGGGTTTGAAGAGGTTTG 58.761 52.381 0.00 0.00 0.00 2.93
758 782 2.158519 GGGAGGGTTTGAAGAGGTTTGA 60.159 50.000 0.00 0.00 0.00 2.69
759 783 3.562182 GGAGGGTTTGAAGAGGTTTGAA 58.438 45.455 0.00 0.00 0.00 2.69
760 784 3.958147 GGAGGGTTTGAAGAGGTTTGAAA 59.042 43.478 0.00 0.00 0.00 2.69
761 785 4.038042 GGAGGGTTTGAAGAGGTTTGAAAG 59.962 45.833 0.00 0.00 0.00 2.62
762 786 3.960755 AGGGTTTGAAGAGGTTTGAAAGG 59.039 43.478 0.00 0.00 0.00 3.11
763 787 3.069586 GGGTTTGAAGAGGTTTGAAAGGG 59.930 47.826 0.00 0.00 0.00 3.95
764 788 3.958147 GGTTTGAAGAGGTTTGAAAGGGA 59.042 43.478 0.00 0.00 0.00 4.20
765 789 4.588951 GGTTTGAAGAGGTTTGAAAGGGAT 59.411 41.667 0.00 0.00 0.00 3.85
766 790 5.070446 GGTTTGAAGAGGTTTGAAAGGGATT 59.930 40.000 0.00 0.00 0.00 3.01
767 791 5.789643 TTGAAGAGGTTTGAAAGGGATTG 57.210 39.130 0.00 0.00 0.00 2.67
768 792 5.060427 TGAAGAGGTTTGAAAGGGATTGA 57.940 39.130 0.00 0.00 0.00 2.57
769 793 5.454062 TGAAGAGGTTTGAAAGGGATTGAA 58.546 37.500 0.00 0.00 0.00 2.69
770 794 5.536161 TGAAGAGGTTTGAAAGGGATTGAAG 59.464 40.000 0.00 0.00 0.00 3.02
771 795 4.411013 AGAGGTTTGAAAGGGATTGAAGG 58.589 43.478 0.00 0.00 0.00 3.46
772 796 3.510459 AGGTTTGAAAGGGATTGAAGGG 58.490 45.455 0.00 0.00 0.00 3.95
773 797 2.567169 GGTTTGAAAGGGATTGAAGGGG 59.433 50.000 0.00 0.00 0.00 4.79
774 798 3.506398 GTTTGAAAGGGATTGAAGGGGA 58.494 45.455 0.00 0.00 0.00 4.81
775 799 4.096681 GTTTGAAAGGGATTGAAGGGGAT 58.903 43.478 0.00 0.00 0.00 3.85
776 800 4.418395 TTGAAAGGGATTGAAGGGGATT 57.582 40.909 0.00 0.00 0.00 3.01
777 801 5.544441 TTGAAAGGGATTGAAGGGGATTA 57.456 39.130 0.00 0.00 0.00 1.75
778 802 5.544441 TGAAAGGGATTGAAGGGGATTAA 57.456 39.130 0.00 0.00 0.00 1.40
779 803 5.909760 TGAAAGGGATTGAAGGGGATTAAA 58.090 37.500 0.00 0.00 0.00 1.52
780 804 6.511208 TGAAAGGGATTGAAGGGGATTAAAT 58.489 36.000 0.00 0.00 0.00 1.40
781 805 6.611236 TGAAAGGGATTGAAGGGGATTAAATC 59.389 38.462 0.00 0.00 37.85 2.17
794 818 5.659440 GGATTAAATCCCTTGCAAGTCAA 57.341 39.130 24.35 10.08 43.88 3.18
795 819 6.036577 GGATTAAATCCCTTGCAAGTCAAA 57.963 37.500 24.35 10.27 43.88 2.69
796 820 6.463360 GGATTAAATCCCTTGCAAGTCAAAA 58.537 36.000 24.35 11.23 43.88 2.44
797 821 7.105588 GGATTAAATCCCTTGCAAGTCAAAAT 58.894 34.615 24.35 14.96 43.88 1.82
798 822 7.278646 GGATTAAATCCCTTGCAAGTCAAAATC 59.721 37.037 24.35 20.70 43.88 2.17
799 823 4.541973 AATCCCTTGCAAGTCAAAATCC 57.458 40.909 24.35 0.00 33.65 3.01
800 824 3.243359 TCCCTTGCAAGTCAAAATCCT 57.757 42.857 24.35 0.00 33.65 3.24
801 825 3.575805 TCCCTTGCAAGTCAAAATCCTT 58.424 40.909 24.35 0.00 33.65 3.36
802 826 3.573967 TCCCTTGCAAGTCAAAATCCTTC 59.426 43.478 24.35 0.00 33.65 3.46
803 827 3.575687 CCCTTGCAAGTCAAAATCCTTCT 59.424 43.478 24.35 0.00 33.65 2.85
804 828 4.321527 CCCTTGCAAGTCAAAATCCTTCTC 60.322 45.833 24.35 0.00 33.65 2.87
805 829 4.279169 CCTTGCAAGTCAAAATCCTTCTCA 59.721 41.667 24.35 0.00 33.65 3.27
806 830 5.221303 CCTTGCAAGTCAAAATCCTTCTCAA 60.221 40.000 24.35 0.00 33.65 3.02
807 831 5.850557 TGCAAGTCAAAATCCTTCTCAAA 57.149 34.783 0.00 0.00 0.00 2.69
808 832 5.591099 TGCAAGTCAAAATCCTTCTCAAAC 58.409 37.500 0.00 0.00 0.00 2.93
809 833 4.984785 GCAAGTCAAAATCCTTCTCAAACC 59.015 41.667 0.00 0.00 0.00 3.27
810 834 5.221322 GCAAGTCAAAATCCTTCTCAAACCT 60.221 40.000 0.00 0.00 0.00 3.50
811 835 6.442112 CAAGTCAAAATCCTTCTCAAACCTC 58.558 40.000 0.00 0.00 0.00 3.85
812 836 5.073428 AGTCAAAATCCTTCTCAAACCTCC 58.927 41.667 0.00 0.00 0.00 4.30
813 837 4.218635 GTCAAAATCCTTCTCAAACCTCCC 59.781 45.833 0.00 0.00 0.00 4.30
814 838 3.458044 AAATCCTTCTCAAACCTCCCC 57.542 47.619 0.00 0.00 0.00 4.81
815 839 2.059756 ATCCTTCTCAAACCTCCCCA 57.940 50.000 0.00 0.00 0.00 4.96
816 840 1.827792 TCCTTCTCAAACCTCCCCAA 58.172 50.000 0.00 0.00 0.00 4.12
817 841 2.358258 TCCTTCTCAAACCTCCCCAAT 58.642 47.619 0.00 0.00 0.00 3.16
818 842 2.308866 TCCTTCTCAAACCTCCCCAATC 59.691 50.000 0.00 0.00 0.00 2.67
819 843 2.621668 CCTTCTCAAACCTCCCCAATCC 60.622 54.545 0.00 0.00 0.00 3.01
820 844 0.999712 TCTCAAACCTCCCCAATCCC 59.000 55.000 0.00 0.00 0.00 3.85
821 845 0.033109 CTCAAACCTCCCCAATCCCC 60.033 60.000 0.00 0.00 0.00 4.81
822 846 0.479589 TCAAACCTCCCCAATCCCCT 60.480 55.000 0.00 0.00 0.00 4.79
823 847 0.413434 CAAACCTCCCCAATCCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
824 848 0.710588 AAACCTCCCCAATCCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
825 849 0.479589 AACCTCCCCAATCCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
826 850 0.479589 ACCTCCCCAATCCCCTTCAA 60.480 55.000 0.00 0.00 0.00 2.69
827 851 0.936691 CCTCCCCAATCCCCTTCAAT 59.063 55.000 0.00 0.00 0.00 2.57
828 852 1.133356 CCTCCCCAATCCCCTTCAATC 60.133 57.143 0.00 0.00 0.00 2.67
829 853 0.933700 TCCCCAATCCCCTTCAATCC 59.066 55.000 0.00 0.00 0.00 3.01
830 854 0.105504 CCCCAATCCCCTTCAATCCC 60.106 60.000 0.00 0.00 0.00 3.85
831 855 0.636101 CCCAATCCCCTTCAATCCCA 59.364 55.000 0.00 0.00 0.00 4.37
832 856 1.412074 CCCAATCCCCTTCAATCCCAG 60.412 57.143 0.00 0.00 0.00 4.45
833 857 1.288932 CCAATCCCCTTCAATCCCAGT 59.711 52.381 0.00 0.00 0.00 4.00
834 858 2.381911 CAATCCCCTTCAATCCCAGTG 58.618 52.381 0.00 0.00 0.00 3.66
835 859 0.929244 ATCCCCTTCAATCCCAGTGG 59.071 55.000 0.63 0.63 0.00 4.00
836 860 1.380380 CCCCTTCAATCCCAGTGGC 60.380 63.158 2.61 0.00 0.00 5.01
837 861 1.383799 CCCTTCAATCCCAGTGGCA 59.616 57.895 2.61 0.00 0.00 4.92
838 862 0.251742 CCCTTCAATCCCAGTGGCAA 60.252 55.000 2.61 0.00 0.00 4.52
839 863 1.180029 CCTTCAATCCCAGTGGCAAG 58.820 55.000 2.61 0.23 0.00 4.01
840 864 1.180029 CTTCAATCCCAGTGGCAAGG 58.820 55.000 2.61 0.00 0.00 3.61
841 865 0.251742 TTCAATCCCAGTGGCAAGGG 60.252 55.000 17.88 17.88 46.90 3.95
842 866 1.683365 CAATCCCAGTGGCAAGGGG 60.683 63.158 22.13 19.49 45.51 4.79
844 868 2.204291 TCCCAGTGGCAAGGGGAT 60.204 61.111 20.33 0.00 45.83 3.85
845 869 1.856873 TCCCAGTGGCAAGGGGATT 60.857 57.895 20.33 0.00 45.83 3.01
846 870 0.551377 TCCCAGTGGCAAGGGGATTA 60.551 55.000 20.33 2.84 45.83 1.75
847 871 0.334676 CCCAGTGGCAAGGGGATTAA 59.665 55.000 17.60 0.00 45.08 1.40
848 872 1.474330 CCAGTGGCAAGGGGATTAAC 58.526 55.000 0.00 0.00 0.00 2.01
849 873 1.474330 CAGTGGCAAGGGGATTAACC 58.526 55.000 0.00 0.00 38.08 2.85
850 874 0.034477 AGTGGCAAGGGGATTAACCG 60.034 55.000 0.00 0.00 40.11 4.44
851 875 0.034863 GTGGCAAGGGGATTAACCGA 60.035 55.000 0.00 0.00 40.11 4.69
852 876 0.699399 TGGCAAGGGGATTAACCGAA 59.301 50.000 0.00 0.00 40.11 4.30
853 877 1.100510 GGCAAGGGGATTAACCGAAC 58.899 55.000 0.00 0.00 40.11 3.95
854 878 1.614850 GGCAAGGGGATTAACCGAACA 60.615 52.381 0.00 0.00 40.11 3.18
855 879 2.375146 GCAAGGGGATTAACCGAACAT 58.625 47.619 0.00 0.00 40.11 2.71
856 880 2.099098 GCAAGGGGATTAACCGAACATG 59.901 50.000 0.00 0.00 40.11 3.21
857 881 2.687935 CAAGGGGATTAACCGAACATGG 59.312 50.000 0.00 0.00 40.11 3.66
858 882 1.029681 GGGGATTAACCGAACATGGC 58.970 55.000 0.00 0.00 40.11 4.40
859 883 1.029681 GGGATTAACCGAACATGGCC 58.970 55.000 0.00 0.00 40.11 5.36
860 884 1.409661 GGGATTAACCGAACATGGCCT 60.410 52.381 3.32 0.00 40.11 5.19
861 885 2.158726 GGGATTAACCGAACATGGCCTA 60.159 50.000 3.32 0.00 40.11 3.93
862 886 3.547746 GGATTAACCGAACATGGCCTAA 58.452 45.455 3.32 0.00 0.00 2.69
863 887 4.142038 GGATTAACCGAACATGGCCTAAT 58.858 43.478 3.32 0.00 0.00 1.73
864 888 4.023193 GGATTAACCGAACATGGCCTAATG 60.023 45.833 3.32 2.28 0.00 1.90
930 955 4.646945 TGGAACAACCTAATTTTGTGCTGA 59.353 37.500 0.58 0.00 37.26 4.26
936 1008 5.046910 ACCTAATTTTGTGCTGACATTCG 57.953 39.130 0.00 0.00 30.13 3.34
994 1237 4.043200 GTTTCTGTGCAGCGGGCC 62.043 66.667 0.00 0.00 43.89 5.80
995 1238 4.577677 TTTCTGTGCAGCGGGCCA 62.578 61.111 4.39 0.00 43.89 5.36
1028 1271 1.063806 CAAGAAAGCGAGACCGACTG 58.936 55.000 0.00 0.00 38.22 3.51
1209 1464 5.903010 TGGGGAATTAGCTAGATGTTCTACA 59.097 40.000 0.00 0.00 0.00 2.74
1344 1599 4.563337 CAGTGGGCTGTCATTATCAATG 57.437 45.455 0.00 0.00 37.92 2.82
1541 4009 0.673437 CGCTGGAAGGGCAAAGAAAA 59.327 50.000 0.00 0.00 41.12 2.29
1542 4010 1.273327 CGCTGGAAGGGCAAAGAAAAT 59.727 47.619 0.00 0.00 41.12 1.82
1898 4366 4.398358 AGAGCTGATTGATGATGTTGTTGG 59.602 41.667 0.00 0.00 0.00 3.77
1963 4431 7.732222 AAGAGAGAGGATGAGTTTTATCAGT 57.268 36.000 0.00 0.00 31.44 3.41
2055 4523 4.507388 TCAACTTACAAAATGCTTTGCTGC 59.493 37.500 0.00 0.00 44.96 5.25
2266 4734 6.070653 TGGACTATACAAGGTTTACCGATTGT 60.071 38.462 10.30 10.30 42.08 2.71
2404 4872 3.258372 TGATCCTCGTTACAAGCTCAACT 59.742 43.478 0.00 0.00 0.00 3.16
2607 5075 1.269448 GCTCTGCCGGAACAAAAATCA 59.731 47.619 5.05 0.00 0.00 2.57
2887 5355 7.807907 CACATGACAAAAAGGGTACTACATTTC 59.192 37.037 0.00 0.00 0.00 2.17
2933 5401 4.402155 TCTTGGATGGTTTCATATGGTTGC 59.598 41.667 2.13 0.00 32.98 4.17
3083 5554 3.196469 TGATGAAGAAGAGAGCACGGAAT 59.804 43.478 0.00 0.00 0.00 3.01
3154 5625 2.358898 TGCAACTCCAAGCTCTTTTGTC 59.641 45.455 0.00 0.00 0.00 3.18
3164 5635 4.077300 AGCTCTTTTGTCTCATGTGTCA 57.923 40.909 0.00 0.00 0.00 3.58
3202 5673 1.656818 GCGGGCTGTGTTGCACATAT 61.657 55.000 2.25 0.00 43.71 1.78
3227 5698 1.813513 TGCTTAGCTTGTTGGAGAGC 58.186 50.000 5.60 0.00 39.17 4.09
3287 5758 6.067263 TGCTCGTTAAGTTGCTTTTGTTAT 57.933 33.333 0.00 0.00 0.00 1.89
3465 5972 3.780804 TGGTAGCTTTGCTTGGAACTA 57.219 42.857 0.00 0.00 40.44 2.24
3544 6051 2.620115 TCTGCAAACTGCTCTCCTTTTG 59.380 45.455 0.00 0.00 45.31 2.44
3630 6499 5.016173 AGCAAAATTGGTGCCTAATAGACA 58.984 37.500 10.05 0.00 43.27 3.41
3633 6502 5.520376 AAATTGGTGCCTAATAGACATGC 57.480 39.130 0.00 0.00 0.00 4.06
3780 6650 5.130350 GTTTCTATTGTTGCCTGGCCTATA 58.870 41.667 17.53 7.47 0.00 1.31
3823 6693 4.284234 TGACATCAGTGAGAATGTGGAAGA 59.716 41.667 2.61 0.00 0.00 2.87
3892 6762 9.746457 ACTGCAGTATATGATCTCTTATCTGTA 57.254 33.333 20.16 0.00 0.00 2.74
3920 6793 3.441163 TCCATACTTACGCAAAGCTACG 58.559 45.455 2.51 2.51 38.93 3.51
4000 6873 8.500753 AATACCTCTATAAGACGCTCTATCAG 57.499 38.462 0.00 0.00 0.00 2.90
4001 6874 5.871834 ACCTCTATAAGACGCTCTATCAGT 58.128 41.667 0.00 0.00 0.00 3.41
4002 6875 6.300703 ACCTCTATAAGACGCTCTATCAGTT 58.699 40.000 0.00 0.00 0.00 3.16
4003 6876 6.428771 ACCTCTATAAGACGCTCTATCAGTTC 59.571 42.308 0.00 0.00 0.00 3.01
4004 6877 6.428465 CCTCTATAAGACGCTCTATCAGTTCA 59.572 42.308 0.00 0.00 0.00 3.18
4005 6878 7.041030 CCTCTATAAGACGCTCTATCAGTTCAA 60.041 40.741 0.00 0.00 0.00 2.69
4006 6879 8.221965 TCTATAAGACGCTCTATCAGTTCAAA 57.778 34.615 0.00 0.00 0.00 2.69
4007 6880 8.851145 TCTATAAGACGCTCTATCAGTTCAAAT 58.149 33.333 0.00 0.00 0.00 2.32
4008 6881 9.469807 CTATAAGACGCTCTATCAGTTCAAATT 57.530 33.333 0.00 0.00 0.00 1.82
4009 6882 6.414408 AAGACGCTCTATCAGTTCAAATTG 57.586 37.500 0.00 0.00 0.00 2.32
4010 6883 5.724328 AGACGCTCTATCAGTTCAAATTGA 58.276 37.500 0.00 0.00 0.00 2.57
4011 6884 6.166279 AGACGCTCTATCAGTTCAAATTGAA 58.834 36.000 4.03 4.03 33.32 2.69
4026 6899 8.945481 TTCAAATTGAACTGACAAAATGTCAT 57.055 26.923 13.08 0.29 42.70 3.06
4052 6925 7.883391 TGTTTATGAACAAACCCACTAAAGA 57.117 32.000 0.00 0.00 42.54 2.52
4053 6926 8.294954 TGTTTATGAACAAACCCACTAAAGAA 57.705 30.769 0.00 0.00 42.54 2.52
4054 6927 8.410141 TGTTTATGAACAAACCCACTAAAGAAG 58.590 33.333 0.00 0.00 42.54 2.85
4055 6928 8.410912 GTTTATGAACAAACCCACTAAAGAAGT 58.589 33.333 0.00 0.00 35.78 3.01
4056 6929 8.528044 TTATGAACAAACCCACTAAAGAAGTT 57.472 30.769 0.00 0.00 35.76 2.66
4057 6930 6.202516 TGAACAAACCCACTAAAGAAGTTG 57.797 37.500 0.00 0.00 35.76 3.16
4058 6931 5.712917 TGAACAAACCCACTAAAGAAGTTGT 59.287 36.000 0.00 0.00 35.76 3.32
4059 6932 5.830000 ACAAACCCACTAAAGAAGTTGTC 57.170 39.130 0.00 0.00 35.76 3.18
4060 6933 4.643334 ACAAACCCACTAAAGAAGTTGTCC 59.357 41.667 0.00 0.00 35.76 4.02
4061 6934 4.513406 AACCCACTAAAGAAGTTGTCCA 57.487 40.909 0.00 0.00 35.76 4.02
4062 6935 4.724279 ACCCACTAAAGAAGTTGTCCAT 57.276 40.909 0.00 0.00 35.76 3.41
4063 6936 5.836024 ACCCACTAAAGAAGTTGTCCATA 57.164 39.130 0.00 0.00 35.76 2.74
4064 6937 5.557866 ACCCACTAAAGAAGTTGTCCATAC 58.442 41.667 0.00 0.00 35.76 2.39
4065 6938 5.309806 ACCCACTAAAGAAGTTGTCCATACT 59.690 40.000 0.00 0.00 35.76 2.12
4066 6939 5.643777 CCCACTAAAGAAGTTGTCCATACTG 59.356 44.000 0.00 0.00 35.76 2.74
4067 6940 6.464222 CCACTAAAGAAGTTGTCCATACTGA 58.536 40.000 0.00 0.00 35.76 3.41
4068 6941 6.934645 CCACTAAAGAAGTTGTCCATACTGAA 59.065 38.462 0.00 0.00 35.76 3.02
4069 6942 7.095187 CCACTAAAGAAGTTGTCCATACTGAAC 60.095 40.741 0.00 0.00 35.76 3.18
4070 6943 6.935208 ACTAAAGAAGTTGTCCATACTGAACC 59.065 38.462 0.00 0.00 33.35 3.62
4071 6944 3.926616 AGAAGTTGTCCATACTGAACCG 58.073 45.455 0.00 0.00 0.00 4.44
4072 6945 2.762535 AGTTGTCCATACTGAACCGG 57.237 50.000 0.00 0.00 0.00 5.28
4073 6946 1.975680 AGTTGTCCATACTGAACCGGT 59.024 47.619 0.00 0.00 0.00 5.28
4074 6947 2.073816 GTTGTCCATACTGAACCGGTG 58.926 52.381 8.52 0.00 0.00 4.94
4075 6948 1.634960 TGTCCATACTGAACCGGTGA 58.365 50.000 8.52 0.00 0.00 4.02
4076 6949 1.274167 TGTCCATACTGAACCGGTGAC 59.726 52.381 8.52 9.34 0.00 3.67
4077 6950 1.549170 GTCCATACTGAACCGGTGACT 59.451 52.381 8.52 0.00 0.00 3.41
4078 6951 1.548719 TCCATACTGAACCGGTGACTG 59.451 52.381 8.52 12.39 0.00 3.51
4079 6952 1.275291 CCATACTGAACCGGTGACTGT 59.725 52.381 8.52 17.52 0.00 3.55
4080 6953 2.607187 CATACTGAACCGGTGACTGTC 58.393 52.381 21.16 11.12 0.00 3.51
4081 6954 0.963962 TACTGAACCGGTGACTGTCC 59.036 55.000 21.16 0.00 0.00 4.02
4082 6955 1.046472 ACTGAACCGGTGACTGTCCA 61.046 55.000 8.52 0.00 0.00 4.02
4083 6956 0.321671 CTGAACCGGTGACTGTCCAT 59.678 55.000 8.52 0.00 0.00 3.41
4084 6957 0.320374 TGAACCGGTGACTGTCCATC 59.680 55.000 8.52 0.00 0.00 3.51
4085 6958 0.391263 GAACCGGTGACTGTCCATCC 60.391 60.000 8.52 4.74 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.953727 CTCCTCTCCTCTCGCAGATG 59.046 60.000 0.00 0.00 33.89 2.90
1 2 0.178992 CCTCCTCTCCTCTCGCAGAT 60.179 60.000 0.00 0.00 33.89 2.90
2 3 1.225983 CCTCCTCTCCTCTCGCAGA 59.774 63.158 0.00 0.00 0.00 4.26
3 4 1.101049 GTCCTCCTCTCCTCTCGCAG 61.101 65.000 0.00 0.00 0.00 5.18
4 5 1.077357 GTCCTCCTCTCCTCTCGCA 60.077 63.158 0.00 0.00 0.00 5.10
5 6 2.184167 CGTCCTCCTCTCCTCTCGC 61.184 68.421 0.00 0.00 0.00 5.03
6 7 0.812412 GTCGTCCTCCTCTCCTCTCG 60.812 65.000 0.00 0.00 0.00 4.04
7 8 0.464916 GGTCGTCCTCCTCTCCTCTC 60.465 65.000 0.00 0.00 0.00 3.20
8 9 1.610873 GGTCGTCCTCCTCTCCTCT 59.389 63.158 0.00 0.00 0.00 3.69
9 10 1.820481 CGGTCGTCCTCCTCTCCTC 60.820 68.421 0.00 0.00 0.00 3.71
10 11 2.272797 CGGTCGTCCTCCTCTCCT 59.727 66.667 0.00 0.00 0.00 3.69
11 12 2.829458 CCGGTCGTCCTCCTCTCC 60.829 72.222 0.00 0.00 0.00 3.71
12 13 2.829458 CCCGGTCGTCCTCCTCTC 60.829 72.222 0.00 0.00 0.00 3.20
30 31 4.504916 CCTGCTCGCTGGTCGGAG 62.505 72.222 6.66 0.00 39.05 4.63
51 52 3.541713 CTAGCCGTCCTGCTCCCC 61.542 72.222 0.00 0.00 41.68 4.81
52 53 3.541713 CCTAGCCGTCCTGCTCCC 61.542 72.222 0.00 0.00 41.68 4.30
53 54 3.541713 CCCTAGCCGTCCTGCTCC 61.542 72.222 0.00 0.00 41.68 4.70
54 55 4.228567 GCCCTAGCCGTCCTGCTC 62.229 72.222 0.00 0.00 41.68 4.26
57 58 3.905678 CTCGCCCTAGCCGTCCTG 61.906 72.222 1.77 0.00 34.57 3.86
58 59 4.124943 TCTCGCCCTAGCCGTCCT 62.125 66.667 1.77 0.00 34.57 3.85
59 60 3.597728 CTCTCGCCCTAGCCGTCC 61.598 72.222 1.77 0.00 34.57 4.79
60 61 3.597728 CCTCTCGCCCTAGCCGTC 61.598 72.222 1.77 0.00 34.57 4.79
64 65 4.541648 TCCCCCTCTCGCCCTAGC 62.542 72.222 0.00 0.00 0.00 3.42
65 66 2.203567 CTCCCCCTCTCGCCCTAG 60.204 72.222 0.00 0.00 0.00 3.02
66 67 3.834056 CCTCCCCCTCTCGCCCTA 61.834 72.222 0.00 0.00 0.00 3.53
71 72 4.548513 CCCCTCCTCCCCCTCTCG 62.549 77.778 0.00 0.00 0.00 4.04
72 73 4.179599 CCCCCTCCTCCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
73 74 4.761304 TCCCCCTCCTCCCCCTCT 62.761 72.222 0.00 0.00 0.00 3.69
74 75 4.179599 CTCCCCCTCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
77 78 4.179599 CTCCTCCCCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
78 79 4.179599 CCTCCTCCCCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
79 80 4.179599 CCCTCCTCCCCCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
80 81 3.036959 TCCCTCCTCCCCCTCCTC 61.037 72.222 0.00 0.00 0.00 3.71
81 82 3.039526 CTCCCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
82 83 4.179599 CCTCCCTCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
83 84 2.613576 CTTCCTCCCTCCTCCCCCTC 62.614 70.000 0.00 0.00 0.00 4.30
84 85 2.543637 TTCCTCCCTCCTCCCCCT 60.544 66.667 0.00 0.00 0.00 4.79
85 86 2.040359 CTTCCTCCCTCCTCCCCC 60.040 72.222 0.00 0.00 0.00 5.40
86 87 2.040359 CCTTCCTCCCTCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
87 88 2.040359 CCCTTCCTCCCTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
88 89 1.979389 ATCCCCTTCCTCCCTCCTCC 61.979 65.000 0.00 0.00 0.00 4.30
89 90 0.472925 GATCCCCTTCCTCCCTCCTC 60.473 65.000 0.00 0.00 0.00 3.71
90 91 1.635051 GATCCCCTTCCTCCCTCCT 59.365 63.158 0.00 0.00 0.00 3.69
91 92 1.462432 GGATCCCCTTCCTCCCTCC 60.462 68.421 0.00 0.00 32.68 4.30
92 93 0.104197 ATGGATCCCCTTCCTCCCTC 60.104 60.000 9.90 0.00 36.68 4.30
93 94 0.104197 GATGGATCCCCTTCCTCCCT 60.104 60.000 9.90 0.00 36.68 4.20
94 95 0.104197 AGATGGATCCCCTTCCTCCC 60.104 60.000 9.90 0.00 37.33 4.30
95 96 1.063183 CAGATGGATCCCCTTCCTCC 58.937 60.000 9.90 0.00 37.33 4.30
96 97 1.813102 ACAGATGGATCCCCTTCCTC 58.187 55.000 9.90 0.00 37.33 3.71
97 98 2.243221 CAAACAGATGGATCCCCTTCCT 59.757 50.000 9.90 0.00 37.33 3.36
98 99 2.024941 ACAAACAGATGGATCCCCTTCC 60.025 50.000 9.90 0.00 37.33 3.46
99 100 3.282885 GACAAACAGATGGATCCCCTTC 58.717 50.000 9.90 3.77 37.00 3.46
100 101 2.024941 GGACAAACAGATGGATCCCCTT 60.025 50.000 9.90 0.00 0.00 3.95
101 102 1.566231 GGACAAACAGATGGATCCCCT 59.434 52.381 9.90 3.39 0.00 4.79
102 103 1.747206 CGGACAAACAGATGGATCCCC 60.747 57.143 9.90 0.68 0.00 4.81
103 104 1.065418 ACGGACAAACAGATGGATCCC 60.065 52.381 9.90 0.00 0.00 3.85
104 105 2.403252 ACGGACAAACAGATGGATCC 57.597 50.000 4.20 4.20 0.00 3.36
105 106 3.127030 GGAAACGGACAAACAGATGGATC 59.873 47.826 0.00 0.00 0.00 3.36
106 107 3.081804 GGAAACGGACAAACAGATGGAT 58.918 45.455 0.00 0.00 0.00 3.41
107 108 2.105821 AGGAAACGGACAAACAGATGGA 59.894 45.455 0.00 0.00 0.00 3.41
108 109 2.504367 AGGAAACGGACAAACAGATGG 58.496 47.619 0.00 0.00 0.00 3.51
109 110 4.994852 TCTAAGGAAACGGACAAACAGATG 59.005 41.667 0.00 0.00 0.00 2.90
110 111 5.223449 TCTAAGGAAACGGACAAACAGAT 57.777 39.130 0.00 0.00 0.00 2.90
111 112 4.675976 TCTAAGGAAACGGACAAACAGA 57.324 40.909 0.00 0.00 0.00 3.41
112 113 5.744666 TTTCTAAGGAAACGGACAAACAG 57.255 39.130 0.00 0.00 36.63 3.16
113 114 6.151480 ACTTTTTCTAAGGAAACGGACAAACA 59.849 34.615 0.00 0.00 40.63 2.83
114 115 6.558009 ACTTTTTCTAAGGAAACGGACAAAC 58.442 36.000 0.00 0.00 40.63 2.93
115 116 6.762702 ACTTTTTCTAAGGAAACGGACAAA 57.237 33.333 0.00 0.00 40.63 2.83
116 117 6.762702 AACTTTTTCTAAGGAAACGGACAA 57.237 33.333 0.00 0.00 40.63 3.18
117 118 6.762702 AAACTTTTTCTAAGGAAACGGACA 57.237 33.333 0.00 0.00 40.63 4.02
139 140 7.513371 TCGTTTCCTTATTTCAGGCTAAAAA 57.487 32.000 0.00 0.00 33.35 1.94
140 141 7.513371 TTCGTTTCCTTATTTCAGGCTAAAA 57.487 32.000 0.00 0.00 33.35 1.52
141 142 7.513371 TTTCGTTTCCTTATTTCAGGCTAAA 57.487 32.000 0.00 0.00 33.35 1.85
142 143 7.696992 ATTTCGTTTCCTTATTTCAGGCTAA 57.303 32.000 0.00 0.00 33.35 3.09
143 144 7.392113 TGAATTTCGTTTCCTTATTTCAGGCTA 59.608 33.333 0.00 0.00 33.35 3.93
144 145 6.208599 TGAATTTCGTTTCCTTATTTCAGGCT 59.791 34.615 0.00 0.00 33.35 4.58
145 146 6.386654 TGAATTTCGTTTCCTTATTTCAGGC 58.613 36.000 0.00 0.00 33.35 4.85
146 147 8.810652 TTTGAATTTCGTTTCCTTATTTCAGG 57.189 30.769 0.00 0.00 34.86 3.86
148 149 9.587772 TGTTTTGAATTTCGTTTCCTTATTTCA 57.412 25.926 0.00 0.00 0.00 2.69
150 151 9.594478 ACTGTTTTGAATTTCGTTTCCTTATTT 57.406 25.926 0.00 0.00 0.00 1.40
151 152 9.030301 CACTGTTTTGAATTTCGTTTCCTTATT 57.970 29.630 0.00 0.00 0.00 1.40
152 153 8.194769 ACACTGTTTTGAATTTCGTTTCCTTAT 58.805 29.630 0.00 0.00 0.00 1.73
153 154 7.540299 ACACTGTTTTGAATTTCGTTTCCTTA 58.460 30.769 0.00 0.00 0.00 2.69
154 155 6.394809 ACACTGTTTTGAATTTCGTTTCCTT 58.605 32.000 0.00 0.00 0.00 3.36
155 156 5.961272 ACACTGTTTTGAATTTCGTTTCCT 58.039 33.333 0.00 0.00 0.00 3.36
156 157 6.641176 AACACTGTTTTGAATTTCGTTTCC 57.359 33.333 0.00 0.00 0.00 3.13
174 175 9.981114 CCTTGAAACAATTCCTTATTTAACACT 57.019 29.630 0.00 0.00 34.49 3.55
175 176 8.708742 GCCTTGAAACAATTCCTTATTTAACAC 58.291 33.333 0.00 0.00 34.49 3.32
176 177 8.646900 AGCCTTGAAACAATTCCTTATTTAACA 58.353 29.630 0.00 0.00 34.49 2.41
177 178 9.489084 AAGCCTTGAAACAATTCCTTATTTAAC 57.511 29.630 0.00 0.00 34.49 2.01
181 182 9.710900 CTTAAAGCCTTGAAACAATTCCTTATT 57.289 29.630 0.00 0.00 34.49 1.40
182 183 7.819415 GCTTAAAGCCTTGAAACAATTCCTTAT 59.181 33.333 0.00 0.00 34.48 1.73
183 184 7.015195 AGCTTAAAGCCTTGAAACAATTCCTTA 59.985 33.333 0.00 0.00 43.77 2.69
184 185 5.991606 GCTTAAAGCCTTGAAACAATTCCTT 59.008 36.000 0.00 0.00 34.48 3.36
185 186 5.305386 AGCTTAAAGCCTTGAAACAATTCCT 59.695 36.000 0.00 0.00 43.77 3.36
186 187 5.406477 CAGCTTAAAGCCTTGAAACAATTCC 59.594 40.000 0.00 0.00 43.77 3.01
187 188 5.107337 GCAGCTTAAAGCCTTGAAACAATTC 60.107 40.000 0.00 0.00 43.77 2.17
188 189 4.751600 GCAGCTTAAAGCCTTGAAACAATT 59.248 37.500 0.00 0.00 43.77 2.32
189 190 4.039609 AGCAGCTTAAAGCCTTGAAACAAT 59.960 37.500 0.00 0.00 43.77 2.71
190 191 3.384467 AGCAGCTTAAAGCCTTGAAACAA 59.616 39.130 0.00 0.00 43.77 2.83
191 192 2.958355 AGCAGCTTAAAGCCTTGAAACA 59.042 40.909 0.00 0.00 43.77 2.83
192 193 3.243535 ACAGCAGCTTAAAGCCTTGAAAC 60.244 43.478 0.00 0.00 43.77 2.78
193 194 2.958355 ACAGCAGCTTAAAGCCTTGAAA 59.042 40.909 0.00 0.00 43.77 2.69
194 195 2.586425 ACAGCAGCTTAAAGCCTTGAA 58.414 42.857 0.00 0.00 43.77 2.69
195 196 2.276732 ACAGCAGCTTAAAGCCTTGA 57.723 45.000 0.00 0.00 43.77 3.02
196 197 3.054878 CAAACAGCAGCTTAAAGCCTTG 58.945 45.455 0.00 0.00 43.77 3.61
255 261 2.882137 CAGGGGTTTAAAGCGAGTCAAA 59.118 45.455 11.05 0.00 0.00 2.69
258 264 2.180432 ACAGGGGTTTAAAGCGAGTC 57.820 50.000 11.05 1.83 0.00 3.36
260 266 3.638484 CAAAACAGGGGTTTAAAGCGAG 58.362 45.455 11.05 6.15 46.20 5.03
261 267 2.223852 GCAAAACAGGGGTTTAAAGCGA 60.224 45.455 11.05 0.00 46.20 4.93
262 268 2.131972 GCAAAACAGGGGTTTAAAGCG 58.868 47.619 11.05 0.77 46.20 4.68
263 269 3.130633 CTGCAAAACAGGGGTTTAAAGC 58.869 45.455 8.92 8.92 46.20 3.51
264 270 3.130633 GCTGCAAAACAGGGGTTTAAAG 58.869 45.455 0.00 0.00 46.20 1.85
265 271 3.186702 GCTGCAAAACAGGGGTTTAAA 57.813 42.857 0.00 0.00 46.20 1.52
277 295 0.819259 AGTGAAGAGGCGCTGCAAAA 60.819 50.000 7.64 0.00 32.64 2.44
289 307 4.772100 GGATGAAATGGGGAAAAGTGAAGA 59.228 41.667 0.00 0.00 0.00 2.87
326 344 1.067213 CGCCGGTTTGGGATGATTTTT 60.067 47.619 1.90 0.00 38.63 1.94
327 345 0.530288 CGCCGGTTTGGGATGATTTT 59.470 50.000 1.90 0.00 38.63 1.82
328 346 1.319614 CCGCCGGTTTGGGATGATTT 61.320 55.000 1.90 0.00 38.63 2.17
329 347 1.752694 CCGCCGGTTTGGGATGATT 60.753 57.895 1.90 0.00 38.63 2.57
330 348 2.124320 CCGCCGGTTTGGGATGAT 60.124 61.111 1.90 0.00 38.63 2.45
494 518 0.790814 GGGACAGAAGAAAACGCGAG 59.209 55.000 15.93 0.00 0.00 5.03
555 579 2.777832 AGGGTTCTGCTTCATCTGAC 57.222 50.000 0.00 0.00 0.00 3.51
567 591 4.864726 ACACCGTAGATACTTAGGGTTCT 58.135 43.478 0.00 0.00 39.19 3.01
576 600 5.012354 TCCAAGGAAAAACACCGTAGATACT 59.988 40.000 0.00 0.00 0.00 2.12
622 646 2.151202 GACGCCAATTTTCCACTCAGA 58.849 47.619 0.00 0.00 0.00 3.27
722 746 1.524008 CTCCCAAACCGAACAAGGCC 61.524 60.000 0.00 0.00 33.69 5.19
723 747 1.524008 CCTCCCAAACCGAACAAGGC 61.524 60.000 0.00 0.00 33.69 4.35
724 748 0.893727 CCCTCCCAAACCGAACAAGG 60.894 60.000 0.00 0.00 37.30 3.61
725 749 0.179001 ACCCTCCCAAACCGAACAAG 60.179 55.000 0.00 0.00 0.00 3.16
726 750 0.259356 AACCCTCCCAAACCGAACAA 59.741 50.000 0.00 0.00 0.00 2.83
727 751 0.259356 AAACCCTCCCAAACCGAACA 59.741 50.000 0.00 0.00 0.00 3.18
728 752 0.671796 CAAACCCTCCCAAACCGAAC 59.328 55.000 0.00 0.00 0.00 3.95
729 753 0.551879 TCAAACCCTCCCAAACCGAA 59.448 50.000 0.00 0.00 0.00 4.30
730 754 0.551879 TTCAAACCCTCCCAAACCGA 59.448 50.000 0.00 0.00 0.00 4.69
731 755 0.958822 CTTCAAACCCTCCCAAACCG 59.041 55.000 0.00 0.00 0.00 4.44
732 756 2.239400 CTCTTCAAACCCTCCCAAACC 58.761 52.381 0.00 0.00 0.00 3.27
733 757 2.239400 CCTCTTCAAACCCTCCCAAAC 58.761 52.381 0.00 0.00 0.00 2.93
734 758 1.856920 ACCTCTTCAAACCCTCCCAAA 59.143 47.619 0.00 0.00 0.00 3.28
735 759 1.529744 ACCTCTTCAAACCCTCCCAA 58.470 50.000 0.00 0.00 0.00 4.12
736 760 1.529744 AACCTCTTCAAACCCTCCCA 58.470 50.000 0.00 0.00 0.00 4.37
737 761 2.158519 TCAAACCTCTTCAAACCCTCCC 60.159 50.000 0.00 0.00 0.00 4.30
738 762 3.223674 TCAAACCTCTTCAAACCCTCC 57.776 47.619 0.00 0.00 0.00 4.30
739 763 4.038042 CCTTTCAAACCTCTTCAAACCCTC 59.962 45.833 0.00 0.00 0.00 4.30
740 764 3.960755 CCTTTCAAACCTCTTCAAACCCT 59.039 43.478 0.00 0.00 0.00 4.34
741 765 3.069586 CCCTTTCAAACCTCTTCAAACCC 59.930 47.826 0.00 0.00 0.00 4.11
742 766 3.958147 TCCCTTTCAAACCTCTTCAAACC 59.042 43.478 0.00 0.00 0.00 3.27
743 767 5.791336 ATCCCTTTCAAACCTCTTCAAAC 57.209 39.130 0.00 0.00 0.00 2.93
744 768 5.896678 TCAATCCCTTTCAAACCTCTTCAAA 59.103 36.000 0.00 0.00 0.00 2.69
745 769 5.454062 TCAATCCCTTTCAAACCTCTTCAA 58.546 37.500 0.00 0.00 0.00 2.69
746 770 5.060427 TCAATCCCTTTCAAACCTCTTCA 57.940 39.130 0.00 0.00 0.00 3.02
747 771 5.047731 CCTTCAATCCCTTTCAAACCTCTTC 60.048 44.000 0.00 0.00 0.00 2.87
748 772 4.835056 CCTTCAATCCCTTTCAAACCTCTT 59.165 41.667 0.00 0.00 0.00 2.85
749 773 4.411013 CCTTCAATCCCTTTCAAACCTCT 58.589 43.478 0.00 0.00 0.00 3.69
750 774 3.511540 CCCTTCAATCCCTTTCAAACCTC 59.488 47.826 0.00 0.00 0.00 3.85
751 775 3.510459 CCCTTCAATCCCTTTCAAACCT 58.490 45.455 0.00 0.00 0.00 3.50
752 776 2.567169 CCCCTTCAATCCCTTTCAAACC 59.433 50.000 0.00 0.00 0.00 3.27
753 777 3.506398 TCCCCTTCAATCCCTTTCAAAC 58.494 45.455 0.00 0.00 0.00 2.93
754 778 3.913370 TCCCCTTCAATCCCTTTCAAA 57.087 42.857 0.00 0.00 0.00 2.69
755 779 4.418395 AATCCCCTTCAATCCCTTTCAA 57.582 40.909 0.00 0.00 0.00 2.69
756 780 5.544441 TTAATCCCCTTCAATCCCTTTCA 57.456 39.130 0.00 0.00 0.00 2.69
757 781 6.042093 GGATTTAATCCCCTTCAATCCCTTTC 59.958 42.308 12.74 0.00 43.88 2.62
758 782 5.905331 GGATTTAATCCCCTTCAATCCCTTT 59.095 40.000 12.74 0.00 43.88 3.11
759 783 5.467738 GGATTTAATCCCCTTCAATCCCTT 58.532 41.667 12.74 0.00 43.88 3.95
760 784 5.079998 GGATTTAATCCCCTTCAATCCCT 57.920 43.478 12.74 0.00 43.88 4.20
772 796 6.036577 TTTGACTTGCAAGGGATTTAATCC 57.963 37.500 29.18 15.22 39.39 3.01
773 797 7.278646 GGATTTTGACTTGCAAGGGATTTAATC 59.721 37.037 29.18 23.91 37.87 1.75
774 798 7.038088 AGGATTTTGACTTGCAAGGGATTTAAT 60.038 33.333 29.18 18.73 37.87 1.40
775 799 6.269769 AGGATTTTGACTTGCAAGGGATTTAA 59.730 34.615 29.18 15.31 37.87 1.52
776 800 5.779771 AGGATTTTGACTTGCAAGGGATTTA 59.220 36.000 29.18 11.01 37.87 1.40
777 801 4.594491 AGGATTTTGACTTGCAAGGGATTT 59.406 37.500 29.18 8.87 37.87 2.17
778 802 4.162651 AGGATTTTGACTTGCAAGGGATT 58.837 39.130 29.18 9.27 37.87 3.01
779 803 3.782992 AGGATTTTGACTTGCAAGGGAT 58.217 40.909 29.18 14.92 37.87 3.85
780 804 3.243359 AGGATTTTGACTTGCAAGGGA 57.757 42.857 29.18 13.09 37.87 4.20
781 805 3.575687 AGAAGGATTTTGACTTGCAAGGG 59.424 43.478 29.18 7.81 37.87 3.95
782 806 4.279169 TGAGAAGGATTTTGACTTGCAAGG 59.721 41.667 29.18 12.28 37.87 3.61
783 807 5.443185 TGAGAAGGATTTTGACTTGCAAG 57.557 39.130 24.84 24.84 37.87 4.01
784 808 5.850557 TTGAGAAGGATTTTGACTTGCAA 57.149 34.783 0.00 0.00 33.88 4.08
785 809 5.451798 GGTTTGAGAAGGATTTTGACTTGCA 60.452 40.000 0.00 0.00 0.00 4.08
786 810 4.984785 GGTTTGAGAAGGATTTTGACTTGC 59.015 41.667 0.00 0.00 0.00 4.01
787 811 6.396829 AGGTTTGAGAAGGATTTTGACTTG 57.603 37.500 0.00 0.00 0.00 3.16
788 812 5.536538 GGAGGTTTGAGAAGGATTTTGACTT 59.463 40.000 0.00 0.00 0.00 3.01
789 813 5.073428 GGAGGTTTGAGAAGGATTTTGACT 58.927 41.667 0.00 0.00 0.00 3.41
790 814 4.218635 GGGAGGTTTGAGAAGGATTTTGAC 59.781 45.833 0.00 0.00 0.00 3.18
791 815 4.407365 GGGAGGTTTGAGAAGGATTTTGA 58.593 43.478 0.00 0.00 0.00 2.69
792 816 3.511540 GGGGAGGTTTGAGAAGGATTTTG 59.488 47.826 0.00 0.00 0.00 2.44
793 817 3.142028 TGGGGAGGTTTGAGAAGGATTTT 59.858 43.478 0.00 0.00 0.00 1.82
794 818 2.721906 TGGGGAGGTTTGAGAAGGATTT 59.278 45.455 0.00 0.00 0.00 2.17
795 819 2.358258 TGGGGAGGTTTGAGAAGGATT 58.642 47.619 0.00 0.00 0.00 3.01
796 820 2.059756 TGGGGAGGTTTGAGAAGGAT 57.940 50.000 0.00 0.00 0.00 3.24
797 821 1.827792 TTGGGGAGGTTTGAGAAGGA 58.172 50.000 0.00 0.00 0.00 3.36
798 822 2.621668 GGATTGGGGAGGTTTGAGAAGG 60.622 54.545 0.00 0.00 0.00 3.46
799 823 2.621668 GGGATTGGGGAGGTTTGAGAAG 60.622 54.545 0.00 0.00 0.00 2.85
800 824 1.357761 GGGATTGGGGAGGTTTGAGAA 59.642 52.381 0.00 0.00 0.00 2.87
801 825 0.999712 GGGATTGGGGAGGTTTGAGA 59.000 55.000 0.00 0.00 0.00 3.27
802 826 0.033109 GGGGATTGGGGAGGTTTGAG 60.033 60.000 0.00 0.00 0.00 3.02
803 827 0.479589 AGGGGATTGGGGAGGTTTGA 60.480 55.000 0.00 0.00 0.00 2.69
804 828 0.413434 AAGGGGATTGGGGAGGTTTG 59.587 55.000 0.00 0.00 0.00 2.93
805 829 0.710588 GAAGGGGATTGGGGAGGTTT 59.289 55.000 0.00 0.00 0.00 3.27
806 830 0.479589 TGAAGGGGATTGGGGAGGTT 60.480 55.000 0.00 0.00 0.00 3.50
807 831 0.479589 TTGAAGGGGATTGGGGAGGT 60.480 55.000 0.00 0.00 0.00 3.85
808 832 0.936691 ATTGAAGGGGATTGGGGAGG 59.063 55.000 0.00 0.00 0.00 4.30
809 833 1.133356 GGATTGAAGGGGATTGGGGAG 60.133 57.143 0.00 0.00 0.00 4.30
810 834 0.933700 GGATTGAAGGGGATTGGGGA 59.066 55.000 0.00 0.00 0.00 4.81
811 835 0.105504 GGGATTGAAGGGGATTGGGG 60.106 60.000 0.00 0.00 0.00 4.96
812 836 0.636101 TGGGATTGAAGGGGATTGGG 59.364 55.000 0.00 0.00 0.00 4.12
813 837 1.288932 ACTGGGATTGAAGGGGATTGG 59.711 52.381 0.00 0.00 0.00 3.16
814 838 2.381911 CACTGGGATTGAAGGGGATTG 58.618 52.381 0.00 0.00 0.00 2.67
815 839 1.288932 CCACTGGGATTGAAGGGGATT 59.711 52.381 0.00 0.00 39.56 3.01
816 840 0.929244 CCACTGGGATTGAAGGGGAT 59.071 55.000 0.00 0.00 39.56 3.85
817 841 1.863155 GCCACTGGGATTGAAGGGGA 61.863 60.000 0.00 0.00 39.56 4.81
818 842 1.380380 GCCACTGGGATTGAAGGGG 60.380 63.158 0.00 0.00 40.22 4.79
819 843 0.251742 TTGCCACTGGGATTGAAGGG 60.252 55.000 0.00 0.00 35.59 3.95
820 844 1.180029 CTTGCCACTGGGATTGAAGG 58.820 55.000 0.00 0.00 35.59 3.46
821 845 1.180029 CCTTGCCACTGGGATTGAAG 58.820 55.000 0.00 0.00 35.59 3.02
822 846 0.251742 CCCTTGCCACTGGGATTGAA 60.252 55.000 0.00 0.00 46.15 2.69
823 847 1.383799 CCCTTGCCACTGGGATTGA 59.616 57.895 0.00 0.00 46.15 2.57
824 848 1.683365 CCCCTTGCCACTGGGATTG 60.683 63.158 3.68 0.00 46.15 2.67
825 849 1.856873 TCCCCTTGCCACTGGGATT 60.857 57.895 3.68 0.00 46.15 3.01
826 850 2.204291 TCCCCTTGCCACTGGGAT 60.204 61.111 3.68 0.00 46.15 3.85
828 852 0.334676 TTAATCCCCTTGCCACTGGG 59.665 55.000 0.00 0.00 42.98 4.45
829 853 1.474330 GTTAATCCCCTTGCCACTGG 58.526 55.000 0.00 0.00 0.00 4.00
830 854 1.474330 GGTTAATCCCCTTGCCACTG 58.526 55.000 0.00 0.00 0.00 3.66
831 855 0.034477 CGGTTAATCCCCTTGCCACT 60.034 55.000 0.00 0.00 0.00 4.00
832 856 0.034863 TCGGTTAATCCCCTTGCCAC 60.035 55.000 0.00 0.00 0.00 5.01
833 857 0.699399 TTCGGTTAATCCCCTTGCCA 59.301 50.000 0.00 0.00 0.00 4.92
834 858 1.100510 GTTCGGTTAATCCCCTTGCC 58.899 55.000 0.00 0.00 0.00 4.52
835 859 1.828979 TGTTCGGTTAATCCCCTTGC 58.171 50.000 0.00 0.00 0.00 4.01
836 860 2.687935 CCATGTTCGGTTAATCCCCTTG 59.312 50.000 0.00 0.00 0.00 3.61
837 861 2.948600 GCCATGTTCGGTTAATCCCCTT 60.949 50.000 0.00 0.00 0.00 3.95
838 862 1.409661 GCCATGTTCGGTTAATCCCCT 60.410 52.381 0.00 0.00 0.00 4.79
839 863 1.029681 GCCATGTTCGGTTAATCCCC 58.970 55.000 0.00 0.00 0.00 4.81
840 864 1.029681 GGCCATGTTCGGTTAATCCC 58.970 55.000 0.00 0.00 0.00 3.85
841 865 2.052782 AGGCCATGTTCGGTTAATCC 57.947 50.000 5.01 0.00 0.00 3.01
842 866 4.023193 CCATTAGGCCATGTTCGGTTAATC 60.023 45.833 5.01 0.00 0.00 1.75
843 867 3.888930 CCATTAGGCCATGTTCGGTTAAT 59.111 43.478 5.01 0.00 0.00 1.40
844 868 3.283751 CCATTAGGCCATGTTCGGTTAA 58.716 45.455 5.01 0.00 0.00 2.01
845 869 2.422235 CCCATTAGGCCATGTTCGGTTA 60.422 50.000 5.01 0.00 0.00 2.85
846 870 1.684869 CCCATTAGGCCATGTTCGGTT 60.685 52.381 5.01 0.00 0.00 4.44
847 871 0.106719 CCCATTAGGCCATGTTCGGT 60.107 55.000 5.01 0.00 0.00 4.69
848 872 0.823356 CCCCATTAGGCCATGTTCGG 60.823 60.000 5.01 0.00 0.00 4.30
849 873 0.823356 CCCCCATTAGGCCATGTTCG 60.823 60.000 5.01 0.00 0.00 3.95
850 874 0.555769 TCCCCCATTAGGCCATGTTC 59.444 55.000 5.01 0.00 0.00 3.18
851 875 0.261696 GTCCCCCATTAGGCCATGTT 59.738 55.000 5.01 0.00 0.00 2.71
852 876 1.655114 GGTCCCCCATTAGGCCATGT 61.655 60.000 5.01 0.00 0.00 3.21
853 877 1.153756 GGTCCCCCATTAGGCCATG 59.846 63.158 5.01 0.00 0.00 3.66
854 878 1.007445 AGGTCCCCCATTAGGCCAT 59.993 57.895 5.01 0.00 0.00 4.40
855 879 2.006415 CAGGTCCCCCATTAGGCCA 61.006 63.158 5.01 0.00 0.00 5.36
856 880 1.286305 TTCAGGTCCCCCATTAGGCC 61.286 60.000 0.00 0.00 0.00 5.19
857 881 0.106669 GTTCAGGTCCCCCATTAGGC 60.107 60.000 0.00 0.00 0.00 3.93
858 882 0.551396 GGTTCAGGTCCCCCATTAGG 59.449 60.000 0.00 0.00 0.00 2.69
859 883 0.551396 GGGTTCAGGTCCCCCATTAG 59.449 60.000 0.00 0.00 39.08 1.73
860 884 1.276140 CGGGTTCAGGTCCCCCATTA 61.276 60.000 2.21 0.00 41.78 1.90
861 885 2.612493 CGGGTTCAGGTCCCCCATT 61.612 63.158 2.21 0.00 41.78 3.16
862 886 3.015145 CGGGTTCAGGTCCCCCAT 61.015 66.667 2.21 0.00 41.78 4.00
863 887 4.585216 ACGGGTTCAGGTCCCCCA 62.585 66.667 2.21 0.00 41.78 4.96
864 888 4.029809 CACGGGTTCAGGTCCCCC 62.030 72.222 0.00 0.00 41.78 5.40
930 955 5.303747 TGTTTGTTCAACAAGACGAATGT 57.696 34.783 2.58 0.00 42.76 2.71
994 1237 3.713858 TTCTTGTGTTGACATGGCTTG 57.286 42.857 0.00 0.00 30.13 4.01
995 1238 3.491447 GCTTTCTTGTGTTGACATGGCTT 60.491 43.478 0.00 0.00 30.13 4.35
1193 1448 4.649218 TGCCACATGTAGAACATCTAGCTA 59.351 41.667 0.00 0.00 36.53 3.32
1209 1464 2.366266 AGTCATGCTTGTTTTGCCACAT 59.634 40.909 0.00 0.00 0.00 3.21
1541 4009 8.424918 AGATATCATCGTTGTAGTTTTCTCCAT 58.575 33.333 5.32 0.00 0.00 3.41
1542 4010 7.782049 AGATATCATCGTTGTAGTTTTCTCCA 58.218 34.615 5.32 0.00 0.00 3.86
1898 4366 2.945008 TGAATTCCATGACGGATCTTGC 59.055 45.455 2.27 0.00 45.80 4.01
1905 4373 6.459066 AGTGATATAGTGAATTCCATGACGG 58.541 40.000 2.27 0.00 0.00 4.79
1963 4431 7.939782 TCAAGATGACAAATTTCTTTAGCACA 58.060 30.769 0.00 0.00 0.00 4.57
2055 4523 1.070577 GCATCCTTGTAATACAGCGCG 60.071 52.381 0.00 0.00 0.00 6.86
2266 4734 2.151502 TGCCCTTTTGTCACTCCAAA 57.848 45.000 0.00 0.00 32.70 3.28
2346 4814 4.150897 AGCCAAAACAAGACTGTACTCA 57.849 40.909 0.00 0.00 33.45 3.41
2560 5028 2.315925 TCGAACAGATCATCCTTGGC 57.684 50.000 0.00 0.00 0.00 4.52
2607 5075 6.378280 GTGATTCCAAATACCAATCCAGTTCT 59.622 38.462 0.00 0.00 0.00 3.01
3083 5554 8.294577 GCAATAAGCATCATTGTCATCAGATTA 58.705 33.333 6.75 0.00 44.79 1.75
3154 5625 2.007608 CTGACTGCCATGACACATGAG 58.992 52.381 12.46 0.00 0.00 2.90
3164 5635 2.157738 GCAAAAGAGACTGACTGCCAT 58.842 47.619 0.00 0.00 0.00 4.40
3202 5673 3.020274 TCCAACAAGCTAAGCAACACAA 58.980 40.909 0.00 0.00 0.00 3.33
3898 6771 4.049186 CGTAGCTTTGCGTAAGTATGGAT 58.951 43.478 0.00 0.00 41.68 3.41
3905 6778 3.781341 TTGTTCGTAGCTTTGCGTAAG 57.219 42.857 0.00 0.00 36.90 2.34
3920 6793 9.577110 TTTTCTTATCATGATCATGCTTTGTTC 57.423 29.630 27.68 0.00 38.65 3.18
4018 6891 9.651913 GGGTTTGTTCATAAACATATGACATTT 57.348 29.630 10.38 2.37 44.59 2.32
4019 6892 8.811017 TGGGTTTGTTCATAAACATATGACATT 58.189 29.630 10.38 4.24 44.59 2.71
4020 6893 8.250332 GTGGGTTTGTTCATAAACATATGACAT 58.750 33.333 10.38 0.00 44.59 3.06
4021 6894 7.450014 AGTGGGTTTGTTCATAAACATATGACA 59.550 33.333 10.38 0.00 44.59 3.58
4022 6895 7.826690 AGTGGGTTTGTTCATAAACATATGAC 58.173 34.615 10.38 0.00 44.59 3.06
4023 6896 9.521841 TTAGTGGGTTTGTTCATAAACATATGA 57.478 29.630 10.38 0.00 44.59 2.15
4026 6899 9.575868 TCTTTAGTGGGTTTGTTCATAAACATA 57.424 29.630 0.00 0.00 44.59 2.29
4027 6900 8.472007 TCTTTAGTGGGTTTGTTCATAAACAT 57.528 30.769 0.00 0.00 44.59 2.71
4028 6901 7.883391 TCTTTAGTGGGTTTGTTCATAAACA 57.117 32.000 0.00 0.00 43.58 2.83
4029 6902 8.410912 ACTTCTTTAGTGGGTTTGTTCATAAAC 58.589 33.333 0.00 0.00 36.50 2.01
4030 6903 8.528044 ACTTCTTTAGTGGGTTTGTTCATAAA 57.472 30.769 0.00 0.00 35.19 1.40
4031 6904 8.410141 CAACTTCTTTAGTGGGTTTGTTCATAA 58.590 33.333 0.00 0.00 37.12 1.90
4032 6905 7.558444 ACAACTTCTTTAGTGGGTTTGTTCATA 59.442 33.333 0.00 0.00 37.12 2.15
4033 6906 6.379988 ACAACTTCTTTAGTGGGTTTGTTCAT 59.620 34.615 0.00 0.00 37.12 2.57
4034 6907 5.712917 ACAACTTCTTTAGTGGGTTTGTTCA 59.287 36.000 0.00 0.00 37.12 3.18
4035 6908 6.203808 ACAACTTCTTTAGTGGGTTTGTTC 57.796 37.500 0.00 0.00 37.12 3.18
4036 6909 5.126545 GGACAACTTCTTTAGTGGGTTTGTT 59.873 40.000 0.00 0.00 37.12 2.83
4037 6910 4.643334 GGACAACTTCTTTAGTGGGTTTGT 59.357 41.667 0.00 0.00 37.12 2.83
4038 6911 4.642885 TGGACAACTTCTTTAGTGGGTTTG 59.357 41.667 0.00 0.00 37.12 2.93
4039 6912 4.862371 TGGACAACTTCTTTAGTGGGTTT 58.138 39.130 0.00 0.00 37.12 3.27
4040 6913 4.513406 TGGACAACTTCTTTAGTGGGTT 57.487 40.909 0.00 0.00 37.12 4.11
4041 6914 4.724279 ATGGACAACTTCTTTAGTGGGT 57.276 40.909 0.00 0.00 37.12 4.51
4042 6915 5.643777 CAGTATGGACAACTTCTTTAGTGGG 59.356 44.000 0.00 0.00 37.12 4.61
4043 6916 6.464222 TCAGTATGGACAACTTCTTTAGTGG 58.536 40.000 0.00 0.00 34.81 4.00
4044 6917 7.797819 GTTCAGTATGGACAACTTCTTTAGTG 58.202 38.462 0.00 0.00 46.52 2.74
4045 6918 7.964604 GTTCAGTATGGACAACTTCTTTAGT 57.035 36.000 0.00 0.00 46.52 2.24
4057 6930 1.549170 AGTCACCGGTTCAGTATGGAC 59.451 52.381 2.97 6.87 46.57 4.02
4058 6931 1.548719 CAGTCACCGGTTCAGTATGGA 59.451 52.381 2.97 0.00 36.16 3.41
4059 6932 1.275291 ACAGTCACCGGTTCAGTATGG 59.725 52.381 2.97 0.00 36.16 2.74
4060 6933 2.607187 GACAGTCACCGGTTCAGTATG 58.393 52.381 2.97 0.44 37.54 2.39
4061 6934 1.549170 GGACAGTCACCGGTTCAGTAT 59.451 52.381 2.97 0.00 0.00 2.12
4062 6935 0.963962 GGACAGTCACCGGTTCAGTA 59.036 55.000 2.97 0.00 0.00 2.74
4063 6936 1.046472 TGGACAGTCACCGGTTCAGT 61.046 55.000 2.97 4.07 0.00 3.41
4064 6937 0.321671 ATGGACAGTCACCGGTTCAG 59.678 55.000 2.97 0.22 27.21 3.02
4065 6938 0.320374 GATGGACAGTCACCGGTTCA 59.680 55.000 2.97 0.00 0.00 3.18
4066 6939 0.391263 GGATGGACAGTCACCGGTTC 60.391 60.000 2.97 0.00 0.00 3.62
4067 6940 1.677552 GGATGGACAGTCACCGGTT 59.322 57.895 2.97 0.00 0.00 4.44
4068 6941 3.388841 GGATGGACAGTCACCGGT 58.611 61.111 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.