Multiple sequence alignment - TraesCS3B01G024800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G024800 chr3B 100.000 3240 0 0 1 3240 10666247 10663008 0.000000e+00 5984.0
1 TraesCS3B01G024800 chr3B 91.384 708 60 1 3 709 253491649 253492356 0.000000e+00 968.0
2 TraesCS3B01G024800 chr3B 90.152 132 11 2 3111 3240 598912901 598912770 1.550000e-38 171.0
3 TraesCS3B01G024800 chr3D 86.550 2461 211 78 710 3099 8831306 8828895 0.000000e+00 2601.0
4 TraesCS3B01G024800 chr3D 84.536 97 7 4 2982 3075 8835760 8835669 4.450000e-14 89.8
5 TraesCS3B01G024800 chr6A 93.380 710 45 1 1 708 616796712 616797421 0.000000e+00 1050.0
6 TraesCS3B01G024800 chr5B 93.040 704 47 2 3 706 682376728 682377429 0.000000e+00 1027.0
7 TraesCS3B01G024800 chr2B 92.535 710 51 1 3 710 13039111 13039820 0.000000e+00 1016.0
8 TraesCS3B01G024800 chr2B 96.183 131 4 1 3111 3240 781812127 781811997 2.530000e-51 213.0
9 TraesCS3B01G024800 chr7B 92.535 710 48 3 1 708 637199894 637200600 0.000000e+00 1013.0
10 TraesCS3B01G024800 chr4B 93.601 672 42 1 1 672 382781856 382782526 0.000000e+00 1002.0
11 TraesCS3B01G024800 chr4B 92.124 711 52 2 1 708 119374467 119375176 0.000000e+00 1000.0
12 TraesCS3B01G024800 chr7A 92.113 710 54 2 1 708 566983247 566983956 0.000000e+00 1000.0
13 TraesCS3B01G024800 chr1B 91.261 698 61 0 3 700 621264141 621263444 0.000000e+00 952.0
14 TraesCS3B01G024800 chr3A 89.077 769 48 7 724 1479 12253046 12253791 0.000000e+00 922.0
15 TraesCS3B01G024800 chr3A 90.049 613 46 10 1489 2098 12253841 12254441 0.000000e+00 780.0
16 TraesCS3B01G024800 chr3A 81.346 981 103 34 2132 3075 12254443 12255380 0.000000e+00 725.0
17 TraesCS3B01G024800 chr3A 88.550 131 13 1 3112 3240 432271625 432271755 1.200000e-34 158.0
18 TraesCS3B01G024800 chr2A 95.455 132 3 2 3111 3240 617649011 617649141 1.180000e-49 207.0
19 TraesCS3B01G024800 chr2A 86.667 120 16 0 3121 3240 753593290 753593409 2.030000e-27 134.0
20 TraesCS3B01G024800 chr6B 78.571 308 35 16 873 1153 240384369 240384672 1.190000e-39 174.0
21 TraesCS3B01G024800 chr5A 86.667 120 16 0 3121 3240 570251955 570252074 2.030000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G024800 chr3B 10663008 10666247 3239 True 5984 5984 100.000 1 3240 1 chr3B.!!$R1 3239
1 TraesCS3B01G024800 chr3B 253491649 253492356 707 False 968 968 91.384 3 709 1 chr3B.!!$F1 706
2 TraesCS3B01G024800 chr3D 8828895 8831306 2411 True 2601 2601 86.550 710 3099 1 chr3D.!!$R1 2389
3 TraesCS3B01G024800 chr6A 616796712 616797421 709 False 1050 1050 93.380 1 708 1 chr6A.!!$F1 707
4 TraesCS3B01G024800 chr5B 682376728 682377429 701 False 1027 1027 93.040 3 706 1 chr5B.!!$F1 703
5 TraesCS3B01G024800 chr2B 13039111 13039820 709 False 1016 1016 92.535 3 710 1 chr2B.!!$F1 707
6 TraesCS3B01G024800 chr7B 637199894 637200600 706 False 1013 1013 92.535 1 708 1 chr7B.!!$F1 707
7 TraesCS3B01G024800 chr4B 382781856 382782526 670 False 1002 1002 93.601 1 672 1 chr4B.!!$F2 671
8 TraesCS3B01G024800 chr4B 119374467 119375176 709 False 1000 1000 92.124 1 708 1 chr4B.!!$F1 707
9 TraesCS3B01G024800 chr7A 566983247 566983956 709 False 1000 1000 92.113 1 708 1 chr7A.!!$F1 707
10 TraesCS3B01G024800 chr1B 621263444 621264141 697 True 952 952 91.261 3 700 1 chr1B.!!$R1 697
11 TraesCS3B01G024800 chr3A 12253046 12255380 2334 False 809 922 86.824 724 3075 3 chr3A.!!$F2 2351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 561 0.038159 GTGTGCTAGCTTGACGAGGT 60.038 55.0 17.23 0.0 39.87 3.85 F
820 823 0.604243 TTTGGCGTCCTAACATGCGT 60.604 50.0 0.00 0.0 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1666 0.611062 TGAGTCGGTACCTCCCACTG 60.611 60.000 10.9 0.00 0.00 3.66 R
2513 2610 5.495926 ACAATGTTCAAATATTTGGGCCA 57.504 34.783 24.4 18.44 38.66 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.429930 CGGAGGGCCTGTTGTTGA 59.570 61.111 12.95 0.00 0.00 3.18
70 71 4.381932 GGGCATCGATTTTGGAGTTCAATT 60.382 41.667 0.00 0.00 34.98 2.32
183 184 1.375908 TCGGAGACATTGCAGTGGC 60.376 57.895 14.25 10.97 41.68 5.01
251 252 1.367840 GTGGTGAAGTCGGAGCTGT 59.632 57.895 0.00 0.00 0.00 4.40
289 290 0.441533 GCAACGATGACAGTCAGCAG 59.558 55.000 18.69 13.06 31.10 4.24
425 426 6.484288 TGGATCTTCATGTTTTCCTACACAT 58.516 36.000 0.00 0.00 33.72 3.21
459 460 0.595825 GTTGGTTCGACGTTCGTCCT 60.596 55.000 17.60 0.00 41.35 3.85
461 462 1.283793 GGTTCGACGTTCGTCCTCA 59.716 57.895 17.60 1.82 41.35 3.86
476 477 3.417101 GTCCTCAGAGAAGTCAGAGTCA 58.583 50.000 0.00 0.00 35.12 3.41
516 518 2.433491 CGATGACGCCCGTTTGGA 60.433 61.111 0.00 0.00 37.49 3.53
538 540 0.924090 GAAGTGATGACGATGACGCC 59.076 55.000 0.00 0.00 43.96 5.68
559 561 0.038159 GTGTGCTAGCTTGACGAGGT 60.038 55.000 17.23 0.00 39.87 3.85
594 596 2.112190 TGTGCGTGGGATATCTTGGTA 58.888 47.619 2.05 0.00 0.00 3.25
597 599 2.703536 TGCGTGGGATATCTTGGTATGT 59.296 45.455 2.05 0.00 0.00 2.29
652 654 2.865079 TCCGTTGATTAACTGGGCAAA 58.135 42.857 9.97 0.00 34.60 3.68
654 656 3.829601 TCCGTTGATTAACTGGGCAAATT 59.170 39.130 9.97 0.00 34.60 1.82
695 697 8.856490 ATAAATAATGCAAAGCTTTTACCTCG 57.144 30.769 9.53 0.00 0.00 4.63
700 702 3.884091 TGCAAAGCTTTTACCTCGGTTTA 59.116 39.130 9.53 0.00 0.00 2.01
722 724 1.156736 AAAAACAGATCTGACGGCCG 58.843 50.000 29.27 26.86 0.00 6.13
723 725 0.673644 AAAACAGATCTGACGGCCGG 60.674 55.000 31.76 12.37 0.00 6.13
725 727 1.949847 AACAGATCTGACGGCCGGAG 61.950 60.000 31.76 24.02 32.83 4.63
759 762 2.509569 TGCAGAAAAATCAACCGGCTA 58.490 42.857 0.00 0.00 0.00 3.93
781 784 6.321435 GCTAAGCCATAGTGTTTCCCTTATTT 59.679 38.462 0.00 0.00 33.87 1.40
813 816 3.949113 AGAAAGTTGTTTTGGCGTCCTAA 59.051 39.130 0.00 0.00 0.00 2.69
820 823 0.604243 TTTGGCGTCCTAACATGCGT 60.604 50.000 0.00 0.00 0.00 5.24
864 867 2.037772 AGGTTTGTCGTTGATCAGCTCT 59.962 45.455 8.01 0.00 0.00 4.09
880 909 0.788391 CTCTTGAACACCGTAACCGC 59.212 55.000 0.00 0.00 0.00 5.68
912 941 1.453015 AGCCACACAAACCGAGCAA 60.453 52.632 0.00 0.00 0.00 3.91
934 963 2.741985 CGCAACCATCGCACCTCA 60.742 61.111 0.00 0.00 0.00 3.86
1003 1032 2.422231 CCTCTCCTCCTGCTCACCG 61.422 68.421 0.00 0.00 0.00 4.94
1063 1094 2.158841 CCGTGCATAGTACAACCAACAC 59.841 50.000 0.00 0.00 0.00 3.32
1201 1232 4.389576 CAAGACGTGCAAGCCGGC 62.390 66.667 21.89 21.89 0.00 6.13
1235 1266 2.579738 GAGAACACGGAGGAGGGC 59.420 66.667 0.00 0.00 0.00 5.19
1295 1326 1.007734 CCACGGTATGATCGACGGG 60.008 63.158 0.00 2.72 0.00 5.28
1403 1434 2.498167 AGTGCATGGTTGTGTCTTCTC 58.502 47.619 0.00 0.00 0.00 2.87
1430 1461 3.058085 TCGCGTTGATAGTGTAGTTGTGA 60.058 43.478 5.77 0.00 0.00 3.58
1436 1467 6.307155 GTTGATAGTGTAGTTGTGATGTTGC 58.693 40.000 0.00 0.00 0.00 4.17
1447 1478 3.295093 TGTGATGTTGCCCAGAAGAAAA 58.705 40.909 0.00 0.00 0.00 2.29
1448 1479 3.896888 TGTGATGTTGCCCAGAAGAAAAT 59.103 39.130 0.00 0.00 0.00 1.82
1460 1491 6.405176 GCCCAGAAGAAAATATGAGACAAAGG 60.405 42.308 0.00 0.00 0.00 3.11
1461 1492 6.886459 CCCAGAAGAAAATATGAGACAAAGGA 59.114 38.462 0.00 0.00 0.00 3.36
1462 1493 7.394359 CCCAGAAGAAAATATGAGACAAAGGAA 59.606 37.037 0.00 0.00 0.00 3.36
1463 1494 8.457261 CCAGAAGAAAATATGAGACAAAGGAAG 58.543 37.037 0.00 0.00 0.00 3.46
1464 1495 9.224267 CAGAAGAAAATATGAGACAAAGGAAGA 57.776 33.333 0.00 0.00 0.00 2.87
1465 1496 9.447157 AGAAGAAAATATGAGACAAAGGAAGAG 57.553 33.333 0.00 0.00 0.00 2.85
1466 1497 7.622893 AGAAAATATGAGACAAAGGAAGAGC 57.377 36.000 0.00 0.00 0.00 4.09
1467 1498 6.601217 AGAAAATATGAGACAAAGGAAGAGCC 59.399 38.462 0.00 0.00 0.00 4.70
1513 1592 3.484649 CCTGTTAATATCGTGGACGTTCG 59.515 47.826 0.00 0.00 40.80 3.95
1524 1603 1.145803 GGACGTTCGGGAAGAAGTTG 58.854 55.000 0.00 0.00 39.95 3.16
1538 1617 7.701501 CGGGAAGAAGTTGTAGATTCTAGTAAC 59.298 40.741 10.59 10.59 34.71 2.50
1543 1622 8.623030 AGAAGTTGTAGATTCTAGTAACCGATC 58.377 37.037 13.28 10.76 34.04 3.69
1566 1645 3.263425 TGGCCTAGTTTTGGTCTTCCTAG 59.737 47.826 3.32 0.00 34.23 3.02
1587 1666 1.202746 TGTTGGCCTTGGGATTTTTGC 60.203 47.619 3.32 0.00 0.00 3.68
1636 1715 3.057245 GCCTTGGTCCTTCATTTCTTCAC 60.057 47.826 0.00 0.00 0.00 3.18
1841 1922 9.261180 TCTACTTCTAATTTCAACACAAGTCTG 57.739 33.333 0.00 0.00 0.00 3.51
1980 2061 8.445275 TTCATACACACTACACAATTTCTGTT 57.555 30.769 0.00 0.00 35.47 3.16
1985 2066 8.046294 ACACACTACACAATTTCTGTTAACAA 57.954 30.769 10.03 0.00 35.47 2.83
2479 2576 6.921307 AGAAATAAATGAACAACGGGACAAAC 59.079 34.615 0.00 0.00 0.00 2.93
2480 2577 5.776173 ATAAATGAACAACGGGACAAACA 57.224 34.783 0.00 0.00 0.00 2.83
2513 2610 6.847421 ACAATACGAGAAACTACCTAGGTT 57.153 37.500 22.11 0.40 35.57 3.50
2601 2700 7.273164 TGTCGAAATGCATATGAAAAATGTGTC 59.727 33.333 6.97 0.00 0.00 3.67
2609 2708 8.763356 TGCATATGAAAAATGTGTCTGAAAAAC 58.237 29.630 6.97 0.00 0.00 2.43
2618 2717 5.651387 TGTGTCTGAAAAACATGGTTGAA 57.349 34.783 0.00 0.00 0.00 2.69
2625 2724 7.384660 GTCTGAAAAACATGGTTGAAATGCATA 59.615 33.333 0.00 0.00 0.00 3.14
2626 2725 8.095792 TCTGAAAAACATGGTTGAAATGCATAT 58.904 29.630 0.00 0.00 0.00 1.78
2627 2726 8.030744 TGAAAAACATGGTTGAAATGCATATG 57.969 30.769 0.00 0.16 0.00 1.78
2628 2727 7.660617 TGAAAAACATGGTTGAAATGCATATGT 59.339 29.630 0.00 0.88 31.47 2.29
2629 2728 9.149225 GAAAAACATGGTTGAAATGCATATGTA 57.851 29.630 0.00 0.00 30.61 2.29
2630 2729 9.499479 AAAAACATGGTTGAAATGCATATGTAA 57.501 25.926 0.00 0.00 30.61 2.41
2631 2730 9.499479 AAAACATGGTTGAAATGCATATGTAAA 57.501 25.926 0.00 0.00 30.61 2.01
2684 2784 8.524870 AGACATCAAAGCATATGTTTGAAAAC 57.475 30.769 24.33 19.46 44.81 2.43
2744 2849 8.109705 AGAAAACAATGTTGCTGATGTATACA 57.890 30.769 8.27 8.27 0.00 2.29
2762 2867 7.812648 TGTATACAGAAAAATGTACAACCTGC 58.187 34.615 0.08 0.00 38.43 4.85
2887 2993 9.313118 GGACAAAAATAAGAAAATGTGACACTT 57.687 29.630 7.20 0.00 0.00 3.16
2926 3032 6.610075 AAACCCAGCAATGAAACATAGAAT 57.390 33.333 0.00 0.00 0.00 2.40
2930 3036 5.010012 CCCAGCAATGAAACATAGAATACCC 59.990 44.000 0.00 0.00 0.00 3.69
2965 3077 2.723124 AAAGCACACATAAAAGCCGG 57.277 45.000 0.00 0.00 0.00 6.13
3007 3141 2.579684 ATTCAGGCGAGACGGAAGGC 62.580 60.000 0.00 0.00 42.06 4.35
3096 3230 3.382227 TCGACCTATGCGTTGAATAGGAA 59.618 43.478 16.23 0.89 46.66 3.36
3099 3233 5.333339 CGACCTATGCGTTGAATAGGAATTG 60.333 44.000 16.23 0.00 46.66 2.32
3100 3234 4.275936 ACCTATGCGTTGAATAGGAATTGC 59.724 41.667 16.23 0.00 46.66 3.56
3101 3235 3.715628 ATGCGTTGAATAGGAATTGCC 57.284 42.857 0.00 0.00 0.00 4.52
3102 3236 6.492156 CCTATGCGTTGAATAGGAATTGCCT 61.492 44.000 5.04 0.00 46.66 4.75
3103 3237 2.682856 TGCGTTGAATAGGAATTGCCTC 59.317 45.455 0.00 0.00 46.97 4.70
3104 3238 2.033424 GCGTTGAATAGGAATTGCCTCC 59.967 50.000 0.00 0.00 46.97 4.30
3105 3239 2.618709 CGTTGAATAGGAATTGCCTCCC 59.381 50.000 0.00 0.00 46.97 4.30
3106 3240 2.959030 GTTGAATAGGAATTGCCTCCCC 59.041 50.000 0.00 0.00 46.97 4.81
3107 3241 2.502745 TGAATAGGAATTGCCTCCCCT 58.497 47.619 0.00 0.00 46.97 4.79
3108 3242 3.675613 TGAATAGGAATTGCCTCCCCTA 58.324 45.455 0.00 0.00 46.97 3.53
3109 3243 3.652869 TGAATAGGAATTGCCTCCCCTAG 59.347 47.826 0.00 0.00 46.97 3.02
3110 3244 2.889522 TAGGAATTGCCTCCCCTAGT 57.110 50.000 0.00 0.00 46.97 2.57
3111 3245 1.987080 AGGAATTGCCTCCCCTAGTT 58.013 50.000 0.00 0.00 46.97 2.24
3112 3246 2.288525 AGGAATTGCCTCCCCTAGTTT 58.711 47.619 0.00 0.00 46.97 2.66
3113 3247 2.654896 AGGAATTGCCTCCCCTAGTTTT 59.345 45.455 0.00 0.00 46.97 2.43
3114 3248 3.077543 AGGAATTGCCTCCCCTAGTTTTT 59.922 43.478 0.00 0.00 46.97 1.94
3140 3274 8.459911 TTTAGGGATAACTAGGCTTTTATTGC 57.540 34.615 0.00 0.00 0.00 3.56
3141 3275 6.013554 AGGGATAACTAGGCTTTTATTGCA 57.986 37.500 0.00 0.00 0.00 4.08
3142 3276 6.614657 AGGGATAACTAGGCTTTTATTGCAT 58.385 36.000 0.00 0.00 0.00 3.96
3143 3277 6.491403 AGGGATAACTAGGCTTTTATTGCATG 59.509 38.462 0.00 0.00 0.00 4.06
3144 3278 6.294731 GGGATAACTAGGCTTTTATTGCATGG 60.295 42.308 0.00 0.00 0.00 3.66
3145 3279 6.265422 GGATAACTAGGCTTTTATTGCATGGT 59.735 38.462 0.00 0.00 37.51 3.55
3146 3280 7.201911 GGATAACTAGGCTTTTATTGCATGGTT 60.202 37.037 7.21 7.21 44.99 3.67
3147 3281 8.760980 ATAACTAGGCTTTTATTGCATGGTTA 57.239 30.769 10.53 10.53 46.12 2.85
3148 3282 6.699575 ACTAGGCTTTTATTGCATGGTTAG 57.300 37.500 0.00 0.00 32.43 2.34
3149 3283 6.423182 ACTAGGCTTTTATTGCATGGTTAGA 58.577 36.000 0.00 0.00 32.43 2.10
3150 3284 6.889722 ACTAGGCTTTTATTGCATGGTTAGAA 59.110 34.615 0.00 0.00 32.43 2.10
3151 3285 6.796785 AGGCTTTTATTGCATGGTTAGAAT 57.203 33.333 0.00 0.00 0.00 2.40
3152 3286 6.576185 AGGCTTTTATTGCATGGTTAGAATG 58.424 36.000 0.00 0.00 0.00 2.67
3153 3287 6.155049 AGGCTTTTATTGCATGGTTAGAATGT 59.845 34.615 0.00 0.00 0.00 2.71
3154 3288 6.818142 GGCTTTTATTGCATGGTTAGAATGTT 59.182 34.615 0.00 0.00 0.00 2.71
3155 3289 7.334171 GGCTTTTATTGCATGGTTAGAATGTTT 59.666 33.333 0.00 0.00 0.00 2.83
3156 3290 9.364989 GCTTTTATTGCATGGTTAGAATGTTTA 57.635 29.630 0.00 0.00 0.00 2.01
3159 3293 9.853555 TTTATTGCATGGTTAGAATGTTTACAG 57.146 29.630 0.00 0.00 0.00 2.74
3160 3294 5.895636 TGCATGGTTAGAATGTTTACAGG 57.104 39.130 0.00 0.00 0.00 4.00
3161 3295 4.704540 TGCATGGTTAGAATGTTTACAGGG 59.295 41.667 0.00 0.00 0.00 4.45
3162 3296 4.947388 GCATGGTTAGAATGTTTACAGGGA 59.053 41.667 0.00 0.00 0.00 4.20
3163 3297 5.594317 GCATGGTTAGAATGTTTACAGGGAT 59.406 40.000 0.00 0.00 0.00 3.85
3164 3298 6.770785 GCATGGTTAGAATGTTTACAGGGATA 59.229 38.462 0.00 0.00 0.00 2.59
3165 3299 7.284489 GCATGGTTAGAATGTTTACAGGGATAA 59.716 37.037 0.00 0.00 0.00 1.75
3166 3300 9.354673 CATGGTTAGAATGTTTACAGGGATAAT 57.645 33.333 0.00 0.00 0.00 1.28
3172 3306 8.409358 AGAATGTTTACAGGGATAATATTGGC 57.591 34.615 0.00 0.00 0.00 4.52
3173 3307 8.004215 AGAATGTTTACAGGGATAATATTGGCA 58.996 33.333 0.00 0.00 0.00 4.92
3174 3308 8.725606 AATGTTTACAGGGATAATATTGGCAT 57.274 30.769 0.00 0.00 0.00 4.40
3175 3309 7.759489 TGTTTACAGGGATAATATTGGCATC 57.241 36.000 0.00 0.00 0.00 3.91
3176 3310 6.429692 TGTTTACAGGGATAATATTGGCATCG 59.570 38.462 0.00 0.00 0.00 3.84
3177 3311 4.640771 ACAGGGATAATATTGGCATCGT 57.359 40.909 0.00 0.00 0.00 3.73
3178 3312 4.326826 ACAGGGATAATATTGGCATCGTG 58.673 43.478 0.00 0.00 0.00 4.35
3179 3313 3.691118 CAGGGATAATATTGGCATCGTGG 59.309 47.826 0.00 0.00 0.00 4.94
3180 3314 3.016736 GGGATAATATTGGCATCGTGGG 58.983 50.000 0.00 0.00 0.00 4.61
3181 3315 3.016736 GGATAATATTGGCATCGTGGGG 58.983 50.000 0.00 0.00 0.00 4.96
3182 3316 3.308117 GGATAATATTGGCATCGTGGGGA 60.308 47.826 0.00 0.00 0.00 4.81
3183 3317 2.978156 AATATTGGCATCGTGGGGAT 57.022 45.000 0.00 0.00 35.09 3.85
3189 3323 3.562250 CATCGTGGGGATGCCCTA 58.438 61.111 24.41 9.41 45.57 3.53
3190 3324 1.836391 CATCGTGGGGATGCCCTAA 59.164 57.895 24.41 9.04 45.57 2.69
3191 3325 0.535102 CATCGTGGGGATGCCCTAAC 60.535 60.000 24.41 13.22 45.57 2.34
3192 3326 1.705997 ATCGTGGGGATGCCCTAACC 61.706 60.000 24.41 7.73 44.66 2.85
3193 3327 2.675242 CGTGGGGATGCCCTAACCA 61.675 63.158 24.41 0.00 44.66 3.67
3194 3328 1.930520 GTGGGGATGCCCTAACCAT 59.069 57.895 24.41 0.00 44.66 3.55
3195 3329 1.145571 GTGGGGATGCCCTAACCATA 58.854 55.000 24.41 0.00 44.66 2.74
3196 3330 1.710809 GTGGGGATGCCCTAACCATAT 59.289 52.381 24.41 0.00 44.66 1.78
3197 3331 2.916934 GTGGGGATGCCCTAACCATATA 59.083 50.000 24.41 0.00 44.66 0.86
3198 3332 3.527665 GTGGGGATGCCCTAACCATATAT 59.472 47.826 24.41 0.00 44.66 0.86
3199 3333 3.527253 TGGGGATGCCCTAACCATATATG 59.473 47.826 24.41 5.68 44.66 1.78
3200 3334 3.527665 GGGGATGCCCTAACCATATATGT 59.472 47.826 16.52 0.00 44.66 2.29
3201 3335 4.385310 GGGGATGCCCTAACCATATATGTC 60.385 50.000 16.52 0.00 44.66 3.06
3202 3336 4.475016 GGGATGCCCTAACCATATATGTCT 59.525 45.833 11.73 1.03 41.34 3.41
3203 3337 5.396884 GGGATGCCCTAACCATATATGTCTC 60.397 48.000 11.73 0.00 41.34 3.36
3204 3338 5.396884 GGATGCCCTAACCATATATGTCTCC 60.397 48.000 11.73 1.42 0.00 3.71
3205 3339 4.763355 TGCCCTAACCATATATGTCTCCT 58.237 43.478 11.73 0.00 0.00 3.69
3206 3340 4.777896 TGCCCTAACCATATATGTCTCCTC 59.222 45.833 11.73 0.00 0.00 3.71
3207 3341 4.777896 GCCCTAACCATATATGTCTCCTCA 59.222 45.833 11.73 0.00 0.00 3.86
3208 3342 5.105146 GCCCTAACCATATATGTCTCCTCAG 60.105 48.000 11.73 0.00 0.00 3.35
3209 3343 5.423610 CCCTAACCATATATGTCTCCTCAGG 59.576 48.000 11.73 7.57 0.00 3.86
3210 3344 5.423610 CCTAACCATATATGTCTCCTCAGGG 59.576 48.000 11.73 0.00 0.00 4.45
3211 3345 3.796111 ACCATATATGTCTCCTCAGGGG 58.204 50.000 11.73 0.00 0.00 4.79
3212 3346 3.406152 ACCATATATGTCTCCTCAGGGGA 59.594 47.826 11.73 0.00 42.77 4.81
3213 3347 4.140447 ACCATATATGTCTCCTCAGGGGAA 60.140 45.833 11.73 0.00 44.58 3.97
3214 3348 4.469227 CCATATATGTCTCCTCAGGGGAAG 59.531 50.000 11.73 0.00 44.58 3.46
3215 3349 2.478872 TATGTCTCCTCAGGGGAAGG 57.521 55.000 0.00 0.00 44.58 3.46
3216 3350 0.327000 ATGTCTCCTCAGGGGAAGGG 60.327 60.000 0.00 0.00 44.58 3.95
3217 3351 1.392534 GTCTCCTCAGGGGAAGGGA 59.607 63.158 0.00 0.00 44.58 4.20
3218 3352 0.252742 GTCTCCTCAGGGGAAGGGAA 60.253 60.000 0.00 0.00 44.58 3.97
3219 3353 0.496382 TCTCCTCAGGGGAAGGGAAA 59.504 55.000 0.00 0.00 44.58 3.13
3220 3354 0.621082 CTCCTCAGGGGAAGGGAAAC 59.379 60.000 0.00 0.00 44.58 2.78
3221 3355 0.104144 TCCTCAGGGGAAGGGAAACA 60.104 55.000 0.00 0.00 41.91 2.83
3222 3356 0.038310 CCTCAGGGGAAGGGAAACAC 59.962 60.000 0.00 0.00 37.23 3.32
3223 3357 0.038310 CTCAGGGGAAGGGAAACACC 59.962 60.000 0.00 0.00 38.08 4.16
3224 3358 0.699577 TCAGGGGAAGGGAAACACCA 60.700 55.000 0.00 0.00 41.20 4.17
3225 3359 0.409484 CAGGGGAAGGGAAACACCAT 59.591 55.000 0.00 0.00 41.20 3.55
3226 3360 1.638589 CAGGGGAAGGGAAACACCATA 59.361 52.381 0.00 0.00 41.20 2.74
3227 3361 1.639108 AGGGGAAGGGAAACACCATAC 59.361 52.381 0.00 0.00 41.20 2.39
3228 3362 1.341679 GGGGAAGGGAAACACCATACC 60.342 57.143 0.00 0.00 41.20 2.73
3229 3363 1.639108 GGGAAGGGAAACACCATACCT 59.361 52.381 0.00 0.00 41.20 3.08
3230 3364 2.848071 GGGAAGGGAAACACCATACCTA 59.152 50.000 0.00 0.00 41.20 3.08
3231 3365 3.118000 GGGAAGGGAAACACCATACCTAG 60.118 52.174 0.00 0.00 41.20 3.02
3232 3366 3.542648 GAAGGGAAACACCATACCTAGC 58.457 50.000 0.00 0.00 41.20 3.42
3233 3367 2.846950 AGGGAAACACCATACCTAGCT 58.153 47.619 0.00 0.00 41.20 3.32
3234 3368 4.003584 AGGGAAACACCATACCTAGCTA 57.996 45.455 0.00 0.00 41.20 3.32
3235 3369 4.368067 AGGGAAACACCATACCTAGCTAA 58.632 43.478 0.00 0.00 41.20 3.09
3236 3370 4.163649 AGGGAAACACCATACCTAGCTAAC 59.836 45.833 0.00 0.00 41.20 2.34
3237 3371 4.449131 GGAAACACCATACCTAGCTAACC 58.551 47.826 0.00 0.00 38.79 2.85
3238 3372 4.163649 GGAAACACCATACCTAGCTAACCT 59.836 45.833 0.00 0.00 38.79 3.50
3239 3373 5.364735 GGAAACACCATACCTAGCTAACCTA 59.635 44.000 0.00 0.00 38.79 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.711060 AACACGCCGTCAACAACAGG 61.711 55.000 0.00 0.00 0.00 4.00
10 11 1.425825 CAACACGCCGTCAACAACA 59.574 52.632 0.00 0.00 0.00 3.33
13 14 3.578272 GCCAACACGCCGTCAACA 61.578 61.111 0.00 0.00 0.00 3.33
183 184 1.807573 GCCGAAGAAGAGCCGACTG 60.808 63.158 0.00 0.00 0.00 3.51
222 223 3.181491 CGACTTCACCACAACAACCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
283 284 2.741092 GAACGGACCACCTGCTGA 59.259 61.111 0.00 0.00 0.00 4.26
289 290 3.871248 GACCACCGAACGGACCACC 62.871 68.421 20.14 1.68 38.96 4.61
374 375 2.047655 TCAACCACCCGCATCGAC 60.048 61.111 0.00 0.00 0.00 4.20
425 426 1.367471 CAACACTCACCGCAGAGGA 59.633 57.895 0.00 0.00 45.00 3.71
459 460 3.005261 GCAAGTGACTCTGACTTCTCTGA 59.995 47.826 0.00 0.00 31.05 3.27
461 462 3.230134 AGCAAGTGACTCTGACTTCTCT 58.770 45.455 0.00 0.00 31.05 3.10
476 477 0.326238 TCCCTAATCCCCGAGCAAGT 60.326 55.000 0.00 0.00 0.00 3.16
509 510 2.663602 CGTCATCACTTCTCTCCAAACG 59.336 50.000 0.00 0.00 0.00 3.60
516 518 2.478709 GCGTCATCGTCATCACTTCTCT 60.479 50.000 0.00 0.00 39.49 3.10
538 540 1.344458 CTCGTCAAGCTAGCACACAG 58.656 55.000 18.83 5.35 0.00 3.66
559 561 3.805422 CACGCACACCTTTACAAAGAGTA 59.195 43.478 3.25 0.00 38.28 2.59
615 617 2.134346 CGGAAAACCGGACGAAAACTA 58.866 47.619 9.46 0.00 0.00 2.24
616 618 0.939419 CGGAAAACCGGACGAAAACT 59.061 50.000 9.46 0.00 0.00 2.66
672 674 6.099341 CCGAGGTAAAAGCTTTGCATTATTT 58.901 36.000 13.54 0.00 0.00 1.40
673 675 5.185056 ACCGAGGTAAAAGCTTTGCATTATT 59.815 36.000 13.54 0.00 0.00 1.40
676 678 2.890945 ACCGAGGTAAAAGCTTTGCATT 59.109 40.909 13.54 0.00 0.00 3.56
678 680 1.975660 ACCGAGGTAAAAGCTTTGCA 58.024 45.000 13.54 0.58 0.00 4.08
722 724 2.041819 ATGTCTCGGTCCCCCTCC 60.042 66.667 0.00 0.00 0.00 4.30
723 725 3.095347 GCATGTCTCGGTCCCCCTC 62.095 68.421 0.00 0.00 0.00 4.30
725 727 3.391665 CTGCATGTCTCGGTCCCCC 62.392 68.421 0.00 0.00 0.00 5.40
726 728 1.899437 TTCTGCATGTCTCGGTCCCC 61.899 60.000 0.00 0.00 0.00 4.81
728 730 1.808411 TTTTCTGCATGTCTCGGTCC 58.192 50.000 0.00 0.00 0.00 4.46
730 732 3.411446 TGATTTTTCTGCATGTCTCGGT 58.589 40.909 0.00 0.00 0.00 4.69
731 733 4.161333 GTTGATTTTTCTGCATGTCTCGG 58.839 43.478 0.00 0.00 0.00 4.63
759 762 8.838649 ATAAAATAAGGGAAACACTATGGCTT 57.161 30.769 0.00 0.00 0.00 4.35
781 784 9.834628 CGCCAAAACAACTTTCTATTTCTATAA 57.165 29.630 0.00 0.00 0.00 0.98
801 804 0.604243 ACGCATGTTAGGACGCCAAA 60.604 50.000 0.00 0.00 0.00 3.28
813 816 1.740380 GCTGGATGTGTCTACGCATGT 60.740 52.381 13.54 0.00 46.01 3.21
864 867 3.627714 CGCGGTTACGGTGTTCAA 58.372 55.556 0.00 0.00 41.36 2.69
912 941 4.673298 TGCGATGGTTGCGGACGT 62.673 61.111 0.00 0.00 34.24 4.34
934 963 0.179018 GGGATGCTGGATTTAGCCGT 60.179 55.000 0.00 0.00 43.02 5.68
1295 1326 0.924090 GCAACTCATCGTCGATGTCC 59.076 55.000 29.22 13.71 40.55 4.02
1412 1443 6.307155 GCAACATCACAACTACACTATCAAC 58.693 40.000 0.00 0.00 0.00 3.18
1416 1447 4.261801 GGGCAACATCACAACTACACTAT 58.738 43.478 0.00 0.00 39.74 2.12
1418 1449 2.158682 TGGGCAACATCACAACTACACT 60.159 45.455 0.00 0.00 39.74 3.55
1430 1461 6.096001 GTCTCATATTTTCTTCTGGGCAACAT 59.904 38.462 0.00 0.00 39.74 2.71
1436 1467 6.886459 TCCTTTGTCTCATATTTTCTTCTGGG 59.114 38.462 0.00 0.00 0.00 4.45
1447 1478 3.706594 TCGGCTCTTCCTTTGTCTCATAT 59.293 43.478 0.00 0.00 0.00 1.78
1448 1479 3.096852 TCGGCTCTTCCTTTGTCTCATA 58.903 45.455 0.00 0.00 0.00 2.15
1460 1491 2.948979 TCTCTCATCTCTTCGGCTCTTC 59.051 50.000 0.00 0.00 0.00 2.87
1461 1492 2.951642 CTCTCTCATCTCTTCGGCTCTT 59.048 50.000 0.00 0.00 0.00 2.85
1462 1493 2.092429 ACTCTCTCATCTCTTCGGCTCT 60.092 50.000 0.00 0.00 0.00 4.09
1463 1494 2.033299 CACTCTCTCATCTCTTCGGCTC 59.967 54.545 0.00 0.00 0.00 4.70
1464 1495 2.023673 CACTCTCTCATCTCTTCGGCT 58.976 52.381 0.00 0.00 0.00 5.52
1465 1496 2.020720 TCACTCTCTCATCTCTTCGGC 58.979 52.381 0.00 0.00 0.00 5.54
1466 1497 2.033299 GCTCACTCTCTCATCTCTTCGG 59.967 54.545 0.00 0.00 0.00 4.30
1467 1498 2.286359 CGCTCACTCTCTCATCTCTTCG 60.286 54.545 0.00 0.00 0.00 3.79
1513 1592 7.980662 GGTTACTAGAATCTACAACTTCTTCCC 59.019 40.741 0.00 0.00 33.83 3.97
1524 1603 5.335819 GGCCAGATCGGTTACTAGAATCTAC 60.336 48.000 0.00 0.00 36.97 2.59
1538 1617 1.065418 ACCAAAACTAGGCCAGATCGG 60.065 52.381 5.01 0.00 38.11 4.18
1543 1622 2.040412 AGGAAGACCAAAACTAGGCCAG 59.960 50.000 5.01 2.64 38.94 4.85
1566 1645 2.493035 CAAAAATCCCAAGGCCAACAC 58.507 47.619 5.01 0.00 0.00 3.32
1587 1666 0.611062 TGAGTCGGTACCTCCCACTG 60.611 60.000 10.90 0.00 0.00 3.66
1645 1724 9.938280 AAACCAAGTAAAAGCTAAAAAGAAAGT 57.062 25.926 0.00 0.00 0.00 2.66
1814 1895 9.482627 AGACTTGTGTTGAAATTAGAAGTAGAG 57.517 33.333 0.00 0.00 0.00 2.43
1965 2046 9.796120 TTCCTTTTGTTAACAGAAATTGTGTAG 57.204 29.630 12.16 0.00 40.74 2.74
1968 2049 8.472683 TGTTCCTTTTGTTAACAGAAATTGTG 57.527 30.769 12.16 1.55 40.74 3.33
2479 2576 7.950236 AGTTTCTCGTATTGTTCTTCGTTATG 58.050 34.615 0.00 0.00 0.00 1.90
2480 2577 9.070149 GTAGTTTCTCGTATTGTTCTTCGTTAT 57.930 33.333 0.00 0.00 0.00 1.89
2513 2610 5.495926 ACAATGTTCAAATATTTGGGCCA 57.504 34.783 24.40 18.44 38.66 5.36
2575 2672 7.089538 ACACATTTTTCATATGCATTTCGACA 58.910 30.769 3.54 0.00 0.00 4.35
2576 2673 7.485913 AGACACATTTTTCATATGCATTTCGAC 59.514 33.333 3.54 0.00 0.00 4.20
2577 2674 7.485595 CAGACACATTTTTCATATGCATTTCGA 59.514 33.333 3.54 0.00 0.00 3.71
2581 2680 9.491675 TTTTCAGACACATTTTTCATATGCATT 57.508 25.926 3.54 0.00 0.00 3.56
2601 2700 5.987777 TGCATTTCAACCATGTTTTTCAG 57.012 34.783 0.00 0.00 0.00 3.02
2609 2708 9.100554 ACATTTTACATATGCATTTCAACCATG 57.899 29.630 3.54 2.89 0.00 3.66
2720 2825 8.236586 TCTGTATACATCAGCAACATTGTTTTC 58.763 33.333 5.91 0.00 33.48 2.29
2799 2904 9.677567 GTGCTTTCATTTTCTATGTTCTTTACA 57.322 29.630 0.00 0.00 41.97 2.41
2805 2910 8.801715 TTTCTGTGCTTTCATTTTCTATGTTC 57.198 30.769 0.00 0.00 0.00 3.18
2837 2943 5.844301 ATTTTCATTGTCGGTTTCATTGC 57.156 34.783 0.00 0.00 0.00 3.56
2906 3012 5.010012 GGGTATTCTATGTTTCATTGCTGGG 59.990 44.000 0.00 0.00 0.00 4.45
2908 3014 6.698008 TGGGTATTCTATGTTTCATTGCTG 57.302 37.500 0.00 0.00 0.00 4.41
2909 3015 7.716799 TTTGGGTATTCTATGTTTCATTGCT 57.283 32.000 0.00 0.00 0.00 3.91
2949 3061 0.170339 GGTCCGGCTTTTATGTGTGC 59.830 55.000 0.00 0.00 0.00 4.57
2961 3073 1.741770 CAGTTACTGCTGGTCCGGC 60.742 63.158 16.45 16.45 36.10 6.13
2988 3122 1.517832 CCTTCCGTCTCGCCTGAAT 59.482 57.895 0.00 0.00 0.00 2.57
3114 3248 8.909923 GCAATAAAAGCCTAGTTATCCCTAAAA 58.090 33.333 0.00 0.00 0.00 1.52
3115 3249 8.056400 TGCAATAAAAGCCTAGTTATCCCTAAA 58.944 33.333 0.00 0.00 0.00 1.85
3116 3250 7.579105 TGCAATAAAAGCCTAGTTATCCCTAA 58.421 34.615 0.00 0.00 0.00 2.69
3117 3251 7.144234 TGCAATAAAAGCCTAGTTATCCCTA 57.856 36.000 0.00 0.00 0.00 3.53
3118 3252 6.013554 TGCAATAAAAGCCTAGTTATCCCT 57.986 37.500 0.00 0.00 0.00 4.20
3119 3253 6.294731 CCATGCAATAAAAGCCTAGTTATCCC 60.295 42.308 0.00 0.00 0.00 3.85
3120 3254 6.265422 ACCATGCAATAAAAGCCTAGTTATCC 59.735 38.462 0.00 0.00 0.00 2.59
3121 3255 7.277174 ACCATGCAATAAAAGCCTAGTTATC 57.723 36.000 0.00 0.00 0.00 1.75
3122 3256 7.660030 AACCATGCAATAAAAGCCTAGTTAT 57.340 32.000 0.00 0.00 0.00 1.89
3123 3257 8.050325 TCTAACCATGCAATAAAAGCCTAGTTA 58.950 33.333 0.00 0.00 0.00 2.24
3124 3258 6.889722 TCTAACCATGCAATAAAAGCCTAGTT 59.110 34.615 0.00 0.00 0.00 2.24
3125 3259 6.423182 TCTAACCATGCAATAAAAGCCTAGT 58.577 36.000 0.00 0.00 0.00 2.57
3126 3260 6.942532 TCTAACCATGCAATAAAAGCCTAG 57.057 37.500 0.00 0.00 0.00 3.02
3127 3261 7.341769 ACATTCTAACCATGCAATAAAAGCCTA 59.658 33.333 0.00 0.00 0.00 3.93
3128 3262 6.155049 ACATTCTAACCATGCAATAAAAGCCT 59.845 34.615 0.00 0.00 0.00 4.58
3129 3263 6.340522 ACATTCTAACCATGCAATAAAAGCC 58.659 36.000 0.00 0.00 0.00 4.35
3130 3264 7.832503 AACATTCTAACCATGCAATAAAAGC 57.167 32.000 0.00 0.00 0.00 3.51
3133 3267 9.853555 CTGTAAACATTCTAACCATGCAATAAA 57.146 29.630 0.00 0.00 0.00 1.40
3134 3268 8.465999 CCTGTAAACATTCTAACCATGCAATAA 58.534 33.333 0.00 0.00 0.00 1.40
3135 3269 7.068103 CCCTGTAAACATTCTAACCATGCAATA 59.932 37.037 0.00 0.00 0.00 1.90
3136 3270 6.127366 CCCTGTAAACATTCTAACCATGCAAT 60.127 38.462 0.00 0.00 0.00 3.56
3137 3271 5.184864 CCCTGTAAACATTCTAACCATGCAA 59.815 40.000 0.00 0.00 0.00 4.08
3138 3272 4.704540 CCCTGTAAACATTCTAACCATGCA 59.295 41.667 0.00 0.00 0.00 3.96
3139 3273 4.947388 TCCCTGTAAACATTCTAACCATGC 59.053 41.667 0.00 0.00 0.00 4.06
3140 3274 8.746052 TTATCCCTGTAAACATTCTAACCATG 57.254 34.615 0.00 0.00 0.00 3.66
3146 3280 9.515226 GCCAATATTATCCCTGTAAACATTCTA 57.485 33.333 0.00 0.00 0.00 2.10
3147 3281 8.004215 TGCCAATATTATCCCTGTAAACATTCT 58.996 33.333 0.00 0.00 0.00 2.40
3148 3282 8.177119 TGCCAATATTATCCCTGTAAACATTC 57.823 34.615 0.00 0.00 0.00 2.67
3149 3283 8.725606 ATGCCAATATTATCCCTGTAAACATT 57.274 30.769 0.00 0.00 0.00 2.71
3150 3284 7.121168 CGATGCCAATATTATCCCTGTAAACAT 59.879 37.037 0.00 0.00 0.00 2.71
3151 3285 6.429692 CGATGCCAATATTATCCCTGTAAACA 59.570 38.462 0.00 0.00 0.00 2.83
3152 3286 6.430000 ACGATGCCAATATTATCCCTGTAAAC 59.570 38.462 0.00 0.00 0.00 2.01
3153 3287 6.429692 CACGATGCCAATATTATCCCTGTAAA 59.570 38.462 0.00 0.00 0.00 2.01
3154 3288 5.937540 CACGATGCCAATATTATCCCTGTAA 59.062 40.000 0.00 0.00 0.00 2.41
3155 3289 5.487433 CACGATGCCAATATTATCCCTGTA 58.513 41.667 0.00 0.00 0.00 2.74
3156 3290 4.326826 CACGATGCCAATATTATCCCTGT 58.673 43.478 0.00 0.00 0.00 4.00
3157 3291 3.691118 CCACGATGCCAATATTATCCCTG 59.309 47.826 0.00 0.00 0.00 4.45
3158 3292 3.308402 CCCACGATGCCAATATTATCCCT 60.308 47.826 0.00 0.00 0.00 4.20
3159 3293 3.016736 CCCACGATGCCAATATTATCCC 58.983 50.000 0.00 0.00 0.00 3.85
3160 3294 3.016736 CCCCACGATGCCAATATTATCC 58.983 50.000 0.00 0.00 0.00 2.59
3161 3295 3.950397 TCCCCACGATGCCAATATTATC 58.050 45.455 0.00 0.00 0.00 1.75
3162 3296 4.272489 CATCCCCACGATGCCAATATTAT 58.728 43.478 0.00 0.00 41.99 1.28
3163 3297 3.684908 CATCCCCACGATGCCAATATTA 58.315 45.455 0.00 0.00 41.99 0.98
3164 3298 2.517959 CATCCCCACGATGCCAATATT 58.482 47.619 0.00 0.00 41.99 1.28
3165 3299 2.205022 CATCCCCACGATGCCAATAT 57.795 50.000 0.00 0.00 41.99 1.28
3166 3300 3.723772 CATCCCCACGATGCCAATA 57.276 52.632 0.00 0.00 41.99 1.90
3167 3301 4.585070 CATCCCCACGATGCCAAT 57.415 55.556 0.00 0.00 41.99 3.16
3179 3313 4.475016 AGACATATATGGTTAGGGCATCCC 59.525 45.833 16.96 0.00 45.90 3.85
3180 3314 5.396884 GGAGACATATATGGTTAGGGCATCC 60.397 48.000 16.96 6.64 0.00 3.51
3181 3315 5.426833 AGGAGACATATATGGTTAGGGCATC 59.573 44.000 16.96 2.37 0.00 3.91
3182 3316 5.353986 AGGAGACATATATGGTTAGGGCAT 58.646 41.667 16.96 0.00 0.00 4.40
3183 3317 4.763355 AGGAGACATATATGGTTAGGGCA 58.237 43.478 16.96 0.00 0.00 5.36
3184 3318 4.777896 TGAGGAGACATATATGGTTAGGGC 59.222 45.833 16.96 2.02 0.00 5.19
3185 3319 5.423610 CCTGAGGAGACATATATGGTTAGGG 59.576 48.000 16.96 5.11 0.00 3.53
3186 3320 5.423610 CCCTGAGGAGACATATATGGTTAGG 59.576 48.000 16.96 12.45 33.47 2.69
3187 3321 5.423610 CCCCTGAGGAGACATATATGGTTAG 59.576 48.000 16.96 5.37 38.24 2.34
3188 3322 5.077300 TCCCCTGAGGAGACATATATGGTTA 59.923 44.000 16.96 0.00 40.93 2.85
3189 3323 4.140447 TCCCCTGAGGAGACATATATGGTT 60.140 45.833 16.96 4.44 40.93 3.67
3190 3324 3.406152 TCCCCTGAGGAGACATATATGGT 59.594 47.826 16.96 3.71 40.93 3.55
3191 3325 4.066578 TCCCCTGAGGAGACATATATGG 57.933 50.000 16.96 0.00 40.93 2.74
3202 3336 0.104144 TGTTTCCCTTCCCCTGAGGA 60.104 55.000 0.00 0.00 45.68 3.71
3203 3337 0.038310 GTGTTTCCCTTCCCCTGAGG 59.962 60.000 0.00 0.00 0.00 3.86
3204 3338 0.038310 GGTGTTTCCCTTCCCCTGAG 59.962 60.000 0.00 0.00 0.00 3.35
3205 3339 0.699577 TGGTGTTTCCCTTCCCCTGA 60.700 55.000 0.00 0.00 34.77 3.86
3206 3340 0.409484 ATGGTGTTTCCCTTCCCCTG 59.591 55.000 0.00 0.00 34.77 4.45
3207 3341 1.639108 GTATGGTGTTTCCCTTCCCCT 59.361 52.381 0.00 0.00 34.77 4.79
3208 3342 1.341679 GGTATGGTGTTTCCCTTCCCC 60.342 57.143 0.00 0.00 34.77 4.81
3209 3343 1.639108 AGGTATGGTGTTTCCCTTCCC 59.361 52.381 0.00 0.00 34.77 3.97
3210 3344 3.684697 GCTAGGTATGGTGTTTCCCTTCC 60.685 52.174 0.00 0.00 34.77 3.46
3211 3345 3.200165 AGCTAGGTATGGTGTTTCCCTTC 59.800 47.826 0.00 0.00 34.77 3.46
3212 3346 3.190439 AGCTAGGTATGGTGTTTCCCTT 58.810 45.455 0.00 0.00 34.77 3.95
3213 3347 2.846950 AGCTAGGTATGGTGTTTCCCT 58.153 47.619 0.00 0.00 34.77 4.20
3214 3348 4.449131 GTTAGCTAGGTATGGTGTTTCCC 58.551 47.826 1.80 0.00 34.77 3.97
3215 3349 4.163649 AGGTTAGCTAGGTATGGTGTTTCC 59.836 45.833 1.80 0.00 0.00 3.13
3216 3350 5.354842 AGGTTAGCTAGGTATGGTGTTTC 57.645 43.478 1.80 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.