>input_sequence_38128
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------------------------------------------ATGTCAACACAAGAAAGCGAGACCGACTGTCAGGTTCT
CCTTGGTGATGAGGCGGAGGAGGTTGAAGAGGATGATGAGTGGGGAGAGGAGGAGGA------------ATATGAGTCAA
GTGGGTCTGAACCAATTCGAAAGCGTCAGAAAGCATCTGACATTTGGGAAGGCTTCATGATTCTTAAGCGCACAAGCAGT
GGGGAATTAGCTAGATGTTCTACATGTGGCAAAACAAGCATGACTTCTCTCTTGACATCCGCACGTTCAGTCGACAAGCC
CCAGGTTGGTCCTGATTATGCTGCTGCTAGAAGATCATTAGCCATGTTTATTATCAACAGTGGGCTGTCATTATCAATGG
TTGAAGAACCCAGTCTTCAGATGTTTATTAGAGCTG--------------------------------------------
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---------TTAATCCGCTGTCTGAAAATATAAACTCTTGTCGCCGTTCTGTTTTAGACAGAGATGTCATGGCTCTTTAT
GGAAGGGAAAAGGATTCTTTGAAATTTATCTTGTCTGAAGCACCTGGGAGAATCAGTTTCGCTATTGATCGCTGGAAGGG
CAAAGAAAATGGAGAAAACTACAACGATGATATCTATATGTGCATCGTGGCTTGCTTTATTGATGTTGATTGGAATTTGC
AGAGAAGAGTAGTGGCTTTCAAACACTTGGCTTTTCCTGACGATGTCGTGTCTGTCGCTGATACTGTAGCATCCTGTTTT
ACTGAATTTGAGGTTGATCAGAAGCTAATGTGCATAACTCTGGATAATGCATTAGATGATGCTTCTGTGGATAATTCAGT
TAAGACGATTGTGCTAGATAAGGACAAATTGTTGTGTGATGGTGAATTATGTCAAATGCATTGTTGCACAGAAATCTTGA
ATTCAGTTGTGCAAGCTGGTCTAGAGCTGATTGATGATGTTGTTGGCAAGATCCGTCATGGAATTCACTATATCACTTAC
TCTAAAAAGAGAGAGGATGAGTTTTATCAGTGTGCTAAAGAAATTTGTCATCTTGATGTTGCAATGAAGTTACGTGCTGA
TCTGGTTATTACTTGGGACTCAACTTACAAAATGCTTTGCTGCGCGCTGTATTACAAGGATGCTCTGAAGCATTTTGCAT
CAAAACATCAGACCTTCTTGTCTAATTTCCATCTTTGTGATGAAGAATGGAACAGGGTGGCAACAATGGAAAAGTTCATA
AAGCCACTCTATGACATCACATGCACTTTCTTAACCACAAAGCACAAAACTGCCAGTTTATACTTTCTTGGACTATACAA
GGTTTACCGATTGTTTGGAGTGACAAAAGGGCAAGAAAACTTCATGGCTGGTATGGTGAAAGACATGACGGCTAAGTTCG
ACAAGTATTGGTCTGAGTACAGTCTTGTTTTGGCTTGTGCGGCTGTTCTTGATCCTCGTTACAAGCTCAACTTAGTCAGC
TTTTGTTTTAAGAAGATCTATGGTGATGTTGGTGCTAGCCAGTATACTGACAGAGTTGTCGCATTGCTCCACAGACTGTT
CGCTCAATATGAGAAGTCGCCGTCTTCTTGTTCAGCTGCAGTTGGGAGTGGTGTTACTGAATACCACGCCAAGGATGATC
TGTTCGATGGTTTTGCTCTGCCGGAACAAAAATCAGAACTGGATTGGTATTTGGAATCACCAGCTATGCATCTAAACACT
GATCTGGATATCTTGGAGTTTTGGAGCGGCATGTCTAAGTGTTACCCCAACCTTGCAAACTTAGCTCGTGATATCCTCGC
CATTCCTATCTCCACCGTTCCTTCTAAGTCTGTATTTACCGTGGGCGAGAAAGTTGTGAACCCTCGTCGGAGTACGCTCA
AGCCCGATCTACTCGAGATGCTGATCTCGCTCCACGACTGGACATGTCCACATGACAAAAAGGGTACTACATTTCACTGA
AACATTTAATCATTTCTTCTTGGATGGTTTCATATGGTTGCTAGTTCTTGTCATACGGATAGATATAACAACTTTTTTGC
TTCTATTGTAATACGCAGGTATTACTGTCTCTGCTATAGAAGAGGGTATCGATGATGAGGAAGACGAGGAGGATGGTGCA
GACGAATCTGATGAAGAAG---AGAGCACGGAATAA--------------------------------------------
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>chr3B_1_TraesCS3B01G071400
CATCTGCGAGAGGAGAGGAGGACGACCGGGCTCCGACCAGCGAGCAGGGGCGGGGAGCAGGACGGCTAGGGCGAGAGGGG
GAGGAGGGGGAGGAGGGAGGAAGGGGATCCATCTGTTTGTCCGTTTCCTTAGAAAAAGTTTTTTAGCCTGAAATAAGGAA
ACGAAATTCAAAACAGTGTTAAATAAGGAATTGTTTCAAGGCTTTAAGCTGCTGTTTG-----AGGGAAAAAAAACTAAA
ACAGTGCAGCCTGGCCCATTTTTGACTCGCTTT------------AAACCCCTGTTTTGCAGCGCCTCTTCACTTTTCCC
CATTTCATCCCAAACCCCTAAAAAAAAATCATCCCAAACCGGCGGCACCTGCTCCGC------CGCGTCCGCGCCCTGCG
GGCACCCACGGCGAGCGCCTCCAGACGTCTCGGCTCCCGGATCGCCGCCGACGGCCAACCCCGACTCCTTACTTCGGGTC
GATTGCCCTAGGTTTTGCTTCTCATCTTCATCCCATCCTCGCGTTTTCTTCTGTCCCTTTTCCTGCTAACATTTTGGGCG
TAAATTCCTCCTTCCGCAGTCAGATGAAGCAGAACCCTAAGTATCTACGGTGTTTTTCCTTGGATTGGTTAGAAATACTG
AAATTTCTGAGTGGAAAATTGGCGTCTTGAAACCTAATGGGACACGAATTGATTGGAAAATAATGAAATAAAGTCGTTAC
TTTTCCTTTGATTTGGGACCGTTAAGGCCTTGTTCGGTTTGGGAGGGTTTGAAGAGGTTTGAAAGGGATTGAAGGGGATT
AAATCCCTTGCAAGTCAAAATCCTTCTCAAACCTCCCCAATCCCCTTCAATCCCAGTGGCAAGGGGATTAACCGAACATG
GCCTAATGGGGGACCTGAACCCGTGGCATCAACTCCCTACTCAAATATGTTGGAA-CAACCTAATTTTGTGCTGA-----
------------------------------------------CATTCGTCTTGTTGAACAAACATTGAACTGATGTATT-
-------GA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GATATATGTTTCTGTGCAGCGGGCCAAGCCATGTCAACACAAGAAAGCGAGACCGACTGTCAGGTTCT
CCTTGGTGATGAGGCGGAGGAGGTTGAAGAGGATGATGAGTGGGGAGAGGAGGAGGA------------ATATGAGTCAA
GTGGGTCTGAACCAATTCGAAAGCGTCAGAAAGCATCTGACATTTGGGAAGGCTTCATGATTCTTAAGCGCACAAGCAGT
GGGGAATTAGCTAGATGTTCTACATGTGGCAAAACAAGCATGACTTCTCTCTTGACATCCGCACGTTCAGTCGACAAGCC
CCAGGTTGGTCCTGATTATGCTGCTGCTAGAAGATCATTAGCCATGTTTATTATCAACAGTGGGCTGTCATTATCAATGG
TTGAAGAACCCAGTCTTCAGATGTTTATTAGAGCTG--------------------------------------------
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---------TTAATCCGCTGTCTGAAAATATAAACTCTTGTCGCCGTTCTGTTTTAGACAGAGATGTCATGGCTCTTTAT
GGAAGGGAAAAGGATTCTTTGAAATTTATCTTGTCTGAAGCACCTGGGAGAATCAGTTTCGCTATTGATCGCTGGAAGGG
CAAAGAAAATGGAGAAAACTACAACGATGATATCTATATGTGCATCGTGGCTTGCTTTATTGATGTTGATTGGAATTTGC
AGAGAAGAGTAGTGGCTTTCAAACACTTGGCTTTTCCTGACGATGTCGTGTCTGTCGCTGATACTGTAGCATCCTGTTTT
ACTGAATTTGAGGTTGATCAGAAGCTAATGTGCATAACTCTGGATAATGCATTAGATGATGCTTCTGTGGATAATTCAGT
TAAGACGATTGTGCTAGATAAGGACAAATTGTTGTGTGATGGTGAATTATGTCAAATGCATTGTTGCACAGAAATCTTGA
ATTCAGTTGTGCAAGCTGGTCTAGAGCTGATTGATGATGTTGTTGGCAAGATCCGTCATGGAATTCACTATATCACTTAC
TCTAAAAAGAGAGAGGATGAGTTTTATCAGTGTGCTAAAGAAATTTGTCATCTTGATGTTGCAATGAAGTTACGTGCTGA
TCTGGTTATTACTTGGGACTCAACTTACAAAATGCTTTGCTGCGCGCTGTATTACAAGGATGCTCTGAAGCATTTTGCAT
CAAAACATCAGACCTTCTTGTCTAATTTCCATCTTTGTGATGAAGAATGGAACAGGGTGGCAACAATGGAAAAGTTCATA
AAGCCACTCTATGACATCACATGCACTTTCTTAACCACAAAGCACAAAACTGCCAGTTTATACTTTCTTGGACTATACAA
GGTTTACCGATTGTTTGGAGTGACAAAAGGGCAAGAAAACTTCATGGCTGGTATGGTGAAAGACATGACGGCTAAGTTCG
ACAAGTATTGGTCTGAGTACAGTCTTGTTTTGGCTTGTGCGGCTGTTCTTGATCCTCGTTACAAGCTCAACTTAGTCAGC
TTTTGTTTTAAGAAGATCTATGGTGATGTTGGTGCTAGCCAGTATACTGACAGAGTTGTCGCATTGCTCCACAGACTGTT
CGCTCAATATGAGAAGTCGCCGTCTTCTTGTTCAGCTGCAGTTGGGAGTGGTGTTACTGAATACCACGCCAAGGATGATC
TGTTCGATGGTTTTGCTCTGCCGGAACAAAAATCAGAACTGGATTGGTATTTGGAATCACCAGCTATGCATCTAAACACT
GATCTGGATATCTTGGAGTTTTGGAGCGGCATGTCTAAGTGTTACCCCAACCTTGCAAACTTAGCTCGTGATATCCTCGC
CATTCCTATCTCCACCGTTCCTTCTAAGTCTGTATTTACCGTGGGCGAGAAAGTTGTGAACCCTCGTCGGAGTACGCTCA
AGCCCGATCTACTCGAGATGCTGATCTCGCTCCACGACTGGACATGTCCACATGACAAAAAGGGTACTACATTTCACTGA
AACATTTAATCATTTCTTCTTGGATGGTTTCATATGGTTGCTAGTTCTTGTCATACGGATAGATATAACAACTTTTTTGC
TTCTATTGTAATACGCAGGTATTACTGTCTCTGCTATAGAAGAGGGTATCGATGATGAGGAAGACGAGGAGGATGGTGCA
GACGAATCTGATGAAGAAG---AGAGCACGGAATAATCTGATGACAATGATGCTTATTGCTGCGGGTGATTAGGATGTCG
GGCTGCAACTCCAAGCTCTTTTGTCTCATGTGTCATGGCAGTCAGTCTCTTTTGCGGGCTGTGTTGCACATATTGTGTTG
CTTAGCTTGTTGGAGAGCTTGATTTACACATACTGTTATGTTGTTGACAAGTGTTGCTCGTTAAGTTGCTTTTGTTATAT
TTTCCTTGGACTGGCCAAGAAGATGCATCACTATTTCTAGGCAGAGCCTTAAGCCTTTATGAGGCCTGGAGCTCCTAAAT
TCCACATGTATGATTAATTGCAAAGTGTGATCCCTT------------------------------------GTCATGGC
AAAGTTAAATTCTGACGGTGACCTGAAGACATGGTAGCTTTGCTTGGAACTACAGTGTCTCAGCTATTTATATTCTATTT
CTGTGAGTGTCTATCAATTCCAGTTGGTCTCTGCAAACTGCTCTCCTTTTGCAAGTAGAAGCATGACTTCTCAAACT---
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---------------------------------------TTAAGCACTAACAGTTACAAAATTATTTAGAGGTCAAGCAA
AATTGGTGCCTAATAGACATGCCATGAAAATATTTTCACAGTAGA-AAGTTCATTGTTTCTACTACCATTTGCCATGGTG
AAAGCCTGAATGAATTCCTTAAGAAAGACGGAATATAAGGTGTAGAACTGAAATGATCTCTTATATGTTTCTATTGTTGC
CTGGCCTATATATTTGGTAGTCATCTAGATGACATCAGTGAGAATGTGGAAGAAAAAAAGGTCATATGTATCCACTGTTT
ATGATTACATTACAAACTGCAGTATATGATCTCTTATCTGTATA---TGTATCCATACTTACGCAAAGCTACGAACAAAG
CATGATCATGATAAGAAAAAAAATTGCATTTTTCTATGTAAATTAATAATACCTCTATAAGACGCTCTATCAGTTCAAAT
TGAACTGACAAAATGTCATATGTTTATGAACAAACCCACTAAAGAAGTTGTCCATACTGAACCGGTGACTGTCCATCC
>chr3D_198
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-------------------------------------AAGGCTTTAAGCTGCTGTTTGTTGAGAGAGAAAAAAAACTAAA
TCAGTGCAGCCTGGCCCATTCTTTAACTCGCTTAAAACCCTAGCCAAACCCCTGCTTTGCAGCGCCACTTCACTTTTCCC
CATTTCATT-------------------TCATCCCAAACCGGCGGCACCTGCTCCGC------CGCGTCCGCGCCCTGCG
GACACCCACGGCGAGCGCCTCGAGACGTCTCGGCTCCCAGATCGCCGCCAACGGCCAACCCCGACTCCTTACTTCGGGTC
GATTGCCCTAGGTTTTGCTTCTCATCTTCATCCCATCGTCGCGTTTTCCTCCGTCCCTTTTCCTGCTAACATTTTGGGCG
TAAATTCCTCCTTCAGCAATCAGATGAAGCGGAACCCTAGGTATCTACGGTGTTTTTTCTTGGATTGCTCGGAAATACTG
AAATTGCTGAGTGGAAAATTGGCGTCTTGAAACCTAACGGGATACGAATTGTTTCGAAAATAATGAAATAAAATCGTTAC
TTTTCCTTTGATTTGGGACAGTTAAT------------------------------------------------------
--------------------------------------------------------------------------------
--------GGGGACCTGAACTCGTGGCATCAACTCCCTACTCAAATATGTTGGAA-CAACCTAATTTTGTGCTGGCCTCT
C---------AAATATGCCGGAACTACCTAATTTTGTGCTGGCATTCTTCTTGTTGAACAAACATTGGACTGATGTATTA
AGAAATTGA-----------------------------------------------------------------------
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------------GATATATGTTTCTGTGCAGCGGGCAGAGCCATGTCAACACAAGAAAGCGAGGCTGACTATCAGGTTCT
CCTTGGTGATGAGGCGGAGGAGGTTGAAGAGGATGATGAGTGGGGAGAGGAGGAGGAG--GGAGGAGGAATATGAGTCAG
CTGGGTCTGAACCAATTCGAAAGCGTCAGAAAGTATCTGACATTTGGGAAGGCTTCATGATTCTTAAGCGCACACGCAGT
GGGGAATCAGCTAGATGTTCTACTTGTGGCAAAACAGGCATGACTTCTCTCTTGACAACAGCACGTTCAGTCGACAAGCC
CCAGGTTGGTCCTGATTATGCTGCTGCTAGAAGATCATTAGCCATGTTTATTATCACCAGTGGGCTGTCATTATCAATTG
TTGAAGAACCCAGTCTTCAGACGTTTATCAGAGCTG--------------------------------------------
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---------TTAATCCGCTGTCTGAAAATATAAACTCTTGTCGCCGGTCTTTTTTAGACAGAGATGTCATGGCTCTTTAT
GGAAGGGAAAAGGATTCTTTGAAATTTATCTTGTCTGAAGCACCTGGGAGAATCAATTTTGCTATTGATCGCTGGAAGGG
CAAAGAAACCGGAGAAAACTACAACGATGATATCTATATGTGCATCGTGGCTTGCTTTATTGATGTTGATTGGAATTTGC
AGAGAAGAGTAGTGGCTTTCAAACACTTGGCTTTTCCTGACGATGTCGTGTCTGTCGCTGATACTGTAGCATCCTGTTTT
ACTGAATTTGAGGTTGATCAGAAGCTAATGTGCATAACTCTGGATAATGCATTAGATGATGCTTCTGTGGATAATTCAGT
TAAGACGATTGTGCTAGATAAGGACAAATTGTTGTGTGATGGTGAATTATGTCAAATGCATTGTTGCACAGAAATCTTGA
ATTCAGTTGTGCAAGCTGGTCTAGAGCTGATTGATGATGTTGTTAACAAGATTCGTCATGGAATTCACTATATCACTTAC
TCTAAAAAGAGAGAGGATGAGTTTTATCAGGGTGCTAAAGAAATTTGTCATCTTGATGTTGCAATGAAGTTACGTGCTGA
TCTGGTTATTACTTGGGACTCAACTTACAAAATGCTTTGCTGTGCGCTGTATTACAAGGATGCTCTGAAGCATTTTGCAT
CAAAACATCAGACCTTCTTGTCTGATTTCCATCTTTGTGATGAAGAATGGAACAGGGTGGCAACAATGGAAAAGTTCATA
AAGCCACTCTATGACATCACATGCACTTTCTTAACCACAAAGCACAAAACTGCCAGTTTATACTTTCTTGGACTATACAA
GGTTTACCGATTGCTTGGAGTGACAAAAGGGCAAGAAAACTTCATGGCTGGTATGGTGAAAGACATGATGGCTAAGTTCG
ACAAGTATTGGTCCGAGTACAGTCTTGTTTTGGCTTGTGCGGCTGTTCTTGATCCTCGTTACAAGCTCAACCTAGTCAGC
TTTTGTTTTAAGAAGATCTATGGCGATGTTGGTGCTAGCCAGTATACTGACAGAGTTGTCGCATTGCTCCACAGACTGTT
TGCTCAATATGAGAAGTCACCGTGTTCTTGTTCAGCTGCAGTTGGGAGTGGTGGTACTGGGTACCACACCAAGGATGATC
TGTTCGATGGTTTTGCTCTGCCGGAACAAAAATCGGAACTGGATTGGTATTTGGAATCACCAGCTATGCATCTAAACACT
GATCTGGATATCTTGGAGTTTTGGAGCGGCATGTCTAAGTGTTACCCCAACCTTGCAAACTTAGCTCGTGATATCCTCGC
CATTCCTATCTCCACCGTTCCTTCTAAGTCTGTATTTACCGTGGGTGAGAAAGTTGTGAACCCTCGTAGGAGTACGCTCA
AGCCCGATCTACTCGAGATGCTGATCTCGCTCCACGACTGGACATGTCCACATGACAAAAAGGGTACTACATTTTACTTA
AACATTTAATTATTTCTTCTTGGATGGTTTCATATGGTTGGTAGTTCTTGTCATACGGATAGATATAACAACTTTTTTGC
TTCTATTGTAATACGCAGGTATTACTGTCTCTGCTATAGAAGAGGGTATCGATGATGAGGAAGACGAGGAGGATGGTGCA
GACGAATCTGATGAAGAAG---AGAACACGGAAGAATCTCATGACAATGATGCTTATTGCTGCGGGTGATTAGGATGTCG
GGCTGCAACTCCAAGCTCTTTTGTTTCATGTGTTGTGGCAGTCAGTCTCTTTTGCGGGCTGTGTTGCACATACTGTGTTG
CTTAGCTTGTTGGAGAGTTTGATTTACACATACTGTTATGTTGTTGAAAAGTGTTGCTCGTTAAGTTGCTTTTGTTACAT
TTTCCTTGGACTGGCCAAGAAGATGCATCACTATTTCTAGGCAGAGCCTTAAGCCTTCATGAGGCCTGGGGCTCCTAAAT
TCCACATGTATGATTAATTGCAAAGTGTGATCCCTTGAGATCTTTTTTTGTTTAACCAGATGGAGCGACTAGGTCATGGC
AAAGTTAAATTCTGACGGTGACCTGAAG-CATGGTAGCTTTGCTTGGAATTGCAGTTTCTCAGCGATTTATATCCTATTT
CTGTGAGTGTCTATCAATTCCAGTTGGTCTCTGCAAACTGCTCTCCTTTTACAAGTAGAAGCATGACTTCTCAAACTTTA
GGGGGTGTTTGTTTCCAGGGACTTTTTGATGTAGGGACTAGAAAAAGTCCCTCCTAGAGACTTTTTAACCAAACAGGAGG
GACTACTAGGGACTAAAAGTTGCTTTTTGGGACTAAATGAAGAAGACTCTCAAGGAGTCTTTTTTGGGACTTTATGGGAC
TTTTCCAACAATGCCCCTCCTTGCACCCATTAGTAACCTTTAGGGAGGGACTACTAGGGGTAACATGGTCTTTTACATGT
CATTTAATAACCTTTAGGGAGTGACTAGGGACTTTTTAGTCTCTGGAAACAAACAGGTAGGGACTTTTTAGGGACTAGGG
ACTAGAAAAAGTCCTAGGACTTATGAACCAAACAGGGCCTTAAGCACTAACAGTTACAAAATTATTTAGAGGTCGAGCAA
AATTGGTGCCTAATAGAGTTGTCATGAAAATATTTTCACAATAGAAAATTTCATTGTTTCTACTACCATTTGCCATGGTG
AAAGCCTGAATGAATTCCTTAAGAAAGACGGAATATAAGGTGTAGAACTGAAATGATCTCTTATATGTTTCTATTGTTGC
CTGGCCTATGTATTTGGTAGTCATCTAGATGACATCAGTGACAATGTGGAAG-AAAAAAAGTCATATGTATCTACTGTTT
ATGATTACATTACAAACTGCAGTATATGATCTCTTATCTGTTCCTATTGTTTCCATATTTACGCAAAGCTACAAACAAAG
CATGATCATGATAAGAAAAAAA--TGCATTTTTCTCTGTAAATTAATAATACCTCTATAAGAC-----------------
------------------------------------------------------------------------------
>chr3A_332
--------------------------------------------------------------------------------
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----------------------------TCTTCCCAAACCAGCGGCACCTGCTCCGCCGCGGGCGCGTCCGTGCCCTGCG
GGCACCCACGGCGAGCGCCTCCGGACGTCTCGACTCCCAGATCGCCGCCGACGGCCAACCCCGACTGCTTACTTCATGTC
GATTGCCCCAGGTTTTTCTTCTAACCTTCATCCCATCGTTGCATTTTCTTCCTACCCTTTTCCTGCTAACTTTTTGGGCG
TAAATTCCTCCTTCCGCAATTATATCAGGCGGTACCCTAGGTGTCTACGGTGTTTTTTCTTGTATTGGTCAGAAATACTG
AAATTGTTGAGTGGAAAATTGGCGTCTTGGAAACTAACGGGATACGAATTGTTTCGAAAATAATAAAATAAAATCGTCAC
TTTTCCTTTGAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTGGAA-CAACCTAATTTTGTGTTGGCCTCT
C---------AATATATT-GGAACAACCTAATTTTGTGTTGGCATTCTTCTTGTTGAACAAACATTGAACTGATGTATAT
----ATTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GAAATATGTTTCTGTGCAGCGGGCAGAGCCATGTCAACACAAGAAAGTGAGGCTGACTATCAGGTTCT
CCTTGGTGATGAGGCGGAGGAGGTTGAAGAGGATGATGAGTGGGGAGAGGAG------------GAGGAATGTGAGTCAA
GTGGGTCTGAACCAATTCGAAAGCGTCAGAAAGCATCTGACATTTGGGAAGGCTTCATAATTCTTAAGCGCACAAGCACT
GGGGAATCAGCTAGATGTTCTACTTGTGGAAAAACAAGCATGACTTCTCTCTTGACATTCGCACGTTTAGTTGAAAAGCC
CCAGGTTGTTCCTGATTATGCTGCTGCTAGAAGATCATTAGCCATGTTTATTATCACCAGTGGGCTGTCATTATCAATTG
TTGAAGAACCCAGTCTTCAGACGTTTATTAGAGTTG--------------------------------------------
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---------TTAACCCGCTATCTGAAAATATAAACTCTTGACGCCGATCCGTTTTAGACAGAG-TGTCATGGTTCTTTAT
GGAAGGGAAAAAGATTCTTTGAAATTTATCTTGTCTGAAGCACCTGGGAGAATCAGTTTCGCTGTTGATAGCTGGAAGGG
CAAAAAAATCGGAGAAAACTACAATGATGATATCTATATGTGCATCGTGGCTTGCTTTATTGATGTTGATTGGAATTTGC
AGAGAAGAGTAGTGGCTTTCAAACACTTGGCTTTTCCTGATGATGTTGTGTCTGTCGCTGATACTATAGCATCCTGTTTT
GCTGAATTTGAGGTTGATCAGAAGCTAATGTGCATAACTCTGGGTAATGCATTAGATGATGCTTCTATGGATAATCCAGT
TAAGATGATTGTGCTAGATAAGGACAAATTGTTGTGTGATGGTTCATTATGTCAAATGCATTGTTGCACGAAAATCTTGA
ATTCAGTTGTCCAAGTTGGTCTAGAGCTGATTGATGATGTTATCGACAAGATTCGTCATGGAATTCACTATATCACTTAC
TCTAAAAAGAGAGAGGATGAGTTTTATTAGGGTGCTAAAGAAATTTGTCATCTTTATGTTGCAATGAAGTTCCATGCTGA
TCTGGTTATTACTTGGGAGTCAACTTACAAAATGCTTTGCTATGCGCTGTATTACAAGGATGCTCTGAAGCATTTTGCAT
CAAAACATCAGACCTTCTTGTCTAATTTCCATCTTTGTGATGAAGAATGGAACAGGGTGGCAACAAAGGAAAAGTTCATA
AAGCCACTCTATGACATCACATGCACTTTCTTAACCACAAAGCACAAAACTGCTAGTTTATACTTTCTTGGACTATACAA
GGTTTACCGATTGCTTGGAGTGACAAAAGGGCAAGATAACTTCATGGCTAGTATGGTCAAAGACATGACGGCTAAGTTCA
ACAAGTATTGGTCAAAGTACAACCTCGTTTTGGCTTGTGCGGCTGTTCTTGATCCTCGTTACAAGATCAATCTAGTCAGC
TTTTGTTTTAAGAAGATCTATGGTGATGTTGGTGCTAGCCAGTATACTGACAGAGTTGTCGCATTGCTCCACAGACTGTT
CGATGAATATGAAAAGTCGTTGTCTTCTTGTTCAGCTGTAGTTGGGAGTGGTGTTACTGAATACCAAACCAAGGATGATC
TGTTTTATGGTTATGCACTGCCAGAACAAAAATCGGAACTGGATTGGTATCTGGAATCACCAGCTATGCATCT-------
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>chr3A_332
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------TCTTCCCAAACCGGCAGCACCTTCTCCGCCACGTCCGCACCCTGCGGCTGCG
GGCACCCACAGGGAGTGCCTCCAGACGTCTCGGCTCCCGGATCGCCGCCAACAGCCAACCCTGACTCCTTACTTCTCGTT
GATTGCCCTAGGTTTTGCTTCTCATCTTCATCCCATCATCGCGTTTTCTTCTGTCCC-TTTCCTGCTAACAATTTGGGCC
TAAATTCCTCCTTCCGCAACCATATCAAGCGGAACCCTAGGTACCTATGGTGTTTTTCCTTGGATTGGTCAGAAATACTG
AAATTGCTGAGTGGAAAATTGGCGTCTTGAAACCTAATGGGATACAAATTGTTTGGAAAATAATGAAATTAAGTCGTTAC
TTTTCGTTTGATTTGGGACCGTTAAT------------------------------------------------------
--------------------------------------------------------------------------------
--------GGGGACCTGACTCTTAGGCATCAACTCCCTACTCAAATATGTTGGAAACAACCTAATTTTGTGTTGGCCTCT
AAAATAGTCAAATATGTT-GGAACAACCTAATTTTGTGCTGGCATTCTTCTTGTTGAACAAACATTGGACTGATGTATTA
AGAAATTGAGATATACTCCCTCCGTTTCCTAAATATTTGTCTTTCTAGAGATTTCGACATGTGACTATATACGGAGCAAA
ATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTGATAGTCCATTTGAAATCTCTAAAAAACAAATAT
TTAGGAACGGAGGAAGTATGTTTCTGTGCAGCGGTCAGAGCCATGTCAACACAAGAAAGCGAGACCGACTATCAGGTTCT
CCTTGGTGATGAGGCGGAGGAGGTTGAAGAGGATGATGAGTGGGGAGAGGAGGAGGAGGAGGAGGAGGAATATGAGTCAG
CTGGGTCTGAACCAATTCGAAGGCGTCAGAAAGCATCTGACATTTGGGAAGGCTTCATGATTCTTAAGCGCACAAGCACT
GGGGAATCAGCTAGATGTTCTACTTGTGGCAAAACAGGCATGACTTCTCTCTTGACATCAGCACGTTCAGTTGACAAGCC
CTAGGTCGGTCCTGATTATGATGCTGCTAGAAGAGCATTAGCCATGTTTATTATCAACAGTGGGCAGTCATTATCAATTG
TTGAAGAACCCAGTCTTCAGATGTTTATTAGAGTTGTTAGGCAACTCCAGCGCATGACCCTAAACGGACGCCCGTTTTGC
CAGAATTCTGTCCGTTTGGGTAGGGCAATGAGGTCATGTCCATGCCTGTCCTAGGATGTGGTGGCCGTGCACCCAGTGCG
CAGGCGTATCCTTTGGCCCCATCCTGTTCGCCACGGCAAAAAATGCCCATATATTCATATTTCAATATTCAAAACAAGTT
TGCACGTCCAAATATTAATTGTCTGAAAATTAAAATAGTTTTACAACCCAATCACAATTGTCTCTAATAAAATAGTTTTA
CAACCAAATCGAAATTGTCTTGAATGAACATAATGAACCAATACATCTATTGGTTGCCAATGTGAGTCCACACATGCTCA
ACCAAGTCATTTTAAAGATCCAAATGAGTGTGCCAATCACGTATTTCACTATGAAATTGGGCAAACTATTCAAACATGGT
CGGTTCTTGGTGTAGAGGCTCAACATTTTCACCTTGAAAATCAAATCCTTGGTCGAAGATGTTGTCATCACGCTCGTCCT
GACGATCATGTTGTGCATGATCACACAAGCAGTCATCACCTCCCGAAGCTTCCCTTCATCCCATGTCAGTGCAGGGATTC
GAACGATACCCCATCGGGATTGAAGCACACCAAAAGCATGTTCCACATCCTTTCCAGCACTCTCTTTTATTTGGGCAAAT
CTCTTTCTCTTCTCACCTTGGGGGTTCGAGATTGTCTTTACAAAAGTTGACCACTGAGGATATATACCATCAGCATGGCA
GTATCCCTTGTTGTACTGGTGGCCGTTGATCCCAAAGTTGACAGGTGGGGAGTGACCTTCTGCAAGCCTTGCAAAGACTG
GAACGCTGCAGCACGTTGATATCATTGTGAGAACCTGCCATGCCGAAAAAAGAATGCCATATCTAAAGATCCTGTGAAGC
CACCGCTTCTAATATGATAGTGCATGCTTTAACATGCCCCTTGTACTGGCCCTGCCAAGGAAATGGACAGTTCTTCCACT
CCCGGTGCATACAATCTATGCTGCCAAGCATGCCTGGATAGCCTCTAGCTGCGTTGGTCGCCAACAATCTCTCTGTATCA
GCGGCATTTGTCTCCCTCAAGTACTCAGGGCCAAACACTGCCACCACGGCCTTGCAGAAGCTGTACAGTGACAACAGACA
TGTGGACTCGCTCATACACACATACTCATCCACCAGATCGCCTGGAATTCCATATGCAAGCATGCGGATGCCCGCGGTGC
ATTTCTAGTAAGAGAAGACTCCAAGCTTGCCAAGGGCATCCGTCTTGCACTCGAAGTATGGGTCATGAGCAACCACTCCC
TCTCAGATACGATTGAACACATGCCTTGCCATACGAAAACGGCGACGGAATTTATCCGGCTTGAAGAGAGGGGTGTTCGC
TAAGTAATCGGCATAGAGCATGGCGTGGCCTCTCTCCATGTTGCGGTTTAGGTTGGGAGCACGGCCAGGGTGTGACCCCT
TGTACCGAGGAAGCTGCCGTTCAATGTGGTCGTGAACGACCAGCGCAGCCACCACAAGATCTTCATCATGCGAGGACAAA
ACGTCCGATGAATAGATGAAGTGGTGGGAGAAAAATTCATCTCCACTGTCCATACCTTTGTGGGAAAAGTGTCAAACACC
TTGCGGTCGTGGTGGCAAAGAGGCCGCGATGATCACATTGATGCAGCAGGGGTGGTTGGCAGCCGGCTATTGGCCACTCT
GAAGCACTCGTCGGAAGCTGCCGTGGCCCATAAACGTCGCCGACGGTCATATCCCCTCTGGCACCGGCTACGACGGCGAC
GGCCAATTCTCCTCCAAGCGACGGCCAAAACTCCTATGAAAGCGCGGGCGTGGTGGCGGCCATGTCGAGACGTGGTTTGG
TATGGAAGGCTGGGGGGTGAGCAGTGAGGAGGCGGCCAGAGAATAGTGGCGGCGCCGGCGGCCGGCTGGGGCGACGGAGA
GCGGGTGGAGGCGTTGGAGAGGAATGGACTGCTAGTGTCCCCGACAGGCGGGCCACGGAGGGACAAGGGCATGCGTCGAG
CCCGTCCACGCGATGTCTGTTTCACCCCAAACTCGGCACAAGTTTGGGTCAGGAATGGGTCGAAAACAGACGAAATCCGG
ACATTTGTGTGTTTGGGGCCGCGCTATTCATCCGTTCTACCCCAAACTGATGCACCCGGACAAGATGGGGTCGCGCGCTG
GAGTTGGCCTTAATCCGCTGTCTGAAAATATAAACTCTTGTCGCCGTTCTGTTTTAGACAGAGATGTCACGGCTCTTTAT
GGAAGGGAAAATGATTCTTTGAAATTTATCTTGTCTGAAGTACCTGGGAGAATCAGTTTCGCTATTGATCGCCGGAAGGG
CAAAGAAACCGGAGAAAACTACAATGATGATATCTATATGTGCATCGTGGCTTGCTTTATTGATGTTGATTGGAATTTGC
AGAGAAGAGTAGTGGCTTTCAAACACTTGTCTTTTCCTGATGATGTCGTGTTTGTCGCTGATACTGTAGCATCCTGTTTT
ACTGAATTTGAGGTTGATCAGAAGCTAATGTGCATAACTCTGGATAATGCATTAGATGATGCTTCTGTGGATAATTCAGT
TAAGACGATTGTGCTAGATAAGGACAAATTGTTGTGTGATGGTGAATTATGTCAAATGCATTGTTTCACAGAAATCTTGA
ATTCAGTTGTGCAAGCTGGTCTAGAGCTGATTGATGATGTTGTTGCCAAGATTCGTCATGGAATTCACTATATCACTTAC
TCTAAAAAGAGAGAGGATGAGTTTTATCAGGGTGCTAAAGAAATTTGTCATCTTGATGTTGCAATGAAGTTACGTGCTGA
TCTGGTTATTACTTGGGACTCAACTTACAAAATGCTTTGCTGTGCGCTTTATTACAAGGATGCTCTGAAGCATTTTGCAC
CAAAACATCAGACCTTCTTGTCTAATTTCCATCTTTGTGATGAAGAATGGAACAGGGTGGCAACAATGGAAAAGTTCATA
AAGCCACTCTATGACATCACATGCACTTTCTTAACCACAAAGCACAAAACTGCCAGTTTATACTTTCTTGGTCTATACAA
GGTTTACCGATTGCTTGGAGTGACAAAAGGGCAAGAAAACTTCATGGCTGGTATGGTGAAAGACATGACGGCTAAGTTCG
ACAAGTATTAGTCAGAGTACAGCCTCGTTTTGGCTTGTGCGGCTGTTCTTGATCCTCGCTACAAGCTCAACCTAGTCAGC
TTTTGTTTTAAGAAGATCTATGGTGATGTTGGTGCTAGCCAGTATACTGACAGAGTTGTCGCATTGCTCCA--GACTGTT
CGGTGAATATGAAAAGTCGCCATCTTCTTGTTCAGCTGCAGTTGGGGGTGGTGTTACTGAATACCACACCAAGGATGATC
TGTTTGATGGTTATACTCTGCCAGAACAAAAATCGGAACTGGGTTGGTATTTGGAATCACCAGTTATGCATCTAAACACT
GATCTGGATATCTTGGAATTTTGGAGCGGCATGTCTAAGTGTTACCCCAACCTTGCAAACTTAGCTCGTGATATCCTCGC
CATTCCTATCTCCACCGTTCCTTCTAAGTCTGTATTTACATTGGGCGAGAAAGTTGTGAACCCTCGTCGGAGTACGCTCA
AGCCCGATCTACTCGAGATGCTGATCTCTCTCCACGACTGGACATGTCCACATGACAAAAAGGGTACTACATTTTACTTA
AACATTTAATTACTTCTTCTTGGATGATTTCATATGGTTGGTAGTTCTTGTCATACGGATAGATATAACAACTTTTTTGC
TTCTATTGTAATATGCAGATATTACTGTCTCTGCTATAAAAGAGGATATCGATGATGAGGAAGACGAGGAGGATGGTGCA
GACGAATCTGATGAAGAAGAAGAGAGCACGGAAGAATCTGATGACAATGATGCTTATTGCTGTGGGTGATTAGGATGTCG
GGCTGCAACTCCAAGCTCTTTTGTTTCATGTGTCGTGGCAGTCAGTCTCTTTTGTGGGCTGTGTTGCACATACTGTGATG
TTTAACTTGTTGGAGAGTTTAATTTACACATACTGTTATGTTGTTGACAAGTGCTGCTCGTTAAGTTGCTTTTGTTACA-
TTTCCTTGGACTGGCCAAGAAGATGCATCACTATTTCTAGGCAGAGCCTTAAGCCTTTATGAGGCCTGGAGCTCCTAAAT
TCCACATGTATGATTAATTGCAAAGTGTGATCCCCTGAGTTCTTTTTTTGTTTAACCAGATGGAGCGACTAGGTCATGCC
AAAGTGAAATTCTGATGGTGACCTGTAGACATGGTAGCTTTGCTTGGAACTGCATTGTCTCAGCTATTTATATTCTATTT
CTGTGACGGTCTATCAATTCCAGTTGGTCTCTGCAAACTGATCTCCTTTTACAAGTAGAAGCATGACTTCTCAAACTTTA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGCACTAATAGTTACAAAATAATTTAGAGGTCAAGCAA
AATTAGTGCCTAATAGACTTGTCATGATAATTTTTTCACAGTAGAGAAGTTCATTGTTTCTACTACCATTTGCCATGGTG
AAAGCTTGAATGAATTCCTTGAGAAAGATGGAATATAAGGTGAATAAGTGAAATGCTCTCTATCTGTTTCT---------
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>chr3A_2641
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-------------------------------------------------------------------GCATCTAAACACT
GATCTGGATATCTTGGAGTTTTGGAGCGGCATGTCTAAGTGTTACCCCAACCTTGCAAACTTAGCTCGTGATATCCTCAC
CATTGCTATCTCCACCGTTCCTTCTGAGTCTGTATTTACCGTGGGCGAGAAAGTTGTGAACCCTCGTCGGAGTATGCTCA
AGTCCGATCTACTCGAGATGCTGATTTCGCTCCATGACTGGACATGTCCACATGACAAAAAGGGTACTACATTTTAATGA
AATATTTAATCATTTCTTCTTGGATGGTTTCATATGATTGGTAGTTCTTGTCATACGGCTAGATATAACATA-TTTTTGC
TTCTATTATAATTCGCAGGTATTACTGTCTCTGCTATAGAAGAGTGCATCGATGATGAGGAAGATGAGGAGGATGGTGCA
GACTAATCTGATGAAGAAGAAGAGAGCATGGAAGAATCTGATGACGATGTTGCTTATTGCTGCGGGTGATTAAGATGTCA
GGCTGCAACTCCAAGCTCTTTTGCAGGCTGTGTGGTGGTAGTCAGTCTCTTTTGC-GGCTGTGTTGCACATACTGTGATG
TTTAACTTGTTGGGGAGTTTGATTTACACATGATGTTATGTTGTTGATGAGTGTTGCTCGTCAAGTTGCTTTTGTTACAT
TTTCCTTGGACTGGCCAAGAAGATGCATCATTATTTCCAGGCAGAGCTTTAAGCCTTTATAAGTCCTGGAGCTCCTAGAT
TCCACTTGTATGATTAATTGCAAAGTGTGATCCCTTGAGTTCTTTTTTTGTTTAACCAGATGGAGCGACTAGGTCATGGT
AAAGTTAAATTCTGATGGTGACCTGAAGACATGGTAGCTTTGCTTGGAACCGCAGTGTCCCAGCTATTTA----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S--------------
S-------------------S--S-SSSSSS-----------------------S-----------S-------------
--------SSSSSSSSSSSSSSSSSSSS----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
------------------S-----------S--------S-----------------------------S----------
-----S------------------------------------S--------S----------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------S-----
-----------------------------------------------S--------------------------------
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------------------------------------SS--------------------------------S---------
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-------S---------------S--------------------------------------------------------
------------------------------------------------------------------------------S-
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--------SS----------------------------------------------------------------------
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---------------------------------------------S------S---------------------------
------------------------------S-------------------------------------------------
------------------------------------------S-------------------------------------
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-------------S------------------------------------------------------------------
-------------S---------------------------------------------------------S--------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------------------S---------S-------------------------------------S-------
-----------------S-----------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--S----------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------------S----------S------S------------S-------
-----------------------------------------SSS------S------S--------------S-------
----------------------SS-----------S---------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_845
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-------------------------CTCAAACCTCCCCAATCCCC-----------------------------------
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>reverse_4523
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------------------------------------------CGCGCTGTATTACAAGGATGC-----------------
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>forward_874
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------------------------------------------------------AGTGGCAAGGGGATTAACCG------
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>reverse_4734
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-------------TTTGGAGTGACAAAAGGGCA-----------------------------------------------
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>forward_875
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-------------------------------------------------------GTGGCAAGGGGATTAACCGA-----
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>reverse_5028
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-------------------------------------------------------------------GCCAAGGATGATC
TGTTCGA-------------------------------------------------------------------------
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>forward_4009
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---------------------------------------------------------------------CGCTGGAAGGG
CAAAGAAAA-----------------------------------------------------------------------
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>reverse_5625
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------------------------CTCATGTGTCATGGCAGTCAG-----------------------------------
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------------------------------------------------------------------------------
