>input_sequence_56648
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--------------------------------------------------------------------ACCGGACACGCA
CCCGCATCTGTGCCGCCTC--CACACCACCCGCCGTGCATAGTACAACCAACACGGCCATGGCGCCATCCGCGCGCGTGT
CGCTGATGCTCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCCGCCAGGCACGCAGACGCCGCCGCCGGCGGCCTCGCGTGC
AATCCGCTCCAGGACAAGACGTGCAAGCCGGCGGACCCCAAGGCGCCCGAGAACACGGAGGAGGGCGGCGGGTTCGGCGC
GAGGCTGCCATCGCCGCCCATTCCGGGCCACGGTATGATCGACGGGGACATCGACGATGAGTTGCCGTCGTTCAGCACCC
ACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACATCTAAGTGCATGGTTGTGTCTTCTCGCATTC
GCGTTGATAGTGTAGTTGTGATGTTGCCCAGAAGAAAATATGAGACAAAGGAAGAGCCGAAGAGATGAGAGAGTGAGCGT
------------------------------------------------CCCTGTTAATATCGTGGACGTTCGGGAAGAAG
TTGTAGATTCTAGTAACCGATCTGGCCTAGTTTTGGTCTTCCTAGTGTTGGCCTTGGGATTTTTGCAGTGGGAGGTACCG
ACTCACTGTTTCGCCTTGGTCCTTCATTTCTTCACTTTTATTTACTTTCTTTTTAGC-TTTTACTTGGTTTTTTCTTTTT
TACTTTTTTATTCAACACATGTCTATGTTTTTT-CAAACGCGTAGTTTTTTGTATACATCAAGAACAAATTTTTGTATAT
GTTTAATATTTTTTGAATACGTGGTTAACATTATTTTGGAATAAATGTTTTGATCTCTACTTCTAATTTCAACACAAGTC
TGTATTTTCATACACATCGTACATTTCTTATATACATCAAGAACATGTTTTTATACTTTGAAAAAATTCAACTGCATAAA
TAGAATGTTTGTTTAAATATATGTATTGACGTATTTTCATACACACTACACAATTTCTGTTAACAAAAGGAACATATTTT
AAGGACATGATAAATC-TTTTTAAGAACGTGACTAATATATGCTTTGATTTCTACTTTTTTTCATATATATTATACATTT
TTGGTTTACATATGAAAAAAAATATACACGTTTGACATTTTCAAATATAAGAATAACATTATTTAAGTATATGTTTTGTT
GTCTAATTTTTTAAACACATTGTACATATTTCTTATATACATCAAATGTTTTTTATACACGTTTAGGTTTCTT----CAA
ATAAA---------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G024800
CCGGAGGGCCTGTTGTTGACGGCGTGTTGGCGTCCTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATTCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGGCTTCTGTGGCAACGACGATAGGGCAAG
TGAAGTCGGAGACATTGCAGTGGCAGTCGGCTCTTCTTCGGCGTGTTCGTGGGATTACCTCGATTTGGTTGTTGTGGTGA
AGTCGGAGCTGTGGCGGCGGGGCCCCTGTGGCAACGATGACAGTCAGCAGGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGTCGGAGCTGCGTAGCCGTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACACATCCTCTGCGGTGAGTGTTGGTTCGACGTTCGTCCTCAGAGAAGTCAGAGTCACTT
GCTCGGGGATTAGGGATGGCGATGACGCCCGT-TTGGAGAGAAGTGATGACGATGACGCCTGTGTGCTAGCTTGACGAGG
TACTCTTTGTAAAGGTGTGCGTGGGATATCTTGGTATGTCGCTCAGCGATTTGTGATAGTTTTCGTCCGGTTTTCCGTTG
ATTAACTGGGCAAATTTTTTCTGCTTAATTAATAAATAATGCAAAGCTTTTACCTCGGTTTAAAAAAAACAGATCTGACG
GCCGGAGGGGGAC-CGAGACATGCAGAAAAATCAACCGGCTAAGCCATAGTGTTTCCCTTATTTTATAGAAATAGAAAGT
TGTTTTGGCGTCCTAACATGCGTAGACACATCCAGCGTCTATTTCAGGTTTGTCGTTGATCAGCTCTTGAACAC------
--------------------CGTAACCGCGGGGACGGTGCCCAGCCACACAAACCGAGCAACGTCCGCAACCATCGCACC
TCACGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCACGCCGCCGCGCCTCTCCTCCTGCTCACCGGACACGCA
CCCGCATCTGTGCCGCCTC--CACACCACCCGCCGTGCATAGTACAACCAACACGGCCATGGCGCCATCCGCGCGCGTGT
CGCTGATGCTCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCCGCCAGGCACGCAGACGCCGCCGCCGGCGGCCTCGCGTGC
AATCCGCTCCAGGACAAGACGTGCAAGCCGGCGGACCCCAAGGCGCCCGAGAACACGGAGGAGGGCGGCGGGTTCGGCGC
GAGGCTGCCATCGCCGCCCATTCCGGGCCACGGTATGATCGACGGGGACATCGACGATGAGTTGCCGTCGTTCAGCACCC
ACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACATCTAAGTGCATGGTTGTGTCTTCTCGCATTC
GCGTTGATAGTGTAGTTGTGATGTTGCCCAGAAGAAAATATGAGACAAAGGAAGAGCCGAAGAGATGAGAGAGTGAGCGT
------------------------------------------------CCCTGTTAATATCGTGGACGTTCGGGAAGAAG
TTGTAGATTCTAGTAACCGATCTGGCCTAGTTTTGGTCTTCCTAGTGTTGGCCTTGGGATTTTTGCAGTGGGAGGTACCG
ACTCACTGTTTCGCCTTGGTCCTTCATTTCTTCACTTTTATTTACTTTCTTTTTAGC-TTTTACTTGGTTTTTTCTTTTT
TACTTTTTTATTCAACACATGTCTATGTTTTTT-CAAACGCGTAGTTTTTTGTATACATCAAGAACAAATTTTTGTATAT
GTTTAATATTTTTTGAATACGTGGTTAACATTATTTTGGAATAAATGTTTTGATCTCTACTTCTAATTTCAACACAAGTC
TGTATTTTCATACACATCGTACATTTCTTATATACATCAAGAACATGTTTTTATACTTTGAAAAAATTCAACTGCATAAA
TAGAATGTTTGTTTAAATATATGTATTGACGTATTTTCATACACACTACACAATTTCTGTTAACAAAAGGAACATATTTT
AAGGACATGATAAATC-TTTTTAAGAACGTGACTAATATATGCTTTGATTTCTACTTTTTTTCATATATATTATACATTT
TTGGTTTACATATGAAAAAAAATATACACGTTTGACATTTTCAAATATAAGAATAACATTATTTAAGTATATGTTTTGTT
GTCTAATTTTTTAAACACATTGTACATATTTCTTATATACATCAAATGTTTTTTATACACGTTTAGGTTTCTT----CAA
ATAAATGATTAAAAAGTTTCAGACACATATTTTTTA-ACATTTTCTGAATACTATCGAAATTTATTAATTGTAACGAACT
TTTTCAAATGATATTGATATTTTTAAAA-TAATGCGATGAT-TTTTTAATGTACGTCAAGATATTTTAAACTTGCTATGA
CTGTTTTAAAAATTAAAGTATGTTCTTCATAAAT--------ATAAAGAAAAACAATAAAAGCAAAAAATAGAAATAAAT
GAACAACGGGACAAACATAACGAAGAACAATACGAGAAACTACCTAGGTTGGCCCAAATATTTGAACATTGTTCAAATAC
ATATGCAAAATGTAAAATTTGTATGAAAAAATGTC--GAAATGCATATGAAAAATGTGTCTGAAAAACATGGTTGAAATG
CATATGTAAAATGTAAAATGTGTATGAATAAAATAGTAGACATCAAAGCATATGTTT-GAAAACTTGTTAATGATGTCGT
TTAAA----AATG-TAAACATGTAGAAAACAATGTTGCTGATGTATACAGAAAAATGTACAACCTGCTTATAAAAAATAG
AAGTATAAAAAACAAAGAATACATGTAAAGAACATAGAAAATGAAAG-CACAGAAAAAAAAAGCAATGAAACCGACAATG
AAAATTGGACAAAAATAAGAAAATGTGACACTTAGAAAACCGGAAAAAAAACCCAGCAATGAAACATAGAATACCC--AA
AAAAACTGCC----AAAAAAGCACACATAAAAGCCGGACCAG----------------------CAGTAACTGCGGAAAA
CATTCAGGCGAGACGGAAGGCACCATCGCAGTAAGCGATATATAGCCCTGGCGGACAAACATCGACCTATGCCACCCTTC
AAAAAAATCGACCTATGCGTTGAATAGGAATTGCCTCCCCTAGTTTTTTTTAGGGATAACTAGGCTTTTATTGCATGGTT
AGAATGTTTACAGGGATAATATTGGCATCGTGGGGATGCCCTAACCATATATGTCTCCTCAGGGGAAGGGAAACACCATA
CCTAGCTAACCTA
>chr6A_1
CCGGAGGGTCAGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTCGAGGGCATCGATTTTGAAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGGCTTCTGTGGCAACGACGATAGGGCAAG
CGAAGTCGGAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCCTGGGATTACCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGCGGCAGCGGGGCCCCTGTGGCAACGATGACAGGCAGCACGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGTCGGAGCTGCGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGGTTCGACGTTCGTCCCCGGAGAAGTCAGAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGT-TTGGGAAGAAGTGATGACGATGACGCTTGTGTGCTAGCTTGACAAGA
CACTCTTTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGGTTTGTGACGGTTTTCGCCCGGTTTTCCGTTG
ATTAACTGGGCAATTCTCTTCTGCTTAATTAATGGATGAGGCAAATCATTTGCCTCCGTTTCGAAAAAAAA---------
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>chr7B_1
CCGGAGGGTCAGTCGTTGGCGGCGTGTTGGCGGCGTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTG--AGGTTGGTGGTATGCTTTGGTGTGGCATCGAGGCTTCTGTGGCAACGACGACAGGGCAAG
TGAAGTCGGAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCGTGGGATTACCTCGGTTTGGTTGTTGCGGTGA
AGTCGGAGCTGCGGCGACGGGGTCCCTGTGGCAACGATGACAGGCAGCACGTGGTCCGTTCGATGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGTCGGAGCTGCGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTGCATGTTTTCCTACACAGCCTCTACGGTGAGTGTTGGTTCGACGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGTGATGACGATGACGATTGTGTGCTAGCTTGACGAGG
CACTC-TTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGGTTTGTGACGGTTTTCGTCCGGTTTTCCGTTG
ATTAACTGGGCAATTCTCTTCTGCTTAATTAATGGATGAGGCAAATATTTTGCCTCCGTTTCGAAAAAAAA---------
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>chr4B_1
CCGGAGGGTCAGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCATTGGTGTGGCATCGAGGCTTCTGTGGCAACGACGACAGGGCAAG
TGAAGTCGAAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCGTGGGATTACCTCGGTTTGGTTGTTGCGGTGA
AGTCGAAGCTGCGGCGGCGGGGCCCCTGTGGCAACGATGACAGGCAGCACGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCTTTTGGATCTTTGCTTCAGAGTCGGAGCTGCGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTGCATGTTTTCCTACACAGCCCCTGCGGTGAGTGTTGGTTCGACGTTCGTCCACGGAGAAGTCGAAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGCGATAACGATGACGCTTGTGTGCTAGCTTGACGAGG
CACTC-TTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGGTTTGTGACGGTTTTCGCCCGGTTTTCCGTTG
ATTAACTGGGCAATTCTCTTCTGCTTAATTAAT-----------------------------------------------
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>chr4B_1
CCGGAGGGTCAGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGCCCAACTGGTGTGTTGGGAGGTTGGTGGTATGCATTGGTGTGGCATCGAGGCTTCTGTGGCAACGACGACAGGGAAAG
TGAAGTCGGAGACATTGCAGTGGTAGTCAGCTCTTCTTCGGCGTGTTCGTGGGATTACCTCGGTTTGGTTGTTGCGGTGA
AGTCGGAGCTGCGGCGGCGGGGCCCCTGTGGCAACGATGACAGGCAGCACATGGTCCGTTCGGTGGTCTTCCACGACGCT
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGTCAGAGCTGCGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTGCATGTTTTCCTACGCAGCCTCTGCGGTGAGTGTTGGTTCGACGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGTGACGACGATGACGCTTGTGTGCTAGCTTGACGAGG
CACTC-TTGTAAAGTTGTGCGTGGGATATCTTGGTGTGCCGCTTAGCGGTTTGTGACGGTTTTCGTCCGGTTTTCCGTTG
ATTAACTGGACAATTCTTTTCTGCTTAATTAATGGATGAGGCAAATCTTTTGCCTCCGTTTCGGAAAAAAAA--------
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>chr7A_1
CCGGAGGGTCGGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTTGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGACTTCTGTGGCAACGATGATAGTGCAAG
TGAAGTCGAAGACATTGCAGTGGTAGTCGACTCTTCTTCGGCGTGTTCCTGGGATTACCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGCGGCGGCAGGCCCCCTGTGGCAACGATGACAGGCAGCATGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGTTGGAGCTGCGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGGTTCGATGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGTTTTGGGGAGAAGTGATGACGATGACGCGTGTGTGCTAGCTTCACAAGG
CACTCTTTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGGTTTGTGACGGTTTTCGCCCGGTTTTCCGTTG
ATTAACTGGGCAATTCTCTTCTACTTAATTAATGGATGAGGCAAATCTTTTGCCTTCATTTCAAAAAAAA----------
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>chr3B_3
--GGAGGGTCGGTCATTGGCGGCGTGCTGGCGTCGTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGTTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGGCTTCTGTGGCAACCACGATTGGGCAAG
TGAAGTCGAAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCCTGGGATTACCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGGGGCGGCGGGGCCCCTATGGCAACGATGACATGCAGCACGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGCCGGAGCTGCGTAGCCCTCGATGCGCGTGGTTGAGTTCTCGC
ATGGATCTCCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGGTTCGACGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGAGGATTAAGGATGGCGATGACGCCTGTTTGGGGGAGAAGTGATGACGATGACGCTTGTGTGCTAGCTTGACAAGG
CACTCTTTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCAGTTTGTGACGTTTTTCGCCTGGTTTTCTGTTG
ATTAGCTGGGCAATTCTCTTCTGCTTAATTAATGGATGAGGCAAATCTTTTGCCTCCGTTTCAAAAAAAC----------
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>chr5B_3
--GGAGGGTCGGTCGTTGGCGGCGTGTTGGCGTCGTTTTCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGGCTTCTGTGGCAACGACGATAGGGCAAG
TGAAGTCGGAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCCTGGGATTACCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGCGGCGGCGGGGCCCCTGTGGCAACGATGACATGCAGCACGTGGTCCCTTCGGTGGTCTTCCACGA-GCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGCGGGAGCTGCGTAGCCCTTGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGGTT-GACGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGGGGATTAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGTGATGACGATGACGCTTGTGTGCTAGCTTGACAAGG
CACTCTTTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGATTTGTGACGGTTTTCGCCCGGTTTTCCGTTG
ATTAACTGAGCAATTCTTTTCTGCTTAATTGATGGATGAGGCAAATCTTTTGCCTCCGTTTTAAAAA-------------
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>chr2B_3
--GGAGGGTCGGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTCGAGGGCATCGATTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTTGAGGCTTCTGTGGCAACGACGATAGGGCGAG
TGAAGTCGGAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCCTGGGATTACCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGCGGCGGCGGGGTCCCTGTGGCAACGATGACAGGCAACACGTGGTCCGTTCGGTGGTCTTCCACGACGCC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTTAGAGTCGGAGCTGCGTAGCCCTCGATTCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGATTCGACGTTCGTCCACGGAGAAGTCGGAGTCGCTT
GCTCGGGGTTTAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGTGATGACGATGACGCTTGTGTGCTAGCTTGACAAAG
CACTCCTTGTAAAGGTGTGCGTGGGATATCTTGGTGTGCCGCTCAGCGGTTTGTGACGGTTTTCGCCCGGTTTTCCGTTG
ATTAACCGGGCAATTCTCTTCTGCTTAATTAATGGATGAGGCAAATCTTTTGCCTCCGTTTCGAAAAAAAACA-------
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>chr1B_3
--GGAGGGTCGGTCGTTGGCGGCGTGTTGGCGTCGTTTCCCTCTCGAGGGCATCGGTTTTGGAGTTCAATCCGGTCAGAG
GGACCAGCTGGTGTGTTGGGAGGTTGGTGGTATGCGTTGGTGTGGCGTCGAGGCTTCTGTGGCAACGACGATAGGGCAAG
TGAAGTCGGAGACATTGCAGTGGTAGTCGGCTCTTCTTCGGCGTGTTCCTGGGATTATCTCGGTTTGGTTGTTGTGGTGA
AGTCGGAGCTGCGGCGGCGGGGCCCCTGTGGCAACGATGACATGCAGCACGTGGTCCGTTCGGTGGTCTTCCACGACGAC
AGTCTTGCATAGTTCTCCTTTGGATCTTTGCTTCAGAGCCAGAGCCGTGTAGCCCTCGATGCGGGTGGTTGAGTTCTGGC
ATGGATCTTCATGTTTTCCTACTCAGCCTCTGCGGTGAGTGTTGGTTCAACGTTCGTCCACGGAGAAGTCGGAGTCGTTT
GCTCAGGGATCAGGGATGGCGATGACGCCTGT-TTGGGGAGAAGTAATGATGATGACACTTGTGTGCTAGCTTGACAAGA
CACTCTTTGTAAAGGTGTACGTGGGATATCTTGGTGTGCCGCTCAGCGATTTGTGACGATTTTCGCCCGGTTTTCCGTTG
ATTAATTGGACAATTCTCTTCTGCTTGATTAATGGATGAGGCAAATCTTTTGCCTTCGTTT-------------------
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>chr3D_710
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----------------------------------------------------------------------AGATCTGACG
GCCACAAAGTGGGTCGAGACATGTAGAAAAATCAACCGGCCGAGTCATAGTCTTTCCGTTATTGTATAGAAATAGAAAGT
TGTGTTGGCATCCTAGCATGCGAAGACACATCCAGCGTCTATTTCAGGCTTGTCGTTGATCAGCTCCTGAACACCCGCTC
CCATCGTCTATTTCAGGCAGCGTAACCGTGGGGACGGTGCCCAGCCACACAAACCGAGCAGCGTCCGCAACCATCGCACC
TCTCGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCATGCCGTCGCGCCTCTCCTCCTGCTCACCAGACACGTA
CCTGCATTTCTGCCGCCTC--CACACCACCCGACGTGCATAGTACAACCACCATGGCCATGGCGCCATCCGCGCGCGTGT
CGCTGATGCTCGCCGTGGTGCTCGTGTGCGCGCTGCTCGCCGCCAGGCCTGCAGAGGCGA---CCGGCGGCTTGGTGTGC
AATCCGCTCCAGGACAAGACGTGCAAGTCGGGGGACCCCAAGGCGTCTGAGAACACGGAGGAGGGGGGCGGGTTCGGCGC
GAAGCTGCCATCGCCGCCCGTTCCGGGCCACGGTATGATCGACGGAGACATCGACGATGAGTTGCCGTCGTTCAGCACCC
ACAAGACCATCCTCGGTCACTGGGAGGATCCGGTGCTCGAAGTCTGACATCTACGTGCATGGTTGTGTCTTCTTGCATTC
GCATTGCTTGTGTAGTTGTGTTGTTGTCCAGAAGAAAGAATGAGACAAAG--------GAAGAGATGAGAGAGTGAGCGT
GCCACGATAAATG----------------------ATTTGCCACTTGTCCCTGTTAATATCGTGGACGCTCAGGAAGAAG
TTATAGATTCTAGTAATTGATATGGCCTAGTTTTGGTCTTCTTATTGTTGGCCTTGGGATTTTTGGAGTGGGAGGTACCG
ACTCACTGATTCGCCTTGGTCCTTCATTTCTTCAGTTTTATTTTGTTTCTTTTTAGGTTTTTACTTGG-TTTTTC-TTTT
TACTTTTTTATTCAACACATGTCTATGTTTTTT-CAAACACGTAGTTTTTTGTATACATCAAGAACTAATTTTTGTATAT
GTTTAATATTTTTTTAATACGCGATTAACATTATTTTGGAATAAATGTTTTGATGTCTACTTCTATTTTCAACACAAGTC
TATATTTTCATACACATCGTACATTTATTATATACATCAAGAACATGTTTTTATACTTC-AAAAAATTCAAGTCCATAAA
TAGAATGTTTATTTAAATATATGTATTGACGTCTTTTCATACACATTATACAATTTCTGTAAACATAAGGAACATATTTT
AAGGACATCACTAACATTTTTTAAGAACATGACTAATTTATGCTTTGATTTCTACTT-TTTTCATATATATTATACATTT
TTGGTTTACATATGAAAA--AATATACACGTTTAACATTCTCAAATACAAGAATAACATTATTTAAGTATATGTTTTGTT
GTCTAATT-TTTATACACACTGTACATATTTTG--TATACGTGAAACGTTTTTTATACATGTTTAGGTTTCTT----CAT
ATAAATGATTAAAAAGTTAAAAACACATGTTTTTTTAATATTTTCCGAATACTATCGAAATTTATTAATTGTAACAAACT
TTTTAAATGTTTTAAT---TTTTTAAAAGTAATGCAATGAT-TTTTGAATGTATGTCAACATATTTTAAACGTACTATGA
ACATTTTCAAAATTAAAGTATGTTCTTCAGAATATGAATCAAATCAATAAAAGCAAAG-------AAAATAGAAATAAAT
GAACAACATGACAAAAGTAACGAAGAACAATACGAGAAACTACCTAGGCCGGCCCAAATATTTGAACATTGTTCAAATAC
ATATGCAAAATGTAAAATTTGTATAG-AAAAATGTTTGAGATGCAGATGAAAATGTGTATCAGGAAAAATTGTTGAGATT
CAT-------ATGTAAAATGTGTATGAATGAAATAGTAGACATCAAACCATATGTTTTGAAAAATTATTAATCATGTAGT
TTAAATAAAAATGTTAAACATGTATAAAACAATGTTGCTGATGCATAC-GAAAAATGTACAGCCTGTTTATAAA------
------------------------------AACATAGAAAATGAAAA-CGCAGAAAAAAAAC-CAATGAAACCGACAATG
AAAATTGGACAAAAATAAGAAAATGTAATACTGAGAAAACCGAAAAAAGAAACTGGCAATGAAACTTAGAACACCAGAAA
AATAAACCGCAGGAAAAAACACACACATAAAAACCGCACCAGCAGGAACCCATATTGGTCCGGCCAGTAACTGCGGAAAA
CTTTCAGGTGAGACGGAAGGTACCATCGCAGTAAGCGATATATAGCCCTGGCGGACAAACATCGACCTATGCCACCCT--
-AAAGAAACGACCTATGCGTTGAATAGGATTT------------------------------------------------
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>chr3A_724
GAGG----------------------------------------------------------------------------
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----------GGGTCAAGACATGCAGAAAAATCAATTGGTTGAGCCATAGTCTTTCCGTTATTGTATAGAAATAGAAAGT
TGTGTTGGCGTCCTAGCATGCGAAGACACATCCATCGTCTATTTCAGGTATGTCGTTGATCAGCTCATGAACACCCGCTC
CCA----------------GCGTAACCATGGGGACGGTGCCCAGCCACACAAACCGAGCAGCCTCCGCAACCATCGCATC
TCTCGGCTAAATCCAGCATCCCATCGCCGCCTTTTAAAGCGCATGCCGCCGCGCCTCTCCTCCTGCTCACCAGACACGCA
CCTGCATCTGTGCCGCCTCCACACACCACCCGCCGTGCATAGTAGAACCAACATGGCCATGGCGCCATCCGCGCGAGTGT
CGCTGATGCTCGCCGTGGTGCTCGCGTGCGCGCTGCTCGCC------------------A---CCGGCGGCCTCGTGTGC
AATCCGCTCCAGGACAAGACGTGCAAGCCGGGGGACCCCAAGGCGCCCGAGAACACGGAGGAGGGGGGCGGGTTCGGCGC
GAGGCTGTCATCGCCGCCCATTCCGGGCCACGGTATGATCGACGGAGACATCGACGACGAGTTGCCGTCGTTCAGCACCC
ACAAGACCATCCTCGGCCACTGGGAGGATCCGGTGCTCGAAGTCTGACATCTAAGTGCATGCTTGTGTCTTCTTGCATTC
CCATTGCTTGTGTAGTTGTGTTGTTGTCCGGAAGAAAGAATGGGACAAAG--------GAAGAGATGAGAGAGTGAGCGT
GTCACGATAATCGATCCACGCTAGCTGATGACTAAATTTGCCAGTTGTCCCTGTTAATATCGTGGACATTCAGGAAGAAG
CTATAGTTTCTAGTAATCGATTTGGCCTAGTTTTGGTCTTCCTATTGTTGGCCTTGTGATTTTTGGAGTGGGAGTTACCG
ACTCACTGTTTCGCCTTGGTCCTTCATTTCTTCAGTTTTATTTTGTTTCCTTTTAGC-TTTTACTTGG-TTTTTCTTTTT
TACTTTTTTATTCAACACATGTCTATGTTTTTTTCAAACACGTAGCTTTTTGTATACATCAAGAACAAATTTTTGTATAT
GTTTAATATTTTTTGAATACGCGCTTAACGTTATTTTAGAATAAATGTTTTGATGTCTACTCCTATTTTCAACACAAGTC
TATATTTTCATACATATCGTACATTTCTTATATACGTCAAGAACATGTTTTTATACTTC-AAAAGGTTCAAGTGCATAAA
TAGAATGCTTGTTTACATATATGTATTGATGTATTTTCATACACATTATACAATTTCCGTAAACATAAGGAGCATTTTTT
AAGGATATGACTAACATTTTTTAAGAACATGA--------TGTTTTGATTTCTACCT-TTTTCATATATATTATACATTT
TTCGTTTACATATGAAAAATATAC-------------------------------ACATTATTTAAGTATATGTTTTGTT
GTCTAATCTGT--------TTATACATATTTTGTATATACGTGAAACA-TTTTTATACATGTTTAGCTTTCTTTCTTCAT
ATAAATGATTAAAAAGTTTCAAACACATATTTTTTTTACATTTTCTGAATGCTATCGATATTTATTAATTGTAATAAACT
TTTAAAAATGTTATTGATATTTTTAAAAGTTATGCAATGATATTTTTAATGTACGTCAACATATTTTAGACGTTCTATGA
ACATTTTTAAAATTAAAGTATGTTTTTCAGAAAT--------ATAAATAATAGAAAAG-------AAAAG---AAAAAAT
GAACAATGGGATAAATGTAAAGAAGTACAACACGAGGAACTACCTAGGTCGGCCCACATATTTGGACATTGTTGAAATAC
ATGTGCAAAATGTAAAATGTGTATGAAAAAAGTGCTTGAGATGCATATGAAAAATGTGTATGAAAAAAATGGTTGAGATG
CAT-------ATGTAAAATGTGTATGAATAAAATAGTAGACATCAAAGCATATGTTT-GGAAAATTGTTAATCATGTAGT
TTAAA----AATATTAAACTTGTATAAATCAATGTTGCTGATGTATAT-GAAAGATTTACAACCTGTTTATAATAAATAG
AAGTATAGAAAACAAAGAATACCGGTAAAAAACAAAGAAAATGAAAAACGCAGAAAAAACCAATC---------------
AAACTTGGACAAAAATAAGAAAATGTAATACCGAGAAAACT-GAAAAAAGAACTGGCAATGAAATGTAGAACACCG--AA
AAAAAACTTCAAGAAAAAAACCACACATAAGAACCCCACCAGCAGGAACCCATATTGGCCCGGCCAGTAACTGCGGAAAG
CTTTCAGGCGAGACGGAAGGTACCATCGCAGTAAGCGATATATAGCCCTGGCGGACAAACATTGACCTATATGACAC-TC
AAAAAAAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>SNPs
--------S-S--S----S---------------S-----------------------------------S---------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------S-----------------
-----------S-------------------------------S-----S------------------------------
------------------------------------------------------S-------------------------
-------------------------S---------------------------------S-S--------------S---
-----------------------------S-------S---------------------S--------------------
S----------------------------------S--S-----------------SS----------------------
-------------S-S-----------------SS--S-S-----S-----S----S----S------------------
---SS-SS-S-SS----------------------------S---------S-----S-----S----------------
---S-----------S------S-------------------------------------------S-------------
----------------------------S-------------------------------S-------------------
--S----------------------------------------S---------------------------S--------
--S--------------------------------------------------S--------------------------
------------------------------------------------SS-----S--SSSSS------------S----
-------------------------------S---------------------------------S--------------
---------------------------------------------S----------------------------------
-------------------------------------------------------------------------S------
--S---S-S-----------S-----S----------SS-----------SSSSSSSS----------------------
-----------------------------------------------------------------------S--------
--S-------------S----S----------------------S--------------------S--------------
----------------------------------S--------SS-----------------------S-----------
---------------------------------------S----------------------------------------
---------------------S-S------------------------------S----------S--------------
-S--------------------------------------------------------SS-----------S--------
---------------------------------------------S--S-----------S----S--------------
----------SS--SS------------S--------S-------------------S----------------------
-------------------S-------------S-----S-------S--------------------------------
-------------S-----------------SS-------S-S---S------------S-------------------S
---------------------S-------------S---------------------------------------S----
----S-----S------------------------S-----------------------S-----------S-S------
SSS----S---------------------S-----------------S----S---SSSSSSSSS---------------
---------------SS--------------------------------S------------------------------
-------------------------------SSS-----S-------------------S-------S--------S---
---SSSSSSS-----------------------------------------------------S--------S----S--
------------------------S-----------------------S-----------------S-------------
-------S--------------SS-----S----------------S--S------------S-----------------
--------------------------S-S---S------------------S-SS----------S-----S---S----
-----SSSS-----------S-----------S---S-------------------------------------------
-S------------------S-----------------------------------------------------------
-----------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_561
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GTGTGCTAGCTTGACGAGG
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_1666
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CAGTGGGAGGTACCG
ACTCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>forward_823
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTTGGCGTCCTAACATGCGT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_2610
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGGCCCAAATATTTGAACATTGT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
