Multiple sequence alignment - TraesCS3B01G033300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G033300 chr3B 100.000 2984 0 0 1 2984 16055140 16058123 0.000000e+00 5511.0
1 TraesCS3B01G033300 chr3B 94.373 2417 108 15 289 2688 25249648 25247243 0.000000e+00 3685.0
2 TraesCS3B01G033300 chr3B 81.567 1481 244 14 526 1995 16035872 16037334 0.000000e+00 1195.0
3 TraesCS3B01G033300 chr3B 86.000 50 6 1 168 217 423795084 423795132 5.000000e-03 52.8
4 TraesCS3B01G033300 chr3D 92.691 1929 124 11 276 2192 11393002 11394925 0.000000e+00 2765.0
5 TraesCS3B01G033300 chr3D 79.203 1731 318 28 289 1993 11370025 11371739 0.000000e+00 1164.0
6 TraesCS3B01G033300 chr3D 80.104 1538 275 18 473 1991 11772916 11771391 0.000000e+00 1116.0
7 TraesCS3B01G033300 chr3A 81.781 1471 240 12 536 1995 25911590 25910137 0.000000e+00 1206.0
8 TraesCS3B01G033300 chr3A 81.707 164 21 7 2195 2351 621986188 621986349 8.680000e-26 128.0
9 TraesCS3B01G033300 chr1A 85.625 160 16 6 2196 2350 553972432 553972589 8.560000e-36 161.0
10 TraesCS3B01G033300 chr1A 85.246 61 6 3 164 224 463029642 463029585 3.210000e-05 60.2
11 TraesCS3B01G033300 chr2D 81.818 176 23 5 2196 2364 618179500 618179673 4.010000e-29 139.0
12 TraesCS3B01G033300 chr7D 82.692 156 21 5 2196 2347 52693253 52693100 1.870000e-27 134.0
13 TraesCS3B01G033300 chr4B 81.707 164 18 8 2204 2360 106795205 106795363 3.120000e-25 126.0
14 TraesCS3B01G033300 chr4B 87.037 54 5 2 165 217 62038904 62038956 3.210000e-05 60.2
15 TraesCS3B01G033300 chr4B 96.774 31 1 0 165 195 550472159 550472189 5.000000e-03 52.8
16 TraesCS3B01G033300 chr6D 80.982 163 25 5 2204 2363 11667382 11667223 1.120000e-24 124.0
17 TraesCS3B01G033300 chr6D 80.460 174 22 11 2199 2361 87087196 87087368 4.040000e-24 122.0
18 TraesCS3B01G033300 chr6D 90.196 51 1 4 2452 2502 154185552 154185506 2.480000e-06 63.9
19 TraesCS3B01G033300 chr4A 84.127 126 20 0 616 741 739693380 739693255 4.040000e-24 122.0
20 TraesCS3B01G033300 chr4A 84.127 126 20 0 616 741 742087388 742087263 4.040000e-24 122.0
21 TraesCS3B01G033300 chr4A 85.841 113 16 0 629 741 739790675 739790787 1.450000e-23 121.0
22 TraesCS3B01G033300 chr5A 79.310 174 28 6 2195 2361 287624193 287624021 6.760000e-22 115.0
23 TraesCS3B01G033300 chr1D 86.869 99 12 1 625 723 416127185 416127282 3.140000e-20 110.0
24 TraesCS3B01G033300 chr1D 100.000 29 0 0 168 196 483693961 483693933 1.000000e-03 54.7
25 TraesCS3B01G033300 chr5B 85.965 57 5 3 164 218 548044638 548044693 1.160000e-04 58.4
26 TraesCS3B01G033300 chr2B 88.000 50 4 2 168 217 158437692 158437645 1.160000e-04 58.4
27 TraesCS3B01G033300 chr1B 88.000 50 4 2 168 217 148888117 148888070 1.160000e-04 58.4
28 TraesCS3B01G033300 chr7B 96.970 33 0 1 164 195 202109314 202109346 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G033300 chr3B 16055140 16058123 2983 False 5511 5511 100.000 1 2984 1 chr3B.!!$F2 2983
1 TraesCS3B01G033300 chr3B 25247243 25249648 2405 True 3685 3685 94.373 289 2688 1 chr3B.!!$R1 2399
2 TraesCS3B01G033300 chr3B 16035872 16037334 1462 False 1195 1195 81.567 526 1995 1 chr3B.!!$F1 1469
3 TraesCS3B01G033300 chr3D 11393002 11394925 1923 False 2765 2765 92.691 276 2192 1 chr3D.!!$F2 1916
4 TraesCS3B01G033300 chr3D 11370025 11371739 1714 False 1164 1164 79.203 289 1993 1 chr3D.!!$F1 1704
5 TraesCS3B01G033300 chr3D 11771391 11772916 1525 True 1116 1116 80.104 473 1991 1 chr3D.!!$R1 1518
6 TraesCS3B01G033300 chr3A 25910137 25911590 1453 True 1206 1206 81.781 536 1995 1 chr3A.!!$R1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 371 0.040958 CCAAGAACGCACTCAGTTGC 60.041 55.0 0.00 0.0 39.28 4.17 F
890 909 0.581529 CGTGCCAACGCTGGTATATG 59.418 55.0 6.73 0.0 45.53 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1618 1.101331 GCCAGAATTGAAGGCTCAGG 58.899 55.0 5.4 0.0 44.92 3.86 R
2863 2898 0.032130 TGAGCTGGTTGTGAGTCGTC 59.968 55.0 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.578601 GAGTCGTACACATATTGCTTTGC 58.421 43.478 0.00 0.00 0.00 3.68
23 24 4.253685 AGTCGTACACATATTGCTTTGCT 58.746 39.130 0.00 0.00 0.00 3.91
24 25 5.416083 AGTCGTACACATATTGCTTTGCTA 58.584 37.500 0.00 0.00 0.00 3.49
25 26 5.872617 AGTCGTACACATATTGCTTTGCTAA 59.127 36.000 0.00 0.00 0.00 3.09
26 27 6.538742 AGTCGTACACATATTGCTTTGCTAAT 59.461 34.615 0.00 0.00 0.00 1.73
27 28 6.846283 GTCGTACACATATTGCTTTGCTAATC 59.154 38.462 0.00 0.00 0.00 1.75
28 29 6.761242 TCGTACACATATTGCTTTGCTAATCT 59.239 34.615 0.00 0.00 0.00 2.40
29 30 7.923878 TCGTACACATATTGCTTTGCTAATCTA 59.076 33.333 0.00 0.00 0.00 1.98
30 31 8.547894 CGTACACATATTGCTTTGCTAATCTAA 58.452 33.333 0.00 0.00 0.00 2.10
33 34 9.123902 ACACATATTGCTTTGCTAATCTAATCA 57.876 29.630 0.00 0.00 0.00 2.57
34 35 9.390795 CACATATTGCTTTGCTAATCTAATCAC 57.609 33.333 0.00 0.00 0.00 3.06
35 36 9.123902 ACATATTGCTTTGCTAATCTAATCACA 57.876 29.630 0.00 0.00 0.00 3.58
36 37 9.390795 CATATTGCTTTGCTAATCTAATCACAC 57.609 33.333 0.00 0.00 0.00 3.82
37 38 6.816134 TTGCTTTGCTAATCTAATCACACA 57.184 33.333 0.00 0.00 0.00 3.72
38 39 6.426980 TGCTTTGCTAATCTAATCACACAG 57.573 37.500 0.00 0.00 0.00 3.66
39 40 5.163723 TGCTTTGCTAATCTAATCACACAGC 60.164 40.000 0.00 0.00 0.00 4.40
40 41 5.163723 GCTTTGCTAATCTAATCACACAGCA 60.164 40.000 0.00 0.00 35.87 4.41
41 42 6.623549 GCTTTGCTAATCTAATCACACAGCAA 60.624 38.462 2.21 2.21 43.57 3.91
42 43 7.395190 TTTGCTAATCTAATCACACAGCAAT 57.605 32.000 6.90 0.00 44.34 3.56
43 44 8.504812 TTTGCTAATCTAATCACACAGCAATA 57.495 30.769 6.90 0.00 44.34 1.90
44 45 8.681486 TTGCTAATCTAATCACACAGCAATAT 57.319 30.769 2.21 0.00 41.24 1.28
45 46 8.681486 TGCTAATCTAATCACACAGCAATATT 57.319 30.769 0.00 0.00 34.82 1.28
46 47 9.123902 TGCTAATCTAATCACACAGCAATATTT 57.876 29.630 0.00 0.00 34.82 1.40
51 52 9.836864 ATCTAATCACACAGCAATATTTAGACA 57.163 29.630 0.00 0.00 0.00 3.41
52 53 9.317936 TCTAATCACACAGCAATATTTAGACAG 57.682 33.333 0.00 0.00 0.00 3.51
53 54 9.317936 CTAATCACACAGCAATATTTAGACAGA 57.682 33.333 0.00 0.00 0.00 3.41
54 55 8.565896 AATCACACAGCAATATTTAGACAGAA 57.434 30.769 0.00 0.00 0.00 3.02
55 56 7.601073 TCACACAGCAATATTTAGACAGAAG 57.399 36.000 0.00 0.00 0.00 2.85
56 57 7.161404 TCACACAGCAATATTTAGACAGAAGT 58.839 34.615 0.00 0.00 0.00 3.01
57 58 8.311109 TCACACAGCAATATTTAGACAGAAGTA 58.689 33.333 0.00 0.00 0.00 2.24
58 59 8.383619 CACACAGCAATATTTAGACAGAAGTAC 58.616 37.037 0.00 0.00 0.00 2.73
59 60 8.314751 ACACAGCAATATTTAGACAGAAGTACT 58.685 33.333 0.00 0.00 0.00 2.73
60 61 9.803315 CACAGCAATATTTAGACAGAAGTACTA 57.197 33.333 0.00 0.00 0.00 1.82
61 62 9.804758 ACAGCAATATTTAGACAGAAGTACTAC 57.195 33.333 0.00 0.00 0.00 2.73
62 63 9.250624 CAGCAATATTTAGACAGAAGTACTACC 57.749 37.037 0.00 0.00 0.00 3.18
63 64 9.203163 AGCAATATTTAGACAGAAGTACTACCT 57.797 33.333 0.00 0.00 0.00 3.08
64 65 9.465985 GCAATATTTAGACAGAAGTACTACCTC 57.534 37.037 0.00 0.00 0.00 3.85
65 66 9.968870 CAATATTTAGACAGAAGTACTACCTCC 57.031 37.037 0.00 0.00 0.00 4.30
66 67 6.696441 ATTTAGACAGAAGTACTACCTCCG 57.304 41.667 0.00 0.00 0.00 4.63
67 68 3.717452 AGACAGAAGTACTACCTCCGT 57.283 47.619 0.00 0.00 0.00 4.69
68 69 3.608796 AGACAGAAGTACTACCTCCGTC 58.391 50.000 0.00 0.00 0.00 4.79
69 70 3.263937 AGACAGAAGTACTACCTCCGTCT 59.736 47.826 6.23 6.23 0.00 4.18
70 71 3.608796 ACAGAAGTACTACCTCCGTCTC 58.391 50.000 0.00 0.00 0.00 3.36
71 72 3.008813 ACAGAAGTACTACCTCCGTCTCA 59.991 47.826 0.00 0.00 0.00 3.27
72 73 4.008330 CAGAAGTACTACCTCCGTCTCAA 58.992 47.826 0.00 0.00 0.00 3.02
73 74 4.458295 CAGAAGTACTACCTCCGTCTCAAA 59.542 45.833 0.00 0.00 0.00 2.69
74 75 4.701171 AGAAGTACTACCTCCGTCTCAAAG 59.299 45.833 0.00 0.00 0.00 2.77
75 76 4.298103 AGTACTACCTCCGTCTCAAAGA 57.702 45.455 0.00 0.00 0.00 2.52
76 77 4.660168 AGTACTACCTCCGTCTCAAAGAA 58.340 43.478 0.00 0.00 0.00 2.52
77 78 5.262804 AGTACTACCTCCGTCTCAAAGAAT 58.737 41.667 0.00 0.00 0.00 2.40
78 79 6.421485 AGTACTACCTCCGTCTCAAAGAATA 58.579 40.000 0.00 0.00 0.00 1.75
79 80 7.061688 AGTACTACCTCCGTCTCAAAGAATAT 58.938 38.462 0.00 0.00 0.00 1.28
80 81 8.216423 AGTACTACCTCCGTCTCAAAGAATATA 58.784 37.037 0.00 0.00 0.00 0.86
81 82 9.012161 GTACTACCTCCGTCTCAAAGAATATAT 57.988 37.037 0.00 0.00 0.00 0.86
82 83 7.887381 ACTACCTCCGTCTCAAAGAATATATG 58.113 38.462 0.00 0.00 0.00 1.78
83 84 6.978674 ACCTCCGTCTCAAAGAATATATGA 57.021 37.500 0.00 0.00 0.00 2.15
84 85 7.546250 ACCTCCGTCTCAAAGAATATATGAT 57.454 36.000 0.00 0.00 0.00 2.45
85 86 8.651589 ACCTCCGTCTCAAAGAATATATGATA 57.348 34.615 0.00 0.00 0.00 2.15
86 87 9.261035 ACCTCCGTCTCAAAGAATATATGATAT 57.739 33.333 0.00 0.00 0.00 1.63
115 116 9.706691 TTAGGCTAATTATATTTTGAGACGGAG 57.293 33.333 2.04 0.00 0.00 4.63
116 117 7.162082 AGGCTAATTATATTTTGAGACGGAGG 58.838 38.462 0.00 0.00 0.00 4.30
117 118 6.935208 GGCTAATTATATTTTGAGACGGAGGT 59.065 38.462 0.00 0.00 0.00 3.85
118 119 7.444487 GGCTAATTATATTTTGAGACGGAGGTT 59.556 37.037 0.00 0.00 0.00 3.50
119 120 8.283291 GCTAATTATATTTTGAGACGGAGGTTG 58.717 37.037 0.00 0.00 0.00 3.77
120 121 9.326413 CTAATTATATTTTGAGACGGAGGTTGT 57.674 33.333 0.00 0.00 0.00 3.32
122 123 8.658499 ATTATATTTTGAGACGGAGGTTGTAC 57.342 34.615 0.00 0.00 0.00 2.90
123 124 4.618920 ATTTTGAGACGGAGGTTGTACT 57.381 40.909 0.00 0.00 0.00 2.73
124 125 5.733620 ATTTTGAGACGGAGGTTGTACTA 57.266 39.130 0.00 0.00 0.00 1.82
125 126 5.534207 TTTTGAGACGGAGGTTGTACTAA 57.466 39.130 0.00 0.00 0.00 2.24
126 127 4.510038 TTGAGACGGAGGTTGTACTAAC 57.490 45.455 0.00 0.00 0.00 2.34
127 128 3.759581 TGAGACGGAGGTTGTACTAACT 58.240 45.455 0.00 0.00 0.00 2.24
128 129 4.910195 TGAGACGGAGGTTGTACTAACTA 58.090 43.478 0.00 0.00 0.00 2.24
129 130 5.316167 TGAGACGGAGGTTGTACTAACTAA 58.684 41.667 0.00 0.00 0.00 2.24
130 131 5.948162 TGAGACGGAGGTTGTACTAACTAAT 59.052 40.000 0.00 0.00 0.00 1.73
131 132 6.127814 TGAGACGGAGGTTGTACTAACTAATG 60.128 42.308 0.00 0.00 0.00 1.90
132 133 5.713861 AGACGGAGGTTGTACTAACTAATGT 59.286 40.000 0.00 0.00 0.00 2.71
133 134 6.886459 AGACGGAGGTTGTACTAACTAATGTA 59.114 38.462 0.00 0.00 0.00 2.29
134 135 6.856895 ACGGAGGTTGTACTAACTAATGTAC 58.143 40.000 0.00 0.00 39.37 2.90
135 136 6.660949 ACGGAGGTTGTACTAACTAATGTACT 59.339 38.462 0.00 0.00 39.57 2.73
136 137 7.829211 ACGGAGGTTGTACTAACTAATGTACTA 59.171 37.037 0.00 0.00 39.57 1.82
137 138 8.844244 CGGAGGTTGTACTAACTAATGTACTAT 58.156 37.037 0.00 0.00 39.57 2.12
141 142 9.962783 GGTTGTACTAACTAATGTACTATCTGG 57.037 37.037 0.00 0.00 39.57 3.86
142 143 9.962783 GTTGTACTAACTAATGTACTATCTGGG 57.037 37.037 0.00 0.00 39.57 4.45
143 144 9.925545 TTGTACTAACTAATGTACTATCTGGGA 57.074 33.333 0.00 0.00 39.57 4.37
144 145 9.347240 TGTACTAACTAATGTACTATCTGGGAC 57.653 37.037 0.00 0.00 39.57 4.46
145 146 9.571816 GTACTAACTAATGTACTATCTGGGACT 57.428 37.037 0.00 0.00 36.89 3.85
146 147 8.694581 ACTAACTAATGTACTATCTGGGACTC 57.305 38.462 0.00 0.00 0.00 3.36
147 148 6.636562 AACTAATGTACTATCTGGGACTCG 57.363 41.667 0.00 0.00 0.00 4.18
148 149 5.071370 ACTAATGTACTATCTGGGACTCGG 58.929 45.833 0.00 0.00 0.00 4.63
149 150 3.878237 ATGTACTATCTGGGACTCGGA 57.122 47.619 0.00 0.00 34.85 4.55
150 151 2.928334 TGTACTATCTGGGACTCGGAC 58.072 52.381 0.00 0.00 32.83 4.79
151 152 2.508716 TGTACTATCTGGGACTCGGACT 59.491 50.000 0.00 0.00 32.83 3.85
152 153 3.713248 TGTACTATCTGGGACTCGGACTA 59.287 47.826 0.00 0.00 32.83 2.59
153 154 3.495434 ACTATCTGGGACTCGGACTAG 57.505 52.381 0.00 0.00 32.83 2.57
154 155 2.106857 ACTATCTGGGACTCGGACTAGG 59.893 54.545 0.00 0.00 32.83 3.02
155 156 0.468400 ATCTGGGACTCGGACTAGGC 60.468 60.000 0.00 0.00 32.83 3.93
156 157 1.379977 CTGGGACTCGGACTAGGCA 60.380 63.158 0.00 0.00 0.00 4.75
157 158 0.970937 CTGGGACTCGGACTAGGCAA 60.971 60.000 0.00 0.00 0.00 4.52
158 159 0.970937 TGGGACTCGGACTAGGCAAG 60.971 60.000 0.00 0.00 0.00 4.01
159 160 0.683504 GGGACTCGGACTAGGCAAGA 60.684 60.000 0.00 0.00 0.00 3.02
160 161 1.404843 GGACTCGGACTAGGCAAGAT 58.595 55.000 0.00 0.00 0.00 2.40
161 162 1.757699 GGACTCGGACTAGGCAAGATT 59.242 52.381 0.00 0.00 0.00 2.40
162 163 2.957006 GGACTCGGACTAGGCAAGATTA 59.043 50.000 0.00 0.00 0.00 1.75
163 164 3.574826 GGACTCGGACTAGGCAAGATTAT 59.425 47.826 0.00 0.00 0.00 1.28
164 165 4.551388 GACTCGGACTAGGCAAGATTATG 58.449 47.826 0.00 0.00 0.00 1.90
165 166 3.961408 ACTCGGACTAGGCAAGATTATGT 59.039 43.478 0.00 0.00 0.00 2.29
166 167 4.202161 ACTCGGACTAGGCAAGATTATGTG 60.202 45.833 0.00 0.00 0.00 3.21
167 168 3.704566 TCGGACTAGGCAAGATTATGTGT 59.295 43.478 0.00 0.00 0.00 3.72
168 169 3.804325 CGGACTAGGCAAGATTATGTGTG 59.196 47.826 0.00 0.00 0.00 3.82
169 170 3.561725 GGACTAGGCAAGATTATGTGTGC 59.438 47.826 0.00 0.00 36.24 4.57
170 171 4.191544 GACTAGGCAAGATTATGTGTGCA 58.808 43.478 0.00 0.00 38.78 4.57
171 172 4.785301 ACTAGGCAAGATTATGTGTGCAT 58.215 39.130 0.00 0.00 38.78 3.96
172 173 4.818546 ACTAGGCAAGATTATGTGTGCATC 59.181 41.667 0.00 0.00 38.78 3.91
173 174 3.623703 AGGCAAGATTATGTGTGCATCA 58.376 40.909 0.00 0.00 38.78 3.07
174 175 4.018490 AGGCAAGATTATGTGTGCATCAA 58.982 39.130 0.00 0.00 38.78 2.57
175 176 4.647853 AGGCAAGATTATGTGTGCATCAAT 59.352 37.500 0.00 0.00 38.78 2.57
176 177 5.128171 AGGCAAGATTATGTGTGCATCAATT 59.872 36.000 0.00 0.00 38.78 2.32
177 178 5.233476 GGCAAGATTATGTGTGCATCAATTG 59.767 40.000 0.00 0.00 38.78 2.32
178 179 6.037726 GCAAGATTATGTGTGCATCAATTGA 58.962 36.000 11.26 11.26 36.97 2.57
179 180 6.700081 GCAAGATTATGTGTGCATCAATTGAT 59.300 34.615 15.36 15.36 36.97 2.57
188 189 2.795175 CATCAATTGATGCAGAGGCC 57.205 50.000 30.11 0.00 44.44 5.19
189 190 1.001706 CATCAATTGATGCAGAGGCCG 60.002 52.381 30.11 8.55 44.44 6.13
190 191 0.749091 TCAATTGATGCAGAGGCCGG 60.749 55.000 3.38 0.00 40.13 6.13
191 192 0.749091 CAATTGATGCAGAGGCCGGA 60.749 55.000 5.05 0.00 40.13 5.14
192 193 0.465097 AATTGATGCAGAGGCCGGAG 60.465 55.000 5.05 0.00 40.13 4.63
210 211 1.123928 AGGTTCAGCCTCCCTTATCG 58.876 55.000 0.00 0.00 46.96 2.92
211 212 0.106894 GGTTCAGCCTCCCTTATCGG 59.893 60.000 0.00 0.00 0.00 4.18
212 213 1.120530 GTTCAGCCTCCCTTATCGGA 58.879 55.000 0.00 0.00 33.16 4.55
213 214 1.485066 GTTCAGCCTCCCTTATCGGAA 59.515 52.381 0.00 0.00 33.16 4.30
214 215 1.874129 TCAGCCTCCCTTATCGGAAA 58.126 50.000 0.00 0.00 33.16 3.13
215 216 2.193127 TCAGCCTCCCTTATCGGAAAA 58.807 47.619 0.00 0.00 33.16 2.29
216 217 2.574369 TCAGCCTCCCTTATCGGAAAAA 59.426 45.455 0.00 0.00 33.16 1.94
217 218 2.945668 CAGCCTCCCTTATCGGAAAAAG 59.054 50.000 0.00 0.00 33.16 2.27
218 219 2.844348 AGCCTCCCTTATCGGAAAAAGA 59.156 45.455 5.34 0.00 33.16 2.52
219 220 3.265995 AGCCTCCCTTATCGGAAAAAGAA 59.734 43.478 5.34 0.00 33.16 2.52
220 221 4.014406 GCCTCCCTTATCGGAAAAAGAAA 58.986 43.478 5.34 0.00 33.16 2.52
221 222 4.142447 GCCTCCCTTATCGGAAAAAGAAAC 60.142 45.833 5.34 0.00 33.16 2.78
222 223 5.007682 CCTCCCTTATCGGAAAAAGAAACA 58.992 41.667 5.34 0.00 33.16 2.83
223 224 5.123979 CCTCCCTTATCGGAAAAAGAAACAG 59.876 44.000 5.34 0.00 33.16 3.16
224 225 5.007682 TCCCTTATCGGAAAAAGAAACAGG 58.992 41.667 5.34 0.00 33.16 4.00
225 226 4.765339 CCCTTATCGGAAAAAGAAACAGGT 59.235 41.667 5.34 0.00 33.16 4.00
226 227 5.106277 CCCTTATCGGAAAAAGAAACAGGTC 60.106 44.000 5.34 0.00 33.16 3.85
227 228 5.705905 CCTTATCGGAAAAAGAAACAGGTCT 59.294 40.000 5.34 0.00 33.16 3.85
228 229 6.348540 CCTTATCGGAAAAAGAAACAGGTCTG 60.349 42.308 5.34 0.00 33.16 3.51
229 230 8.649733 CCTTATCGGAAAAAGAAACAGGTCTGT 61.650 40.741 0.00 0.00 39.59 3.41
230 231 3.875134 TCGGAAAAAGAAACAGGTCTGTC 59.125 43.478 3.93 0.00 44.13 3.51
231 232 3.625764 CGGAAAAAGAAACAGGTCTGTCA 59.374 43.478 3.93 0.00 44.13 3.58
232 233 4.495844 CGGAAAAAGAAACAGGTCTGTCAC 60.496 45.833 3.93 2.41 44.13 3.67
233 234 4.640647 GGAAAAAGAAACAGGTCTGTCACT 59.359 41.667 3.93 4.52 44.13 3.41
234 235 5.820947 GGAAAAAGAAACAGGTCTGTCACTA 59.179 40.000 3.93 0.00 44.13 2.74
235 236 6.317893 GGAAAAAGAAACAGGTCTGTCACTAA 59.682 38.462 3.93 0.00 44.13 2.24
236 237 7.148137 GGAAAAAGAAACAGGTCTGTCACTAAA 60.148 37.037 3.93 0.00 44.13 1.85
237 238 7.696992 AAAAGAAACAGGTCTGTCACTAAAA 57.303 32.000 3.93 0.00 44.13 1.52
238 239 6.927294 AAGAAACAGGTCTGTCACTAAAAG 57.073 37.500 3.93 0.00 44.13 2.27
239 240 4.816925 AGAAACAGGTCTGTCACTAAAAGC 59.183 41.667 3.93 0.00 44.13 3.51
240 241 3.838244 ACAGGTCTGTCACTAAAAGCA 57.162 42.857 0.00 0.00 40.24 3.91
241 242 3.467803 ACAGGTCTGTCACTAAAAGCAC 58.532 45.455 0.00 0.00 40.24 4.40
242 243 3.118408 ACAGGTCTGTCACTAAAAGCACA 60.118 43.478 0.00 0.00 40.24 4.57
243 244 3.248602 CAGGTCTGTCACTAAAAGCACAC 59.751 47.826 0.00 0.00 0.00 3.82
244 245 2.548480 GGTCTGTCACTAAAAGCACACC 59.452 50.000 0.00 0.00 0.00 4.16
245 246 3.202906 GTCTGTCACTAAAAGCACACCA 58.797 45.455 0.00 0.00 0.00 4.17
246 247 3.625764 GTCTGTCACTAAAAGCACACCAA 59.374 43.478 0.00 0.00 0.00 3.67
247 248 4.095782 GTCTGTCACTAAAAGCACACCAAA 59.904 41.667 0.00 0.00 0.00 3.28
248 249 4.702612 TCTGTCACTAAAAGCACACCAAAA 59.297 37.500 0.00 0.00 0.00 2.44
249 250 4.992688 TGTCACTAAAAGCACACCAAAAG 58.007 39.130 0.00 0.00 0.00 2.27
250 251 4.461081 TGTCACTAAAAGCACACCAAAAGT 59.539 37.500 0.00 0.00 0.00 2.66
261 262 2.774439 ACCAAAAGTGAACGATGTGC 57.226 45.000 0.00 0.00 0.00 4.57
262 263 2.297701 ACCAAAAGTGAACGATGTGCT 58.702 42.857 0.00 0.00 0.00 4.40
263 264 2.290641 ACCAAAAGTGAACGATGTGCTC 59.709 45.455 0.00 0.00 0.00 4.26
264 265 2.290367 CCAAAAGTGAACGATGTGCTCA 59.710 45.455 0.00 0.00 0.00 4.26
265 266 3.058016 CCAAAAGTGAACGATGTGCTCAT 60.058 43.478 0.00 0.00 36.95 2.90
266 267 4.154015 CCAAAAGTGAACGATGTGCTCATA 59.846 41.667 0.32 0.00 34.06 2.15
267 268 5.334802 CCAAAAGTGAACGATGTGCTCATAA 60.335 40.000 0.32 0.00 34.06 1.90
268 269 6.317088 CAAAAGTGAACGATGTGCTCATAAT 58.683 36.000 0.32 0.00 34.06 1.28
269 270 6.500684 AAAGTGAACGATGTGCTCATAATT 57.499 33.333 0.32 0.00 34.06 1.40
270 271 5.725110 AGTGAACGATGTGCTCATAATTC 57.275 39.130 13.64 13.64 34.06 2.17
271 272 4.572389 AGTGAACGATGTGCTCATAATTCC 59.428 41.667 16.15 10.60 34.06 3.01
272 273 4.332543 GTGAACGATGTGCTCATAATTCCA 59.667 41.667 16.15 4.91 34.06 3.53
273 274 4.332543 TGAACGATGTGCTCATAATTCCAC 59.667 41.667 16.15 0.00 34.06 4.02
274 275 3.872696 ACGATGTGCTCATAATTCCACA 58.127 40.909 0.32 0.00 41.77 4.17
275 276 4.260985 ACGATGTGCTCATAATTCCACAA 58.739 39.130 0.32 0.00 41.02 3.33
276 277 4.883585 ACGATGTGCTCATAATTCCACAAT 59.116 37.500 0.32 0.00 41.02 2.71
277 278 5.209977 CGATGTGCTCATAATTCCACAATG 58.790 41.667 0.32 0.00 41.02 2.82
278 279 5.220912 CGATGTGCTCATAATTCCACAATGT 60.221 40.000 0.32 0.00 41.02 2.71
279 280 6.018016 CGATGTGCTCATAATTCCACAATGTA 60.018 38.462 0.32 0.00 41.02 2.29
280 281 7.308169 CGATGTGCTCATAATTCCACAATGTAT 60.308 37.037 0.32 0.00 41.02 2.29
281 282 7.643569 TGTGCTCATAATTCCACAATGTATT 57.356 32.000 0.00 0.00 35.48 1.89
282 283 7.482474 TGTGCTCATAATTCCACAATGTATTG 58.518 34.615 3.17 3.17 43.26 1.90
283 284 6.919662 GTGCTCATAATTCCACAATGTATTGG 59.080 38.462 9.22 0.00 41.96 3.16
284 285 6.606796 TGCTCATAATTCCACAATGTATTGGT 59.393 34.615 9.22 0.00 41.96 3.67
285 286 6.919662 GCTCATAATTCCACAATGTATTGGTG 59.080 38.462 9.22 5.29 41.96 4.17
286 287 6.804677 TCATAATTCCACAATGTATTGGTGC 58.195 36.000 9.22 0.00 41.96 5.01
287 288 6.606796 TCATAATTCCACAATGTATTGGTGCT 59.393 34.615 9.22 0.00 41.96 4.40
329 331 9.461312 ACCTTAATTATGCTTGTCATTAGTTCA 57.539 29.630 0.00 0.00 36.63 3.18
343 346 2.684001 AGTTCAACAAGACGTGGACA 57.316 45.000 0.00 0.00 0.00 4.02
368 371 0.040958 CCAAGAACGCACTCAGTTGC 60.041 55.000 0.00 0.00 39.28 4.17
383 386 2.156504 CAGTTGCTCTTTCACGCTACAG 59.843 50.000 0.00 0.00 34.98 2.74
385 388 0.670546 TGCTCTTTCACGCTACAGGC 60.671 55.000 0.00 0.00 37.64 4.85
386 389 0.670546 GCTCTTTCACGCTACAGGCA 60.671 55.000 0.00 0.00 41.91 4.75
387 390 1.795768 CTCTTTCACGCTACAGGCAA 58.204 50.000 0.00 0.00 41.91 4.52
392 395 4.391830 TCTTTCACGCTACAGGCAAAATAG 59.608 41.667 0.00 0.00 41.91 1.73
436 440 3.387374 ACCATAGCTCAGAACCTGATCTG 59.613 47.826 9.74 0.00 46.62 2.90
456 460 4.892934 TCTGTACAAGGTGAAAGCCAAAAT 59.107 37.500 0.00 0.00 32.25 1.82
523 530 3.474600 CCCATCAATCTCAACCTAGCTG 58.525 50.000 0.00 0.00 0.00 4.24
532 539 3.008049 TCTCAACCTAGCTGGAGTTTTCC 59.992 47.826 0.00 0.00 44.31 3.13
607 614 9.974980 TTTTCTCCTTTTTGGTAAACATGTATC 57.025 29.630 0.00 0.00 37.07 2.24
660 673 0.906756 AGAGGCTGCAGCAACTCCTA 60.907 55.000 37.63 0.00 44.36 2.94
693 706 2.126031 GTTGTCGAGGAGGCGGAC 60.126 66.667 0.00 0.00 0.00 4.79
708 721 2.574929 GACGGGCGGTACATCACA 59.425 61.111 0.00 0.00 0.00 3.58
777 790 3.976654 ACCAGGGTTATCATGTGCTAGAT 59.023 43.478 0.00 0.00 0.00 1.98
796 809 4.074970 AGATACCTTCAAGTGCAACCAAG 58.925 43.478 0.00 0.00 37.80 3.61
837 856 6.766429 TGAGGAAGTGATGGATAGATCATTG 58.234 40.000 0.00 0.00 34.86 2.82
890 909 0.581529 CGTGCCAACGCTGGTATATG 59.418 55.000 6.73 0.00 45.53 1.78
899 918 3.995199 ACGCTGGTATATGGAATCACAG 58.005 45.455 0.00 0.00 0.00 3.66
947 966 5.610398 AGGTGCCTTGTTAAATTTGGAAAG 58.390 37.500 0.00 1.75 0.00 2.62
1195 1214 5.698741 TGTATGGAATGATGAGAAGGTGT 57.301 39.130 0.00 0.00 0.00 4.16
1286 1305 4.037208 CACATCAGGGAGAATATTGGTTGC 59.963 45.833 0.00 0.00 0.00 4.17
1339 1358 6.062258 AGGATTGGAAATCTTTCTACCGAA 57.938 37.500 2.93 0.00 37.35 4.30
1599 1618 4.640771 TGCCAATATATTGAGGAGGGAC 57.359 45.455 24.17 6.06 40.14 4.46
1680 1699 3.684788 ACTTATCGATGTTTGGTGAGCAC 59.315 43.478 8.54 0.00 0.00 4.40
1710 1729 5.084722 GTCCGTGTTAGAATACGATATCCG 58.915 45.833 12.40 0.00 44.76 4.18
1914 1934 6.766467 CCCCTTATACTGAGTTCATTTACCAC 59.234 42.308 0.00 0.00 0.00 4.16
2104 2131 8.821686 ACCCATTACAATTGTCAGATTAATGA 57.178 30.769 22.41 0.00 0.00 2.57
2285 2313 8.775220 TTTTCATACACACTGTACATTTTTCG 57.225 30.769 0.00 0.00 35.42 3.46
2533 2564 7.405469 TTTAACATGTAAGCTGCATTTGTTG 57.595 32.000 15.21 4.93 0.00 3.33
2541 2572 7.312154 TGTAAGCTGCATTTGTTGTAATTAGG 58.688 34.615 1.02 0.00 0.00 2.69
2542 2573 4.747810 AGCTGCATTTGTTGTAATTAGGC 58.252 39.130 1.02 0.00 0.00 3.93
2549 2580 6.310224 GCATTTGTTGTAATTAGGCGAACATT 59.690 34.615 0.00 0.00 0.00 2.71
2604 2636 5.855925 TGTCACATATTTTCAATGCGTGAAC 59.144 36.000 2.31 0.00 46.09 3.18
2616 2648 6.647569 TCAATGCGTGAACATTTTCAAAATG 58.352 32.000 19.46 19.46 43.52 2.32
2695 2730 9.461312 AACATAAGTAAGAAAATGATAGTGCCA 57.539 29.630 0.00 0.00 0.00 4.92
2696 2731 9.632638 ACATAAGTAAGAAAATGATAGTGCCAT 57.367 29.630 0.00 0.00 0.00 4.40
2700 2735 8.668510 AGTAAGAAAATGATAGTGCCATAGTG 57.331 34.615 0.00 0.00 0.00 2.74
2701 2736 8.267894 AGTAAGAAAATGATAGTGCCATAGTGT 58.732 33.333 0.00 0.00 0.00 3.55
2702 2737 6.932356 AGAAAATGATAGTGCCATAGTGTG 57.068 37.500 0.00 0.00 0.00 3.82
2712 2747 2.627515 CCATAGTGTGGCAGCATACT 57.372 50.000 0.00 0.00 42.12 2.12
2714 2749 2.216046 CATAGTGTGGCAGCATACTGG 58.784 52.381 0.00 0.00 44.63 4.00
2715 2750 1.275666 TAGTGTGGCAGCATACTGGT 58.724 50.000 0.00 0.00 44.63 4.00
2716 2751 0.401738 AGTGTGGCAGCATACTGGTT 59.598 50.000 0.00 0.00 44.63 3.67
2717 2752 1.628340 AGTGTGGCAGCATACTGGTTA 59.372 47.619 0.00 0.00 44.63 2.85
2718 2753 2.009774 GTGTGGCAGCATACTGGTTAG 58.990 52.381 0.00 0.00 44.63 2.34
2719 2754 1.065491 TGTGGCAGCATACTGGTTAGG 60.065 52.381 0.00 0.00 44.63 2.69
2720 2755 0.107214 TGGCAGCATACTGGTTAGGC 60.107 55.000 0.00 0.00 44.63 3.93
2721 2756 0.107214 GGCAGCATACTGGTTAGGCA 60.107 55.000 0.00 0.00 44.63 4.75
2722 2757 1.303309 GCAGCATACTGGTTAGGCAG 58.697 55.000 0.00 0.00 44.63 4.85
2723 2758 1.407437 GCAGCATACTGGTTAGGCAGT 60.407 52.381 0.00 0.00 44.63 4.40
2724 2759 2.283298 CAGCATACTGGTTAGGCAGTG 58.717 52.381 0.00 0.00 40.11 3.66
2725 2760 2.093500 CAGCATACTGGTTAGGCAGTGA 60.093 50.000 0.00 0.00 40.11 3.41
2726 2761 2.093447 AGCATACTGGTTAGGCAGTGAC 60.093 50.000 0.00 0.00 40.11 3.67
2727 2762 2.354704 GCATACTGGTTAGGCAGTGACA 60.355 50.000 0.00 0.00 37.44 3.58
2728 2763 3.682718 GCATACTGGTTAGGCAGTGACAT 60.683 47.826 0.00 0.00 37.44 3.06
2729 2764 2.479566 ACTGGTTAGGCAGTGACATG 57.520 50.000 0.00 0.00 0.00 3.21
2730 2765 1.977854 ACTGGTTAGGCAGTGACATGA 59.022 47.619 0.00 0.00 0.00 3.07
2731 2766 2.371841 ACTGGTTAGGCAGTGACATGAA 59.628 45.455 0.00 0.00 0.00 2.57
2732 2767 2.744202 CTGGTTAGGCAGTGACATGAAC 59.256 50.000 0.00 0.00 0.00 3.18
2733 2768 2.105649 TGGTTAGGCAGTGACATGAACA 59.894 45.455 0.00 0.00 0.00 3.18
2734 2769 3.244875 TGGTTAGGCAGTGACATGAACAT 60.245 43.478 0.00 0.00 0.00 2.71
2735 2770 3.758554 GGTTAGGCAGTGACATGAACATT 59.241 43.478 0.00 0.00 0.00 2.71
2736 2771 4.218417 GGTTAGGCAGTGACATGAACATTT 59.782 41.667 0.00 0.00 0.00 2.32
2737 2772 5.414454 GGTTAGGCAGTGACATGAACATTTA 59.586 40.000 0.00 0.00 0.00 1.40
2738 2773 6.095440 GGTTAGGCAGTGACATGAACATTTAT 59.905 38.462 0.00 0.00 0.00 1.40
2739 2774 7.282224 GGTTAGGCAGTGACATGAACATTTATA 59.718 37.037 0.00 0.00 0.00 0.98
2740 2775 8.840321 GTTAGGCAGTGACATGAACATTTATAT 58.160 33.333 0.00 0.00 0.00 0.86
2741 2776 7.502120 AGGCAGTGACATGAACATTTATATC 57.498 36.000 0.00 0.00 0.00 1.63
2742 2777 6.203530 AGGCAGTGACATGAACATTTATATCG 59.796 38.462 0.00 0.00 0.00 2.92
2743 2778 6.202762 GGCAGTGACATGAACATTTATATCGA 59.797 38.462 0.00 0.00 0.00 3.59
2744 2779 7.254761 GGCAGTGACATGAACATTTATATCGAA 60.255 37.037 0.00 0.00 0.00 3.71
2745 2780 8.122330 GCAGTGACATGAACATTTATATCGAAA 58.878 33.333 0.00 0.00 0.00 3.46
2748 2783 8.895845 GTGACATGAACATTTATATCGAAATGC 58.104 33.333 0.00 0.00 46.39 3.56
2749 2784 8.075574 TGACATGAACATTTATATCGAAATGCC 58.924 33.333 0.00 4.76 46.39 4.40
2750 2785 7.939782 ACATGAACATTTATATCGAAATGCCA 58.060 30.769 0.00 8.86 46.39 4.92
2751 2786 7.862372 ACATGAACATTTATATCGAAATGCCAC 59.138 33.333 0.00 4.38 46.39 5.01
2752 2787 7.326968 TGAACATTTATATCGAAATGCCACA 57.673 32.000 9.81 6.23 46.39 4.17
2753 2788 7.939782 TGAACATTTATATCGAAATGCCACAT 58.060 30.769 9.81 0.00 46.39 3.21
2754 2789 8.075574 TGAACATTTATATCGAAATGCCACATC 58.924 33.333 9.81 4.02 46.39 3.06
2755 2790 7.750229 ACATTTATATCGAAATGCCACATCT 57.250 32.000 9.81 0.00 46.39 2.90
2756 2791 8.169977 ACATTTATATCGAAATGCCACATCTT 57.830 30.769 9.81 0.00 46.39 2.40
2757 2792 9.283768 ACATTTATATCGAAATGCCACATCTTA 57.716 29.630 9.81 0.00 46.39 2.10
2760 2795 8.902540 TTATATCGAAATGCCACATCTTAACT 57.097 30.769 0.00 0.00 0.00 2.24
2761 2796 9.990360 TTATATCGAAATGCCACATCTTAACTA 57.010 29.630 0.00 0.00 0.00 2.24
2762 2797 8.902540 ATATCGAAATGCCACATCTTAACTAA 57.097 30.769 0.00 0.00 0.00 2.24
2763 2798 7.624360 ATCGAAATGCCACATCTTAACTAAA 57.376 32.000 0.00 0.00 0.00 1.85
2764 2799 7.624360 TCGAAATGCCACATCTTAACTAAAT 57.376 32.000 0.00 0.00 0.00 1.40
2765 2800 8.050778 TCGAAATGCCACATCTTAACTAAATT 57.949 30.769 0.00 0.00 0.00 1.82
2766 2801 9.168451 TCGAAATGCCACATCTTAACTAAATTA 57.832 29.630 0.00 0.00 0.00 1.40
2767 2802 9.950680 CGAAATGCCACATCTTAACTAAATTAT 57.049 29.630 0.00 0.00 0.00 1.28
2840 2875 5.664294 AAAAATATTGCCTGACATCAGCA 57.336 34.783 3.18 3.07 42.47 4.41
2841 2876 5.864418 AAAATATTGCCTGACATCAGCAT 57.136 34.783 3.18 0.00 42.47 3.79
2842 2877 4.848562 AATATTGCCTGACATCAGCATG 57.151 40.909 3.18 0.00 42.47 4.06
2843 2878 1.399714 ATTGCCTGACATCAGCATGG 58.600 50.000 3.18 0.00 42.47 3.66
2844 2879 0.038599 TTGCCTGACATCAGCATGGT 59.961 50.000 3.18 0.00 42.47 3.55
2855 2890 2.921821 TCAGCATGGTGATACACATGG 58.078 47.619 23.20 0.00 35.86 3.66
2856 2891 2.239402 TCAGCATGGTGATACACATGGT 59.761 45.455 23.20 3.78 35.65 3.55
2857 2892 3.018856 CAGCATGGTGATACACATGGTT 58.981 45.455 20.20 0.00 34.31 3.67
2858 2893 4.080638 TCAGCATGGTGATACACATGGTTA 60.081 41.667 23.20 0.00 34.31 2.85
2859 2894 4.639755 CAGCATGGTGATACACATGGTTAA 59.360 41.667 20.20 0.00 34.31 2.01
2860 2895 5.300034 CAGCATGGTGATACACATGGTTAAT 59.700 40.000 20.20 0.00 34.31 1.40
2861 2896 5.300034 AGCATGGTGATACACATGGTTAATG 59.700 40.000 0.00 0.00 42.48 1.90
2862 2897 5.507817 GCATGGTGATACACATGGTTAATGG 60.508 44.000 0.00 0.00 40.94 3.16
2863 2898 4.531854 TGGTGATACACATGGTTAATGGG 58.468 43.478 0.00 0.00 46.03 4.00
2864 2899 4.228438 TGGTGATACACATGGTTAATGGGA 59.772 41.667 0.00 0.00 42.95 4.37
2865 2900 4.578928 GGTGATACACATGGTTAATGGGAC 59.421 45.833 0.00 0.00 42.95 4.46
2866 2901 4.272504 GTGATACACATGGTTAATGGGACG 59.727 45.833 0.00 0.00 42.95 4.79
2867 2902 4.162509 TGATACACATGGTTAATGGGACGA 59.837 41.667 0.00 0.00 42.95 4.20
2868 2903 2.706890 ACACATGGTTAATGGGACGAC 58.293 47.619 0.00 0.00 42.95 4.34
2869 2904 2.304761 ACACATGGTTAATGGGACGACT 59.695 45.455 0.00 0.00 42.95 4.18
2870 2905 2.936498 CACATGGTTAATGGGACGACTC 59.064 50.000 0.00 0.00 42.95 3.36
2871 2906 2.569853 ACATGGTTAATGGGACGACTCA 59.430 45.455 0.00 0.00 40.94 3.41
2872 2907 2.754946 TGGTTAATGGGACGACTCAC 57.245 50.000 0.00 0.00 0.00 3.51
2873 2908 1.972075 TGGTTAATGGGACGACTCACA 59.028 47.619 0.00 0.00 33.02 3.58
2874 2909 2.369203 TGGTTAATGGGACGACTCACAA 59.631 45.455 0.00 0.00 31.91 3.33
2875 2910 2.740447 GGTTAATGGGACGACTCACAAC 59.260 50.000 5.78 5.78 31.91 3.32
2876 2911 2.740447 GTTAATGGGACGACTCACAACC 59.260 50.000 0.00 0.00 31.91 3.77
2877 2912 0.762418 AATGGGACGACTCACAACCA 59.238 50.000 0.00 0.00 31.91 3.67
2878 2913 0.321671 ATGGGACGACTCACAACCAG 59.678 55.000 0.00 0.00 31.91 4.00
2879 2914 1.668151 GGGACGACTCACAACCAGC 60.668 63.158 0.00 0.00 0.00 4.85
2880 2915 1.367840 GGACGACTCACAACCAGCT 59.632 57.895 0.00 0.00 0.00 4.24
2881 2916 0.667792 GGACGACTCACAACCAGCTC 60.668 60.000 0.00 0.00 0.00 4.09
2882 2917 0.032130 GACGACTCACAACCAGCTCA 59.968 55.000 0.00 0.00 0.00 4.26
2883 2918 0.249489 ACGACTCACAACCAGCTCAC 60.249 55.000 0.00 0.00 0.00 3.51
2884 2919 0.032678 CGACTCACAACCAGCTCACT 59.967 55.000 0.00 0.00 0.00 3.41
2885 2920 1.506493 GACTCACAACCAGCTCACTG 58.494 55.000 0.00 0.00 44.05 3.66
2886 2921 0.833287 ACTCACAACCAGCTCACTGT 59.167 50.000 0.00 0.00 42.81 3.55
2887 2922 2.035961 GACTCACAACCAGCTCACTGTA 59.964 50.000 0.00 0.00 42.81 2.74
2888 2923 2.434336 ACTCACAACCAGCTCACTGTAA 59.566 45.455 0.00 0.00 42.81 2.41
2889 2924 3.062763 CTCACAACCAGCTCACTGTAAG 58.937 50.000 0.00 0.00 42.81 2.34
2890 2925 1.532868 CACAACCAGCTCACTGTAAGC 59.467 52.381 0.00 0.00 42.81 3.09
2891 2926 0.792640 CAACCAGCTCACTGTAAGCG 59.207 55.000 0.00 0.00 44.59 4.68
2892 2927 0.679505 AACCAGCTCACTGTAAGCGA 59.320 50.000 0.00 0.00 44.59 4.93
2893 2928 0.038159 ACCAGCTCACTGTAAGCGAC 60.038 55.000 0.00 0.00 44.59 5.19
2894 2929 1.073216 CCAGCTCACTGTAAGCGACG 61.073 60.000 0.00 0.00 44.59 5.12
2895 2930 1.444553 AGCTCACTGTAAGCGACGC 60.445 57.895 13.03 13.03 44.59 5.19
2896 2931 2.778997 GCTCACTGTAAGCGACGCG 61.779 63.158 15.18 3.53 37.60 6.01
2897 2932 1.154282 CTCACTGTAAGCGACGCGA 60.154 57.895 15.93 3.49 37.60 5.87
2898 2933 0.523546 CTCACTGTAAGCGACGCGAT 60.524 55.000 15.93 10.29 37.60 4.58
2899 2934 0.522705 TCACTGTAAGCGACGCGATC 60.523 55.000 15.93 5.79 37.60 3.69
2900 2935 0.523546 CACTGTAAGCGACGCGATCT 60.524 55.000 15.93 3.00 37.60 2.75
2901 2936 0.170561 ACTGTAAGCGACGCGATCTT 59.829 50.000 15.93 14.76 37.60 2.40
2902 2937 0.567968 CTGTAAGCGACGCGATCTTG 59.432 55.000 15.93 0.00 0.00 3.02
2903 2938 0.800683 TGTAAGCGACGCGATCTTGG 60.801 55.000 15.93 0.00 0.00 3.61
2904 2939 0.524816 GTAAGCGACGCGATCTTGGA 60.525 55.000 15.93 0.00 0.00 3.53
2905 2940 0.384309 TAAGCGACGCGATCTTGGAT 59.616 50.000 15.93 0.00 0.00 3.41
2906 2941 0.872021 AAGCGACGCGATCTTGGATC 60.872 55.000 15.93 0.00 0.00 3.36
2907 2942 2.639926 GCGACGCGATCTTGGATCG 61.640 63.158 15.93 20.97 43.72 3.69
2908 2943 1.298413 CGACGCGATCTTGGATCGT 60.298 57.895 24.21 11.41 42.90 3.73
2910 2945 2.923854 CGCGATCTTGGATCGTGC 59.076 61.111 23.58 11.90 43.50 5.34
2911 2946 1.878069 CGCGATCTTGGATCGTGCA 60.878 57.895 23.58 0.00 43.50 4.57
2912 2947 1.815212 CGCGATCTTGGATCGTGCAG 61.815 60.000 23.58 13.16 43.50 4.41
2913 2948 1.930100 CGATCTTGGATCGTGCAGC 59.070 57.895 18.16 0.00 36.84 5.25
2914 2949 0.807275 CGATCTTGGATCGTGCAGCA 60.807 55.000 18.16 0.00 36.84 4.41
2915 2950 1.372582 GATCTTGGATCGTGCAGCAA 58.627 50.000 0.00 0.00 0.00 3.91
2916 2951 1.329906 GATCTTGGATCGTGCAGCAAG 59.670 52.381 0.00 0.00 0.00 4.01
2917 2952 1.136147 CTTGGATCGTGCAGCAAGC 59.864 57.895 3.02 0.00 45.96 4.01
2927 2962 3.352447 GCAGCAAGCGAGACATAGA 57.648 52.632 0.00 0.00 0.00 1.98
2928 2963 0.926846 GCAGCAAGCGAGACATAGAC 59.073 55.000 0.00 0.00 0.00 2.59
2929 2964 1.470632 GCAGCAAGCGAGACATAGACT 60.471 52.381 0.00 0.00 0.00 3.24
2930 2965 2.458951 CAGCAAGCGAGACATAGACTC 58.541 52.381 0.00 0.00 0.00 3.36
2936 2971 2.042800 GAGACATAGACTCGCCCCC 58.957 63.158 0.00 0.00 0.00 5.40
2937 2972 0.755698 GAGACATAGACTCGCCCCCA 60.756 60.000 0.00 0.00 0.00 4.96
2938 2973 0.325296 AGACATAGACTCGCCCCCAA 60.325 55.000 0.00 0.00 0.00 4.12
2939 2974 0.759346 GACATAGACTCGCCCCCAAT 59.241 55.000 0.00 0.00 0.00 3.16
2940 2975 0.759346 ACATAGACTCGCCCCCAATC 59.241 55.000 0.00 0.00 0.00 2.67
2941 2976 0.758734 CATAGACTCGCCCCCAATCA 59.241 55.000 0.00 0.00 0.00 2.57
2942 2977 1.051812 ATAGACTCGCCCCCAATCAG 58.948 55.000 0.00 0.00 0.00 2.90
2943 2978 0.325296 TAGACTCGCCCCCAATCAGT 60.325 55.000 0.00 0.00 0.00 3.41
2944 2979 1.450312 GACTCGCCCCCAATCAGTG 60.450 63.158 0.00 0.00 0.00 3.66
2945 2980 2.825836 CTCGCCCCCAATCAGTGC 60.826 66.667 0.00 0.00 0.00 4.40
2946 2981 3.329889 TCGCCCCCAATCAGTGCT 61.330 61.111 0.00 0.00 0.00 4.40
2947 2982 1.971505 CTCGCCCCCAATCAGTGCTA 61.972 60.000 0.00 0.00 0.00 3.49
2948 2983 1.149174 CGCCCCCAATCAGTGCTAT 59.851 57.895 0.00 0.00 0.00 2.97
2949 2984 1.168407 CGCCCCCAATCAGTGCTATG 61.168 60.000 0.00 0.00 0.00 2.23
2950 2985 1.458639 GCCCCCAATCAGTGCTATGC 61.459 60.000 0.00 0.00 0.00 3.14
2951 2986 0.825010 CCCCCAATCAGTGCTATGCC 60.825 60.000 0.00 0.00 0.00 4.40
2952 2987 1.168407 CCCCAATCAGTGCTATGCCG 61.168 60.000 0.00 0.00 0.00 5.69
2953 2988 0.179048 CCCAATCAGTGCTATGCCGA 60.179 55.000 0.00 0.00 0.00 5.54
2954 2989 1.544093 CCCAATCAGTGCTATGCCGAT 60.544 52.381 0.00 0.00 0.00 4.18
2955 2990 1.534163 CCAATCAGTGCTATGCCGATG 59.466 52.381 0.00 0.00 0.00 3.84
2956 2991 1.069432 CAATCAGTGCTATGCCGATGC 60.069 52.381 0.00 0.00 38.26 3.91
2957 2992 0.395686 ATCAGTGCTATGCCGATGCT 59.604 50.000 0.00 0.00 38.71 3.79
2958 2993 0.531311 TCAGTGCTATGCCGATGCTG 60.531 55.000 0.00 0.00 38.71 4.41
2959 2994 0.812811 CAGTGCTATGCCGATGCTGT 60.813 55.000 0.00 0.00 38.71 4.40
2960 2995 0.531532 AGTGCTATGCCGATGCTGTC 60.532 55.000 0.00 0.00 38.71 3.51
2961 2996 0.531532 GTGCTATGCCGATGCTGTCT 60.532 55.000 0.00 0.00 38.71 3.41
2962 2997 0.178767 TGCTATGCCGATGCTGTCTT 59.821 50.000 0.00 0.00 38.71 3.01
2963 2998 1.303309 GCTATGCCGATGCTGTCTTT 58.697 50.000 0.00 0.00 38.71 2.52
2964 2999 1.672881 GCTATGCCGATGCTGTCTTTT 59.327 47.619 0.00 0.00 38.71 2.27
2965 3000 2.286654 GCTATGCCGATGCTGTCTTTTC 60.287 50.000 0.00 0.00 38.71 2.29
2966 3001 1.825090 ATGCCGATGCTGTCTTTTCA 58.175 45.000 0.00 0.00 38.71 2.69
2967 3002 0.874390 TGCCGATGCTGTCTTTTCAC 59.126 50.000 0.00 0.00 38.71 3.18
2968 3003 0.169009 GCCGATGCTGTCTTTTCACC 59.831 55.000 0.00 0.00 33.53 4.02
2969 3004 1.813513 CCGATGCTGTCTTTTCACCT 58.186 50.000 0.00 0.00 0.00 4.00
2970 3005 2.154462 CCGATGCTGTCTTTTCACCTT 58.846 47.619 0.00 0.00 0.00 3.50
2971 3006 2.160417 CCGATGCTGTCTTTTCACCTTC 59.840 50.000 0.00 0.00 0.00 3.46
2972 3007 2.807967 CGATGCTGTCTTTTCACCTTCA 59.192 45.455 0.00 0.00 0.00 3.02
2973 3008 3.120408 CGATGCTGTCTTTTCACCTTCAG 60.120 47.826 0.00 0.00 0.00 3.02
2974 3009 3.558931 TGCTGTCTTTTCACCTTCAGA 57.441 42.857 0.00 0.00 0.00 3.27
2975 3010 3.470709 TGCTGTCTTTTCACCTTCAGAG 58.529 45.455 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.330074 AGCAAAGCAATATGTGTACGACTC 59.670 41.667 0.00 0.00 0.00 3.36
1 2 4.253685 AGCAAAGCAATATGTGTACGACT 58.746 39.130 0.00 0.00 0.00 4.18
3 4 6.761242 AGATTAGCAAAGCAATATGTGTACGA 59.239 34.615 0.00 0.00 0.00 3.43
4 5 6.948353 AGATTAGCAAAGCAATATGTGTACG 58.052 36.000 0.00 0.00 0.00 3.67
7 8 9.123902 TGATTAGATTAGCAAAGCAATATGTGT 57.876 29.630 0.00 0.00 0.00 3.72
8 9 9.390795 GTGATTAGATTAGCAAAGCAATATGTG 57.609 33.333 0.00 0.00 0.00 3.21
9 10 9.123902 TGTGATTAGATTAGCAAAGCAATATGT 57.876 29.630 0.00 0.00 0.00 2.29
11 12 9.123902 TGTGTGATTAGATTAGCAAAGCAATAT 57.876 29.630 0.00 0.00 0.00 1.28
12 13 8.504812 TGTGTGATTAGATTAGCAAAGCAATA 57.495 30.769 0.00 0.00 0.00 1.90
13 14 7.395190 TGTGTGATTAGATTAGCAAAGCAAT 57.605 32.000 0.00 0.00 0.00 3.56
14 15 6.623549 GCTGTGTGATTAGATTAGCAAAGCAA 60.624 38.462 0.00 0.00 37.21 3.91
15 16 5.163723 GCTGTGTGATTAGATTAGCAAAGCA 60.164 40.000 0.00 0.00 37.21 3.91
16 17 5.163723 TGCTGTGTGATTAGATTAGCAAAGC 60.164 40.000 0.00 0.00 36.83 3.51
17 18 6.426980 TGCTGTGTGATTAGATTAGCAAAG 57.573 37.500 0.00 0.00 36.83 2.77
18 19 6.816134 TTGCTGTGTGATTAGATTAGCAAA 57.184 33.333 0.00 0.00 43.94 3.68
20 21 8.681486 AATATTGCTGTGTGATTAGATTAGCA 57.319 30.769 0.00 0.00 37.85 3.49
25 26 9.836864 TGTCTAAATATTGCTGTGTGATTAGAT 57.163 29.630 0.00 0.00 32.61 1.98
26 27 9.317936 CTGTCTAAATATTGCTGTGTGATTAGA 57.682 33.333 0.00 0.00 0.00 2.10
27 28 9.317936 TCTGTCTAAATATTGCTGTGTGATTAG 57.682 33.333 0.00 0.00 0.00 1.73
28 29 9.665719 TTCTGTCTAAATATTGCTGTGTGATTA 57.334 29.630 0.00 0.00 0.00 1.75
29 30 8.565896 TTCTGTCTAAATATTGCTGTGTGATT 57.434 30.769 0.00 0.00 0.00 2.57
30 31 7.826252 ACTTCTGTCTAAATATTGCTGTGTGAT 59.174 33.333 0.00 0.00 0.00 3.06
31 32 7.161404 ACTTCTGTCTAAATATTGCTGTGTGA 58.839 34.615 0.00 0.00 0.00 3.58
32 33 7.369803 ACTTCTGTCTAAATATTGCTGTGTG 57.630 36.000 0.00 0.00 0.00 3.82
33 34 8.314751 AGTACTTCTGTCTAAATATTGCTGTGT 58.685 33.333 0.00 0.00 0.00 3.72
34 35 8.709386 AGTACTTCTGTCTAAATATTGCTGTG 57.291 34.615 0.00 0.00 0.00 3.66
35 36 9.804758 GTAGTACTTCTGTCTAAATATTGCTGT 57.195 33.333 0.00 0.00 0.00 4.40
36 37 9.250624 GGTAGTACTTCTGTCTAAATATTGCTG 57.749 37.037 0.00 0.00 0.00 4.41
37 38 9.203163 AGGTAGTACTTCTGTCTAAATATTGCT 57.797 33.333 0.00 0.00 0.00 3.91
38 39 9.465985 GAGGTAGTACTTCTGTCTAAATATTGC 57.534 37.037 0.00 0.00 0.00 3.56
39 40 9.968870 GGAGGTAGTACTTCTGTCTAAATATTG 57.031 37.037 11.75 0.00 0.00 1.90
40 41 8.848182 CGGAGGTAGTACTTCTGTCTAAATATT 58.152 37.037 12.07 0.00 0.00 1.28
41 42 7.997803 ACGGAGGTAGTACTTCTGTCTAAATAT 59.002 37.037 18.54 0.00 39.24 1.28
42 43 7.341805 ACGGAGGTAGTACTTCTGTCTAAATA 58.658 38.462 18.54 0.00 39.24 1.40
43 44 6.186234 ACGGAGGTAGTACTTCTGTCTAAAT 58.814 40.000 18.54 0.00 39.24 1.40
44 45 5.564550 ACGGAGGTAGTACTTCTGTCTAAA 58.435 41.667 18.54 0.00 39.24 1.85
45 46 5.171339 ACGGAGGTAGTACTTCTGTCTAA 57.829 43.478 18.54 0.00 39.24 2.10
46 47 4.833478 ACGGAGGTAGTACTTCTGTCTA 57.167 45.455 18.54 0.00 39.24 2.59
47 48 3.717452 ACGGAGGTAGTACTTCTGTCT 57.283 47.619 18.54 0.57 39.24 3.41
49 50 3.008813 TGAGACGGAGGTAGTACTTCTGT 59.991 47.826 22.93 22.93 45.03 3.41
50 51 3.607741 TGAGACGGAGGTAGTACTTCTG 58.392 50.000 17.35 17.35 36.72 3.02
51 52 3.996921 TGAGACGGAGGTAGTACTTCT 57.003 47.619 11.75 0.00 0.00 2.85
52 53 4.699257 TCTTTGAGACGGAGGTAGTACTTC 59.301 45.833 0.00 3.85 0.00 3.01
53 54 4.660168 TCTTTGAGACGGAGGTAGTACTT 58.340 43.478 0.00 0.00 0.00 2.24
54 55 4.298103 TCTTTGAGACGGAGGTAGTACT 57.702 45.455 0.00 0.00 0.00 2.73
55 56 5.579564 ATTCTTTGAGACGGAGGTAGTAC 57.420 43.478 0.00 0.00 0.00 2.73
56 57 9.011095 CATATATTCTTTGAGACGGAGGTAGTA 57.989 37.037 0.00 0.00 0.00 1.82
57 58 7.724506 TCATATATTCTTTGAGACGGAGGTAGT 59.275 37.037 0.00 0.00 0.00 2.73
58 59 8.112016 TCATATATTCTTTGAGACGGAGGTAG 57.888 38.462 0.00 0.00 0.00 3.18
59 60 8.651589 ATCATATATTCTTTGAGACGGAGGTA 57.348 34.615 0.00 0.00 0.00 3.08
60 61 6.978674 TCATATATTCTTTGAGACGGAGGT 57.021 37.500 0.00 0.00 0.00 3.85
89 90 9.706691 CTCCGTCTCAAAATATAATTAGCCTAA 57.293 33.333 0.00 0.00 0.00 2.69
90 91 8.311836 CCTCCGTCTCAAAATATAATTAGCCTA 58.688 37.037 0.00 0.00 0.00 3.93
91 92 7.162082 CCTCCGTCTCAAAATATAATTAGCCT 58.838 38.462 0.00 0.00 0.00 4.58
92 93 6.935208 ACCTCCGTCTCAAAATATAATTAGCC 59.065 38.462 0.00 0.00 0.00 3.93
93 94 7.964604 ACCTCCGTCTCAAAATATAATTAGC 57.035 36.000 0.00 0.00 0.00 3.09
94 95 9.326413 ACAACCTCCGTCTCAAAATATAATTAG 57.674 33.333 0.00 0.00 0.00 1.73
96 97 9.106070 GTACAACCTCCGTCTCAAAATATAATT 57.894 33.333 0.00 0.00 0.00 1.40
97 98 8.483758 AGTACAACCTCCGTCTCAAAATATAAT 58.516 33.333 0.00 0.00 0.00 1.28
98 99 7.844009 AGTACAACCTCCGTCTCAAAATATAA 58.156 34.615 0.00 0.00 0.00 0.98
99 100 7.414222 AGTACAACCTCCGTCTCAAAATATA 57.586 36.000 0.00 0.00 0.00 0.86
100 101 6.295719 AGTACAACCTCCGTCTCAAAATAT 57.704 37.500 0.00 0.00 0.00 1.28
101 102 5.733620 AGTACAACCTCCGTCTCAAAATA 57.266 39.130 0.00 0.00 0.00 1.40
102 103 4.618920 AGTACAACCTCCGTCTCAAAAT 57.381 40.909 0.00 0.00 0.00 1.82
103 104 5.069516 AGTTAGTACAACCTCCGTCTCAAAA 59.930 40.000 0.00 0.00 0.00 2.44
104 105 4.586001 AGTTAGTACAACCTCCGTCTCAAA 59.414 41.667 0.00 0.00 0.00 2.69
105 106 4.147321 AGTTAGTACAACCTCCGTCTCAA 58.853 43.478 0.00 0.00 0.00 3.02
106 107 3.759581 AGTTAGTACAACCTCCGTCTCA 58.240 45.455 0.00 0.00 0.00 3.27
107 108 5.886960 TTAGTTAGTACAACCTCCGTCTC 57.113 43.478 0.00 0.00 0.00 3.36
108 109 5.713861 ACATTAGTTAGTACAACCTCCGTCT 59.286 40.000 0.00 0.00 0.00 4.18
109 110 5.958955 ACATTAGTTAGTACAACCTCCGTC 58.041 41.667 0.00 0.00 0.00 4.79
110 111 5.990120 ACATTAGTTAGTACAACCTCCGT 57.010 39.130 0.00 0.00 0.00 4.69
111 112 7.093322 AGTACATTAGTTAGTACAACCTCCG 57.907 40.000 0.00 0.00 42.26 4.63
115 116 9.962783 CCAGATAGTACATTAGTTAGTACAACC 57.037 37.037 0.00 0.00 42.26 3.77
116 117 9.962783 CCCAGATAGTACATTAGTTAGTACAAC 57.037 37.037 0.00 0.00 42.26 3.32
117 118 9.925545 TCCCAGATAGTACATTAGTTAGTACAA 57.074 33.333 0.00 0.00 42.26 2.41
118 119 9.347240 GTCCCAGATAGTACATTAGTTAGTACA 57.653 37.037 0.00 0.00 42.26 2.90
119 120 9.571816 AGTCCCAGATAGTACATTAGTTAGTAC 57.428 37.037 0.00 0.00 40.60 2.73
120 121 9.790344 GAGTCCCAGATAGTACATTAGTTAGTA 57.210 37.037 0.00 0.00 0.00 1.82
121 122 7.444792 CGAGTCCCAGATAGTACATTAGTTAGT 59.555 40.741 0.00 0.00 0.00 2.24
122 123 7.094720 CCGAGTCCCAGATAGTACATTAGTTAG 60.095 44.444 0.00 0.00 0.00 2.34
123 124 6.713903 CCGAGTCCCAGATAGTACATTAGTTA 59.286 42.308 0.00 0.00 0.00 2.24
124 125 5.535406 CCGAGTCCCAGATAGTACATTAGTT 59.465 44.000 0.00 0.00 0.00 2.24
125 126 5.071370 CCGAGTCCCAGATAGTACATTAGT 58.929 45.833 0.00 0.00 0.00 2.24
126 127 5.181622 GTCCGAGTCCCAGATAGTACATTAG 59.818 48.000 0.00 0.00 0.00 1.73
127 128 5.068636 GTCCGAGTCCCAGATAGTACATTA 58.931 45.833 0.00 0.00 0.00 1.90
128 129 3.890147 GTCCGAGTCCCAGATAGTACATT 59.110 47.826 0.00 0.00 0.00 2.71
129 130 3.138653 AGTCCGAGTCCCAGATAGTACAT 59.861 47.826 0.00 0.00 0.00 2.29
130 131 2.508716 AGTCCGAGTCCCAGATAGTACA 59.491 50.000 0.00 0.00 0.00 2.90
131 132 3.211718 AGTCCGAGTCCCAGATAGTAC 57.788 52.381 0.00 0.00 0.00 2.73
132 133 3.327172 CCTAGTCCGAGTCCCAGATAGTA 59.673 52.174 0.00 0.00 0.00 1.82
133 134 2.106857 CCTAGTCCGAGTCCCAGATAGT 59.893 54.545 0.00 0.00 0.00 2.12
134 135 2.785562 CCTAGTCCGAGTCCCAGATAG 58.214 57.143 0.00 0.00 0.00 2.08
135 136 1.202903 GCCTAGTCCGAGTCCCAGATA 60.203 57.143 0.00 0.00 0.00 1.98
136 137 0.468400 GCCTAGTCCGAGTCCCAGAT 60.468 60.000 0.00 0.00 0.00 2.90
137 138 1.076923 GCCTAGTCCGAGTCCCAGA 60.077 63.158 0.00 0.00 0.00 3.86
138 139 0.970937 TTGCCTAGTCCGAGTCCCAG 60.971 60.000 0.00 0.00 0.00 4.45
139 140 0.970937 CTTGCCTAGTCCGAGTCCCA 60.971 60.000 0.00 0.00 0.00 4.37
140 141 0.683504 TCTTGCCTAGTCCGAGTCCC 60.684 60.000 0.00 0.00 0.00 4.46
141 142 1.404843 ATCTTGCCTAGTCCGAGTCC 58.595 55.000 0.00 0.00 0.00 3.85
142 143 4.038162 ACATAATCTTGCCTAGTCCGAGTC 59.962 45.833 0.00 0.00 0.00 3.36
143 144 3.961408 ACATAATCTTGCCTAGTCCGAGT 59.039 43.478 0.00 0.00 0.00 4.18
144 145 4.202161 ACACATAATCTTGCCTAGTCCGAG 60.202 45.833 0.00 0.00 0.00 4.63
145 146 3.704566 ACACATAATCTTGCCTAGTCCGA 59.295 43.478 0.00 0.00 0.00 4.55
146 147 3.804325 CACACATAATCTTGCCTAGTCCG 59.196 47.826 0.00 0.00 0.00 4.79
147 148 3.561725 GCACACATAATCTTGCCTAGTCC 59.438 47.826 0.00 0.00 0.00 3.85
148 149 4.191544 TGCACACATAATCTTGCCTAGTC 58.808 43.478 0.00 0.00 33.86 2.59
149 150 4.220693 TGCACACATAATCTTGCCTAGT 57.779 40.909 0.00 0.00 33.86 2.57
150 151 4.818005 TGATGCACACATAATCTTGCCTAG 59.182 41.667 0.00 0.00 36.35 3.02
151 152 4.779696 TGATGCACACATAATCTTGCCTA 58.220 39.130 0.00 0.00 36.35 3.93
152 153 3.623703 TGATGCACACATAATCTTGCCT 58.376 40.909 0.00 0.00 36.35 4.75
153 154 4.374843 TTGATGCACACATAATCTTGCC 57.625 40.909 0.00 0.00 36.35 4.52
154 155 6.037726 TCAATTGATGCACACATAATCTTGC 58.962 36.000 3.38 0.00 36.35 4.01
155 156 8.061125 CATCAATTGATGCACACATAATCTTG 57.939 34.615 30.11 7.66 44.44 3.02
170 171 1.315690 CGGCCTCTGCATCAATTGAT 58.684 50.000 15.36 15.36 40.13 2.57
171 172 0.749091 CCGGCCTCTGCATCAATTGA 60.749 55.000 11.26 11.26 40.13 2.57
172 173 0.749091 TCCGGCCTCTGCATCAATTG 60.749 55.000 0.00 0.00 40.13 2.32
173 174 0.465097 CTCCGGCCTCTGCATCAATT 60.465 55.000 0.00 0.00 40.13 2.32
174 175 1.147824 CTCCGGCCTCTGCATCAAT 59.852 57.895 0.00 0.00 40.13 2.57
175 176 2.586245 CTCCGGCCTCTGCATCAA 59.414 61.111 0.00 0.00 40.13 2.57
176 177 3.473647 CCTCCGGCCTCTGCATCA 61.474 66.667 0.00 0.00 40.13 3.07
177 178 2.932130 GAACCTCCGGCCTCTGCATC 62.932 65.000 0.00 0.00 40.13 3.91
178 179 3.011517 AACCTCCGGCCTCTGCAT 61.012 61.111 0.00 0.00 40.13 3.96
179 180 3.706373 GAACCTCCGGCCTCTGCA 61.706 66.667 0.00 0.00 40.13 4.41
180 181 3.672295 CTGAACCTCCGGCCTCTGC 62.672 68.421 0.00 0.00 0.00 4.26
181 182 2.581354 CTGAACCTCCGGCCTCTG 59.419 66.667 0.00 0.00 0.00 3.35
182 183 3.394836 GCTGAACCTCCGGCCTCT 61.395 66.667 0.00 0.00 32.43 3.69
191 192 4.639674 TCCGATAAGGGAGGCTGAACCT 62.640 54.545 0.00 0.00 46.59 3.50
192 193 0.106894 CCGATAAGGGAGGCTGAACC 59.893 60.000 0.00 0.00 35.67 3.62
193 194 1.120530 TCCGATAAGGGAGGCTGAAC 58.879 55.000 0.00 0.00 41.52 3.18
194 195 1.874129 TTCCGATAAGGGAGGCTGAA 58.126 50.000 0.00 0.00 41.52 3.02
195 196 1.874129 TTTCCGATAAGGGAGGCTGA 58.126 50.000 0.00 0.00 41.52 4.26
196 197 2.710096 TTTTCCGATAAGGGAGGCTG 57.290 50.000 0.00 0.00 41.52 4.85
197 198 2.844348 TCTTTTTCCGATAAGGGAGGCT 59.156 45.455 0.00 0.00 41.52 4.58
198 199 3.277142 TCTTTTTCCGATAAGGGAGGC 57.723 47.619 0.00 0.00 41.52 4.70
199 200 5.007682 TGTTTCTTTTTCCGATAAGGGAGG 58.992 41.667 0.00 0.00 41.52 4.30
200 201 5.123979 CCTGTTTCTTTTTCCGATAAGGGAG 59.876 44.000 0.00 0.00 41.52 4.30
201 202 5.007682 CCTGTTTCTTTTTCCGATAAGGGA 58.992 41.667 0.00 0.00 41.52 4.20
202 203 4.765339 ACCTGTTTCTTTTTCCGATAAGGG 59.235 41.667 0.00 0.00 41.52 3.95
203 204 5.705905 AGACCTGTTTCTTTTTCCGATAAGG 59.294 40.000 0.00 0.00 42.97 2.69
204 205 6.204882 ACAGACCTGTTTCTTTTTCCGATAAG 59.795 38.462 0.00 0.00 41.83 1.73
205 206 6.059484 ACAGACCTGTTTCTTTTTCCGATAA 58.941 36.000 0.00 0.00 41.83 1.75
206 207 5.617252 ACAGACCTGTTTCTTTTTCCGATA 58.383 37.500 0.00 0.00 41.83 2.92
207 208 4.461198 ACAGACCTGTTTCTTTTTCCGAT 58.539 39.130 0.00 0.00 41.83 4.18
208 209 3.875134 GACAGACCTGTTTCTTTTTCCGA 59.125 43.478 3.98 0.00 45.05 4.55
209 210 3.625764 TGACAGACCTGTTTCTTTTTCCG 59.374 43.478 3.98 0.00 45.05 4.30
210 211 4.640647 AGTGACAGACCTGTTTCTTTTTCC 59.359 41.667 3.98 0.00 45.05 3.13
211 212 5.819825 AGTGACAGACCTGTTTCTTTTTC 57.180 39.130 3.98 0.00 45.05 2.29
212 213 7.696992 TTTAGTGACAGACCTGTTTCTTTTT 57.303 32.000 3.98 0.00 45.05 1.94
213 214 7.628580 GCTTTTAGTGACAGACCTGTTTCTTTT 60.629 37.037 3.98 0.00 45.05 2.27
214 215 6.183360 GCTTTTAGTGACAGACCTGTTTCTTT 60.183 38.462 3.98 0.00 45.05 2.52
215 216 5.297029 GCTTTTAGTGACAGACCTGTTTCTT 59.703 40.000 3.98 0.00 45.05 2.52
216 217 4.816925 GCTTTTAGTGACAGACCTGTTTCT 59.183 41.667 3.98 8.26 45.05 2.52
217 218 4.574828 TGCTTTTAGTGACAGACCTGTTTC 59.425 41.667 3.98 1.58 45.05 2.78
218 219 4.335594 GTGCTTTTAGTGACAGACCTGTTT 59.664 41.667 3.98 0.00 45.05 2.83
219 220 3.877508 GTGCTTTTAGTGACAGACCTGTT 59.122 43.478 3.98 0.00 45.05 3.16
221 222 3.248602 GTGTGCTTTTAGTGACAGACCTG 59.751 47.826 0.00 0.00 0.00 4.00
222 223 3.467803 GTGTGCTTTTAGTGACAGACCT 58.532 45.455 0.00 0.00 0.00 3.85
223 224 2.548480 GGTGTGCTTTTAGTGACAGACC 59.452 50.000 0.00 0.00 39.00 3.85
224 225 3.202906 TGGTGTGCTTTTAGTGACAGAC 58.797 45.455 0.00 0.00 0.00 3.51
225 226 3.552132 TGGTGTGCTTTTAGTGACAGA 57.448 42.857 0.00 0.00 0.00 3.41
226 227 4.630894 TTTGGTGTGCTTTTAGTGACAG 57.369 40.909 0.00 0.00 0.00 3.51
227 228 4.461081 ACTTTTGGTGTGCTTTTAGTGACA 59.539 37.500 0.00 0.00 0.00 3.58
228 229 4.798387 CACTTTTGGTGTGCTTTTAGTGAC 59.202 41.667 0.00 0.00 40.79 3.67
229 230 4.702612 TCACTTTTGGTGTGCTTTTAGTGA 59.297 37.500 0.00 0.00 45.50 3.41
230 231 4.992688 TCACTTTTGGTGTGCTTTTAGTG 58.007 39.130 0.00 0.00 45.50 2.74
231 232 5.407502 GTTCACTTTTGGTGTGCTTTTAGT 58.592 37.500 0.00 0.00 45.50 2.24
232 233 4.499040 CGTTCACTTTTGGTGTGCTTTTAG 59.501 41.667 0.00 0.00 45.50 1.85
233 234 4.156190 TCGTTCACTTTTGGTGTGCTTTTA 59.844 37.500 0.00 0.00 45.50 1.52
234 235 3.057174 TCGTTCACTTTTGGTGTGCTTTT 60.057 39.130 0.00 0.00 45.50 2.27
235 236 2.490115 TCGTTCACTTTTGGTGTGCTTT 59.510 40.909 0.00 0.00 45.50 3.51
236 237 2.088423 TCGTTCACTTTTGGTGTGCTT 58.912 42.857 0.00 0.00 45.50 3.91
237 238 1.745232 TCGTTCACTTTTGGTGTGCT 58.255 45.000 0.00 0.00 45.50 4.40
238 239 2.223479 ACATCGTTCACTTTTGGTGTGC 60.223 45.455 0.00 0.00 45.50 4.57
239 240 3.362295 CACATCGTTCACTTTTGGTGTG 58.638 45.455 0.00 0.00 45.50 3.82
240 241 2.223479 GCACATCGTTCACTTTTGGTGT 60.223 45.455 0.00 0.00 45.50 4.16
241 242 2.033299 AGCACATCGTTCACTTTTGGTG 59.967 45.455 0.00 0.00 46.60 4.17
242 243 2.290641 GAGCACATCGTTCACTTTTGGT 59.709 45.455 0.00 0.00 0.00 3.67
243 244 2.290367 TGAGCACATCGTTCACTTTTGG 59.710 45.455 0.00 0.00 28.60 3.28
244 245 3.607422 TGAGCACATCGTTCACTTTTG 57.393 42.857 0.00 0.00 28.60 2.44
245 246 5.940192 TTATGAGCACATCGTTCACTTTT 57.060 34.783 0.00 0.00 37.71 2.27
246 247 6.403636 GGAATTATGAGCACATCGTTCACTTT 60.404 38.462 17.05 0.00 37.71 2.66
247 248 5.065218 GGAATTATGAGCACATCGTTCACTT 59.935 40.000 17.05 0.00 37.71 3.16
248 249 4.572389 GGAATTATGAGCACATCGTTCACT 59.428 41.667 17.05 0.00 37.71 3.41
249 250 4.332543 TGGAATTATGAGCACATCGTTCAC 59.667 41.667 17.05 10.51 37.71 3.18
250 251 4.332543 GTGGAATTATGAGCACATCGTTCA 59.667 41.667 17.05 2.61 39.39 3.18
251 252 4.332543 TGTGGAATTATGAGCACATCGTTC 59.667 41.667 0.00 6.41 37.87 3.95
252 253 4.260985 TGTGGAATTATGAGCACATCGTT 58.739 39.130 0.00 0.00 37.87 3.85
253 254 3.872696 TGTGGAATTATGAGCACATCGT 58.127 40.909 0.00 0.00 37.87 3.73
254 255 4.880886 TTGTGGAATTATGAGCACATCG 57.119 40.909 0.00 0.00 37.87 3.84
255 256 6.140303 ACATTGTGGAATTATGAGCACATC 57.860 37.500 0.00 0.00 37.87 3.06
256 257 7.828508 ATACATTGTGGAATTATGAGCACAT 57.171 32.000 1.31 1.31 40.16 3.21
257 258 7.416551 CCAATACATTGTGGAATTATGAGCACA 60.417 37.037 0.00 0.00 37.03 4.57
258 259 6.919662 CCAATACATTGTGGAATTATGAGCAC 59.080 38.462 0.00 0.00 37.03 4.40
259 260 6.606796 ACCAATACATTGTGGAATTATGAGCA 59.393 34.615 0.00 0.00 38.36 4.26
260 261 6.919662 CACCAATACATTGTGGAATTATGAGC 59.080 38.462 0.00 0.00 38.36 4.26
261 262 6.919662 GCACCAATACATTGTGGAATTATGAG 59.080 38.462 0.00 0.00 38.36 2.90
262 263 6.606796 AGCACCAATACATTGTGGAATTATGA 59.393 34.615 0.00 0.00 38.36 2.15
263 264 6.698329 CAGCACCAATACATTGTGGAATTATG 59.302 38.462 0.00 0.00 38.36 1.90
264 265 6.380846 ACAGCACCAATACATTGTGGAATTAT 59.619 34.615 0.00 0.00 38.36 1.28
265 266 5.714333 ACAGCACCAATACATTGTGGAATTA 59.286 36.000 0.00 0.00 38.36 1.40
266 267 4.527816 ACAGCACCAATACATTGTGGAATT 59.472 37.500 0.00 0.00 38.36 2.17
267 268 4.082081 CACAGCACCAATACATTGTGGAAT 60.082 41.667 0.00 0.00 38.36 3.01
268 269 3.255395 CACAGCACCAATACATTGTGGAA 59.745 43.478 0.00 0.00 38.36 3.53
269 270 2.819019 CACAGCACCAATACATTGTGGA 59.181 45.455 0.00 0.00 38.36 4.02
270 271 2.557924 ACACAGCACCAATACATTGTGG 59.442 45.455 0.00 0.00 40.01 4.17
271 272 3.252944 TCACACAGCACCAATACATTGTG 59.747 43.478 0.00 1.27 41.12 3.33
272 273 3.485394 TCACACAGCACCAATACATTGT 58.515 40.909 0.00 0.00 36.06 2.71
273 274 4.022935 AGTTCACACAGCACCAATACATTG 60.023 41.667 0.00 0.00 37.52 2.82
274 275 4.144297 AGTTCACACAGCACCAATACATT 58.856 39.130 0.00 0.00 0.00 2.71
275 276 3.754965 AGTTCACACAGCACCAATACAT 58.245 40.909 0.00 0.00 0.00 2.29
276 277 3.207265 AGTTCACACAGCACCAATACA 57.793 42.857 0.00 0.00 0.00 2.29
277 278 4.315803 AGTAGTTCACACAGCACCAATAC 58.684 43.478 0.00 0.00 0.00 1.89
278 279 4.617253 AGTAGTTCACACAGCACCAATA 57.383 40.909 0.00 0.00 0.00 1.90
279 280 3.492102 AGTAGTTCACACAGCACCAAT 57.508 42.857 0.00 0.00 0.00 3.16
280 281 3.202906 GAAGTAGTTCACACAGCACCAA 58.797 45.455 5.38 0.00 32.36 3.67
281 282 2.484770 GGAAGTAGTTCACACAGCACCA 60.485 50.000 12.31 0.00 33.93 4.17
282 283 2.143925 GGAAGTAGTTCACACAGCACC 58.856 52.381 12.31 0.00 33.93 5.01
283 284 2.544267 GTGGAAGTAGTTCACACAGCAC 59.456 50.000 19.06 11.06 35.54 4.40
284 285 2.484770 GGTGGAAGTAGTTCACACAGCA 60.485 50.000 22.55 7.18 36.41 4.41
285 286 2.143925 GGTGGAAGTAGTTCACACAGC 58.856 52.381 22.55 13.95 36.41 4.40
286 287 3.753294 AGGTGGAAGTAGTTCACACAG 57.247 47.619 22.55 0.00 36.41 3.66
287 288 5.617528 TTAAGGTGGAAGTAGTTCACACA 57.382 39.130 22.55 8.28 36.41 3.72
329 331 0.828022 TGACCTGTCCACGTCTTGTT 59.172 50.000 0.00 0.00 0.00 2.83
333 335 1.046472 TTGGTGACCTGTCCACGTCT 61.046 55.000 2.11 0.00 35.48 4.18
343 346 0.249911 GAGTGCGTTCTTGGTGACCT 60.250 55.000 2.11 0.00 0.00 3.85
383 386 1.413445 TGGATGCCATGCTATTTTGCC 59.587 47.619 0.00 0.00 0.00 4.52
385 388 8.525316 TCTTTATATGGATGCCATGCTATTTTG 58.475 33.333 9.14 0.00 44.84 2.44
386 389 8.654485 TCTTTATATGGATGCCATGCTATTTT 57.346 30.769 9.14 0.00 44.84 1.82
387 390 8.654485 TTCTTTATATGGATGCCATGCTATTT 57.346 30.769 9.14 0.00 44.84 1.40
392 395 5.105997 GGTCTTCTTTATATGGATGCCATGC 60.106 44.000 9.14 0.00 44.84 4.06
436 440 6.327279 ACTATTTTGGCTTTCACCTTGTAC 57.673 37.500 0.00 0.00 0.00 2.90
532 539 1.066573 AGACAGAACTGCTTCCATCCG 60.067 52.381 1.46 0.00 0.00 4.18
607 614 3.197790 CAAGCGTGCAGGATCCCG 61.198 66.667 11.29 5.90 0.00 5.14
660 673 3.551046 CGACAACTGTGTGAGCTCTTAGT 60.551 47.826 16.19 10.58 38.41 2.24
693 706 0.672401 AGTTTGTGATGTACCGCCCG 60.672 55.000 0.00 0.00 0.00 6.13
708 721 9.953565 TTAAGTTGTATAAGCATACCAGAGTTT 57.046 29.630 0.00 0.00 36.90 2.66
777 790 3.290948 ACTTGGTTGCACTTGAAGGTA 57.709 42.857 0.00 0.00 0.00 3.08
796 809 3.508012 TCCTCAGTGCTCTCTTTGACTAC 59.492 47.826 0.00 0.00 0.00 2.73
837 856 5.086104 ACGGAGTGCCAATATATGATACC 57.914 43.478 0.00 0.00 42.51 2.73
890 909 2.740981 CTGCTGTCAACTCTGTGATTCC 59.259 50.000 0.00 0.00 0.00 3.01
899 918 1.599542 GGTCACAACTGCTGTCAACTC 59.400 52.381 0.00 0.00 35.47 3.01
942 961 7.283127 TCAGTGATATTAGAAATGGCACTTTCC 59.717 37.037 14.57 4.27 36.06 3.13
947 966 7.559590 AACTCAGTGATATTAGAAATGGCAC 57.440 36.000 0.00 0.00 0.00 5.01
997 1016 1.271856 TAGGGTCTGCGAACCATTCA 58.728 50.000 13.82 0.00 42.91 2.57
1195 1214 7.584122 ACAGAACAGAAGAGAAGTAACTACA 57.416 36.000 0.00 0.00 0.00 2.74
1286 1305 5.985530 TCTACATCTGAAACAAGTGTGACAG 59.014 40.000 10.12 10.12 35.17 3.51
1339 1358 4.533815 TCTACTCTTATGGATGTCACCGT 58.466 43.478 0.00 0.00 0.00 4.83
1599 1618 1.101331 GCCAGAATTGAAGGCTCAGG 58.899 55.000 5.40 0.00 44.92 3.86
1645 1664 2.167693 TCGATAAGTTGGCCTTCGTCAT 59.832 45.455 3.32 0.00 34.46 3.06
1680 1699 2.427232 TTCTAACACGGACCGACAAG 57.573 50.000 23.38 11.93 0.00 3.16
1710 1729 6.738832 GGTAGAAAGTTGGTGAAATCTACC 57.261 41.667 12.48 12.48 46.98 3.18
1914 1934 1.532868 CTTTGAGCACAAGAAGGGACG 59.467 52.381 0.00 0.00 37.32 4.79
2104 2131 9.539825 TTACAAACATGCAGTCATTACAAAAAT 57.460 25.926 0.00 0.00 0.00 1.82
2137 2164 8.615705 AGTAAAGGAATCAGGTAATTTCTTCCT 58.384 33.333 0.00 0.00 43.21 3.36
2161 2188 6.943718 TCAAAATTATGTCCCTTACCGAAAGT 59.056 34.615 0.00 0.00 32.89 2.66
2377 2405 8.659925 ATGTTTCATTGCTTAACATCAAAACA 57.340 26.923 0.00 0.00 37.85 2.83
2378 2406 9.934190 AAATGTTTCATTGCTTAACATCAAAAC 57.066 25.926 0.00 0.00 40.54 2.43
2504 2533 9.190858 CAAATGCAGCTTACATGTTAAAAAGTA 57.809 29.630 2.30 0.00 0.00 2.24
2512 2541 4.947645 ACAACAAATGCAGCTTACATGTT 58.052 34.783 2.30 0.71 0.00 2.71
2513 2542 4.589216 ACAACAAATGCAGCTTACATGT 57.411 36.364 2.69 2.69 0.00 3.21
2514 2543 7.585286 AATTACAACAAATGCAGCTTACATG 57.415 32.000 0.00 0.00 0.00 3.21
2584 2615 7.887996 AAATGTTCACGCATTGAAAATATGT 57.112 28.000 1.94 0.00 46.09 2.29
2596 2628 6.531594 TGTAACATTTTGAAAATGTTCACGCA 59.468 30.769 37.45 29.23 44.83 5.24
2676 2711 8.338259 CACACTATGGCACTATCATTTTCTTAC 58.662 37.037 0.00 0.00 0.00 2.34
2693 2728 3.066978 CCAGTATGCTGCCACACTATGG 61.067 54.545 5.11 0.00 43.87 2.74
2694 2729 2.216046 CCAGTATGCTGCCACACTATG 58.784 52.381 5.11 0.00 41.26 2.23
2695 2730 1.839994 ACCAGTATGCTGCCACACTAT 59.160 47.619 5.11 0.00 41.26 2.12
2696 2731 1.275666 ACCAGTATGCTGCCACACTA 58.724 50.000 5.11 0.00 41.26 2.74
2697 2732 0.401738 AACCAGTATGCTGCCACACT 59.598 50.000 5.11 0.00 41.26 3.55
2698 2733 2.009774 CTAACCAGTATGCTGCCACAC 58.990 52.381 5.11 0.00 41.26 3.82
2699 2734 1.065491 CCTAACCAGTATGCTGCCACA 60.065 52.381 5.11 0.00 41.26 4.17
2700 2735 1.668419 CCTAACCAGTATGCTGCCAC 58.332 55.000 5.11 0.00 41.26 5.01
2701 2736 0.107214 GCCTAACCAGTATGCTGCCA 60.107 55.000 5.11 0.00 41.26 4.92
2702 2737 0.107214 TGCCTAACCAGTATGCTGCC 60.107 55.000 5.11 0.00 41.26 4.85
2703 2738 1.303309 CTGCCTAACCAGTATGCTGC 58.697 55.000 5.11 0.00 41.26 5.25
2704 2739 2.093500 TCACTGCCTAACCAGTATGCTG 60.093 50.000 3.45 3.45 43.85 4.41
2705 2740 2.093447 GTCACTGCCTAACCAGTATGCT 60.093 50.000 0.00 0.00 43.85 3.79
2706 2741 2.280628 GTCACTGCCTAACCAGTATGC 58.719 52.381 0.00 0.00 43.85 3.14
2707 2742 3.610040 TGTCACTGCCTAACCAGTATG 57.390 47.619 0.00 0.00 43.85 2.39
2708 2743 3.774766 TCATGTCACTGCCTAACCAGTAT 59.225 43.478 0.00 0.00 43.85 2.12
2709 2744 3.169908 TCATGTCACTGCCTAACCAGTA 58.830 45.455 0.00 0.00 43.85 2.74
2710 2745 1.977854 TCATGTCACTGCCTAACCAGT 59.022 47.619 0.00 0.00 46.47 4.00
2711 2746 2.744202 GTTCATGTCACTGCCTAACCAG 59.256 50.000 0.00 0.00 38.78 4.00
2712 2747 2.105649 TGTTCATGTCACTGCCTAACCA 59.894 45.455 0.00 0.00 0.00 3.67
2713 2748 2.778299 TGTTCATGTCACTGCCTAACC 58.222 47.619 0.00 0.00 0.00 2.85
2714 2749 5.376854 AAATGTTCATGTCACTGCCTAAC 57.623 39.130 0.00 0.00 0.00 2.34
2715 2750 8.978874 ATATAAATGTTCATGTCACTGCCTAA 57.021 30.769 0.00 0.00 0.00 2.69
2716 2751 7.384932 CGATATAAATGTTCATGTCACTGCCTA 59.615 37.037 0.00 0.00 0.00 3.93
2717 2752 6.203530 CGATATAAATGTTCATGTCACTGCCT 59.796 38.462 0.00 0.00 0.00 4.75
2718 2753 6.202762 TCGATATAAATGTTCATGTCACTGCC 59.797 38.462 0.00 0.00 0.00 4.85
2719 2754 7.177498 TCGATATAAATGTTCATGTCACTGC 57.823 36.000 0.00 0.00 0.00 4.40
2722 2757 8.895845 GCATTTCGATATAAATGTTCATGTCAC 58.104 33.333 11.01 0.00 44.90 3.67
2723 2758 8.075574 GGCATTTCGATATAAATGTTCATGTCA 58.924 33.333 11.01 0.00 44.90 3.58
2724 2759 8.075574 TGGCATTTCGATATAAATGTTCATGTC 58.924 33.333 11.01 0.00 44.90 3.06
2725 2760 7.862372 GTGGCATTTCGATATAAATGTTCATGT 59.138 33.333 11.01 0.00 44.90 3.21
2726 2761 7.861872 TGTGGCATTTCGATATAAATGTTCATG 59.138 33.333 11.01 0.00 44.90 3.07
2727 2762 7.939782 TGTGGCATTTCGATATAAATGTTCAT 58.060 30.769 11.01 0.00 44.90 2.57
2728 2763 7.326968 TGTGGCATTTCGATATAAATGTTCA 57.673 32.000 11.01 8.10 44.90 3.18
2729 2764 8.292448 AGATGTGGCATTTCGATATAAATGTTC 58.708 33.333 11.01 6.31 44.90 3.18
2730 2765 8.169977 AGATGTGGCATTTCGATATAAATGTT 57.830 30.769 11.01 0.00 44.90 2.71
2731 2766 7.750229 AGATGTGGCATTTCGATATAAATGT 57.250 32.000 11.01 0.00 44.90 2.71
2734 2769 9.337396 AGTTAAGATGTGGCATTTCGATATAAA 57.663 29.630 0.00 0.00 0.00 1.40
2735 2770 8.902540 AGTTAAGATGTGGCATTTCGATATAA 57.097 30.769 0.00 0.00 0.00 0.98
2736 2771 9.990360 TTAGTTAAGATGTGGCATTTCGATATA 57.010 29.630 0.00 0.00 0.00 0.86
2737 2772 8.902540 TTAGTTAAGATGTGGCATTTCGATAT 57.097 30.769 0.00 0.00 0.00 1.63
2738 2773 8.725405 TTTAGTTAAGATGTGGCATTTCGATA 57.275 30.769 0.00 0.00 0.00 2.92
2739 2774 7.624360 TTTAGTTAAGATGTGGCATTTCGAT 57.376 32.000 0.00 0.00 0.00 3.59
2740 2775 7.624360 ATTTAGTTAAGATGTGGCATTTCGA 57.376 32.000 0.00 0.00 0.00 3.71
2741 2776 9.950680 ATAATTTAGTTAAGATGTGGCATTTCG 57.049 29.630 0.00 0.00 0.00 3.46
2818 2853 5.664294 TGCTGATGTCAGGCAATATTTTT 57.336 34.783 11.66 0.00 43.94 1.94
2819 2854 5.452776 CCATGCTGATGTCAGGCAATATTTT 60.453 40.000 11.66 0.00 43.94 1.82
2820 2855 4.038763 CCATGCTGATGTCAGGCAATATTT 59.961 41.667 11.66 0.00 43.94 1.40
2821 2856 3.572682 CCATGCTGATGTCAGGCAATATT 59.427 43.478 11.66 0.00 43.94 1.28
2822 2857 3.154710 CCATGCTGATGTCAGGCAATAT 58.845 45.455 11.66 0.00 43.94 1.28
2823 2858 2.092267 ACCATGCTGATGTCAGGCAATA 60.092 45.455 11.66 0.00 43.94 1.90
2824 2859 1.341679 ACCATGCTGATGTCAGGCAAT 60.342 47.619 11.66 0.00 43.94 3.56
2825 2860 0.038599 ACCATGCTGATGTCAGGCAA 59.961 50.000 11.66 0.00 43.94 4.52
2826 2861 0.678684 CACCATGCTGATGTCAGGCA 60.679 55.000 11.66 10.01 43.94 4.75
2827 2862 0.393402 TCACCATGCTGATGTCAGGC 60.393 55.000 11.66 5.14 43.94 4.85
2828 2863 2.343484 ATCACCATGCTGATGTCAGG 57.657 50.000 11.66 0.00 43.94 3.86
2829 2864 3.558829 GTGTATCACCATGCTGATGTCAG 59.441 47.826 12.87 5.66 46.40 3.51
2830 2865 3.055240 TGTGTATCACCATGCTGATGTCA 60.055 43.478 12.87 9.31 32.86 3.58
2831 2866 3.534554 TGTGTATCACCATGCTGATGTC 58.465 45.455 12.87 7.22 32.86 3.06
2832 2867 3.632643 TGTGTATCACCATGCTGATGT 57.367 42.857 12.87 0.00 32.86 3.06
2833 2868 3.252458 CCATGTGTATCACCATGCTGATG 59.748 47.826 12.87 0.00 32.86 3.07
2834 2869 3.117776 ACCATGTGTATCACCATGCTGAT 60.118 43.478 8.53 8.53 35.05 2.90
2835 2870 2.239402 ACCATGTGTATCACCATGCTGA 59.761 45.455 0.00 0.00 32.73 4.26
2836 2871 2.646930 ACCATGTGTATCACCATGCTG 58.353 47.619 0.00 0.00 32.73 4.41
2837 2872 3.370840 AACCATGTGTATCACCATGCT 57.629 42.857 0.00 0.00 32.73 3.79
2838 2873 5.507817 CCATTAACCATGTGTATCACCATGC 60.508 44.000 0.00 0.00 32.73 4.06
2839 2874 5.009911 CCCATTAACCATGTGTATCACCATG 59.990 44.000 0.00 0.00 32.73 3.66
2840 2875 5.103728 TCCCATTAACCATGTGTATCACCAT 60.104 40.000 0.00 0.00 32.73 3.55
2841 2876 4.228438 TCCCATTAACCATGTGTATCACCA 59.772 41.667 0.00 0.00 32.73 4.17
2842 2877 4.578928 GTCCCATTAACCATGTGTATCACC 59.421 45.833 0.00 0.00 32.73 4.02
2843 2878 4.272504 CGTCCCATTAACCATGTGTATCAC 59.727 45.833 0.00 0.00 34.56 3.06
2844 2879 4.162509 TCGTCCCATTAACCATGTGTATCA 59.837 41.667 0.00 0.00 0.00 2.15
2845 2880 4.510340 GTCGTCCCATTAACCATGTGTATC 59.490 45.833 0.00 0.00 0.00 2.24
2846 2881 4.163458 AGTCGTCCCATTAACCATGTGTAT 59.837 41.667 0.00 0.00 0.00 2.29
2847 2882 3.516300 AGTCGTCCCATTAACCATGTGTA 59.484 43.478 0.00 0.00 0.00 2.90
2848 2883 2.304761 AGTCGTCCCATTAACCATGTGT 59.695 45.455 0.00 0.00 0.00 3.72
2849 2884 2.936498 GAGTCGTCCCATTAACCATGTG 59.064 50.000 0.00 0.00 0.00 3.21
2850 2885 2.569853 TGAGTCGTCCCATTAACCATGT 59.430 45.455 0.00 0.00 0.00 3.21
2851 2886 2.936498 GTGAGTCGTCCCATTAACCATG 59.064 50.000 0.00 0.00 0.00 3.66
2852 2887 2.569853 TGTGAGTCGTCCCATTAACCAT 59.430 45.455 0.00 0.00 0.00 3.55
2853 2888 1.972075 TGTGAGTCGTCCCATTAACCA 59.028 47.619 0.00 0.00 0.00 3.67
2854 2889 2.740447 GTTGTGAGTCGTCCCATTAACC 59.260 50.000 0.00 0.00 0.00 2.85
2855 2890 2.740447 GGTTGTGAGTCGTCCCATTAAC 59.260 50.000 0.00 0.00 0.00 2.01
2856 2891 2.369203 TGGTTGTGAGTCGTCCCATTAA 59.631 45.455 0.00 0.00 0.00 1.40
2857 2892 1.972075 TGGTTGTGAGTCGTCCCATTA 59.028 47.619 0.00 0.00 0.00 1.90
2858 2893 0.762418 TGGTTGTGAGTCGTCCCATT 59.238 50.000 0.00 0.00 0.00 3.16
2859 2894 0.321671 CTGGTTGTGAGTCGTCCCAT 59.678 55.000 0.00 0.00 0.00 4.00
2860 2895 1.745890 CTGGTTGTGAGTCGTCCCA 59.254 57.895 0.00 0.00 0.00 4.37
2861 2896 1.668151 GCTGGTTGTGAGTCGTCCC 60.668 63.158 0.00 0.00 0.00 4.46
2862 2897 0.667792 GAGCTGGTTGTGAGTCGTCC 60.668 60.000 0.00 0.00 0.00 4.79
2863 2898 0.032130 TGAGCTGGTTGTGAGTCGTC 59.968 55.000 0.00 0.00 0.00 4.20
2864 2899 0.249489 GTGAGCTGGTTGTGAGTCGT 60.249 55.000 0.00 0.00 0.00 4.34
2865 2900 0.032678 AGTGAGCTGGTTGTGAGTCG 59.967 55.000 0.00 0.00 0.00 4.18
2866 2901 1.202580 ACAGTGAGCTGGTTGTGAGTC 60.203 52.381 0.00 0.00 46.62 3.36
2867 2902 0.833287 ACAGTGAGCTGGTTGTGAGT 59.167 50.000 0.00 0.00 46.62 3.41
2868 2903 2.820059 TACAGTGAGCTGGTTGTGAG 57.180 50.000 0.00 0.00 46.62 3.51
2869 2904 2.806745 GCTTACAGTGAGCTGGTTGTGA 60.807 50.000 10.08 0.00 46.62 3.58
2870 2905 1.532868 GCTTACAGTGAGCTGGTTGTG 59.467 52.381 10.08 0.00 46.62 3.33
2871 2906 1.873903 CGCTTACAGTGAGCTGGTTGT 60.874 52.381 14.93 0.00 46.62 3.32
2872 2907 0.792640 CGCTTACAGTGAGCTGGTTG 59.207 55.000 14.93 0.00 46.62 3.77
2873 2908 0.679505 TCGCTTACAGTGAGCTGGTT 59.320 50.000 14.93 0.00 46.62 3.67
2874 2909 0.038159 GTCGCTTACAGTGAGCTGGT 60.038 55.000 14.93 0.00 46.62 4.00
2875 2910 1.073216 CGTCGCTTACAGTGAGCTGG 61.073 60.000 14.93 1.22 46.62 4.85
2877 2912 1.444553 GCGTCGCTTACAGTGAGCT 60.445 57.895 14.93 0.00 35.09 4.09
2878 2913 2.778997 CGCGTCGCTTACAGTGAGC 61.779 63.158 16.36 7.27 35.09 4.26
2879 2914 0.523546 ATCGCGTCGCTTACAGTGAG 60.524 55.000 16.36 0.00 35.09 3.51
2880 2915 0.522705 GATCGCGTCGCTTACAGTGA 60.523 55.000 16.36 3.31 31.34 3.41
2881 2916 0.523546 AGATCGCGTCGCTTACAGTG 60.524 55.000 16.36 0.00 0.00 3.66
2882 2917 0.170561 AAGATCGCGTCGCTTACAGT 59.829 50.000 16.36 0.00 0.00 3.55
2883 2918 0.567968 CAAGATCGCGTCGCTTACAG 59.432 55.000 16.36 0.00 0.00 2.74
2884 2919 0.800683 CCAAGATCGCGTCGCTTACA 60.801 55.000 16.36 0.00 0.00 2.41
2885 2920 0.524816 TCCAAGATCGCGTCGCTTAC 60.525 55.000 16.36 6.01 0.00 2.34
2886 2921 0.384309 ATCCAAGATCGCGTCGCTTA 59.616 50.000 16.36 3.43 0.00 3.09
2887 2922 0.872021 GATCCAAGATCGCGTCGCTT 60.872 55.000 16.36 5.50 0.00 4.68
2888 2923 1.299468 GATCCAAGATCGCGTCGCT 60.299 57.895 16.36 0.00 0.00 4.93
2889 2924 2.639926 CGATCCAAGATCGCGTCGC 61.640 63.158 13.41 7.29 34.66 5.19
2890 2925 1.298413 ACGATCCAAGATCGCGTCG 60.298 57.895 22.99 8.07 44.60 5.12
2891 2926 1.812214 GCACGATCCAAGATCGCGTC 61.812 60.000 22.99 11.04 44.60 5.19
2892 2927 1.878522 GCACGATCCAAGATCGCGT 60.879 57.895 22.99 6.25 44.60 6.01
2893 2928 1.815212 CTGCACGATCCAAGATCGCG 61.815 60.000 22.99 16.51 44.60 5.87
2894 2929 1.930100 CTGCACGATCCAAGATCGC 59.070 57.895 22.99 11.07 44.60 4.58
2895 2930 0.807275 TGCTGCACGATCCAAGATCG 60.807 55.000 21.82 21.82 46.02 3.69
2896 2931 1.329906 CTTGCTGCACGATCCAAGATC 59.670 52.381 0.00 0.00 37.46 2.75
2897 2932 1.376543 CTTGCTGCACGATCCAAGAT 58.623 50.000 0.00 0.00 37.46 2.40
2898 2933 1.300971 GCTTGCTGCACGATCCAAGA 61.301 55.000 10.59 0.00 42.31 3.02
2899 2934 1.136147 GCTTGCTGCACGATCCAAG 59.864 57.895 10.59 0.44 42.31 3.61
2900 2935 2.679934 CGCTTGCTGCACGATCCAA 61.680 57.895 10.59 0.00 43.06 3.53
2901 2936 3.120385 CGCTTGCTGCACGATCCA 61.120 61.111 10.59 0.00 43.06 3.41
2902 2937 2.806856 CTCGCTTGCTGCACGATCC 61.807 63.158 14.43 0.00 43.06 3.36
2903 2938 1.807165 TCTCGCTTGCTGCACGATC 60.807 57.895 14.43 0.00 43.06 3.69
2904 2939 2.097038 GTCTCGCTTGCTGCACGAT 61.097 57.895 14.43 0.00 43.06 3.73
2905 2940 2.734723 GTCTCGCTTGCTGCACGA 60.735 61.111 10.59 12.28 43.06 4.35
2906 2941 1.078201 TATGTCTCGCTTGCTGCACG 61.078 55.000 0.00 3.73 43.06 5.34
2907 2942 0.649475 CTATGTCTCGCTTGCTGCAC 59.351 55.000 0.00 0.00 43.06 4.57
2908 2943 0.532115 TCTATGTCTCGCTTGCTGCA 59.468 50.000 0.00 0.00 43.06 4.41
2909 2944 0.926846 GTCTATGTCTCGCTTGCTGC 59.073 55.000 0.00 0.00 38.57 5.25
2910 2945 2.458951 GAGTCTATGTCTCGCTTGCTG 58.541 52.381 0.00 0.00 0.00 4.41
2911 2946 1.064803 CGAGTCTATGTCTCGCTTGCT 59.935 52.381 2.59 0.00 45.77 3.91
2912 2947 1.471964 CGAGTCTATGTCTCGCTTGC 58.528 55.000 2.59 0.00 45.77 4.01
2918 2953 0.755698 TGGGGGCGAGTCTATGTCTC 60.756 60.000 0.00 0.00 0.00 3.36
2919 2954 0.325296 TTGGGGGCGAGTCTATGTCT 60.325 55.000 0.00 0.00 0.00 3.41
2920 2955 0.759346 ATTGGGGGCGAGTCTATGTC 59.241 55.000 0.00 0.00 0.00 3.06
2921 2956 0.759346 GATTGGGGGCGAGTCTATGT 59.241 55.000 0.00 0.00 0.00 2.29
2922 2957 0.758734 TGATTGGGGGCGAGTCTATG 59.241 55.000 0.00 0.00 0.00 2.23
2923 2958 1.051812 CTGATTGGGGGCGAGTCTAT 58.948 55.000 0.00 0.00 0.00 1.98
2924 2959 0.325296 ACTGATTGGGGGCGAGTCTA 60.325 55.000 0.00 0.00 0.00 2.59
2925 2960 1.613630 ACTGATTGGGGGCGAGTCT 60.614 57.895 0.00 0.00 0.00 3.24
2926 2961 1.450312 CACTGATTGGGGGCGAGTC 60.450 63.158 0.00 0.00 0.00 3.36
2927 2962 2.671070 CACTGATTGGGGGCGAGT 59.329 61.111 0.00 0.00 0.00 4.18
2928 2963 1.971505 TAGCACTGATTGGGGGCGAG 61.972 60.000 0.00 0.00 0.00 5.03
2929 2964 1.344953 ATAGCACTGATTGGGGGCGA 61.345 55.000 0.00 0.00 0.00 5.54
2930 2965 1.149174 ATAGCACTGATTGGGGGCG 59.851 57.895 0.00 0.00 0.00 6.13
2931 2966 1.458639 GCATAGCACTGATTGGGGGC 61.459 60.000 0.00 0.00 0.00 5.80
2932 2967 0.825010 GGCATAGCACTGATTGGGGG 60.825 60.000 0.00 0.00 0.00 5.40
2933 2968 1.168407 CGGCATAGCACTGATTGGGG 61.168 60.000 0.00 0.00 0.00 4.96
2934 2969 0.179048 TCGGCATAGCACTGATTGGG 60.179 55.000 0.00 0.00 0.00 4.12
2935 2970 1.534163 CATCGGCATAGCACTGATTGG 59.466 52.381 0.00 0.00 0.00 3.16
2936 2971 1.069432 GCATCGGCATAGCACTGATTG 60.069 52.381 0.00 0.00 40.72 2.67
2937 2972 1.202734 AGCATCGGCATAGCACTGATT 60.203 47.619 0.00 0.00 44.61 2.57
2938 2973 0.395686 AGCATCGGCATAGCACTGAT 59.604 50.000 0.00 0.00 44.61 2.90
2939 2974 0.531311 CAGCATCGGCATAGCACTGA 60.531 55.000 0.00 0.00 44.61 3.41
2940 2975 0.812811 ACAGCATCGGCATAGCACTG 60.813 55.000 0.00 0.00 44.61 3.66
2941 2976 0.531532 GACAGCATCGGCATAGCACT 60.532 55.000 0.00 0.00 44.61 4.40
2942 2977 0.531532 AGACAGCATCGGCATAGCAC 60.532 55.000 0.00 0.00 44.61 4.40
2943 2978 0.178767 AAGACAGCATCGGCATAGCA 59.821 50.000 0.00 0.00 44.61 3.49
2944 2979 1.303309 AAAGACAGCATCGGCATAGC 58.697 50.000 0.00 0.00 44.61 2.97
2945 2980 2.938451 TGAAAAGACAGCATCGGCATAG 59.062 45.455 0.00 0.00 44.61 2.23
2946 2981 2.677836 GTGAAAAGACAGCATCGGCATA 59.322 45.455 0.00 0.00 44.61 3.14
2947 2982 1.470098 GTGAAAAGACAGCATCGGCAT 59.530 47.619 0.00 0.00 44.61 4.40
2948 2983 0.874390 GTGAAAAGACAGCATCGGCA 59.126 50.000 0.00 0.00 44.61 5.69
2949 2984 0.169009 GGTGAAAAGACAGCATCGGC 59.831 55.000 0.00 0.00 38.05 5.54
2950 2985 1.813513 AGGTGAAAAGACAGCATCGG 58.186 50.000 0.00 0.00 40.20 4.18
2951 2986 2.807967 TGAAGGTGAAAAGACAGCATCG 59.192 45.455 0.00 0.00 38.33 3.84
2952 2987 4.067896 TCTGAAGGTGAAAAGACAGCATC 58.932 43.478 0.00 0.00 40.20 3.91
2953 2988 4.070716 CTCTGAAGGTGAAAAGACAGCAT 58.929 43.478 0.00 0.00 40.20 3.79
2954 2989 3.470709 CTCTGAAGGTGAAAAGACAGCA 58.529 45.455 0.00 0.00 40.20 4.41
2955 2990 2.810852 CCTCTGAAGGTGAAAAGACAGC 59.189 50.000 0.00 0.00 37.94 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.