Multiple sequence alignment - TraesCS3B01G043100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G043100 chr3B 100.000 4250 0 0 1 4250 22194498 22198747 0.000000e+00 7849.0
1 TraesCS3B01G043100 chr3B 79.254 670 95 22 1804 2444 22161254 22161908 1.090000e-115 427.0
2 TraesCS3B01G043100 chr3B 86.580 231 29 1 1 231 14011652 14011880 1.960000e-63 254.0
3 TraesCS3B01G043100 chr3B 88.500 200 19 3 4053 4250 22172298 22172101 5.490000e-59 239.0
4 TraesCS3B01G043100 chr3B 84.681 235 33 3 1 234 134620649 134620417 9.190000e-57 231.0
5 TraesCS3B01G043100 chr3B 83.830 235 35 3 1 234 135352492 135352724 1.990000e-53 220.0
6 TraesCS3B01G043100 chr3D 91.699 2036 98 34 1802 3794 15205731 15207738 0.000000e+00 2758.0
7 TraesCS3B01G043100 chr3D 89.216 918 59 11 847 1739 15204790 15205692 0.000000e+00 1110.0
8 TraesCS3B01G043100 chr3D 93.069 202 13 1 4050 4250 15209019 15209220 1.160000e-75 294.0
9 TraesCS3B01G043100 chr3A 91.356 1261 57 27 2425 3674 21214511 21213292 0.000000e+00 1677.0
10 TraesCS3B01G043100 chr3A 88.818 1091 67 26 746 1798 21216206 21215133 0.000000e+00 1288.0
11 TraesCS3B01G043100 chr3A 84.332 734 64 23 1 730 21216879 21216193 0.000000e+00 671.0
12 TraesCS3B01G043100 chr3A 88.770 561 26 12 1802 2335 21215066 21214516 0.000000e+00 652.0
13 TraesCS3B01G043100 chr3A 77.273 506 79 18 1804 2285 21286970 21286477 9.060000e-67 265.0
14 TraesCS3B01G043100 chr3A 87.940 199 23 1 4050 4247 21267550 21267748 2.560000e-57 233.0
15 TraesCS3B01G043100 chr3A 86.869 198 26 0 4053 4250 21169558 21169361 5.530000e-54 222.0
16 TraesCS3B01G043100 chr3A 84.545 220 34 0 13 232 202823421 202823202 7.150000e-53 219.0
17 TraesCS3B01G043100 chr3A 85.859 198 28 0 4053 4250 21177320 21177123 1.200000e-50 211.0
18 TraesCS3B01G043100 chr3A 85.124 121 16 2 2435 2554 21286465 21286346 5.770000e-24 122.0
19 TraesCS3B01G043100 chr3A 75.481 208 41 8 4050 4250 21298135 21298339 4.520000e-15 93.5
20 TraesCS3B01G043100 chr4B 85.455 220 30 1 13 232 270820294 270820511 1.190000e-55 228.0
21 TraesCS3B01G043100 chr2B 84.279 229 33 3 8 235 65057036 65057262 1.990000e-53 220.0
22 TraesCS3B01G043100 chr7D 83.262 233 39 0 1 233 504515649 504515417 9.260000e-52 215.0
23 TraesCS3B01G043100 chr7D 100.000 28 0 0 1005 1032 593273549 593273522 8.000000e-03 52.8
24 TraesCS3B01G043100 chr2D 82.833 233 37 2 1 232 38193266 38193496 5.570000e-49 206.0
25 TraesCS3B01G043100 chr5D 100.000 29 0 0 522 550 86740431 86740403 2.000000e-03 54.7
26 TraesCS3B01G043100 chr5D 100.000 29 0 0 522 550 86755252 86755224 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G043100 chr3B 22194498 22198747 4249 False 7849.000000 7849 100.000 1 4250 1 chr3B.!!$F3 4249
1 TraesCS3B01G043100 chr3B 22161254 22161908 654 False 427.000000 427 79.254 1804 2444 1 chr3B.!!$F2 640
2 TraesCS3B01G043100 chr3D 15204790 15209220 4430 False 1387.333333 2758 91.328 847 4250 3 chr3D.!!$F1 3403
3 TraesCS3B01G043100 chr3A 21213292 21216879 3587 True 1072.000000 1677 88.319 1 3674 4 chr3A.!!$R4 3673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.248702 TTTTCGTTTCAAGCACCCGC 60.249 50.0 0.00 0.00 38.99 6.13 F
1779 1836 0.034337 GTGTGGTGTCCCGTACATGT 59.966 55.0 2.69 2.69 41.10 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2079 0.174845 CACTTGCGACCGGATTAGGA 59.825 55.0 9.46 0.0 34.73 2.94 R
3686 3868 0.833834 ATCTATGAGCCTCCCACGGG 60.834 60.0 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.290323 GCTACAACCAGTGGACCTCATT 60.290 50.000 18.40 0.00 0.00 2.57
56 57 8.410141 AGAAAGTAGAGATTCTAGTACACATGC 58.590 37.037 0.00 0.00 31.73 4.06
62 63 5.767269 AGATTCTAGTACACATGCATCTCG 58.233 41.667 0.00 0.00 0.00 4.04
68 69 4.177026 AGTACACATGCATCTCGACTTTC 58.823 43.478 0.00 0.00 0.00 2.62
69 70 3.325293 ACACATGCATCTCGACTTTCT 57.675 42.857 0.00 0.00 0.00 2.52
97 98 7.551585 TCCAACTTTTTCAGCTTTTTACATCA 58.448 30.769 0.00 0.00 0.00 3.07
105 106 6.403866 TCAGCTTTTTACATCAAACCACAT 57.596 33.333 0.00 0.00 0.00 3.21
126 127 0.248702 TTTTCGTTTCAAGCACCCGC 60.249 50.000 0.00 0.00 38.99 6.13
145 146 3.157252 TCCTGCAGAGGATCCCGC 61.157 66.667 17.39 9.85 44.13 6.13
148 149 1.227497 CTGCAGAGGATCCCGCTTC 60.227 63.158 8.42 1.31 35.27 3.86
156 157 3.537206 GATCCCGCTTCCCCATCCG 62.537 68.421 0.00 0.00 0.00 4.18
159 160 2.510906 CCGCTTCCCCATCCGAAT 59.489 61.111 0.00 0.00 0.00 3.34
172 173 4.284490 CCCATCCGAATCTATTTCTCCTGA 59.716 45.833 0.00 0.00 31.73 3.86
173 174 5.233988 CCATCCGAATCTATTTCTCCTGAC 58.766 45.833 0.00 0.00 31.73 3.51
176 177 6.090483 TCCGAATCTATTTCTCCTGACATC 57.910 41.667 0.00 0.00 31.73 3.06
192 193 1.837439 ACATCCGATCCTACAAGGCAA 59.163 47.619 0.00 0.00 34.61 4.52
228 229 1.117142 GGGCTATGCATTGGCCATGT 61.117 55.000 36.79 2.36 46.87 3.21
240 241 3.845781 TGGCCATGTCCTTATCTCTTC 57.154 47.619 0.00 0.00 0.00 2.87
244 245 3.389329 GCCATGTCCTTATCTCTTCCTCA 59.611 47.826 0.00 0.00 0.00 3.86
276 277 2.744709 GCCGCCGTTTTCTGCCTA 60.745 61.111 0.00 0.00 0.00 3.93
307 308 9.594478 TTTCCTGGTTTCTCTTTTTGTTATTTC 57.406 29.630 0.00 0.00 0.00 2.17
327 328 2.634940 TCAGTTGCTCTTAGCTTGGTCT 59.365 45.455 0.00 0.00 42.97 3.85
328 329 3.071602 TCAGTTGCTCTTAGCTTGGTCTT 59.928 43.478 0.00 0.00 42.97 3.01
329 330 3.434984 CAGTTGCTCTTAGCTTGGTCTTC 59.565 47.826 0.00 0.00 42.97 2.87
330 331 3.326297 AGTTGCTCTTAGCTTGGTCTTCT 59.674 43.478 0.00 0.00 42.97 2.85
331 332 3.601443 TGCTCTTAGCTTGGTCTTCTC 57.399 47.619 0.00 0.00 42.97 2.87
332 333 3.169099 TGCTCTTAGCTTGGTCTTCTCT 58.831 45.455 0.00 0.00 42.97 3.10
333 334 3.580458 TGCTCTTAGCTTGGTCTTCTCTT 59.420 43.478 0.00 0.00 42.97 2.85
334 335 4.040952 TGCTCTTAGCTTGGTCTTCTCTTT 59.959 41.667 0.00 0.00 42.97 2.52
335 336 5.000591 GCTCTTAGCTTGGTCTTCTCTTTT 58.999 41.667 0.00 0.00 38.45 2.27
336 337 6.166982 GCTCTTAGCTTGGTCTTCTCTTTTA 58.833 40.000 0.00 0.00 38.45 1.52
337 338 6.821160 GCTCTTAGCTTGGTCTTCTCTTTTAT 59.179 38.462 0.00 0.00 38.45 1.40
338 339 7.335673 GCTCTTAGCTTGGTCTTCTCTTTTATT 59.664 37.037 0.00 0.00 38.45 1.40
500 509 8.801715 ATTGTGAACTTTTACTAATTGTGCAG 57.198 30.769 0.00 0.00 0.00 4.41
503 512 6.863126 GTGAACTTTTACTAATTGTGCAGCAT 59.137 34.615 0.00 0.00 0.00 3.79
504 513 7.061094 GTGAACTTTTACTAATTGTGCAGCATC 59.939 37.037 0.00 0.00 0.00 3.91
505 514 6.824305 ACTTTTACTAATTGTGCAGCATCT 57.176 33.333 0.00 0.00 0.00 2.90
506 515 7.921786 ACTTTTACTAATTGTGCAGCATCTA 57.078 32.000 0.00 0.00 0.00 1.98
507 516 8.335532 ACTTTTACTAATTGTGCAGCATCTAA 57.664 30.769 0.00 0.00 0.00 2.10
508 517 8.960591 ACTTTTACTAATTGTGCAGCATCTAAT 58.039 29.630 0.00 0.00 0.00 1.73
514 523 9.740239 ACTAATTGTGCAGCATCTAATAAAATG 57.260 29.630 0.00 0.00 0.00 2.32
515 524 9.740239 CTAATTGTGCAGCATCTAATAAAATGT 57.260 29.630 0.00 0.00 0.00 2.71
516 525 7.997107 ATTGTGCAGCATCTAATAAAATGTG 57.003 32.000 0.00 0.00 0.00 3.21
517 526 6.513806 TGTGCAGCATCTAATAAAATGTGT 57.486 33.333 0.00 0.00 0.00 3.72
518 527 6.324042 TGTGCAGCATCTAATAAAATGTGTG 58.676 36.000 0.00 0.00 0.00 3.82
519 528 6.150809 TGTGCAGCATCTAATAAAATGTGTGA 59.849 34.615 0.00 0.00 0.00 3.58
520 529 6.470235 GTGCAGCATCTAATAAAATGTGTGAC 59.530 38.462 0.00 0.00 0.00 3.67
521 530 5.973565 GCAGCATCTAATAAAATGTGTGACC 59.026 40.000 0.00 0.00 0.00 4.02
522 531 6.498304 CAGCATCTAATAAAATGTGTGACCC 58.502 40.000 0.00 0.00 0.00 4.46
535 544 9.454859 AAAATGTGTGACCCTTTTTAAAATTCA 57.545 25.926 0.55 0.46 0.00 2.57
536 545 9.625747 AAATGTGTGACCCTTTTTAAAATTCAT 57.374 25.926 0.55 0.00 0.00 2.57
537 546 8.606040 ATGTGTGACCCTTTTTAAAATTCATG 57.394 30.769 0.55 0.00 0.00 3.07
538 547 7.786030 TGTGTGACCCTTTTTAAAATTCATGA 58.214 30.769 0.55 0.00 0.00 3.07
539 548 8.260818 TGTGTGACCCTTTTTAAAATTCATGAA 58.739 29.630 11.26 11.26 0.00 2.57
540 549 8.547894 GTGTGACCCTTTTTAAAATTCATGAAC 58.452 33.333 11.07 0.00 0.00 3.18
541 550 8.260818 TGTGACCCTTTTTAAAATTCATGAACA 58.739 29.630 11.07 0.00 0.00 3.18
542 551 9.271828 GTGACCCTTTTTAAAATTCATGAACAT 57.728 29.630 11.07 0.00 0.00 2.71
543 552 9.844257 TGACCCTTTTTAAAATTCATGAACATT 57.156 25.926 11.07 11.12 0.00 2.71
634 644 6.324561 TCGTGATCATTTTCCAAATTCACA 57.675 33.333 0.00 0.00 33.38 3.58
933 943 6.216750 GCTACATGCGAAGAAAAGTATAGG 57.783 41.667 0.00 0.00 0.00 2.57
934 944 5.753921 GCTACATGCGAAGAAAAGTATAGGT 59.246 40.000 0.00 0.00 0.00 3.08
1014 1025 3.934962 GCGATGGCCTCCTCCTCC 61.935 72.222 3.32 0.00 0.00 4.30
1065 1091 3.766691 GTCGGCCGCAACCTCCTA 61.767 66.667 23.51 0.00 0.00 2.94
1095 1121 4.778143 GGGCGTGTGAGGGCGATT 62.778 66.667 0.00 0.00 0.00 3.34
1316 1342 2.835389 TGCCAACCCTACCTACATACA 58.165 47.619 0.00 0.00 0.00 2.29
1333 1359 0.990374 ACAGCATCCTCCTCTGCTTT 59.010 50.000 0.00 0.00 46.22 3.51
1379 1408 7.270757 TGAATTAATTGTCCATGATAACCGG 57.729 36.000 5.17 0.00 0.00 5.28
1493 1544 6.032094 CCTGCATTTTCACTTGATGACATAC 58.968 40.000 0.00 0.00 36.92 2.39
1494 1545 5.953183 TGCATTTTCACTTGATGACATACC 58.047 37.500 0.00 0.00 36.92 2.73
1566 1623 0.909133 TGATGGTCACCAGCCTGCTA 60.909 55.000 10.28 0.00 39.46 3.49
1575 1632 0.106819 CCAGCCTGCTATCTTGCCTT 60.107 55.000 0.00 0.00 0.00 4.35
1576 1633 1.684248 CCAGCCTGCTATCTTGCCTTT 60.684 52.381 0.00 0.00 0.00 3.11
1594 1651 0.322816 TTCAGGCTTTAGCTGCTGGG 60.323 55.000 13.43 3.28 41.70 4.45
1597 1654 2.361610 GCTTTAGCTGCTGGGCCA 60.362 61.111 13.43 5.85 38.21 5.36
1609 1666 4.086547 GGGCCATTGGTGCAAGCC 62.087 66.667 4.39 0.00 43.09 4.35
1633 1690 3.568538 CAACTTTGCAGTTATGTCTGGC 58.431 45.455 0.00 0.00 41.69 4.85
1648 1705 2.126346 GGCACAAACGCAGGCATC 60.126 61.111 0.00 0.00 0.00 3.91
1681 1738 3.560481 TGAGAAGAATACGCGGAGTAGAG 59.440 47.826 12.47 0.00 38.94 2.43
1708 1765 2.124529 GGCAGGTGAGGCTTAGGC 60.125 66.667 0.00 0.00 37.82 3.93
1743 1800 8.593945 TTATTTGGCAGATTTCAAGGACTATT 57.406 30.769 0.00 0.00 0.00 1.73
1744 1801 9.693739 TTATTTGGCAGATTTCAAGGACTATTA 57.306 29.630 0.00 0.00 0.00 0.98
1745 1802 8.773033 ATTTGGCAGATTTCAAGGACTATTAT 57.227 30.769 0.00 0.00 0.00 1.28
1772 1829 2.154798 ATCGTCAGTGTGGTGTCCCG 62.155 60.000 0.00 0.00 0.00 5.14
1779 1836 0.034337 GTGTGGTGTCCCGTACATGT 59.966 55.000 2.69 2.69 41.10 3.21
1798 1859 6.757237 ACATGTGTTTTAATCTTGGCAATGA 58.243 32.000 0.00 0.82 0.00 2.57
1799 1860 7.388437 ACATGTGTTTTAATCTTGGCAATGAT 58.612 30.769 0.00 3.39 0.00 2.45
1800 1861 7.879160 ACATGTGTTTTAATCTTGGCAATGATT 59.121 29.630 20.66 20.66 36.87 2.57
1814 1938 4.176271 GCAATGATTAGGTTTCTGGTTGC 58.824 43.478 0.00 0.00 33.66 4.17
1827 1951 6.866770 GGTTTCTGGTTGCTAATTCTTTAACC 59.133 38.462 0.00 0.00 40.83 2.85
1854 1978 8.122952 CCAATTAAGAAATCGATACTTGTCACC 58.877 37.037 20.59 0.00 0.00 4.02
1922 2046 1.001706 GCTTTTGGTTCCGGTGTTCTC 60.002 52.381 0.00 0.00 0.00 2.87
1950 2074 3.769844 TCTAGTGAGTGGAATGGGAACTC 59.230 47.826 0.00 0.00 40.61 3.01
1951 2075 1.630878 AGTGAGTGGAATGGGAACTCC 59.369 52.381 0.00 0.00 39.69 3.85
1952 2076 1.630878 GTGAGTGGAATGGGAACTCCT 59.369 52.381 0.00 0.00 39.69 3.69
1953 2077 2.838202 GTGAGTGGAATGGGAACTCCTA 59.162 50.000 0.00 0.00 39.69 2.94
1954 2078 2.838202 TGAGTGGAATGGGAACTCCTAC 59.162 50.000 0.00 0.00 39.69 3.18
1955 2079 3.108376 GAGTGGAATGGGAACTCCTACT 58.892 50.000 0.00 0.00 35.36 2.57
2003 2127 1.587613 CGGTGTTGGTTTTGCGGTG 60.588 57.895 0.00 0.00 0.00 4.94
2105 2233 4.706962 AGTCCATCTTGCCACTAAATTTCC 59.293 41.667 0.00 0.00 0.00 3.13
2130 2258 5.531634 TGTTGATGAAAGGTCAATTTGCTC 58.468 37.500 0.00 0.00 37.84 4.26
2140 2268 3.005155 GGTCAATTTGCTCTTCTGTTGCT 59.995 43.478 0.00 0.00 0.00 3.91
2141 2269 4.216257 GGTCAATTTGCTCTTCTGTTGCTA 59.784 41.667 0.00 0.00 0.00 3.49
2143 2271 6.385033 GTCAATTTGCTCTTCTGTTGCTATT 58.615 36.000 0.00 0.00 0.00 1.73
2145 2273 7.061557 GTCAATTTGCTCTTCTGTTGCTATTTC 59.938 37.037 0.00 0.00 0.00 2.17
2146 2274 6.830873 ATTTGCTCTTCTGTTGCTATTTCT 57.169 33.333 0.00 0.00 0.00 2.52
2147 2275 5.618056 TTGCTCTTCTGTTGCTATTTCTG 57.382 39.130 0.00 0.00 0.00 3.02
2183 2336 2.939460 ACGGATAATGTTTTGCCTGC 57.061 45.000 0.00 0.00 0.00 4.85
2195 2348 0.040058 TTGCCTGCCATGTGGAGATT 59.960 50.000 2.55 0.00 37.39 2.40
2249 2402 9.436957 CATGACCAACTTTAAAGTAGATACAGT 57.563 33.333 20.83 10.43 38.57 3.55
2272 2425 7.874528 CAGTATGTGCTTCACCAGATCATTATA 59.125 37.037 0.00 0.00 32.73 0.98
2340 2493 2.684001 ATGGCTTGCATGGAAATGTG 57.316 45.000 0.00 0.00 0.00 3.21
2519 2674 5.825151 CCAGAAAACAGAAGAGAAGAACCTT 59.175 40.000 0.00 0.00 0.00 3.50
2555 2710 3.540314 ACTTTTTGTTTCATGGCAGCA 57.460 38.095 0.00 0.00 0.00 4.41
2613 2774 9.463443 GACTTTTGCTAAATTGTGAGTGTAAAT 57.537 29.630 0.00 0.00 0.00 1.40
2827 2992 2.746279 TTGGGCAGAGGTTCTCAAAA 57.254 45.000 0.00 0.00 32.06 2.44
3051 3221 6.818644 TCATTTACTCTACTTCATGTTGCCTC 59.181 38.462 0.00 0.00 0.00 4.70
3060 3230 2.009051 TCATGTTGCCTCATTAGTGCG 58.991 47.619 0.00 0.00 0.00 5.34
3130 3300 7.319646 TGATCAAATTAAAAGGTTTGGGATCG 58.680 34.615 0.00 0.00 36.30 3.69
3149 3319 4.159377 TCGTTCCACAAGAATTTCATGC 57.841 40.909 1.69 0.00 36.69 4.06
3259 3429 1.767759 AGCACAGTGAAAACTTGCCT 58.232 45.000 4.15 0.00 33.48 4.75
3260 3430 1.678101 AGCACAGTGAAAACTTGCCTC 59.322 47.619 4.15 0.00 33.48 4.70
3261 3431 1.678101 GCACAGTGAAAACTTGCCTCT 59.322 47.619 4.15 0.00 0.00 3.69
3262 3432 2.099756 GCACAGTGAAAACTTGCCTCTT 59.900 45.455 4.15 0.00 0.00 2.85
3336 3506 3.851098 AGCTATGTCCGTCTCTGTTTTC 58.149 45.455 0.00 0.00 0.00 2.29
3378 3548 1.668419 CCACTTAATCTGAAGGCGGG 58.332 55.000 0.00 0.00 0.00 6.13
3388 3558 2.028385 TCTGAAGGCGGGAGTAGTTTTC 60.028 50.000 0.00 0.00 0.00 2.29
3445 3622 7.755373 GCAGTTCCTTATTTGATTTCTGGTAAC 59.245 37.037 0.00 0.00 0.00 2.50
3515 3692 2.341846 TTGAGTTCCAACCCAGTCAC 57.658 50.000 0.00 0.00 0.00 3.67
3561 3738 6.141053 GCAATGTGTGATTTGTTGAATTTTGC 59.859 34.615 0.00 0.00 0.00 3.68
3572 3749 7.887996 TTGTTGAATTTTGCAATAGATCACC 57.112 32.000 0.00 0.00 0.00 4.02
3575 3752 5.879237 TGAATTTTGCAATAGATCACCGTC 58.121 37.500 0.00 0.00 0.00 4.79
3599 3778 7.491048 GTCTTTTGGTAAAAGTCTGCAATCAAA 59.509 33.333 12.25 0.00 46.18 2.69
3629 3808 3.407424 TCTGTTGAGGTGAATCTGTGG 57.593 47.619 0.00 0.00 0.00 4.17
3636 3815 1.355381 AGGTGAATCTGTGGGCATTCA 59.645 47.619 0.00 0.00 36.80 2.57
3789 3971 2.159014 TGTTGTTGGTAGCGTTCTGAGT 60.159 45.455 0.00 0.00 0.00 3.41
3794 3976 1.104630 GGTAGCGTTCTGAGTAGCCT 58.895 55.000 0.00 0.00 0.00 4.58
3795 3977 1.477295 GGTAGCGTTCTGAGTAGCCTT 59.523 52.381 0.00 0.00 0.00 4.35
3797 3979 1.257743 AGCGTTCTGAGTAGCCTTGA 58.742 50.000 0.00 0.00 0.00 3.02
3798 3980 1.203523 AGCGTTCTGAGTAGCCTTGAG 59.796 52.381 0.00 0.00 0.00 3.02
3799 3981 1.067495 GCGTTCTGAGTAGCCTTGAGT 60.067 52.381 0.00 0.00 0.00 3.41
3800 3982 2.163815 GCGTTCTGAGTAGCCTTGAGTA 59.836 50.000 0.00 0.00 0.00 2.59
3801 3983 3.732471 GCGTTCTGAGTAGCCTTGAGTAG 60.732 52.174 0.00 0.00 0.00 2.57
3802 3984 3.732471 CGTTCTGAGTAGCCTTGAGTAGC 60.732 52.174 0.00 0.00 0.00 3.58
3803 3985 3.374042 TCTGAGTAGCCTTGAGTAGCT 57.626 47.619 0.00 0.00 43.20 3.32
3804 3986 3.702792 TCTGAGTAGCCTTGAGTAGCTT 58.297 45.455 0.00 0.00 40.56 3.74
3805 3987 3.445450 TCTGAGTAGCCTTGAGTAGCTTG 59.555 47.826 0.00 0.00 40.56 4.01
3806 3988 3.165875 TGAGTAGCCTTGAGTAGCTTGT 58.834 45.455 0.00 0.00 40.56 3.16
3807 3989 3.578716 TGAGTAGCCTTGAGTAGCTTGTT 59.421 43.478 0.00 0.00 40.56 2.83
3808 3990 4.040461 TGAGTAGCCTTGAGTAGCTTGTTT 59.960 41.667 0.00 0.00 40.56 2.83
3809 3991 4.319177 AGTAGCCTTGAGTAGCTTGTTTG 58.681 43.478 0.00 0.00 40.56 2.93
3810 3992 2.508526 AGCCTTGAGTAGCTTGTTTGG 58.491 47.619 0.00 0.00 35.22 3.28
3811 3993 2.158608 AGCCTTGAGTAGCTTGTTTGGT 60.159 45.455 0.00 0.00 35.22 3.67
3812 3994 2.623416 GCCTTGAGTAGCTTGTTTGGTT 59.377 45.455 0.00 0.00 0.00 3.67
3813 3995 3.818773 GCCTTGAGTAGCTTGTTTGGTTA 59.181 43.478 0.00 0.00 0.00 2.85
3814 3996 4.320275 GCCTTGAGTAGCTTGTTTGGTTAC 60.320 45.833 0.00 0.00 0.00 2.50
3815 3997 5.063880 CCTTGAGTAGCTTGTTTGGTTACT 58.936 41.667 0.00 0.00 34.36 2.24
3816 3998 6.228258 CCTTGAGTAGCTTGTTTGGTTACTA 58.772 40.000 0.00 0.00 32.42 1.82
3817 3999 6.369065 CCTTGAGTAGCTTGTTTGGTTACTAG 59.631 42.308 0.00 0.00 32.42 2.57
3818 4000 6.659745 TGAGTAGCTTGTTTGGTTACTAGA 57.340 37.500 0.00 0.00 32.42 2.43
3819 4001 7.058023 TGAGTAGCTTGTTTGGTTACTAGAA 57.942 36.000 0.00 0.00 32.42 2.10
3820 4002 6.927381 TGAGTAGCTTGTTTGGTTACTAGAAC 59.073 38.462 0.00 0.00 32.42 3.01
3821 4003 7.063934 AGTAGCTTGTTTGGTTACTAGAACT 57.936 36.000 0.00 0.00 30.94 3.01
3822 4004 8.186709 AGTAGCTTGTTTGGTTACTAGAACTA 57.813 34.615 0.00 0.00 30.94 2.24
3823 4005 8.813951 AGTAGCTTGTTTGGTTACTAGAACTAT 58.186 33.333 0.00 0.00 30.94 2.12
3824 4006 9.085250 GTAGCTTGTTTGGTTACTAGAACTATC 57.915 37.037 0.00 0.00 0.00 2.08
3825 4007 7.908453 AGCTTGTTTGGTTACTAGAACTATCT 58.092 34.615 0.00 0.00 39.82 1.98
3826 4008 8.376270 AGCTTGTTTGGTTACTAGAACTATCTT 58.624 33.333 0.00 0.00 37.10 2.40
3827 4009 9.000486 GCTTGTTTGGTTACTAGAACTATCTTT 58.000 33.333 0.00 0.00 37.10 2.52
3848 4030 4.354071 TTTTTCTTTTGGCTTTGCTTGC 57.646 36.364 0.00 0.00 0.00 4.01
3849 4031 1.569708 TTCTTTTGGCTTTGCTTGCG 58.430 45.000 0.00 0.00 0.00 4.85
3850 4032 0.249405 TCTTTTGGCTTTGCTTGCGG 60.249 50.000 0.00 0.00 0.00 5.69
3851 4033 1.223417 CTTTTGGCTTTGCTTGCGGG 61.223 55.000 0.00 0.00 0.00 6.13
3852 4034 3.805891 TTTGGCTTTGCTTGCGGGC 62.806 57.895 0.00 0.00 0.00 6.13
3854 4036 4.729856 GGCTTTGCTTGCGGGCTG 62.730 66.667 2.59 0.00 0.00 4.85
3855 4037 3.673484 GCTTTGCTTGCGGGCTGA 61.673 61.111 0.00 0.00 0.00 4.26
3856 4038 2.564975 CTTTGCTTGCGGGCTGAG 59.435 61.111 0.00 0.00 0.00 3.35
3857 4039 2.203337 TTTGCTTGCGGGCTGAGT 60.203 55.556 0.00 0.00 0.00 3.41
3858 4040 1.799258 CTTTGCTTGCGGGCTGAGTT 61.799 55.000 0.00 0.00 0.00 3.01
3859 4041 1.795170 TTTGCTTGCGGGCTGAGTTC 61.795 55.000 0.00 0.00 0.00 3.01
3860 4042 2.669569 GCTTGCGGGCTGAGTTCA 60.670 61.111 0.00 0.00 0.00 3.18
3861 4043 2.684843 GCTTGCGGGCTGAGTTCAG 61.685 63.158 0.00 4.77 46.40 3.02
3862 4044 1.004560 CTTGCGGGCTGAGTTCAGA 60.005 57.895 13.13 0.00 46.59 3.27
3863 4045 0.392193 CTTGCGGGCTGAGTTCAGAT 60.392 55.000 13.13 0.00 46.59 2.90
3864 4046 0.901827 TTGCGGGCTGAGTTCAGATA 59.098 50.000 13.13 0.00 46.59 1.98
3865 4047 1.123077 TGCGGGCTGAGTTCAGATAT 58.877 50.000 13.13 0.00 46.59 1.63
3866 4048 1.486310 TGCGGGCTGAGTTCAGATATT 59.514 47.619 13.13 0.00 46.59 1.28
3867 4049 2.092968 TGCGGGCTGAGTTCAGATATTT 60.093 45.455 13.13 0.00 46.59 1.40
3868 4050 2.289002 GCGGGCTGAGTTCAGATATTTG 59.711 50.000 13.13 0.00 46.59 2.32
3869 4051 2.289002 CGGGCTGAGTTCAGATATTTGC 59.711 50.000 13.13 0.00 46.59 3.68
3870 4052 3.282021 GGGCTGAGTTCAGATATTTGCA 58.718 45.455 13.13 0.00 46.59 4.08
3871 4053 3.314635 GGGCTGAGTTCAGATATTTGCAG 59.685 47.826 13.13 0.00 46.59 4.41
3872 4054 3.944015 GGCTGAGTTCAGATATTTGCAGT 59.056 43.478 13.13 0.00 46.59 4.40
3873 4055 5.118990 GGCTGAGTTCAGATATTTGCAGTA 58.881 41.667 13.13 0.00 46.59 2.74
3874 4056 5.586243 GGCTGAGTTCAGATATTTGCAGTAA 59.414 40.000 13.13 0.00 46.59 2.24
3875 4057 6.457528 GGCTGAGTTCAGATATTTGCAGTAAC 60.458 42.308 13.13 0.00 46.59 2.50
3876 4058 6.457528 GCTGAGTTCAGATATTTGCAGTAACC 60.458 42.308 13.13 0.00 46.59 2.85
3877 4059 6.472016 TGAGTTCAGATATTTGCAGTAACCA 58.528 36.000 0.00 0.00 0.00 3.67
3878 4060 6.939730 TGAGTTCAGATATTTGCAGTAACCAA 59.060 34.615 0.00 0.00 0.00 3.67
3879 4061 7.446931 TGAGTTCAGATATTTGCAGTAACCAAA 59.553 33.333 0.00 0.00 36.70 3.28
3880 4062 7.593825 AGTTCAGATATTTGCAGTAACCAAAC 58.406 34.615 0.00 0.00 35.27 2.93
3881 4063 6.176975 TCAGATATTTGCAGTAACCAAACG 57.823 37.500 0.00 0.00 35.27 3.60
3882 4064 5.935206 TCAGATATTTGCAGTAACCAAACGA 59.065 36.000 0.00 0.00 35.27 3.85
3883 4065 6.428465 TCAGATATTTGCAGTAACCAAACGAA 59.572 34.615 0.00 0.00 35.27 3.85
3884 4066 7.041030 TCAGATATTTGCAGTAACCAAACGAAA 60.041 33.333 0.00 0.00 35.27 3.46
3885 4067 7.593273 CAGATATTTGCAGTAACCAAACGAAAA 59.407 33.333 0.00 0.00 35.27 2.29
3886 4068 8.303876 AGATATTTGCAGTAACCAAACGAAAAT 58.696 29.630 0.00 0.00 35.27 1.82
3887 4069 9.562583 GATATTTGCAGTAACCAAACGAAAATA 57.437 29.630 0.00 0.00 35.27 1.40
3889 4071 7.861176 TTTGCAGTAACCAAACGAAAATATC 57.139 32.000 0.00 0.00 0.00 1.63
3890 4072 6.811253 TGCAGTAACCAAACGAAAATATCT 57.189 33.333 0.00 0.00 0.00 1.98
3891 4073 6.607689 TGCAGTAACCAAACGAAAATATCTG 58.392 36.000 0.00 0.00 0.00 2.90
3892 4074 6.428465 TGCAGTAACCAAACGAAAATATCTGA 59.572 34.615 0.00 0.00 0.00 3.27
3893 4075 7.041030 TGCAGTAACCAAACGAAAATATCTGAA 60.041 33.333 0.00 0.00 0.00 3.02
3894 4076 7.481798 GCAGTAACCAAACGAAAATATCTGAAG 59.518 37.037 0.00 0.00 0.00 3.02
3895 4077 8.504005 CAGTAACCAAACGAAAATATCTGAAGT 58.496 33.333 0.00 0.00 0.00 3.01
3896 4078 8.718734 AGTAACCAAACGAAAATATCTGAAGTC 58.281 33.333 0.00 0.00 0.00 3.01
3897 4079 7.504924 AACCAAACGAAAATATCTGAAGTCA 57.495 32.000 0.00 0.00 0.00 3.41
3898 4080 7.133891 ACCAAACGAAAATATCTGAAGTCAG 57.866 36.000 1.65 1.65 45.08 3.51
3899 4081 6.024049 CCAAACGAAAATATCTGAAGTCAGC 58.976 40.000 3.30 0.00 43.46 4.26
3900 4082 5.803020 AACGAAAATATCTGAAGTCAGCC 57.197 39.130 3.30 0.00 43.46 4.85
3901 4083 4.192317 ACGAAAATATCTGAAGTCAGCCC 58.808 43.478 3.30 0.00 43.46 5.19
3902 4084 3.246226 CGAAAATATCTGAAGTCAGCCCG 59.754 47.826 3.30 0.00 43.46 6.13
3903 4085 2.246719 AATATCTGAAGTCAGCCCGC 57.753 50.000 3.30 0.00 43.46 6.13
3904 4086 1.123077 ATATCTGAAGTCAGCCCGCA 58.877 50.000 3.30 0.00 43.46 5.69
3905 4087 0.901827 TATCTGAAGTCAGCCCGCAA 59.098 50.000 3.30 0.00 43.46 4.85
3906 4088 0.392193 ATCTGAAGTCAGCCCGCAAG 60.392 55.000 3.30 0.00 43.46 4.01
3907 4089 2.669569 TGAAGTCAGCCCGCAAGC 60.670 61.111 0.00 0.00 0.00 4.01
3908 4090 2.669569 GAAGTCAGCCCGCAAGCA 60.670 61.111 0.00 0.00 34.23 3.91
3909 4091 2.203337 AAGTCAGCCCGCAAGCAA 60.203 55.556 0.00 0.00 34.23 3.91
3910 4092 1.795170 GAAGTCAGCCCGCAAGCAAA 61.795 55.000 0.00 0.00 34.23 3.68
3911 4093 1.391157 AAGTCAGCCCGCAAGCAAAA 61.391 50.000 0.00 0.00 34.23 2.44
3912 4094 1.661509 GTCAGCCCGCAAGCAAAAC 60.662 57.895 0.00 0.00 34.23 2.43
3913 4095 2.730604 CAGCCCGCAAGCAAAACG 60.731 61.111 0.00 0.00 34.23 3.60
3914 4096 2.904866 AGCCCGCAAGCAAAACGA 60.905 55.556 0.00 0.00 34.23 3.85
3915 4097 2.026879 GCCCGCAAGCAAAACGAA 59.973 55.556 0.00 0.00 0.00 3.85
3916 4098 1.590259 GCCCGCAAGCAAAACGAAA 60.590 52.632 0.00 0.00 0.00 3.46
3917 4099 1.148759 GCCCGCAAGCAAAACGAAAA 61.149 50.000 0.00 0.00 0.00 2.29
3918 4100 0.574922 CCCGCAAGCAAAACGAAAAC 59.425 50.000 0.00 0.00 0.00 2.43
3919 4101 1.272781 CCGCAAGCAAAACGAAAACA 58.727 45.000 0.00 0.00 0.00 2.83
3920 4102 1.255084 CCGCAAGCAAAACGAAAACAG 59.745 47.619 0.00 0.00 0.00 3.16
3921 4103 2.181205 CGCAAGCAAAACGAAAACAGA 58.819 42.857 0.00 0.00 0.00 3.41
3922 4104 2.214020 CGCAAGCAAAACGAAAACAGAG 59.786 45.455 0.00 0.00 0.00 3.35
3923 4105 3.434637 GCAAGCAAAACGAAAACAGAGA 58.565 40.909 0.00 0.00 0.00 3.10
3924 4106 4.044426 GCAAGCAAAACGAAAACAGAGAT 58.956 39.130 0.00 0.00 0.00 2.75
3925 4107 5.212194 GCAAGCAAAACGAAAACAGAGATA 58.788 37.500 0.00 0.00 0.00 1.98
3926 4108 5.340667 GCAAGCAAAACGAAAACAGAGATAG 59.659 40.000 0.00 0.00 0.00 2.08
3927 4109 6.430451 CAAGCAAAACGAAAACAGAGATAGT 58.570 36.000 0.00 0.00 0.00 2.12
3928 4110 6.619801 AGCAAAACGAAAACAGAGATAGTT 57.380 33.333 0.00 0.00 0.00 2.24
3929 4111 6.659776 AGCAAAACGAAAACAGAGATAGTTC 58.340 36.000 0.00 0.00 0.00 3.01
3930 4112 5.851703 GCAAAACGAAAACAGAGATAGTTCC 59.148 40.000 0.00 0.00 0.00 3.62
3931 4113 6.512741 GCAAAACGAAAACAGAGATAGTTCCA 60.513 38.462 0.00 0.00 0.00 3.53
3932 4114 6.787085 AAACGAAAACAGAGATAGTTCCAG 57.213 37.500 0.00 0.00 0.00 3.86
3933 4115 5.470047 ACGAAAACAGAGATAGTTCCAGT 57.530 39.130 0.00 0.00 0.00 4.00
3934 4116 6.585695 ACGAAAACAGAGATAGTTCCAGTA 57.414 37.500 0.00 0.00 0.00 2.74
3935 4117 6.989659 ACGAAAACAGAGATAGTTCCAGTAA 58.010 36.000 0.00 0.00 0.00 2.24
3936 4118 6.867293 ACGAAAACAGAGATAGTTCCAGTAAC 59.133 38.462 0.00 0.00 38.46 2.50
3937 4119 6.310711 CGAAAACAGAGATAGTTCCAGTAACC 59.689 42.308 0.00 0.00 39.03 2.85
3938 4120 6.681729 AAACAGAGATAGTTCCAGTAACCA 57.318 37.500 0.00 0.00 39.03 3.67
3939 4121 6.681729 AACAGAGATAGTTCCAGTAACCAA 57.318 37.500 0.00 0.00 39.03 3.67
3940 4122 6.681729 ACAGAGATAGTTCCAGTAACCAAA 57.318 37.500 0.00 0.00 39.03 3.28
3941 4123 6.465084 ACAGAGATAGTTCCAGTAACCAAAC 58.535 40.000 0.00 0.00 39.03 2.93
3942 4124 6.042781 ACAGAGATAGTTCCAGTAACCAAACA 59.957 38.462 0.00 0.00 39.03 2.83
3943 4125 6.934645 CAGAGATAGTTCCAGTAACCAAACAA 59.065 38.462 0.00 0.00 39.03 2.83
3944 4126 7.118390 CAGAGATAGTTCCAGTAACCAAACAAG 59.882 40.741 0.00 0.00 39.03 3.16
3945 4127 5.705905 AGATAGTTCCAGTAACCAAACAAGC 59.294 40.000 0.00 0.00 39.03 4.01
3946 4128 3.626930 AGTTCCAGTAACCAAACAAGCA 58.373 40.909 0.00 0.00 39.03 3.91
3947 4129 4.020543 AGTTCCAGTAACCAAACAAGCAA 58.979 39.130 0.00 0.00 39.03 3.91
3948 4130 4.109766 GTTCCAGTAACCAAACAAGCAAC 58.890 43.478 0.00 0.00 31.38 4.17
3949 4131 3.626930 TCCAGTAACCAAACAAGCAACT 58.373 40.909 0.00 0.00 0.00 3.16
3950 4132 4.783055 TCCAGTAACCAAACAAGCAACTA 58.217 39.130 0.00 0.00 0.00 2.24
3951 4133 5.381757 TCCAGTAACCAAACAAGCAACTAT 58.618 37.500 0.00 0.00 0.00 2.12
3952 4134 6.535540 TCCAGTAACCAAACAAGCAACTATA 58.464 36.000 0.00 0.00 0.00 1.31
3953 4135 6.653320 TCCAGTAACCAAACAAGCAACTATAG 59.347 38.462 0.00 0.00 0.00 1.31
3954 4136 6.430000 CCAGTAACCAAACAAGCAACTATAGT 59.570 38.462 0.00 0.00 0.00 2.12
3955 4137 7.040686 CCAGTAACCAAACAAGCAACTATAGTT 60.041 37.037 12.50 12.50 39.12 2.24
3956 4138 8.349983 CAGTAACCAAACAAGCAACTATAGTTT 58.650 33.333 15.60 0.00 35.83 2.66
3957 4139 8.909923 AGTAACCAAACAAGCAACTATAGTTTT 58.090 29.630 15.60 6.09 35.83 2.43
3958 4140 9.524106 GTAACCAAACAAGCAACTATAGTTTTT 57.476 29.630 15.60 10.32 35.83 1.94
3974 4156 0.387565 TTTTTGGTTTCTGCCGAGGC 59.612 50.000 7.26 7.26 42.35 4.70
3984 4166 3.257933 GCCGAGGCAGTGTTTCTG 58.742 61.111 9.58 0.00 46.12 3.02
3991 4173 3.359002 CAGTGTTTCTGCTGGCCC 58.641 61.111 0.00 0.00 37.36 5.80
3992 4174 1.228367 CAGTGTTTCTGCTGGCCCT 60.228 57.895 0.00 0.00 37.36 5.19
3993 4175 1.073897 AGTGTTTCTGCTGGCCCTC 59.926 57.895 0.00 0.00 0.00 4.30
3994 4176 1.973812 GTGTTTCTGCTGGCCCTCC 60.974 63.158 0.00 0.00 0.00 4.30
3995 4177 2.747855 GTTTCTGCTGGCCCTCCG 60.748 66.667 0.00 0.00 34.14 4.63
3996 4178 4.722700 TTTCTGCTGGCCCTCCGC 62.723 66.667 0.00 0.00 34.14 5.54
4002 4184 4.809496 CTGGCCCTCCGCATGCTT 62.809 66.667 17.13 0.00 40.31 3.91
4005 4187 2.124736 GCCCTCCGCATGCTTGTA 60.125 61.111 17.13 0.00 37.47 2.41
4006 4188 1.748879 GCCCTCCGCATGCTTGTAA 60.749 57.895 17.13 0.00 37.47 2.41
4007 4189 1.103398 GCCCTCCGCATGCTTGTAAT 61.103 55.000 17.13 0.00 37.47 1.89
4008 4190 1.392589 CCCTCCGCATGCTTGTAATT 58.607 50.000 17.13 0.00 0.00 1.40
4009 4191 1.066002 CCCTCCGCATGCTTGTAATTG 59.934 52.381 17.13 0.00 0.00 2.32
4010 4192 2.016318 CCTCCGCATGCTTGTAATTGA 58.984 47.619 17.13 0.00 0.00 2.57
4011 4193 2.620115 CCTCCGCATGCTTGTAATTGAT 59.380 45.455 17.13 0.00 0.00 2.57
4012 4194 3.549423 CCTCCGCATGCTTGTAATTGATG 60.549 47.826 17.13 0.00 0.00 3.07
4013 4195 3.277715 TCCGCATGCTTGTAATTGATGA 58.722 40.909 17.13 0.00 0.00 2.92
4014 4196 3.884693 TCCGCATGCTTGTAATTGATGAT 59.115 39.130 17.13 0.00 0.00 2.45
4015 4197 5.062528 TCCGCATGCTTGTAATTGATGATA 58.937 37.500 17.13 0.00 0.00 2.15
4016 4198 5.706833 TCCGCATGCTTGTAATTGATGATAT 59.293 36.000 17.13 0.00 0.00 1.63
4017 4199 5.798434 CCGCATGCTTGTAATTGATGATATG 59.202 40.000 17.13 0.00 0.00 1.78
4018 4200 5.798434 CGCATGCTTGTAATTGATGATATGG 59.202 40.000 17.13 0.00 0.00 2.74
4019 4201 6.569035 CGCATGCTTGTAATTGATGATATGGT 60.569 38.462 17.13 0.00 0.00 3.55
4020 4202 7.149973 GCATGCTTGTAATTGATGATATGGTT 58.850 34.615 11.37 0.00 0.00 3.67
4021 4203 7.654520 GCATGCTTGTAATTGATGATATGGTTT 59.345 33.333 11.37 0.00 0.00 3.27
4022 4204 9.188588 CATGCTTGTAATTGATGATATGGTTTC 57.811 33.333 0.00 0.00 0.00 2.78
4023 4205 7.416817 TGCTTGTAATTGATGATATGGTTTCG 58.583 34.615 0.00 0.00 0.00 3.46
4050 4232 1.688187 GGAAAGGAGCCGGGGTCTA 60.688 63.158 24.13 0.00 0.00 2.59
4051 4233 1.521141 GAAAGGAGCCGGGGTCTAC 59.479 63.158 24.13 9.97 0.00 2.59
4091 5522 3.512680 AGATTTTAGCTCGACGAACCTG 58.487 45.455 0.00 0.00 0.00 4.00
4109 5540 3.181455 ACCTGATCACGCCATTGCTTATA 60.181 43.478 0.00 0.00 34.43 0.98
4111 5542 4.060900 CTGATCACGCCATTGCTTATAGT 58.939 43.478 0.00 0.00 34.43 2.12
4114 5545 3.194861 TCACGCCATTGCTTATAGTGAC 58.805 45.455 0.00 0.00 33.00 3.67
4119 5550 3.444916 CCATTGCTTATAGTGACGTCGT 58.555 45.455 11.62 0.00 0.00 4.34
4145 5576 3.181466 ACGGCTGTGCATAGATATTGTCA 60.181 43.478 15.47 0.00 0.00 3.58
4151 5582 5.368145 TGTGCATAGATATTGTCAACTCCC 58.632 41.667 0.00 0.00 0.00 4.30
4184 5615 1.271102 GACACCAGATCGCTAGGGATC 59.729 57.143 32.14 32.14 42.52 3.36
4190 5621 0.959553 GATCGCTAGGGATCGGAACA 59.040 55.000 27.88 0.00 34.07 3.18
4206 5637 2.767960 GGAACAGGCCATTGGATCAAAT 59.232 45.455 5.01 0.00 0.00 2.32
4226 5657 2.837498 TGCATGACAGGATATTGGTCG 58.163 47.619 0.00 0.00 34.32 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.009033 TCCTTAATGAGGTCCACTGGTTG 59.991 47.826 0.00 0.00 46.39 3.77
9 10 6.485830 TCTATTCCTTAATGAGGTCCACTG 57.514 41.667 0.00 0.00 46.39 3.66
11 12 7.339482 ACTTTCTATTCCTTAATGAGGTCCAC 58.661 38.462 0.00 0.00 46.39 4.02
56 57 5.317733 AGTTGGAGTAGAAAGTCGAGATG 57.682 43.478 0.00 0.00 0.00 2.90
62 63 6.261158 AGCTGAAAAAGTTGGAGTAGAAAGTC 59.739 38.462 0.00 0.00 0.00 3.01
68 69 8.188139 TGTAAAAAGCTGAAAAAGTTGGAGTAG 58.812 33.333 0.00 0.00 0.00 2.57
69 70 8.057536 TGTAAAAAGCTGAAAAAGTTGGAGTA 57.942 30.769 0.00 0.00 0.00 2.59
112 113 2.626780 GGAGGCGGGTGCTTGAAAC 61.627 63.158 0.00 0.00 42.25 2.78
113 114 2.282180 GGAGGCGGGTGCTTGAAA 60.282 61.111 0.00 0.00 42.25 2.69
115 116 4.020617 CAGGAGGCGGGTGCTTGA 62.021 66.667 0.00 0.00 42.25 3.02
145 146 5.234466 AGAAATAGATTCGGATGGGGAAG 57.766 43.478 0.00 0.00 43.15 3.46
148 149 3.584848 AGGAGAAATAGATTCGGATGGGG 59.415 47.826 0.00 0.00 43.15 4.96
156 157 6.090483 TCGGATGTCAGGAGAAATAGATTC 57.910 41.667 0.00 0.00 38.39 2.52
159 160 4.524714 GGATCGGATGTCAGGAGAAATAGA 59.475 45.833 0.00 0.00 0.00 1.98
172 173 1.496060 TGCCTTGTAGGATCGGATGT 58.504 50.000 0.00 0.00 37.67 3.06
173 174 2.487934 CTTGCCTTGTAGGATCGGATG 58.512 52.381 0.00 0.00 37.67 3.51
176 177 1.154205 CGCTTGCCTTGTAGGATCGG 61.154 60.000 0.00 0.00 37.67 4.18
192 193 4.431131 CCAAGGTGATGCCCCGCT 62.431 66.667 0.00 0.00 38.26 5.52
228 229 5.765677 CGTCACTATGAGGAAGAGATAAGGA 59.234 44.000 0.00 0.00 34.44 3.36
240 241 2.186076 GCGAAAGACGTCACTATGAGG 58.814 52.381 19.50 0.00 44.60 3.86
287 288 8.328146 GCAACTGAAATAACAAAAAGAGAAACC 58.672 33.333 0.00 0.00 0.00 3.27
307 308 3.051081 AGACCAAGCTAAGAGCAACTG 57.949 47.619 0.64 0.00 45.56 3.16
495 504 6.470235 GTCACACATTTTATTAGATGCTGCAC 59.530 38.462 3.57 0.00 0.00 4.57
496 505 6.404623 GGTCACACATTTTATTAGATGCTGCA 60.405 38.462 4.13 4.13 0.00 4.41
497 506 5.973565 GGTCACACATTTTATTAGATGCTGC 59.026 40.000 0.00 0.00 0.00 5.25
498 507 6.319658 AGGGTCACACATTTTATTAGATGCTG 59.680 38.462 0.00 0.00 0.00 4.41
500 509 6.699575 AGGGTCACACATTTTATTAGATGC 57.300 37.500 0.00 0.00 0.00 3.91
509 518 9.454859 TGAATTTTAAAAAGGGTCACACATTTT 57.545 25.926 4.44 0.00 0.00 1.82
510 519 9.625747 ATGAATTTTAAAAAGGGTCACACATTT 57.374 25.926 4.44 0.00 0.00 2.32
511 520 9.054922 CATGAATTTTAAAAAGGGTCACACATT 57.945 29.630 4.44 0.00 0.00 2.71
512 521 8.428063 TCATGAATTTTAAAAAGGGTCACACAT 58.572 29.630 4.44 0.00 0.00 3.21
513 522 7.786030 TCATGAATTTTAAAAAGGGTCACACA 58.214 30.769 4.44 0.00 0.00 3.72
514 523 8.547894 GTTCATGAATTTTAAAAAGGGTCACAC 58.452 33.333 12.12 2.50 0.00 3.82
515 524 8.260818 TGTTCATGAATTTTAAAAAGGGTCACA 58.739 29.630 12.12 0.00 0.00 3.58
516 525 8.655651 TGTTCATGAATTTTAAAAAGGGTCAC 57.344 30.769 12.12 0.00 0.00 3.67
517 526 9.844257 AATGTTCATGAATTTTAAAAAGGGTCA 57.156 25.926 12.12 7.01 0.00 4.02
533 542 9.984190 TTCAATGATTCTCAAAAATGTTCATGA 57.016 25.926 0.00 0.00 0.00 3.07
535 544 9.767228 TGTTCAATGATTCTCAAAAATGTTCAT 57.233 25.926 0.00 0.00 0.00 2.57
536 545 9.767228 ATGTTCAATGATTCTCAAAAATGTTCA 57.233 25.926 0.00 0.00 0.00 3.18
634 644 8.036273 AGAATGTACACGGATTAAAATCGTTT 57.964 30.769 0.00 0.00 36.27 3.60
751 761 6.172630 TGCTGCACTCACAGATTAATAGAAA 58.827 36.000 0.00 0.00 40.25 2.52
764 774 0.321919 TTGATCCCTGCTGCACTCAC 60.322 55.000 0.00 0.00 0.00 3.51
768 778 0.462581 TCGATTGATCCCTGCTGCAC 60.463 55.000 0.00 0.00 0.00 4.57
856 866 1.281899 GCAAATAGCGCTCTCTTCGT 58.718 50.000 16.34 0.00 0.00 3.85
893 903 1.776662 AGCGTAGGATAGTTGCCAGA 58.223 50.000 0.00 0.00 0.00 3.86
925 935 4.296621 AGAAAACGGCCAACCTATACTT 57.703 40.909 2.24 0.00 0.00 2.24
928 938 4.773013 CCTTAGAAAACGGCCAACCTATA 58.227 43.478 2.24 0.00 0.00 1.31
929 939 3.617284 CCTTAGAAAACGGCCAACCTAT 58.383 45.455 2.24 0.00 0.00 2.57
930 940 2.876892 GCCTTAGAAAACGGCCAACCTA 60.877 50.000 2.24 0.00 37.86 3.08
931 941 1.905637 CCTTAGAAAACGGCCAACCT 58.094 50.000 2.24 0.00 0.00 3.50
932 942 0.242825 GCCTTAGAAAACGGCCAACC 59.757 55.000 2.24 0.00 37.86 3.77
933 943 0.109919 CGCCTTAGAAAACGGCCAAC 60.110 55.000 2.24 0.00 40.70 3.77
934 944 1.858372 GCGCCTTAGAAAACGGCCAA 61.858 55.000 2.24 0.00 40.70 4.52
975 985 0.105778 CCGAATCCCCTCTGCTTCTC 59.894 60.000 0.00 0.00 0.00 2.87
976 986 0.618968 ACCGAATCCCCTCTGCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
1049 1075 3.458163 CTAGGAGGTTGCGGCCGA 61.458 66.667 33.48 11.82 0.00 5.54
1061 1087 1.227664 CCGCTCCACTCCTCTAGGA 59.772 63.158 0.00 0.00 43.08 2.94
1062 1088 1.830408 CCCGCTCCACTCCTCTAGG 60.830 68.421 0.00 0.00 0.00 3.02
1083 1109 2.268920 GCCTCAATCGCCCTCACA 59.731 61.111 0.00 0.00 0.00 3.58
1307 1333 3.257873 CAGAGGAGGATGCTGTATGTAGG 59.742 52.174 0.00 0.00 36.27 3.18
1308 1334 3.305950 GCAGAGGAGGATGCTGTATGTAG 60.306 52.174 0.00 0.00 36.27 2.74
1347 1376 8.578448 TCATGGACAATTAATTCATCAACAGA 57.422 30.769 0.00 0.00 0.00 3.41
1379 1408 4.622313 TCCAATCGTACACACAATCGTTAC 59.378 41.667 0.00 0.00 0.00 2.50
1388 1417 4.742438 AACATGTTCCAATCGTACACAC 57.258 40.909 4.92 0.00 0.00 3.82
1427 1456 8.837788 TGACTATAGATCACAAGCCAATATTG 57.162 34.615 6.78 8.58 0.00 1.90
1494 1545 0.958091 TCTGTCCGGCCAACATTTTG 59.042 50.000 2.24 0.00 0.00 2.44
1507 1560 8.133024 ACTTAGGATTCATGAGATATCTGTCC 57.867 38.462 10.74 7.67 0.00 4.02
1539 1596 2.756760 GCTGGTGACCATCATGTGAAAT 59.243 45.455 4.03 0.00 30.82 2.17
1575 1632 0.322816 CCCAGCAGCTAAAGCCTGAA 60.323 55.000 0.00 0.00 43.38 3.02
1576 1633 1.300963 CCCAGCAGCTAAAGCCTGA 59.699 57.895 0.00 0.00 43.38 3.86
1594 1651 4.440127 CGGGCTTGCACCAATGGC 62.440 66.667 0.00 0.00 0.00 4.40
1597 1654 2.916703 TTGCGGGCTTGCACCAAT 60.917 55.556 4.49 0.00 46.25 3.16
1633 1690 0.806868 ATGAGATGCCTGCGTTTGTG 59.193 50.000 0.00 0.00 0.00 3.33
1648 1705 6.345329 CGCGTATTCTTCTCATAACACATGAG 60.345 42.308 0.00 7.75 45.08 2.90
1666 1723 2.048444 TGTCCTCTACTCCGCGTATT 57.952 50.000 4.92 0.00 0.00 1.89
1681 1738 2.262774 CTCACCTGCCCTGGATGTCC 62.263 65.000 0.00 0.00 0.00 4.02
1743 1800 6.489022 ACACCACACTGACGATATAAGCTATA 59.511 38.462 0.00 0.00 0.00 1.31
1744 1801 5.302059 ACACCACACTGACGATATAAGCTAT 59.698 40.000 0.00 0.00 0.00 2.97
1745 1802 4.643334 ACACCACACTGACGATATAAGCTA 59.357 41.667 0.00 0.00 0.00 3.32
1756 1813 0.319297 GTACGGGACACCACACTGAC 60.319 60.000 0.00 0.00 36.13 3.51
1763 1820 0.759959 AACACATGTACGGGACACCA 59.240 50.000 0.00 0.00 42.17 4.17
1772 1829 7.812191 TCATTGCCAAGATTAAAACACATGTAC 59.188 33.333 0.00 0.00 0.00 2.90
1779 1836 8.133024 ACCTAATCATTGCCAAGATTAAAACA 57.867 30.769 9.22 0.00 36.57 2.83
1798 1859 8.422577 AAAGAATTAGCAACCAGAAACCTAAT 57.577 30.769 0.00 0.00 31.91 1.73
1799 1860 7.833285 AAAGAATTAGCAACCAGAAACCTAA 57.167 32.000 0.00 0.00 0.00 2.69
1800 1861 8.789762 GTTAAAGAATTAGCAACCAGAAACCTA 58.210 33.333 0.00 0.00 0.00 3.08
1827 1951 8.122952 GTGACAAGTATCGATTTCTTAATTGGG 58.877 37.037 1.71 0.00 0.00 4.12
1854 1978 7.228108 ACAAATAGGATGTCTGTCATGCATAAG 59.772 37.037 0.00 0.00 45.37 1.73
1922 2046 4.099266 CCCATTCCACTCACTAGAGAGAAG 59.901 50.000 22.12 13.74 44.98 2.85
1950 2074 0.597072 GCGACCGGATTAGGAGTAGG 59.403 60.000 9.46 0.00 34.73 3.18
1951 2075 1.315690 TGCGACCGGATTAGGAGTAG 58.684 55.000 9.46 0.00 34.73 2.57
1952 2076 1.679680 CTTGCGACCGGATTAGGAGTA 59.320 52.381 9.46 0.00 34.73 2.59
1953 2077 0.460311 CTTGCGACCGGATTAGGAGT 59.540 55.000 9.46 0.00 34.73 3.85
1954 2078 0.460311 ACTTGCGACCGGATTAGGAG 59.540 55.000 9.46 0.83 34.73 3.69
1955 2079 0.174845 CACTTGCGACCGGATTAGGA 59.825 55.000 9.46 0.00 34.73 2.94
2003 2127 3.392882 CATGAAAAAGCCACCCTGAAAC 58.607 45.455 0.00 0.00 0.00 2.78
2055 2179 8.772705 GCACAGAAAAATGAATCCAAATTGTAA 58.227 29.630 0.00 0.00 0.00 2.41
2105 2233 5.929992 AGCAAATTGACCTTTCATCAACATG 59.070 36.000 0.00 0.00 38.84 3.21
2143 2271 9.675464 ATCCGTTTACTCAATTATTAACCAGAA 57.325 29.630 0.00 0.00 0.00 3.02
2183 2336 1.670811 GCAACCGTAATCTCCACATGG 59.329 52.381 0.00 0.00 0.00 3.66
2195 2348 5.404946 GTCTAATGTACAGAAGCAACCGTA 58.595 41.667 0.33 0.00 0.00 4.02
2249 2402 9.056005 GTTTATAATGATCTGGTGAAGCACATA 57.944 33.333 0.00 0.00 35.86 2.29
2265 2418 7.648039 AAAGGTAAATGCCGGTTTATAATGA 57.352 32.000 1.90 0.00 0.00 2.57
2272 2425 7.715686 TGAATTTTAAAAGGTAAATGCCGGTTT 59.284 29.630 1.90 0.00 0.00 3.27
2308 2461 5.518848 TGCAAGCCATACCATCAAAATAG 57.481 39.130 0.00 0.00 0.00 1.73
2519 2674 0.112995 AAGTTGCTCTTCCATGCCCA 59.887 50.000 0.00 0.00 0.00 5.36
2580 2735 7.885297 TCACAATTTAGCAAAAGTCTAAGCAT 58.115 30.769 0.00 0.00 0.00 3.79
2586 2747 6.699575 ACACTCACAATTTAGCAAAAGTCT 57.300 33.333 0.00 0.00 0.00 3.24
2587 2748 8.850454 TTTACACTCACAATTTAGCAAAAGTC 57.150 30.769 0.00 0.00 0.00 3.01
2635 2796 9.284968 CATCCCTTTCGATTTTACCATAATAGT 57.715 33.333 0.00 0.00 0.00 2.12
2637 2798 7.942341 AGCATCCCTTTCGATTTTACCATAATA 59.058 33.333 0.00 0.00 0.00 0.98
2646 2807 4.593956 AGAGAAGCATCCCTTTCGATTTT 58.406 39.130 0.00 0.00 32.78 1.82
2674 2835 6.648192 TCAAAGCAAAGAAGATTTGGGAAAA 58.352 32.000 5.07 0.00 43.15 2.29
2847 3012 5.599999 ACTTGTCCTGGCATAGTAGTTAG 57.400 43.478 0.00 0.00 0.00 2.34
3023 3192 8.462016 GGCAACATGAAGTAGAGTAAATGAAAT 58.538 33.333 0.00 0.00 0.00 2.17
3024 3193 7.665559 AGGCAACATGAAGTAGAGTAAATGAAA 59.334 33.333 0.00 0.00 41.41 2.69
3051 3221 5.281693 TCACATCTTTCAACGCACTAATG 57.718 39.130 0.00 0.00 0.00 1.90
3060 3230 3.696548 GGGGGATCTTCACATCTTTCAAC 59.303 47.826 0.00 0.00 0.00 3.18
3130 3300 5.776744 AGAAGCATGAAATTCTTGTGGAAC 58.223 37.500 10.01 0.00 36.70 3.62
3203 3373 6.004574 GGATCCCTGGGAAATATAAACAGAC 58.995 44.000 21.42 0.00 34.34 3.51
3259 3429 3.102972 AGAAGCACCAGCAGATAGAAGA 58.897 45.455 0.00 0.00 45.49 2.87
3260 3430 3.540314 AGAAGCACCAGCAGATAGAAG 57.460 47.619 0.00 0.00 45.49 2.85
3261 3431 3.988976 AAGAAGCACCAGCAGATAGAA 57.011 42.857 0.00 0.00 45.49 2.10
3262 3432 3.988976 AAAGAAGCACCAGCAGATAGA 57.011 42.857 0.00 0.00 45.49 1.98
3291 3461 7.501559 GCTCCGGATGGTACTATCTGTATAATA 59.498 40.741 22.33 4.56 36.30 0.98
3292 3462 6.321690 GCTCCGGATGGTACTATCTGTATAAT 59.678 42.308 22.33 0.00 36.30 1.28
3325 3495 6.876257 AGACAGGTTATCATGAAAACAGAGAC 59.124 38.462 0.00 0.00 0.00 3.36
3336 3506 2.292267 GTGCCCAGACAGGTTATCATG 58.708 52.381 0.00 0.00 34.66 3.07
3388 3558 8.469902 CGCAGTCTAATAATAACTAGACAAACG 58.530 37.037 10.85 7.66 44.32 3.60
3445 3622 8.180267 AGAAATCAGTTATCAGCGAAAGAATTG 58.820 33.333 0.00 0.00 0.00 2.32
3450 3627 5.352569 ACCAGAAATCAGTTATCAGCGAAAG 59.647 40.000 0.00 0.00 0.00 2.62
3515 3692 9.029243 CATTGCTATTTGAGTTACAGAGTAGAG 57.971 37.037 0.00 0.00 0.00 2.43
3561 3738 6.978343 TTACCAAAAGACGGTGATCTATTG 57.022 37.500 0.00 0.00 37.33 1.90
3587 3766 8.553696 ACAGAAATTTCATTTTTGATTGCAGAC 58.446 29.630 19.99 0.00 37.67 3.51
3599 3778 8.645110 AGATTCACCTCAACAGAAATTTCATTT 58.355 29.630 19.99 9.35 34.64 2.32
3614 3793 0.994247 ATGCCCACAGATTCACCTCA 59.006 50.000 0.00 0.00 0.00 3.86
3629 3808 3.512516 GCTGCCGGAGTGAATGCC 61.513 66.667 5.05 0.00 0.00 4.40
3686 3868 0.833834 ATCTATGAGCCTCCCACGGG 60.834 60.000 0.00 0.00 0.00 5.28
3722 3904 3.084039 CTGCTATTCTTGGACTTTGGCA 58.916 45.455 0.00 0.00 0.00 4.92
3789 3971 3.072476 ACCAAACAAGCTACTCAAGGCTA 59.928 43.478 0.00 0.00 37.87 3.93
3794 3976 7.058023 TCTAGTAACCAAACAAGCTACTCAA 57.942 36.000 0.00 0.00 0.00 3.02
3795 3977 6.659745 TCTAGTAACCAAACAAGCTACTCA 57.340 37.500 0.00 0.00 0.00 3.41
3797 3979 7.063934 AGTTCTAGTAACCAAACAAGCTACT 57.936 36.000 0.00 0.00 0.00 2.57
3798 3980 8.999220 ATAGTTCTAGTAACCAAACAAGCTAC 57.001 34.615 0.00 0.00 0.00 3.58
3799 3981 9.032624 AGATAGTTCTAGTAACCAAACAAGCTA 57.967 33.333 0.00 0.00 0.00 3.32
3800 3982 7.908453 AGATAGTTCTAGTAACCAAACAAGCT 58.092 34.615 0.00 0.00 0.00 3.74
3801 3983 8.549338 AAGATAGTTCTAGTAACCAAACAAGC 57.451 34.615 0.00 0.00 0.00 4.01
3827 4009 3.181512 CGCAAGCAAAGCCAAAAGAAAAA 60.182 39.130 0.00 0.00 0.00 1.94
3828 4010 2.351111 CGCAAGCAAAGCCAAAAGAAAA 59.649 40.909 0.00 0.00 0.00 2.29
3829 4011 1.932511 CGCAAGCAAAGCCAAAAGAAA 59.067 42.857 0.00 0.00 0.00 2.52
3830 4012 1.569708 CGCAAGCAAAGCCAAAAGAA 58.430 45.000 0.00 0.00 0.00 2.52
3831 4013 0.249405 CCGCAAGCAAAGCCAAAAGA 60.249 50.000 0.00 0.00 0.00 2.52
3832 4014 1.223417 CCCGCAAGCAAAGCCAAAAG 61.223 55.000 0.00 0.00 0.00 2.27
3833 4015 1.227497 CCCGCAAGCAAAGCCAAAA 60.227 52.632 0.00 0.00 0.00 2.44
3834 4016 2.420890 CCCGCAAGCAAAGCCAAA 59.579 55.556 0.00 0.00 0.00 3.28
3835 4017 4.298069 GCCCGCAAGCAAAGCCAA 62.298 61.111 0.00 0.00 0.00 4.52
3837 4019 4.729856 CAGCCCGCAAGCAAAGCC 62.730 66.667 0.00 0.00 34.23 4.35
3838 4020 3.621892 CTCAGCCCGCAAGCAAAGC 62.622 63.158 0.00 0.00 34.23 3.51
3839 4021 1.799258 AACTCAGCCCGCAAGCAAAG 61.799 55.000 0.00 0.00 34.23 2.77
3840 4022 1.795170 GAACTCAGCCCGCAAGCAAA 61.795 55.000 0.00 0.00 34.23 3.68
3841 4023 2.203337 AACTCAGCCCGCAAGCAA 60.203 55.556 0.00 0.00 34.23 3.91
3842 4024 2.669569 GAACTCAGCCCGCAAGCA 60.670 61.111 0.00 0.00 34.23 3.91
3843 4025 2.669569 TGAACTCAGCCCGCAAGC 60.670 61.111 0.00 0.00 0.00 4.01
3844 4026 0.392193 ATCTGAACTCAGCCCGCAAG 60.392 55.000 1.61 0.00 43.46 4.01
3845 4027 0.901827 TATCTGAACTCAGCCCGCAA 59.098 50.000 1.61 0.00 43.46 4.85
3846 4028 1.123077 ATATCTGAACTCAGCCCGCA 58.877 50.000 1.61 0.00 43.46 5.69
3847 4029 2.246719 AATATCTGAACTCAGCCCGC 57.753 50.000 1.61 0.00 43.46 6.13
3848 4030 2.289002 GCAAATATCTGAACTCAGCCCG 59.711 50.000 1.61 0.00 43.46 6.13
3849 4031 3.282021 TGCAAATATCTGAACTCAGCCC 58.718 45.455 1.61 0.00 43.46 5.19
3850 4032 3.944015 ACTGCAAATATCTGAACTCAGCC 59.056 43.478 1.61 0.00 43.46 4.85
3851 4033 6.457528 GGTTACTGCAAATATCTGAACTCAGC 60.458 42.308 1.61 0.00 43.46 4.26
3852 4034 6.595326 TGGTTACTGCAAATATCTGAACTCAG 59.405 38.462 0.00 0.00 45.08 3.35
3853 4035 6.472016 TGGTTACTGCAAATATCTGAACTCA 58.528 36.000 0.00 0.00 0.00 3.41
3854 4036 6.985188 TGGTTACTGCAAATATCTGAACTC 57.015 37.500 0.00 0.00 0.00 3.01
3855 4037 7.573096 CGTTTGGTTACTGCAAATATCTGAACT 60.573 37.037 0.00 0.00 0.00 3.01
3856 4038 6.523201 CGTTTGGTTACTGCAAATATCTGAAC 59.477 38.462 0.00 0.00 0.00 3.18
3857 4039 6.428465 TCGTTTGGTTACTGCAAATATCTGAA 59.572 34.615 0.00 0.00 0.00 3.02
3858 4040 5.935206 TCGTTTGGTTACTGCAAATATCTGA 59.065 36.000 0.00 0.00 0.00 3.27
3859 4041 6.176975 TCGTTTGGTTACTGCAAATATCTG 57.823 37.500 0.00 0.00 0.00 2.90
3860 4042 6.811253 TTCGTTTGGTTACTGCAAATATCT 57.189 33.333 0.00 0.00 0.00 1.98
3861 4043 7.861176 TTTTCGTTTGGTTACTGCAAATATC 57.139 32.000 0.00 0.00 0.00 1.63
3863 4045 9.562583 GATATTTTCGTTTGGTTACTGCAAATA 57.437 29.630 0.00 0.00 0.00 1.40
3864 4046 8.303876 AGATATTTTCGTTTGGTTACTGCAAAT 58.696 29.630 0.00 0.00 0.00 2.32
3865 4047 7.593273 CAGATATTTTCGTTTGGTTACTGCAAA 59.407 33.333 0.00 0.00 0.00 3.68
3866 4048 7.041030 TCAGATATTTTCGTTTGGTTACTGCAA 60.041 33.333 0.00 0.00 0.00 4.08
3867 4049 6.428465 TCAGATATTTTCGTTTGGTTACTGCA 59.572 34.615 0.00 0.00 0.00 4.41
3868 4050 6.837992 TCAGATATTTTCGTTTGGTTACTGC 58.162 36.000 0.00 0.00 0.00 4.40
3869 4051 8.504005 ACTTCAGATATTTTCGTTTGGTTACTG 58.496 33.333 0.00 0.00 0.00 2.74
3870 4052 8.617290 ACTTCAGATATTTTCGTTTGGTTACT 57.383 30.769 0.00 0.00 0.00 2.24
3871 4053 8.500773 TGACTTCAGATATTTTCGTTTGGTTAC 58.499 33.333 0.00 0.00 0.00 2.50
3872 4054 8.610248 TGACTTCAGATATTTTCGTTTGGTTA 57.390 30.769 0.00 0.00 0.00 2.85
3873 4055 7.504924 TGACTTCAGATATTTTCGTTTGGTT 57.495 32.000 0.00 0.00 0.00 3.67
3874 4056 6.348540 GCTGACTTCAGATATTTTCGTTTGGT 60.349 38.462 10.54 0.00 46.59 3.67
3875 4057 6.024049 GCTGACTTCAGATATTTTCGTTTGG 58.976 40.000 10.54 0.00 46.59 3.28
3876 4058 6.024049 GGCTGACTTCAGATATTTTCGTTTG 58.976 40.000 10.54 0.00 46.59 2.93
3877 4059 5.123979 GGGCTGACTTCAGATATTTTCGTTT 59.876 40.000 10.54 0.00 46.59 3.60
3878 4060 4.636206 GGGCTGACTTCAGATATTTTCGTT 59.364 41.667 10.54 0.00 46.59 3.85
3879 4061 4.192317 GGGCTGACTTCAGATATTTTCGT 58.808 43.478 10.54 0.00 46.59 3.85
3880 4062 3.246226 CGGGCTGACTTCAGATATTTTCG 59.754 47.826 10.54 0.00 46.59 3.46
3881 4063 3.002759 GCGGGCTGACTTCAGATATTTTC 59.997 47.826 10.54 0.00 46.59 2.29
3882 4064 2.945668 GCGGGCTGACTTCAGATATTTT 59.054 45.455 10.54 0.00 46.59 1.82
3883 4065 2.092968 TGCGGGCTGACTTCAGATATTT 60.093 45.455 10.54 0.00 46.59 1.40
3884 4066 1.486310 TGCGGGCTGACTTCAGATATT 59.514 47.619 10.54 0.00 46.59 1.28
3885 4067 1.123077 TGCGGGCTGACTTCAGATAT 58.877 50.000 10.54 0.00 46.59 1.63
3886 4068 0.901827 TTGCGGGCTGACTTCAGATA 59.098 50.000 10.54 0.00 46.59 1.98
3887 4069 0.392193 CTTGCGGGCTGACTTCAGAT 60.392 55.000 10.54 0.00 46.59 2.90
3888 4070 1.004560 CTTGCGGGCTGACTTCAGA 60.005 57.895 10.54 0.00 46.59 3.27
3889 4071 2.684843 GCTTGCGGGCTGACTTCAG 61.685 63.158 0.00 1.56 46.40 3.02
3890 4072 2.669569 GCTTGCGGGCTGACTTCA 60.670 61.111 0.00 0.00 0.00 3.02
3891 4073 1.795170 TTTGCTTGCGGGCTGACTTC 61.795 55.000 0.00 0.00 0.00 3.01
3892 4074 1.391157 TTTTGCTTGCGGGCTGACTT 61.391 50.000 0.00 0.00 0.00 3.01
3893 4075 1.827789 TTTTGCTTGCGGGCTGACT 60.828 52.632 0.00 0.00 0.00 3.41
3894 4076 1.661509 GTTTTGCTTGCGGGCTGAC 60.662 57.895 0.00 0.00 0.00 3.51
3895 4077 2.727544 GTTTTGCTTGCGGGCTGA 59.272 55.556 0.00 0.00 0.00 4.26
3896 4078 2.676016 TTCGTTTTGCTTGCGGGCTG 62.676 55.000 2.59 0.00 0.00 4.85
3897 4079 2.010582 TTTCGTTTTGCTTGCGGGCT 62.011 50.000 2.59 0.00 0.00 5.19
3898 4080 1.148759 TTTTCGTTTTGCTTGCGGGC 61.149 50.000 0.00 0.00 0.00 6.13
3899 4081 0.574922 GTTTTCGTTTTGCTTGCGGG 59.425 50.000 0.00 0.00 0.00 6.13
3900 4082 1.255084 CTGTTTTCGTTTTGCTTGCGG 59.745 47.619 0.00 0.00 0.00 5.69
3901 4083 2.181205 TCTGTTTTCGTTTTGCTTGCG 58.819 42.857 0.00 0.00 0.00 4.85
3902 4084 3.434637 TCTCTGTTTTCGTTTTGCTTGC 58.565 40.909 0.00 0.00 0.00 4.01
3903 4085 6.430451 ACTATCTCTGTTTTCGTTTTGCTTG 58.570 36.000 0.00 0.00 0.00 4.01
3904 4086 6.619801 ACTATCTCTGTTTTCGTTTTGCTT 57.380 33.333 0.00 0.00 0.00 3.91
3905 4087 6.293462 GGAACTATCTCTGTTTTCGTTTTGCT 60.293 38.462 0.00 0.00 0.00 3.91
3906 4088 5.851703 GGAACTATCTCTGTTTTCGTTTTGC 59.148 40.000 0.00 0.00 0.00 3.68
3907 4089 6.954944 TGGAACTATCTCTGTTTTCGTTTTG 58.045 36.000 0.00 0.00 0.00 2.44
3908 4090 6.766467 ACTGGAACTATCTCTGTTTTCGTTTT 59.234 34.615 0.00 0.00 0.00 2.43
3909 4091 6.289064 ACTGGAACTATCTCTGTTTTCGTTT 58.711 36.000 0.00 0.00 0.00 3.60
3910 4092 5.855045 ACTGGAACTATCTCTGTTTTCGTT 58.145 37.500 0.00 0.00 0.00 3.85
3911 4093 5.470047 ACTGGAACTATCTCTGTTTTCGT 57.530 39.130 0.00 0.00 0.00 3.85
3912 4094 6.310711 GGTTACTGGAACTATCTCTGTTTTCG 59.689 42.308 2.26 0.00 38.21 3.46
3913 4095 7.159372 TGGTTACTGGAACTATCTCTGTTTTC 58.841 38.462 2.26 0.00 38.21 2.29
3914 4096 7.074653 TGGTTACTGGAACTATCTCTGTTTT 57.925 36.000 2.26 0.00 38.21 2.43
3915 4097 6.681729 TGGTTACTGGAACTATCTCTGTTT 57.318 37.500 2.26 0.00 38.21 2.83
3916 4098 6.681729 TTGGTTACTGGAACTATCTCTGTT 57.318 37.500 2.26 0.00 38.21 3.16
3917 4099 6.042781 TGTTTGGTTACTGGAACTATCTCTGT 59.957 38.462 2.26 0.00 38.21 3.41
3918 4100 6.464222 TGTTTGGTTACTGGAACTATCTCTG 58.536 40.000 2.26 0.00 38.21 3.35
3919 4101 6.681729 TGTTTGGTTACTGGAACTATCTCT 57.318 37.500 2.26 0.00 38.21 3.10
3920 4102 6.128254 GCTTGTTTGGTTACTGGAACTATCTC 60.128 42.308 2.26 0.00 38.21 2.75
3921 4103 5.705905 GCTTGTTTGGTTACTGGAACTATCT 59.294 40.000 2.26 0.00 38.21 1.98
3922 4104 5.472137 TGCTTGTTTGGTTACTGGAACTATC 59.528 40.000 2.26 0.00 38.21 2.08
3923 4105 5.381757 TGCTTGTTTGGTTACTGGAACTAT 58.618 37.500 2.26 0.00 38.21 2.12
3924 4106 4.783055 TGCTTGTTTGGTTACTGGAACTA 58.217 39.130 2.26 0.00 38.21 2.24
3925 4107 3.626930 TGCTTGTTTGGTTACTGGAACT 58.373 40.909 2.26 0.00 38.21 3.01
3926 4108 4.109766 GTTGCTTGTTTGGTTACTGGAAC 58.890 43.478 0.00 0.00 37.31 3.62
3927 4109 4.020543 AGTTGCTTGTTTGGTTACTGGAA 58.979 39.130 0.00 0.00 0.00 3.53
3928 4110 3.626930 AGTTGCTTGTTTGGTTACTGGA 58.373 40.909 0.00 0.00 0.00 3.86
3929 4111 5.705609 ATAGTTGCTTGTTTGGTTACTGG 57.294 39.130 0.00 0.00 0.00 4.00
3930 4112 7.435068 ACTATAGTTGCTTGTTTGGTTACTG 57.565 36.000 0.00 0.00 0.00 2.74
3931 4113 8.459911 AAACTATAGTTGCTTGTTTGGTTACT 57.540 30.769 18.70 0.00 38.44 2.24
3932 4114 9.524106 AAAAACTATAGTTGCTTGTTTGGTTAC 57.476 29.630 18.70 0.00 38.44 2.50
3955 4137 0.387565 GCCTCGGCAGAAACCAAAAA 59.612 50.000 2.41 0.00 41.49 1.94
3956 4138 2.037871 GCCTCGGCAGAAACCAAAA 58.962 52.632 2.41 0.00 41.49 2.44
3957 4139 3.758172 GCCTCGGCAGAAACCAAA 58.242 55.556 2.41 0.00 41.49 3.28
3967 4149 3.257933 CAGAAACACTGCCTCGGC 58.742 61.111 0.00 0.00 39.86 5.54
3975 4157 1.073897 GAGGGCCAGCAGAAACACT 59.926 57.895 6.18 0.00 0.00 3.55
3976 4158 1.973812 GGAGGGCCAGCAGAAACAC 60.974 63.158 6.18 0.00 0.00 3.32
3977 4159 2.436109 GGAGGGCCAGCAGAAACA 59.564 61.111 6.18 0.00 0.00 2.83
3978 4160 2.747855 CGGAGGGCCAGCAGAAAC 60.748 66.667 6.18 0.00 0.00 2.78
3979 4161 4.722700 GCGGAGGGCCAGCAGAAA 62.723 66.667 6.18 0.00 34.99 2.52
3985 4167 4.809496 AAGCATGCGGAGGGCCAG 62.809 66.667 13.01 0.00 42.61 4.85
3987 4169 3.697439 TACAAGCATGCGGAGGGCC 62.697 63.158 13.01 0.00 42.61 5.80
3988 4170 1.103398 ATTACAAGCATGCGGAGGGC 61.103 55.000 13.01 0.00 43.96 5.19
3989 4171 1.066002 CAATTACAAGCATGCGGAGGG 59.934 52.381 13.01 3.86 0.00 4.30
3990 4172 2.016318 TCAATTACAAGCATGCGGAGG 58.984 47.619 13.01 5.73 0.00 4.30
3991 4173 3.313249 TCATCAATTACAAGCATGCGGAG 59.687 43.478 13.01 8.77 0.00 4.63
3992 4174 3.277715 TCATCAATTACAAGCATGCGGA 58.722 40.909 13.01 0.00 0.00 5.54
3993 4175 3.696281 TCATCAATTACAAGCATGCGG 57.304 42.857 13.01 11.49 0.00 5.69
3994 4176 5.798434 CCATATCATCAATTACAAGCATGCG 59.202 40.000 13.01 0.84 0.00 4.73
3995 4177 6.684686 ACCATATCATCAATTACAAGCATGC 58.315 36.000 10.51 10.51 0.00 4.06
3996 4178 9.188588 GAAACCATATCATCAATTACAAGCATG 57.811 33.333 0.00 0.00 0.00 4.06
3997 4179 8.077991 CGAAACCATATCATCAATTACAAGCAT 58.922 33.333 0.00 0.00 0.00 3.79
3998 4180 7.066887 ACGAAACCATATCATCAATTACAAGCA 59.933 33.333 0.00 0.00 0.00 3.91
3999 4181 7.417612 ACGAAACCATATCATCAATTACAAGC 58.582 34.615 0.00 0.00 0.00 4.01
4000 4182 9.225201 CAACGAAACCATATCATCAATTACAAG 57.775 33.333 0.00 0.00 0.00 3.16
4001 4183 8.187480 CCAACGAAACCATATCATCAATTACAA 58.813 33.333 0.00 0.00 0.00 2.41
4002 4184 7.338196 ACCAACGAAACCATATCATCAATTACA 59.662 33.333 0.00 0.00 0.00 2.41
4003 4185 7.703328 ACCAACGAAACCATATCATCAATTAC 58.297 34.615 0.00 0.00 0.00 1.89
4004 4186 7.873719 ACCAACGAAACCATATCATCAATTA 57.126 32.000 0.00 0.00 0.00 1.40
4005 4187 6.773976 ACCAACGAAACCATATCATCAATT 57.226 33.333 0.00 0.00 0.00 2.32
4006 4188 7.873719 TTACCAACGAAACCATATCATCAAT 57.126 32.000 0.00 0.00 0.00 2.57
4007 4189 7.201776 CCATTACCAACGAAACCATATCATCAA 60.202 37.037 0.00 0.00 0.00 2.57
4008 4190 6.262049 CCATTACCAACGAAACCATATCATCA 59.738 38.462 0.00 0.00 0.00 3.07
4009 4191 6.485313 TCCATTACCAACGAAACCATATCATC 59.515 38.462 0.00 0.00 0.00 2.92
4010 4192 6.361433 TCCATTACCAACGAAACCATATCAT 58.639 36.000 0.00 0.00 0.00 2.45
4011 4193 5.746284 TCCATTACCAACGAAACCATATCA 58.254 37.500 0.00 0.00 0.00 2.15
4012 4194 6.687081 TTCCATTACCAACGAAACCATATC 57.313 37.500 0.00 0.00 0.00 1.63
4013 4195 6.096282 CCTTTCCATTACCAACGAAACCATAT 59.904 38.462 0.00 0.00 0.00 1.78
4014 4196 5.416326 CCTTTCCATTACCAACGAAACCATA 59.584 40.000 0.00 0.00 0.00 2.74
4015 4197 4.219725 CCTTTCCATTACCAACGAAACCAT 59.780 41.667 0.00 0.00 0.00 3.55
4016 4198 3.570550 CCTTTCCATTACCAACGAAACCA 59.429 43.478 0.00 0.00 0.00 3.67
4017 4199 3.822167 TCCTTTCCATTACCAACGAAACC 59.178 43.478 0.00 0.00 0.00 3.27
4018 4200 4.615223 GCTCCTTTCCATTACCAACGAAAC 60.615 45.833 0.00 0.00 0.00 2.78
4019 4201 3.504520 GCTCCTTTCCATTACCAACGAAA 59.495 43.478 0.00 0.00 0.00 3.46
4020 4202 3.078837 GCTCCTTTCCATTACCAACGAA 58.921 45.455 0.00 0.00 0.00 3.85
4021 4203 2.617021 GGCTCCTTTCCATTACCAACGA 60.617 50.000 0.00 0.00 0.00 3.85
4022 4204 1.743394 GGCTCCTTTCCATTACCAACG 59.257 52.381 0.00 0.00 0.00 4.10
4023 4205 1.743394 CGGCTCCTTTCCATTACCAAC 59.257 52.381 0.00 0.00 0.00 3.77
4070 5501 3.192844 TCAGGTTCGTCGAGCTAAAATCT 59.807 43.478 9.04 0.00 0.00 2.40
4109 5540 2.333938 CCGTTCCACGACGTCACT 59.666 61.111 17.16 0.00 46.05 3.41
4111 5542 3.598715 AGCCGTTCCACGACGTCA 61.599 61.111 17.16 0.00 46.05 4.35
4114 5545 3.403057 CACAGCCGTTCCACGACG 61.403 66.667 0.00 0.00 46.05 5.12
4119 5550 0.541392 ATCTATGCACAGCCGTTCCA 59.459 50.000 0.00 0.00 0.00 3.53
4127 5558 5.468072 GGGAGTTGACAATATCTATGCACAG 59.532 44.000 0.00 0.00 0.00 3.66
4145 5576 1.202879 TCAAAGTTCGGCATGGGAGTT 60.203 47.619 0.00 0.00 0.00 3.01
4151 5582 0.950836 TGGTGTCAAAGTTCGGCATG 59.049 50.000 0.00 0.00 0.00 4.06
4184 5615 0.394216 TGATCCAATGGCCTGTTCCG 60.394 55.000 3.32 0.00 0.00 4.30
4190 5621 1.868713 TGCATTTGATCCAATGGCCT 58.131 45.000 18.34 0.00 0.00 5.19
4206 5637 2.433970 TCGACCAATATCCTGTCATGCA 59.566 45.455 0.00 0.00 0.00 3.96
4226 5657 3.933031 CATTCTTCTATGCAACGTGCTC 58.067 45.455 10.54 0.00 45.31 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.