Multiple sequence alignment - TraesCS3B01G017400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G017400 chr3B 100.000 2639 0 0 1 2639 7188052 7185414 0.000000e+00 4874.0
1 TraesCS3B01G017400 chr3B 92.857 42 2 1 2033 2074 7267022 7266982 2.840000e-05 60.2
2 TraesCS3B01G017400 chr3D 87.005 1262 67 41 551 1766 6337326 6338536 0.000000e+00 1332.0
3 TraesCS3B01G017400 chr3D 84.333 300 31 11 49 338 6336816 6337109 2.000000e-71 279.0
4 TraesCS3B01G017400 chr3D 81.579 266 21 10 2402 2639 6339200 6339465 7.450000e-46 195.0
5 TraesCS3B01G017400 chr3D 84.615 104 14 2 2025 2128 6307101 6307202 4.650000e-18 102.0
6 TraesCS3B01G017400 chr3D 88.889 54 6 0 1803 1856 6306314 6306367 1.700000e-07 67.6
7 TraesCS3B01G017400 chr3A 89.396 811 43 20 962 1766 14044782 14044009 0.000000e+00 981.0
8 TraesCS3B01G017400 chr3A 85.896 865 44 34 49 849 14045760 14044910 0.000000e+00 850.0
9 TraesCS3B01G017400 chr3A 94.915 177 9 0 2165 2341 14042826 14042650 7.190000e-71 278.0
10 TraesCS3B01G017400 chr3A 94.340 53 3 0 1875 1927 14043522 14043470 6.050000e-12 82.4
11 TraesCS3B01G017400 chr2B 89.560 364 26 2 998 1361 178338313 178338664 4.010000e-123 451.0
12 TraesCS3B01G017400 chr2B 88.396 293 34 0 1072 1364 541687086 541687378 1.160000e-93 353.0
13 TraesCS3B01G017400 chr2B 92.982 57 2 1 1925 1979 761990774 761990718 6.050000e-12 82.4
14 TraesCS3B01G017400 chr2D 89.011 364 28 2 998 1361 125324414 125324765 8.670000e-120 440.0
15 TraesCS3B01G017400 chr2D 88.737 293 33 0 1072 1364 460648989 460649281 2.500000e-95 359.0
16 TraesCS3B01G017400 chr2D 93.103 58 2 1 1925 1980 582301430 582301487 1.680000e-12 84.2
17 TraesCS3B01G017400 chr2A 88.187 364 31 2 998 1361 131682809 131683160 8.730000e-115 424.0
18 TraesCS3B01G017400 chr2A 89.078 293 32 0 1072 1364 603523791 603524083 5.370000e-97 364.0
19 TraesCS3B01G017400 chr1D 88.068 176 16 5 1042 1213 385812581 385812407 1.240000e-48 204.0
20 TraesCS3B01G017400 chr1D 86.957 115 15 0 1213 1327 476558359 476558473 2.130000e-26 130.0
21 TraesCS3B01G017400 chr1D 94.643 56 2 1 1925 1979 65902503 65902448 4.680000e-13 86.1
22 TraesCS3B01G017400 chr1D 94.643 56 2 1 1925 1979 65902448 65902503 4.680000e-13 86.1
23 TraesCS3B01G017400 chr7D 92.857 56 3 1 1925 1979 5659994 5659939 2.180000e-11 80.5
24 TraesCS3B01G017400 chr7D 91.379 58 3 2 1924 1979 92761889 92761946 7.830000e-11 78.7
25 TraesCS3B01G017400 chr7A 88.406 69 4 3 1919 1987 21612571 21612635 2.180000e-11 80.5
26 TraesCS3B01G017400 chr4A 92.857 56 3 1 1925 1979 448518118 448518173 2.180000e-11 80.5
27 TraesCS3B01G017400 chr5D 88.060 67 3 5 1925 1988 489730870 489730806 1.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G017400 chr3B 7185414 7188052 2638 True 4874.00 4874 100.000000 1 2639 1 chr3B.!!$R1 2638
1 TraesCS3B01G017400 chr3D 6336816 6339465 2649 False 602.00 1332 84.305667 49 2639 3 chr3D.!!$F2 2590
2 TraesCS3B01G017400 chr3A 14042650 14045760 3110 True 547.85 981 91.136750 49 2341 4 chr3A.!!$R1 2292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 451 0.105039 ATGGTCGAGCGGAAGATTCC 59.895 55.0 10.46 1.23 44.05 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 2068 0.252881 TCATGGAGAGCTTCCCAGGT 60.253 55.0 16.15 0.0 46.19 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.878953 GGAAAGGCAGAAGTTGACGA 58.121 50.000 0.00 0.00 40.94 4.20
20 21 1.531578 GGAAAGGCAGAAGTTGACGAC 59.468 52.381 0.00 0.00 40.94 4.34
21 22 2.210116 GAAAGGCAGAAGTTGACGACA 58.790 47.619 0.00 0.00 40.94 4.35
22 23 1.583054 AAGGCAGAAGTTGACGACAC 58.417 50.000 0.00 0.00 40.94 3.67
23 24 0.597637 AGGCAGAAGTTGACGACACG 60.598 55.000 0.00 0.00 40.94 4.49
24 25 0.596600 GGCAGAAGTTGACGACACGA 60.597 55.000 0.00 0.00 0.00 4.35
25 26 0.778815 GCAGAAGTTGACGACACGAG 59.221 55.000 0.00 0.00 0.00 4.18
26 27 1.409412 CAGAAGTTGACGACACGAGG 58.591 55.000 0.00 0.00 0.00 4.63
27 28 1.001706 CAGAAGTTGACGACACGAGGA 60.002 52.381 0.00 0.00 0.00 3.71
28 29 1.679680 AGAAGTTGACGACACGAGGAA 59.320 47.619 0.00 0.00 0.00 3.36
29 30 2.052157 GAAGTTGACGACACGAGGAAG 58.948 52.381 0.00 0.00 0.00 3.46
30 31 1.315690 AGTTGACGACACGAGGAAGA 58.684 50.000 0.00 0.00 0.00 2.87
31 32 1.679680 AGTTGACGACACGAGGAAGAA 59.320 47.619 0.00 0.00 0.00 2.52
32 33 2.100252 AGTTGACGACACGAGGAAGAAA 59.900 45.455 0.00 0.00 0.00 2.52
33 34 2.417339 TGACGACACGAGGAAGAAAG 57.583 50.000 0.00 0.00 0.00 2.62
34 35 1.000607 TGACGACACGAGGAAGAAAGG 60.001 52.381 0.00 0.00 0.00 3.11
35 36 1.268899 GACGACACGAGGAAGAAAGGA 59.731 52.381 0.00 0.00 0.00 3.36
36 37 1.684983 ACGACACGAGGAAGAAAGGAA 59.315 47.619 0.00 0.00 0.00 3.36
37 38 2.101917 ACGACACGAGGAAGAAAGGAAA 59.898 45.455 0.00 0.00 0.00 3.13
38 39 2.475487 CGACACGAGGAAGAAAGGAAAC 59.525 50.000 0.00 0.00 0.00 2.78
39 40 3.463944 GACACGAGGAAGAAAGGAAACA 58.536 45.455 0.00 0.00 0.00 2.83
40 41 3.467803 ACACGAGGAAGAAAGGAAACAG 58.532 45.455 0.00 0.00 0.00 3.16
41 42 3.118371 ACACGAGGAAGAAAGGAAACAGT 60.118 43.478 0.00 0.00 0.00 3.55
42 43 3.248602 CACGAGGAAGAAAGGAAACAGTG 59.751 47.826 0.00 0.00 0.00 3.66
43 44 3.134081 ACGAGGAAGAAAGGAAACAGTGA 59.866 43.478 0.00 0.00 0.00 3.41
44 45 4.202367 ACGAGGAAGAAAGGAAACAGTGAT 60.202 41.667 0.00 0.00 0.00 3.06
45 46 4.153117 CGAGGAAGAAAGGAAACAGTGATG 59.847 45.833 0.00 0.00 0.00 3.07
46 47 4.401925 AGGAAGAAAGGAAACAGTGATGG 58.598 43.478 0.00 0.00 0.00 3.51
47 48 4.141158 AGGAAGAAAGGAAACAGTGATGGT 60.141 41.667 0.00 0.00 0.00 3.55
51 52 5.906073 AGAAAGGAAACAGTGATGGTTTTG 58.094 37.500 0.00 0.00 38.50 2.44
75 76 0.453390 GGATTGCGAGGCTGAAAAGG 59.547 55.000 0.00 0.00 0.00 3.11
86 87 2.463876 GCTGAAAAGGTTGTGCAGAAC 58.536 47.619 17.97 17.97 0.00 3.01
117 118 4.379813 GCGATGGTGGCATAGAAATATTGG 60.380 45.833 0.00 0.00 0.00 3.16
139 140 3.127721 GGAGATGGTAAAGCTGAAACTGC 59.872 47.826 0.00 0.00 0.00 4.40
189 208 2.162408 GGTTCTGGAGAAAAAGATGGCG 59.838 50.000 0.00 0.00 35.58 5.69
212 231 0.392729 CTGAAGAAGGCAGGGCTGAG 60.393 60.000 0.00 0.00 0.00 3.35
215 234 0.998145 AAGAAGGCAGGGCTGAGAAT 59.002 50.000 0.00 0.00 0.00 2.40
312 331 4.786425 AGATGTCAAATCTAAGGAAGCCC 58.214 43.478 0.00 0.00 0.00 5.19
338 357 2.840651 CAATTAGATCGCCCTATCCCCT 59.159 50.000 0.00 0.00 0.00 4.79
383 402 5.425196 AAACAAAATAGATGCCAGGCAAT 57.575 34.783 20.84 13.17 43.62 3.56
401 420 4.752101 GGCAATATGATTACTGAAGCGAGT 59.248 41.667 0.00 0.00 0.00 4.18
432 451 0.105039 ATGGTCGAGCGGAAGATTCC 59.895 55.000 10.46 1.23 44.05 3.01
463 491 4.520492 CCAAAACTGATGTAGGTTGAAGCT 59.480 41.667 1.39 1.39 36.16 3.74
464 492 5.455392 CAAAACTGATGTAGGTTGAAGCTG 58.545 41.667 7.22 0.00 36.16 4.24
469 497 4.905429 TGATGTAGGTTGAAGCTGCTTTA 58.095 39.130 17.10 9.82 0.00 1.85
495 523 3.684788 ACGATGTGAAAACTGATGTAGGC 59.315 43.478 0.00 0.00 0.00 3.93
580 681 3.314541 TCGACCTTCCTTGTTTAGCTC 57.685 47.619 0.00 0.00 0.00 4.09
702 818 1.741706 GATTGGTCTGACATGGCAGTG 59.258 52.381 27.68 4.78 37.20 3.66
715 831 1.626654 GGCAGTGATCGACGGTTGTG 61.627 60.000 0.00 0.00 0.00 3.33
716 832 1.626654 GCAGTGATCGACGGTTGTGG 61.627 60.000 0.00 0.00 0.00 4.17
746 862 1.368641 GTGGCACATGCTTATCGACA 58.631 50.000 13.86 0.00 44.52 4.35
861 1015 2.107366 CCTCTCCCTCCTCTTCTTGTC 58.893 57.143 0.00 0.00 0.00 3.18
873 1027 2.068519 CTTCTTGTCGCACTGCACATA 58.931 47.619 1.11 0.00 0.00 2.29
875 1029 2.698803 TCTTGTCGCACTGCACATAAT 58.301 42.857 1.11 0.00 0.00 1.28
876 1030 3.855858 TCTTGTCGCACTGCACATAATA 58.144 40.909 1.11 0.00 0.00 0.98
877 1031 3.865164 TCTTGTCGCACTGCACATAATAG 59.135 43.478 1.11 0.60 0.00 1.73
886 1040 5.220739 GCACTGCACATAATAGTCTCCAAAG 60.221 44.000 0.00 0.00 0.00 2.77
892 1046 7.828717 TGCACATAATAGTCTCCAAAGATTGAA 59.171 33.333 0.00 0.00 33.08 2.69
924 1085 4.353383 AGTGTCCTTCCTTCCAGTTAAC 57.647 45.455 0.00 0.00 0.00 2.01
930 1091 5.412904 GTCCTTCCTTCCAGTTAACTTCATG 59.587 44.000 5.07 0.00 0.00 3.07
931 1092 4.156739 CCTTCCTTCCAGTTAACTTCATGC 59.843 45.833 5.07 0.00 0.00 4.06
932 1093 4.640771 TCCTTCCAGTTAACTTCATGCT 57.359 40.909 5.07 0.00 0.00 3.79
933 1094 4.579869 TCCTTCCAGTTAACTTCATGCTC 58.420 43.478 5.07 0.00 0.00 4.26
934 1095 3.691609 CCTTCCAGTTAACTTCATGCTCC 59.308 47.826 5.07 0.00 0.00 4.70
988 1160 4.498241 TCTTGATTTGAGACACAGATCGG 58.502 43.478 0.00 0.00 41.25 4.18
1104 1277 3.803082 CTGCCCATCGCCAACGTG 61.803 66.667 0.00 0.00 41.18 4.49
1311 1484 3.507290 GAGGACTACGTCGACCCC 58.493 66.667 10.58 3.88 32.65 4.95
1404 1589 2.360350 CAGCACCTGCCCGACAAT 60.360 61.111 0.00 0.00 43.38 2.71
1432 1617 2.967740 GGTTACGCCGACTATGGTG 58.032 57.895 0.00 0.00 45.20 4.17
1433 1618 0.529119 GGTTACGCCGACTATGGTGG 60.529 60.000 0.00 0.00 43.96 4.61
1434 1619 1.142314 TTACGCCGACTATGGTGGC 59.858 57.895 11.07 11.07 43.96 5.01
1440 1625 4.530857 GACTATGGTGGCGCCGCT 62.531 66.667 36.63 22.37 41.21 5.52
1441 1626 4.838152 ACTATGGTGGCGCCGCTG 62.838 66.667 36.63 25.17 41.21 5.18
1442 1627 4.838152 CTATGGTGGCGCCGCTGT 62.838 66.667 36.63 26.83 41.21 4.40
1443 1628 4.830765 TATGGTGGCGCCGCTGTC 62.831 66.667 36.63 22.23 41.21 3.51
1499 1684 2.513897 GCCCATGTACGGCTCACC 60.514 66.667 4.37 0.00 43.48 4.02
1540 1725 1.880894 CAGCAGCACCAACATCAGG 59.119 57.895 0.00 0.00 0.00 3.86
1582 1767 0.830648 CTTTCCCTATCACGGAGGCA 59.169 55.000 0.00 0.00 32.18 4.75
1585 1770 2.434843 CCCTATCACGGAGGCAGCA 61.435 63.158 0.00 0.00 32.18 4.41
1587 1772 1.593750 CTATCACGGAGGCAGCAGC 60.594 63.158 0.00 0.00 41.10 5.25
1624 1809 1.252904 TTCTTCGTCGGGGTTCGGAT 61.253 55.000 0.00 0.00 39.77 4.18
1655 1847 5.302823 AGGGGTGACATCTTTTCTTTTCTTG 59.697 40.000 0.00 0.00 0.00 3.02
1656 1848 5.069119 GGGGTGACATCTTTTCTTTTCTTGT 59.931 40.000 0.00 0.00 0.00 3.16
1657 1849 6.209361 GGGTGACATCTTTTCTTTTCTTGTC 58.791 40.000 0.00 0.00 34.16 3.18
1658 1850 5.909610 GGTGACATCTTTTCTTTTCTTGTCG 59.090 40.000 0.00 0.00 35.84 4.35
1659 1851 6.458342 GGTGACATCTTTTCTTTTCTTGTCGT 60.458 38.462 0.00 0.00 35.84 4.34
1730 1926 2.656560 AGCCGTGACTTGTAGCTTAG 57.343 50.000 0.00 0.00 0.00 2.18
1766 1962 7.685481 TCAGTACAAGGAGGAATAATTGTTCA 58.315 34.615 15.72 0.00 37.15 3.18
1783 2026 7.704789 ATTGTTCAGCAAATCAGTTTTCTTC 57.295 32.000 0.00 0.00 40.91 2.87
1787 2030 9.283768 TGTTCAGCAAATCAGTTTTCTTCTATA 57.716 29.630 0.00 0.00 0.00 1.31
1791 2034 9.897744 CAGCAAATCAGTTTTCTTCTATAAACA 57.102 29.630 0.00 0.00 36.85 2.83
1798 2041 8.656806 TCAGTTTTCTTCTATAAACAGGAGGAA 58.343 33.333 0.00 0.00 36.85 3.36
1800 2043 9.454859 AGTTTTCTTCTATAAACAGGAGGAATG 57.545 33.333 0.00 0.00 36.85 2.67
1801 2044 9.232473 GTTTTCTTCTATAAACAGGAGGAATGT 57.768 33.333 0.00 0.00 35.02 2.71
1813 2056 6.127793 ACAGGAGGAATGTATAACTACGAGT 58.872 40.000 0.00 0.00 0.00 4.18
1814 2057 6.262720 ACAGGAGGAATGTATAACTACGAGTC 59.737 42.308 0.00 0.00 0.00 3.36
1816 2059 7.660617 CAGGAGGAATGTATAACTACGAGTCTA 59.339 40.741 0.00 0.00 0.00 2.59
1817 2060 7.661027 AGGAGGAATGTATAACTACGAGTCTAC 59.339 40.741 0.00 0.00 0.00 2.59
1818 2061 7.443575 GGAGGAATGTATAACTACGAGTCTACA 59.556 40.741 0.00 1.75 33.60 2.74
1819 2062 8.743085 AGGAATGTATAACTACGAGTCTACAA 57.257 34.615 0.00 0.00 33.15 2.41
1820 2063 9.182214 AGGAATGTATAACTACGAGTCTACAAA 57.818 33.333 0.00 0.00 33.15 2.83
1821 2064 9.962783 GGAATGTATAACTACGAGTCTACAAAT 57.037 33.333 0.00 0.00 33.15 2.32
1828 2071 7.642082 AACTACGAGTCTACAAATCATACCT 57.358 36.000 0.00 0.00 0.00 3.08
1830 2073 5.263968 ACGAGTCTACAAATCATACCTGG 57.736 43.478 0.00 0.00 0.00 4.45
1832 2075 4.341235 CGAGTCTACAAATCATACCTGGGA 59.659 45.833 0.00 0.00 0.00 4.37
1833 2076 5.163447 CGAGTCTACAAATCATACCTGGGAA 60.163 44.000 0.00 0.00 0.00 3.97
1834 2077 6.240549 AGTCTACAAATCATACCTGGGAAG 57.759 41.667 0.00 0.00 0.00 3.46
1835 2078 4.816925 GTCTACAAATCATACCTGGGAAGC 59.183 45.833 0.00 0.00 0.00 3.86
1836 2079 4.721776 TCTACAAATCATACCTGGGAAGCT 59.278 41.667 0.00 0.00 0.00 3.74
1837 2080 3.891049 ACAAATCATACCTGGGAAGCTC 58.109 45.455 0.00 0.00 0.00 4.09
1838 2081 3.525199 ACAAATCATACCTGGGAAGCTCT 59.475 43.478 0.00 0.00 0.00 4.09
1840 2083 1.794714 TCATACCTGGGAAGCTCTCC 58.205 55.000 0.00 6.43 44.54 3.71
1852 2095 5.747951 GGAAGCTCTCCATGAATTACTTG 57.252 43.478 9.31 0.00 44.67 3.16
1853 2096 5.189180 GGAAGCTCTCCATGAATTACTTGT 58.811 41.667 9.31 0.00 44.67 3.16
1854 2097 5.649831 GGAAGCTCTCCATGAATTACTTGTT 59.350 40.000 9.31 0.00 44.67 2.83
1855 2098 6.151817 GGAAGCTCTCCATGAATTACTTGTTT 59.848 38.462 9.31 0.00 44.67 2.83
1858 2101 8.045176 AGCTCTCCATGAATTACTTGTTTAAC 57.955 34.615 0.00 0.00 0.00 2.01
1859 2102 7.665559 AGCTCTCCATGAATTACTTGTTTAACA 59.334 33.333 0.00 0.00 0.00 2.41
1860 2103 8.296713 GCTCTCCATGAATTACTTGTTTAACAA 58.703 33.333 10.26 10.26 36.54 2.83
1861 2104 9.612620 CTCTCCATGAATTACTTGTTTAACAAC 57.387 33.333 6.41 0.00 33.96 3.32
1862 2105 9.126151 TCTCCATGAATTACTTGTTTAACAACA 57.874 29.630 6.41 2.97 41.39 3.33
1864 2107 9.689976 TCCATGAATTACTTGTTTAACAACATG 57.310 29.630 20.31 20.31 42.66 3.21
1866 2109 7.938563 TGAATTACTTGTTTAACAACATGGC 57.061 32.000 6.41 0.00 42.66 4.40
1870 2113 3.880490 ACTTGTTTAACAACATGGCGAGA 59.120 39.130 6.41 0.00 42.66 4.04
1873 2116 3.002862 TGTTTAACAACATGGCGAGACAC 59.997 43.478 0.00 0.00 38.03 3.67
1917 2508 4.779993 AAGAACTCATGATAGGAACCCC 57.220 45.455 0.00 0.00 0.00 4.95
1932 2523 3.217743 CCCGCGACCTACTCCCTC 61.218 72.222 8.23 0.00 0.00 4.30
1936 2527 2.479750 GCGACCTACTCCCTCCGTC 61.480 68.421 0.00 0.00 0.00 4.79
1938 2529 1.455402 GACCTACTCCCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
1939 2530 2.220786 GACCTACTCCCTCCGTCCCA 62.221 65.000 0.00 0.00 0.00 4.37
1940 2531 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
1942 2533 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
1945 2536 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1946 2537 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1947 2538 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1949 2540 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1950 2541 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1951 2542 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1952 2543 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1953 2544 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1954 2545 4.157289 TCCGTCCCATAATATAAGAGCGTC 59.843 45.833 0.00 0.00 0.00 5.19
1956 2547 4.379186 CGTCCCATAATATAAGAGCGTCGT 60.379 45.833 0.00 0.00 0.00 4.34
1959 2550 7.254556 CGTCCCATAATATAAGAGCGTCGTATA 60.255 40.741 0.00 4.27 30.24 1.47
1960 2551 8.566260 GTCCCATAATATAAGAGCGTCGTATAT 58.434 37.037 0.00 7.25 36.19 0.86
1961 2552 9.128404 TCCCATAATATAAGAGCGTCGTATATT 57.872 33.333 19.24 19.24 42.43 1.28
1967 2558 8.687292 ATATAAGAGCGTCGTATATTATGGGA 57.313 34.615 8.70 0.00 32.63 4.37
1981 2624 0.647738 ATGGGATGGAGGGAGTACCA 59.352 55.000 0.00 0.00 43.89 3.25
1982 2625 0.419865 TGGGATGGAGGGAGTACCAA 59.580 55.000 0.00 0.00 43.89 3.67
2013 2656 7.286775 ACTTTGGTAAGCTACAAATGGAAAAGA 59.713 33.333 10.40 0.00 36.16 2.52
2014 2657 6.817765 TGGTAAGCTACAAATGGAAAAGAG 57.182 37.500 0.00 0.00 0.00 2.85
2015 2658 6.539173 TGGTAAGCTACAAATGGAAAAGAGA 58.461 36.000 0.00 0.00 0.00 3.10
2016 2659 6.655003 TGGTAAGCTACAAATGGAAAAGAGAG 59.345 38.462 0.00 0.00 0.00 3.20
2017 2660 6.094186 GGTAAGCTACAAATGGAAAAGAGAGG 59.906 42.308 0.00 0.00 0.00 3.69
2019 2662 5.006386 AGCTACAAATGGAAAAGAGAGGTG 58.994 41.667 0.00 0.00 0.00 4.00
2022 2665 5.774498 ACAAATGGAAAAGAGAGGTGAAC 57.226 39.130 0.00 0.00 0.00 3.18
2023 2666 5.449553 ACAAATGGAAAAGAGAGGTGAACT 58.550 37.500 0.00 0.00 0.00 3.01
2024 2667 5.532779 ACAAATGGAAAAGAGAGGTGAACTC 59.467 40.000 0.00 0.00 46.98 3.01
2036 2679 2.037772 AGGTGAACTCTTTGCATCGAGT 59.962 45.455 11.41 11.41 41.97 4.18
2042 2685 2.668457 ACTCTTTGCATCGAGTTAAGCG 59.332 45.455 11.41 0.00 37.19 4.68
2044 2687 0.446222 TTTGCATCGAGTTAAGCGGC 59.554 50.000 0.00 0.00 0.00 6.53
2046 2689 0.806102 TGCATCGAGTTAAGCGGCTC 60.806 55.000 1.45 0.00 0.00 4.70
2048 2691 1.203928 CATCGAGTTAAGCGGCTCTG 58.796 55.000 1.45 0.00 0.00 3.35
2050 2693 0.601558 TCGAGTTAAGCGGCTCTGTT 59.398 50.000 1.45 0.00 0.00 3.16
2051 2694 1.000506 TCGAGTTAAGCGGCTCTGTTT 59.999 47.619 1.45 0.00 0.00 2.83
2052 2695 1.390463 CGAGTTAAGCGGCTCTGTTTC 59.610 52.381 1.45 0.00 0.00 2.78
2054 2697 1.145803 GTTAAGCGGCTCTGTTTCGT 58.854 50.000 1.45 0.00 0.00 3.85
2055 2698 1.126296 GTTAAGCGGCTCTGTTTCGTC 59.874 52.381 1.45 0.00 0.00 4.20
2056 2699 0.389426 TAAGCGGCTCTGTTTCGTCC 60.389 55.000 1.45 0.00 0.00 4.79
2058 2701 1.214589 GCGGCTCTGTTTCGTCCTA 59.785 57.895 0.00 0.00 0.00 2.94
2059 2702 0.802607 GCGGCTCTGTTTCGTCCTAG 60.803 60.000 0.00 0.00 0.00 3.02
2061 2704 1.467713 CGGCTCTGTTTCGTCCTAGAC 60.468 57.143 0.00 0.00 0.00 2.59
2062 2705 1.544691 GGCTCTGTTTCGTCCTAGACA 59.455 52.381 0.00 0.00 32.09 3.41
2065 2708 3.129638 GCTCTGTTTCGTCCTAGACATCT 59.870 47.826 0.00 0.00 32.09 2.90
2066 2709 4.732355 GCTCTGTTTCGTCCTAGACATCTC 60.732 50.000 0.00 0.00 32.09 2.75
2067 2710 4.332828 TCTGTTTCGTCCTAGACATCTCA 58.667 43.478 0.00 0.00 32.09 3.27
2070 2713 5.849510 TGTTTCGTCCTAGACATCTCAAAA 58.150 37.500 0.00 0.00 32.09 2.44
2072 2715 5.977489 TTCGTCCTAGACATCTCAAAAGA 57.023 39.130 0.00 0.00 35.54 2.52
2073 2716 5.568685 TCGTCCTAGACATCTCAAAAGAG 57.431 43.478 0.00 0.00 34.24 2.85
2075 2718 4.142271 CGTCCTAGACATCTCAAAAGAGCT 60.142 45.833 0.00 0.00 34.24 4.09
2076 2719 5.623368 CGTCCTAGACATCTCAAAAGAGCTT 60.623 44.000 0.00 0.00 34.24 3.74
2083 2726 4.518211 ACATCTCAAAAGAGCTTTGGTCTG 59.482 41.667 0.00 0.00 44.00 3.51
2084 2727 2.880890 TCTCAAAAGAGCTTTGGTCTGC 59.119 45.455 0.00 0.00 44.00 4.26
2085 2728 1.956477 TCAAAAGAGCTTTGGTCTGCC 59.044 47.619 0.00 0.00 44.00 4.85
2086 2729 1.959282 CAAAAGAGCTTTGGTCTGCCT 59.041 47.619 0.00 0.00 39.62 4.75
2087 2730 3.149196 CAAAAGAGCTTTGGTCTGCCTA 58.851 45.455 0.00 0.00 39.62 3.93
2088 2731 3.728385 AAAGAGCTTTGGTCTGCCTAT 57.272 42.857 0.00 0.00 39.62 2.57
2089 2732 2.706339 AGAGCTTTGGTCTGCCTATG 57.294 50.000 0.00 0.00 39.04 2.23
2090 2733 1.211457 AGAGCTTTGGTCTGCCTATGG 59.789 52.381 0.00 0.00 39.04 2.74
2102 2745 1.027357 GCCTATGGCCACTGTTGATG 58.973 55.000 8.16 0.00 44.06 3.07
2103 2746 1.027357 CCTATGGCCACTGTTGATGC 58.973 55.000 8.16 0.00 0.00 3.91
2104 2747 1.027357 CTATGGCCACTGTTGATGCC 58.973 55.000 8.16 0.00 44.27 4.40
2105 2748 0.625316 TATGGCCACTGTTGATGCCT 59.375 50.000 8.16 0.00 44.32 4.75
2107 2750 0.403655 TGGCCACTGTTGATGCCTTA 59.596 50.000 0.00 0.00 44.32 2.69
2109 2752 0.447801 GCCACTGTTGATGCCTTACG 59.552 55.000 0.00 0.00 0.00 3.18
2110 2753 1.808411 CCACTGTTGATGCCTTACGT 58.192 50.000 0.00 0.00 0.00 3.57
2111 2754 2.151202 CCACTGTTGATGCCTTACGTT 58.849 47.619 0.00 0.00 0.00 3.99
2112 2755 2.159627 CCACTGTTGATGCCTTACGTTC 59.840 50.000 0.00 0.00 0.00 3.95
2113 2756 3.067106 CACTGTTGATGCCTTACGTTCT 58.933 45.455 0.00 0.00 0.00 3.01
2114 2757 3.498397 CACTGTTGATGCCTTACGTTCTT 59.502 43.478 0.00 0.00 0.00 2.52
2115 2758 3.498397 ACTGTTGATGCCTTACGTTCTTG 59.502 43.478 0.00 0.00 0.00 3.02
2116 2759 3.472652 TGTTGATGCCTTACGTTCTTGT 58.527 40.909 0.00 0.00 0.00 3.16
2117 2760 3.249799 TGTTGATGCCTTACGTTCTTGTG 59.750 43.478 0.00 0.00 0.00 3.33
2118 2761 3.120321 TGATGCCTTACGTTCTTGTGT 57.880 42.857 0.00 0.00 0.00 3.72
2119 2762 4.260139 TGATGCCTTACGTTCTTGTGTA 57.740 40.909 0.00 0.00 0.00 2.90
2120 2763 3.991773 TGATGCCTTACGTTCTTGTGTAC 59.008 43.478 0.00 0.00 0.00 2.90
2122 2765 3.386486 TGCCTTACGTTCTTGTGTACTG 58.614 45.455 0.00 0.00 0.00 2.74
2123 2766 2.735134 GCCTTACGTTCTTGTGTACTGG 59.265 50.000 0.00 0.00 0.00 4.00
2124 2767 3.553508 GCCTTACGTTCTTGTGTACTGGA 60.554 47.826 0.00 0.00 0.00 3.86
2125 2768 4.817517 CCTTACGTTCTTGTGTACTGGAT 58.182 43.478 0.00 0.00 0.00 3.41
2126 2769 4.863131 CCTTACGTTCTTGTGTACTGGATC 59.137 45.833 0.00 0.00 0.00 3.36
2128 2771 4.175787 ACGTTCTTGTGTACTGGATCTC 57.824 45.455 0.00 0.00 0.00 2.75
2129 2772 3.572682 ACGTTCTTGTGTACTGGATCTCA 59.427 43.478 0.00 0.00 0.00 3.27
2130 2773 3.921021 CGTTCTTGTGTACTGGATCTCAC 59.079 47.826 0.00 0.00 0.00 3.51
2131 2774 4.558697 CGTTCTTGTGTACTGGATCTCACA 60.559 45.833 0.00 0.00 38.71 3.58
2133 2776 6.625081 CGTTCTTGTGTACTGGATCTCACATA 60.625 42.308 0.00 0.00 39.86 2.29
2135 2778 5.952347 TCTTGTGTACTGGATCTCACATACT 59.048 40.000 0.00 0.00 39.86 2.12
2138 2781 7.004555 TGTGTACTGGATCTCACATACTTTT 57.995 36.000 0.00 0.00 36.17 2.27
2139 2782 6.873605 TGTGTACTGGATCTCACATACTTTTG 59.126 38.462 0.00 0.00 36.17 2.44
2140 2783 7.097192 GTGTACTGGATCTCACATACTTTTGA 58.903 38.462 0.00 0.00 0.00 2.69
2143 2786 7.856145 ACTGGATCTCACATACTTTTGATTC 57.144 36.000 0.00 0.00 0.00 2.52
2149 2792 7.487822 TCTCACATACTTTTGATTCCTCTCT 57.512 36.000 0.00 0.00 0.00 3.10
2153 2796 9.823647 TCACATACTTTTGATTCCTCTCTAATC 57.176 33.333 0.00 0.00 34.55 1.75
2154 2797 9.050601 CACATACTTTTGATTCCTCTCTAATCC 57.949 37.037 0.00 0.00 33.28 3.01
2155 2798 8.997734 ACATACTTTTGATTCCTCTCTAATCCT 58.002 33.333 0.00 0.00 33.28 3.24
2156 2799 9.487790 CATACTTTTGATTCCTCTCTAATCCTC 57.512 37.037 0.00 0.00 33.28 3.71
2158 2801 8.100135 ACTTTTGATTCCTCTCTAATCCTCAT 57.900 34.615 0.00 0.00 33.28 2.90
2163 2806 8.962912 TGATTCCTCTCTAATCCTCATATTGA 57.037 34.615 0.00 0.00 33.28 2.57
2194 3294 5.126869 TCCTGTTGTCACATGTGTTTTCAAT 59.873 36.000 24.63 0.00 30.39 2.57
2207 3307 6.795399 TGTGTTTTCAATTCTTCAGTTCTCC 58.205 36.000 0.00 0.00 0.00 3.71
2265 3365 5.473931 CCCTGCATCATGTACTACTATGTC 58.526 45.833 0.00 0.00 0.00 3.06
2270 3370 5.406780 GCATCATGTACTACTATGTCAAGCC 59.593 44.000 0.00 0.00 0.00 4.35
2274 3374 4.090819 TGTACTACTATGTCAAGCCACCA 58.909 43.478 0.00 0.00 0.00 4.17
2295 3395 8.387354 CCACCAACAAGTTAAAAGAAATGAAAC 58.613 33.333 0.00 0.00 0.00 2.78
2317 3417 3.973135 CGATTTAACCGGATGTCTACTCG 59.027 47.826 9.46 2.15 0.00 4.18
2334 3434 0.603569 TCGAGTGAAGTTCCAGAGGC 59.396 55.000 0.00 0.00 0.00 4.70
2341 3441 4.018960 AGTGAAGTTCCAGAGGCATGTATT 60.019 41.667 0.00 0.00 0.00 1.89
2342 3442 4.333926 GTGAAGTTCCAGAGGCATGTATTC 59.666 45.833 0.00 0.00 0.00 1.75
2343 3443 3.567478 AGTTCCAGAGGCATGTATTCC 57.433 47.619 0.00 0.00 0.00 3.01
2344 3444 3.118531 AGTTCCAGAGGCATGTATTCCT 58.881 45.455 0.00 0.00 34.90 3.36
2389 3489 7.560796 AAATCCAGAGGTATGTATAAGAGGG 57.439 40.000 0.00 0.00 0.00 4.30
2390 3490 5.011982 TCCAGAGGTATGTATAAGAGGGG 57.988 47.826 0.00 0.00 0.00 4.79
2391 3491 4.673132 TCCAGAGGTATGTATAAGAGGGGA 59.327 45.833 0.00 0.00 0.00 4.81
2392 3492 5.137255 TCCAGAGGTATGTATAAGAGGGGAA 59.863 44.000 0.00 0.00 0.00 3.97
2393 3493 5.482175 CCAGAGGTATGTATAAGAGGGGAAG 59.518 48.000 0.00 0.00 0.00 3.46
2394 3494 6.315714 CAGAGGTATGTATAAGAGGGGAAGA 58.684 44.000 0.00 0.00 0.00 2.87
2395 3495 6.782988 CAGAGGTATGTATAAGAGGGGAAGAA 59.217 42.308 0.00 0.00 0.00 2.52
2396 3496 7.456269 CAGAGGTATGTATAAGAGGGGAAGAAT 59.544 40.741 0.00 0.00 0.00 2.40
2397 3497 8.019652 AGAGGTATGTATAAGAGGGGAAGAATT 58.980 37.037 0.00 0.00 0.00 2.17
2398 3498 9.322769 GAGGTATGTATAAGAGGGGAAGAATTA 57.677 37.037 0.00 0.00 0.00 1.40
2399 3499 9.860393 AGGTATGTATAAGAGGGGAAGAATTAT 57.140 33.333 0.00 0.00 0.00 1.28
2423 3523 0.868406 GCAAGTGAAAGTCGGTGGAG 59.132 55.000 0.00 0.00 0.00 3.86
2424 3524 1.512926 CAAGTGAAAGTCGGTGGAGG 58.487 55.000 0.00 0.00 0.00 4.30
2427 3527 1.550976 AGTGAAAGTCGGTGGAGGATC 59.449 52.381 0.00 0.00 0.00 3.36
2473 3573 9.618890 AATGCTCACAAGTTACAATAGATATGT 57.381 29.630 0.00 0.00 34.81 2.29
2514 3642 4.275936 GCTCAAGACAGCAAGAAAAGGTTA 59.724 41.667 0.00 0.00 39.43 2.85
2538 3666 3.233684 ACGCTAAGCAGTTCCTACTTC 57.766 47.619 0.00 0.00 30.26 3.01
2543 3671 0.896226 AGCAGTTCCTACTTCGACCC 59.104 55.000 0.00 0.00 30.26 4.46
2546 3674 0.896226 AGTTCCTACTTCGACCCTGC 59.104 55.000 0.00 0.00 0.00 4.85
2578 3706 0.247537 CGCGAGTTACCGGCAAATTC 60.248 55.000 0.00 1.61 0.00 2.17
2592 3720 7.750769 ACCGGCAAATTCATAAAATTGAAATG 58.249 30.769 0.00 0.00 38.98 2.32
2617 3745 6.536582 GTCTGCATTTCATTTCTGCTACTCTA 59.463 38.462 0.00 0.00 36.84 2.43
2624 3752 6.798427 TCATTTCTGCTACTCTACCTCATT 57.202 37.500 0.00 0.00 0.00 2.57
2626 3754 7.044181 TCATTTCTGCTACTCTACCTCATTTG 58.956 38.462 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.531578 GTCGTCAACTTCTGCCTTTCC 59.468 52.381 0.00 0.00 0.00 3.13
1 2 2.032808 GTGTCGTCAACTTCTGCCTTTC 60.033 50.000 0.00 0.00 0.00 2.62
2 3 1.940613 GTGTCGTCAACTTCTGCCTTT 59.059 47.619 0.00 0.00 0.00 3.11
4 5 0.597637 CGTGTCGTCAACTTCTGCCT 60.598 55.000 0.00 0.00 0.00 4.75
5 6 0.596600 TCGTGTCGTCAACTTCTGCC 60.597 55.000 0.00 0.00 0.00 4.85
7 8 1.001706 TCCTCGTGTCGTCAACTTCTG 60.002 52.381 0.00 0.00 0.00 3.02
8 9 1.315690 TCCTCGTGTCGTCAACTTCT 58.684 50.000 0.00 0.00 0.00 2.85
9 10 2.052157 CTTCCTCGTGTCGTCAACTTC 58.948 52.381 0.00 0.00 0.00 3.01
10 11 1.679680 TCTTCCTCGTGTCGTCAACTT 59.320 47.619 0.00 0.00 0.00 2.66
11 12 1.315690 TCTTCCTCGTGTCGTCAACT 58.684 50.000 0.00 0.00 0.00 3.16
12 13 2.129823 TTCTTCCTCGTGTCGTCAAC 57.870 50.000 0.00 0.00 0.00 3.18
13 14 2.545113 CCTTTCTTCCTCGTGTCGTCAA 60.545 50.000 0.00 0.00 0.00 3.18
14 15 1.000607 CCTTTCTTCCTCGTGTCGTCA 60.001 52.381 0.00 0.00 0.00 4.35
15 16 1.268899 TCCTTTCTTCCTCGTGTCGTC 59.731 52.381 0.00 0.00 0.00 4.20
16 17 1.325355 TCCTTTCTTCCTCGTGTCGT 58.675 50.000 0.00 0.00 0.00 4.34
17 18 2.433868 TTCCTTTCTTCCTCGTGTCG 57.566 50.000 0.00 0.00 0.00 4.35
18 19 3.463944 TGTTTCCTTTCTTCCTCGTGTC 58.536 45.455 0.00 0.00 0.00 3.67
19 20 3.118371 ACTGTTTCCTTTCTTCCTCGTGT 60.118 43.478 0.00 0.00 0.00 4.49
20 21 3.248602 CACTGTTTCCTTTCTTCCTCGTG 59.751 47.826 0.00 0.00 0.00 4.35
21 22 3.134081 TCACTGTTTCCTTTCTTCCTCGT 59.866 43.478 0.00 0.00 0.00 4.18
22 23 3.728845 TCACTGTTTCCTTTCTTCCTCG 58.271 45.455 0.00 0.00 0.00 4.63
23 24 4.457257 CCATCACTGTTTCCTTTCTTCCTC 59.543 45.833 0.00 0.00 0.00 3.71
24 25 4.141158 ACCATCACTGTTTCCTTTCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
25 26 4.145052 ACCATCACTGTTTCCTTTCTTCC 58.855 43.478 0.00 0.00 0.00 3.46
26 27 5.774498 AACCATCACTGTTTCCTTTCTTC 57.226 39.130 0.00 0.00 0.00 2.87
27 28 6.340522 CAAAACCATCACTGTTTCCTTTCTT 58.659 36.000 0.00 0.00 34.97 2.52
28 29 5.163416 CCAAAACCATCACTGTTTCCTTTCT 60.163 40.000 0.00 0.00 34.97 2.52
29 30 5.049828 CCAAAACCATCACTGTTTCCTTTC 58.950 41.667 0.00 0.00 34.97 2.62
30 31 4.683129 GCCAAAACCATCACTGTTTCCTTT 60.683 41.667 0.00 0.00 34.97 3.11
31 32 3.181466 GCCAAAACCATCACTGTTTCCTT 60.181 43.478 0.00 0.00 34.97 3.36
32 33 2.365293 GCCAAAACCATCACTGTTTCCT 59.635 45.455 0.00 0.00 34.97 3.36
33 34 2.102252 TGCCAAAACCATCACTGTTTCC 59.898 45.455 0.00 0.00 34.97 3.13
34 35 3.451141 TGCCAAAACCATCACTGTTTC 57.549 42.857 0.00 0.00 34.97 2.78
35 36 3.432046 CCTTGCCAAAACCATCACTGTTT 60.432 43.478 0.00 0.00 37.52 2.83
36 37 2.102925 CCTTGCCAAAACCATCACTGTT 59.897 45.455 0.00 0.00 0.00 3.16
37 38 1.688197 CCTTGCCAAAACCATCACTGT 59.312 47.619 0.00 0.00 0.00 3.55
38 39 1.962807 TCCTTGCCAAAACCATCACTG 59.037 47.619 0.00 0.00 0.00 3.66
39 40 2.380064 TCCTTGCCAAAACCATCACT 57.620 45.000 0.00 0.00 0.00 3.41
40 41 3.328505 CAATCCTTGCCAAAACCATCAC 58.671 45.455 0.00 0.00 0.00 3.06
41 42 3.681593 CAATCCTTGCCAAAACCATCA 57.318 42.857 0.00 0.00 0.00 3.07
107 108 6.774656 CAGCTTTACCATCTCCCAATATTTCT 59.225 38.462 0.00 0.00 0.00 2.52
117 118 3.127721 GCAGTTTCAGCTTTACCATCTCC 59.872 47.826 0.00 0.00 0.00 3.71
139 140 3.350912 GTGTTACCGCTGCAATTATTCG 58.649 45.455 0.00 0.00 0.00 3.34
151 155 0.828677 ACCTCCTATGGTGTTACCGC 59.171 55.000 0.00 0.00 42.58 5.68
189 208 0.465278 GCCCTGCCTTCTTCAGATCC 60.465 60.000 0.00 0.00 33.54 3.36
321 340 2.091278 CCATAGGGGATAGGGCGATCTA 60.091 54.545 0.00 0.00 40.01 1.98
326 345 1.983224 CACCATAGGGGATAGGGCG 59.017 63.158 0.00 0.00 39.01 6.13
327 346 0.842467 AGCACCATAGGGGATAGGGC 60.842 60.000 0.00 0.00 39.01 5.19
338 357 4.849518 TGCCACATTTAGTTAGCACCATA 58.150 39.130 0.00 0.00 33.28 2.74
376 395 4.751600 TCGCTTCAGTAATCATATTGCCTG 59.248 41.667 0.00 0.00 0.00 4.85
401 420 1.007387 CGACCATCATCATCCGCGA 60.007 57.895 8.23 0.00 0.00 5.87
406 425 0.315251 TCCGCTCGACCATCATCATC 59.685 55.000 0.00 0.00 0.00 2.92
407 426 0.752658 TTCCGCTCGACCATCATCAT 59.247 50.000 0.00 0.00 0.00 2.45
408 427 0.103026 CTTCCGCTCGACCATCATCA 59.897 55.000 0.00 0.00 0.00 3.07
432 451 1.608590 ACATCAGTTTTGGTGCCTTCG 59.391 47.619 0.00 0.00 39.10 3.79
443 462 3.503748 GCAGCTTCAACCTACATCAGTTT 59.496 43.478 0.00 0.00 0.00 2.66
446 465 2.983229 AGCAGCTTCAACCTACATCAG 58.017 47.619 0.00 0.00 0.00 2.90
463 491 4.759693 AGTTTTCACATCGTCCATAAAGCA 59.240 37.500 0.00 0.00 0.00 3.91
464 492 5.088739 CAGTTTTCACATCGTCCATAAAGC 58.911 41.667 0.00 0.00 0.00 3.51
469 497 4.326826 ACATCAGTTTTCACATCGTCCAT 58.673 39.130 0.00 0.00 0.00 3.41
547 600 3.326747 GAAGGTCGATACAACAAGCACT 58.673 45.455 0.00 0.00 0.00 4.40
580 681 4.319839 GCAAGGAAAAGGAAAGACTCTTCG 60.320 45.833 0.00 0.00 0.00 3.79
640 745 0.457443 GCCCATTGGAGTAAAGCAGC 59.543 55.000 3.62 0.00 0.00 5.25
702 818 1.393539 CACATTCCACAACCGTCGATC 59.606 52.381 0.00 0.00 0.00 3.69
715 831 0.537143 TGTGCCACCTGTCACATTCC 60.537 55.000 0.00 0.00 38.18 3.01
716 832 3.019964 TGTGCCACCTGTCACATTC 57.980 52.632 0.00 0.00 38.18 2.67
736 852 1.278238 CCGTTGGTCTGTCGATAAGC 58.722 55.000 0.00 0.00 0.00 3.09
746 862 2.113139 CAACCCAGCCGTTGGTCT 59.887 61.111 0.09 0.00 46.25 3.85
760 876 1.941812 CTGTGAACGTGGAGCCAAC 59.058 57.895 0.00 0.00 0.00 3.77
861 1015 2.797156 GGAGACTATTATGTGCAGTGCG 59.203 50.000 11.20 0.00 0.00 5.34
873 1027 9.014297 ACGAAAATTCAATCTTTGGAGACTATT 57.986 29.630 0.00 0.00 33.99 1.73
875 1029 7.979444 ACGAAAATTCAATCTTTGGAGACTA 57.021 32.000 0.00 0.00 33.99 2.59
876 1030 6.884280 ACGAAAATTCAATCTTTGGAGACT 57.116 33.333 0.00 0.00 33.99 3.24
877 1031 7.581476 TGTACGAAAATTCAATCTTTGGAGAC 58.419 34.615 0.00 0.00 33.99 3.36
886 1040 6.899114 AGGACACTTGTACGAAAATTCAATC 58.101 36.000 0.00 0.00 33.01 2.67
892 1046 4.969484 AGGAAGGACACTTGTACGAAAAT 58.031 39.130 0.00 0.00 36.97 1.82
934 1095 2.483363 CCACTCTAGCCTGATCAAGCAG 60.483 54.545 18.29 12.73 35.66 4.24
988 1160 4.247380 CGGCATGGCTCCTCTCCC 62.247 72.222 18.09 0.00 0.00 4.30
1104 1277 0.942962 CCTTCTTCATGATGCGGCTC 59.057 55.000 0.00 0.00 0.00 4.70
1266 1439 2.273449 GTGGTCATGGCCCAGAGG 59.727 66.667 15.27 0.00 31.13 3.69
1311 1484 0.976641 TGTGGAGGTAGTGCTTGAGG 59.023 55.000 0.00 0.00 0.00 3.86
1387 1566 0.676466 TTATTGTCGGGCAGGTGCTG 60.676 55.000 1.26 0.00 41.70 4.41
1389 1568 0.381801 CATTATTGTCGGGCAGGTGC 59.618 55.000 0.00 0.00 41.14 5.01
1390 1569 0.381801 GCATTATTGTCGGGCAGGTG 59.618 55.000 0.00 0.00 0.00 4.00
1391 1570 0.751643 GGCATTATTGTCGGGCAGGT 60.752 55.000 0.00 0.00 0.00 4.00
1392 1571 0.751277 TGGCATTATTGTCGGGCAGG 60.751 55.000 0.00 0.00 0.00 4.85
1394 1573 1.034838 GGTGGCATTATTGTCGGGCA 61.035 55.000 0.00 0.00 0.00 5.36
1395 1574 1.733526 GGTGGCATTATTGTCGGGC 59.266 57.895 0.00 0.00 0.00 6.13
1396 1575 1.444119 CCGGTGGCATTATTGTCGGG 61.444 60.000 0.00 0.00 33.27 5.14
1397 1576 0.746563 ACCGGTGGCATTATTGTCGG 60.747 55.000 6.12 0.00 41.45 4.79
1398 1577 1.091537 AACCGGTGGCATTATTGTCG 58.908 50.000 8.52 0.00 0.00 4.35
1399 1578 2.031191 CGTAACCGGTGGCATTATTGTC 59.969 50.000 8.52 0.00 0.00 3.18
1404 1589 1.449956 GGCGTAACCGGTGGCATTA 60.450 57.895 22.25 3.56 33.68 1.90
1426 1611 4.830765 GACAGCGGCGCCACCATA 62.831 66.667 30.40 0.00 39.03 2.74
1454 1639 2.532532 ATCATCATGCCTCCCCGGG 61.533 63.158 15.80 15.80 0.00 5.73
1455 1640 1.303074 CATCATCATGCCTCCCCGG 60.303 63.158 0.00 0.00 0.00 5.73
1456 1641 0.327259 ATCATCATCATGCCTCCCCG 59.673 55.000 0.00 0.00 0.00 5.73
1457 1642 1.616187 CCATCATCATCATGCCTCCCC 60.616 57.143 0.00 0.00 0.00 4.81
1508 1693 3.292936 GCTGCTGCTGGTGTTGCT 61.293 61.111 8.53 0.00 36.03 3.91
1511 1696 3.292936 GCTGCTGCTGCTGGTGTT 61.293 61.111 22.10 0.00 40.48 3.32
1540 1725 1.034292 GCTCTCCCTCCCATTGCAAC 61.034 60.000 0.00 0.00 0.00 4.17
1605 1790 1.252904 ATCCGAACCCCGACGAAGAA 61.253 55.000 0.00 0.00 41.76 2.52
1608 1793 2.574929 CATCCGAACCCCGACGAA 59.425 61.111 0.00 0.00 41.76 3.85
1624 1809 2.044793 AGATGTCACCCCTCTTTCCA 57.955 50.000 0.00 0.00 0.00 3.53
1655 1847 2.354821 ACTTTGGTCAGCTCAAAACGAC 59.645 45.455 0.00 0.00 34.26 4.34
1656 1848 2.354510 CACTTTGGTCAGCTCAAAACGA 59.645 45.455 0.00 0.00 34.26 3.85
1657 1849 2.354510 TCACTTTGGTCAGCTCAAAACG 59.645 45.455 1.29 0.00 34.26 3.60
1658 1850 3.378427 ACTCACTTTGGTCAGCTCAAAAC 59.622 43.478 1.29 0.00 34.26 2.43
1659 1851 3.378112 CACTCACTTTGGTCAGCTCAAAA 59.622 43.478 1.29 0.00 34.26 2.44
1730 1926 4.855340 TCCTTGTACTGAATGGATTTCCC 58.145 43.478 0.00 0.00 33.04 3.97
1787 2030 7.123847 ACTCGTAGTTATACATTCCTCCTGTTT 59.876 37.037 0.00 0.00 31.76 2.83
1788 2031 6.606395 ACTCGTAGTTATACATTCCTCCTGTT 59.394 38.462 0.00 0.00 31.76 3.16
1790 2033 6.487331 AGACTCGTAGTTATACATTCCTCCTG 59.513 42.308 0.00 0.00 31.76 3.86
1791 2034 6.603224 AGACTCGTAGTTATACATTCCTCCT 58.397 40.000 0.00 0.00 31.76 3.69
1792 2035 6.880942 AGACTCGTAGTTATACATTCCTCC 57.119 41.667 0.00 0.00 31.76 4.30
1794 2037 8.743085 TTGTAGACTCGTAGTTATACATTCCT 57.257 34.615 11.22 0.00 33.58 3.36
1803 2046 8.618677 CAGGTATGATTTGTAGACTCGTAGTTA 58.381 37.037 0.00 0.00 0.00 2.24
1805 2048 6.039493 CCAGGTATGATTTGTAGACTCGTAGT 59.961 42.308 0.00 0.00 0.00 2.73
1806 2049 6.439599 CCAGGTATGATTTGTAGACTCGTAG 58.560 44.000 0.00 0.00 0.00 3.51
1808 2051 4.099573 CCCAGGTATGATTTGTAGACTCGT 59.900 45.833 0.00 0.00 0.00 4.18
1809 2052 4.341235 TCCCAGGTATGATTTGTAGACTCG 59.659 45.833 0.00 0.00 0.00 4.18
1810 2053 5.871396 TCCCAGGTATGATTTGTAGACTC 57.129 43.478 0.00 0.00 0.00 3.36
1813 2056 4.721776 AGCTTCCCAGGTATGATTTGTAGA 59.278 41.667 0.00 0.00 0.00 2.59
1814 2057 5.041191 AGCTTCCCAGGTATGATTTGTAG 57.959 43.478 0.00 0.00 0.00 2.74
1816 2059 3.525199 AGAGCTTCCCAGGTATGATTTGT 59.475 43.478 0.00 0.00 0.00 2.83
1817 2060 4.133078 GAGAGCTTCCCAGGTATGATTTG 58.867 47.826 0.00 0.00 0.00 2.32
1818 2061 3.137360 GGAGAGCTTCCCAGGTATGATTT 59.863 47.826 0.00 0.00 40.37 2.17
1819 2062 2.708325 GGAGAGCTTCCCAGGTATGATT 59.292 50.000 0.00 0.00 40.37 2.57
1820 2063 2.334023 GGAGAGCTTCCCAGGTATGAT 58.666 52.381 0.00 0.00 40.37 2.45
1821 2064 1.008327 TGGAGAGCTTCCCAGGTATGA 59.992 52.381 11.06 0.00 46.19 2.15
1822 2065 1.500474 TGGAGAGCTTCCCAGGTATG 58.500 55.000 11.06 0.00 46.19 2.39
1823 2066 2.053244 CATGGAGAGCTTCCCAGGTAT 58.947 52.381 12.61 0.00 46.19 2.73
1825 2068 0.252881 TCATGGAGAGCTTCCCAGGT 60.253 55.000 16.15 0.00 46.19 4.00
1826 2069 0.914644 TTCATGGAGAGCTTCCCAGG 59.085 55.000 12.11 12.11 46.19 4.45
1827 2070 3.294038 AATTCATGGAGAGCTTCCCAG 57.706 47.619 12.61 6.01 46.19 4.45
1828 2071 3.782523 AGTAATTCATGGAGAGCTTCCCA 59.217 43.478 9.98 9.98 46.19 4.37
1830 2073 5.189180 ACAAGTAATTCATGGAGAGCTTCC 58.811 41.667 7.71 7.71 46.98 3.46
1832 2075 8.515414 GTTAAACAAGTAATTCATGGAGAGCTT 58.485 33.333 0.00 0.00 0.00 3.74
1833 2076 7.665559 TGTTAAACAAGTAATTCATGGAGAGCT 59.334 33.333 0.00 0.00 0.00 4.09
1834 2077 7.816640 TGTTAAACAAGTAATTCATGGAGAGC 58.183 34.615 0.00 0.00 0.00 4.09
1835 2078 9.612620 GTTGTTAAACAAGTAATTCATGGAGAG 57.387 33.333 0.00 0.00 39.00 3.20
1836 2079 9.126151 TGTTGTTAAACAAGTAATTCATGGAGA 57.874 29.630 0.00 0.00 43.32 3.71
1852 2095 3.002862 TGTGTCTCGCCATGTTGTTAAAC 59.997 43.478 0.00 0.00 36.78 2.01
1853 2096 3.206964 TGTGTCTCGCCATGTTGTTAAA 58.793 40.909 0.00 0.00 0.00 1.52
1854 2097 2.839975 TGTGTCTCGCCATGTTGTTAA 58.160 42.857 0.00 0.00 0.00 2.01
1855 2098 2.535012 TGTGTCTCGCCATGTTGTTA 57.465 45.000 0.00 0.00 0.00 2.41
1858 2101 2.095853 GGTATTGTGTCTCGCCATGTTG 59.904 50.000 0.00 0.00 0.00 3.33
1859 2102 2.290008 TGGTATTGTGTCTCGCCATGTT 60.290 45.455 0.00 0.00 0.00 2.71
1860 2103 1.277842 TGGTATTGTGTCTCGCCATGT 59.722 47.619 0.00 0.00 0.00 3.21
1861 2104 2.022764 TGGTATTGTGTCTCGCCATG 57.977 50.000 0.00 0.00 0.00 3.66
1862 2105 2.779755 TTGGTATTGTGTCTCGCCAT 57.220 45.000 0.00 0.00 0.00 4.40
1864 2107 6.649141 TCAATATATTGGTATTGTGTCTCGCC 59.351 38.462 22.31 0.00 40.97 5.54
1866 2109 9.208022 ACATCAATATATTGGTATTGTGTCTCG 57.792 33.333 22.31 5.05 40.97 4.04
1906 2497 0.825010 TAGGTCGCGGGGTTCCTATC 60.825 60.000 6.13 0.00 0.00 2.08
1917 2508 3.584052 CGGAGGGAGTAGGTCGCG 61.584 72.222 0.00 0.00 43.00 5.87
1932 2523 4.421948 GACGCTCTTATATTATGGGACGG 58.578 47.826 0.00 0.00 0.00 4.79
1942 2533 8.687292 TCCCATAATATACGACGCTCTTATAT 57.313 34.615 0.00 0.00 28.65 0.86
1945 2536 6.183360 CCATCCCATAATATACGACGCTCTTA 60.183 42.308 0.00 0.00 0.00 2.10
1946 2537 5.394224 CCATCCCATAATATACGACGCTCTT 60.394 44.000 0.00 0.00 0.00 2.85
1947 2538 4.098044 CCATCCCATAATATACGACGCTCT 59.902 45.833 0.00 0.00 0.00 4.09
1949 2540 4.021229 TCCATCCCATAATATACGACGCT 58.979 43.478 0.00 0.00 0.00 5.07
1950 2541 4.360563 CTCCATCCCATAATATACGACGC 58.639 47.826 0.00 0.00 0.00 5.19
1951 2542 4.202121 CCCTCCATCCCATAATATACGACG 60.202 50.000 0.00 0.00 0.00 5.12
1952 2543 4.960469 TCCCTCCATCCCATAATATACGAC 59.040 45.833 0.00 0.00 0.00 4.34
1953 2544 5.208890 CTCCCTCCATCCCATAATATACGA 58.791 45.833 0.00 0.00 0.00 3.43
1954 2545 4.962995 ACTCCCTCCATCCCATAATATACG 59.037 45.833 0.00 0.00 0.00 3.06
1956 2547 6.009297 TGGTACTCCCTCCATCCCATAATATA 60.009 42.308 0.00 0.00 0.00 0.86
1959 2550 3.115962 TGGTACTCCCTCCATCCCATAAT 60.116 47.826 0.00 0.00 0.00 1.28
1960 2551 2.251605 TGGTACTCCCTCCATCCCATAA 59.748 50.000 0.00 0.00 0.00 1.90
1961 2552 1.870327 TGGTACTCCCTCCATCCCATA 59.130 52.381 0.00 0.00 0.00 2.74
1962 2553 0.647738 TGGTACTCCCTCCATCCCAT 59.352 55.000 0.00 0.00 0.00 4.00
1963 2554 0.419865 TTGGTACTCCCTCCATCCCA 59.580 55.000 0.00 0.00 33.50 4.37
1964 2555 1.821088 ATTGGTACTCCCTCCATCCC 58.179 55.000 0.00 0.00 33.50 3.85
1965 2556 3.588569 ACTATTGGTACTCCCTCCATCC 58.411 50.000 0.00 0.00 33.50 3.51
1966 2557 5.725325 GTACTATTGGTACTCCCTCCATC 57.275 47.826 3.29 0.00 45.25 3.51
1981 2624 9.174166 CCATTTGTAGCTTACCAAAGTACTATT 57.826 33.333 0.00 0.00 34.99 1.73
1982 2625 8.545472 TCCATTTGTAGCTTACCAAAGTACTAT 58.455 33.333 0.00 0.00 34.99 2.12
1994 2637 6.655003 CACCTCTCTTTTCCATTTGTAGCTTA 59.345 38.462 0.00 0.00 0.00 3.09
1997 2640 5.003804 TCACCTCTCTTTTCCATTTGTAGC 58.996 41.667 0.00 0.00 0.00 3.58
2014 2657 2.670414 CTCGATGCAAAGAGTTCACCTC 59.330 50.000 12.13 0.00 40.80 3.85
2015 2658 2.037772 ACTCGATGCAAAGAGTTCACCT 59.962 45.455 18.18 0.00 44.46 4.00
2016 2659 2.417719 ACTCGATGCAAAGAGTTCACC 58.582 47.619 18.18 0.00 44.46 4.02
2022 2665 2.029728 CCGCTTAACTCGATGCAAAGAG 59.970 50.000 17.06 17.06 40.16 2.85
2023 2666 1.999735 CCGCTTAACTCGATGCAAAGA 59.000 47.619 0.00 0.00 0.00 2.52
2024 2667 1.529826 GCCGCTTAACTCGATGCAAAG 60.530 52.381 0.00 0.00 0.00 2.77
2025 2668 0.446222 GCCGCTTAACTCGATGCAAA 59.554 50.000 0.00 0.00 0.00 3.68
2029 2672 1.203928 CAGAGCCGCTTAACTCGATG 58.796 55.000 0.00 0.00 37.99 3.84
2031 2674 0.601558 AACAGAGCCGCTTAACTCGA 59.398 50.000 0.00 0.00 37.99 4.04
2033 2676 1.390463 CGAAACAGAGCCGCTTAACTC 59.610 52.381 0.00 0.00 0.00 3.01
2036 2679 1.425412 GACGAAACAGAGCCGCTTAA 58.575 50.000 0.00 0.00 0.00 1.85
2037 2680 0.389426 GGACGAAACAGAGCCGCTTA 60.389 55.000 0.00 0.00 0.00 3.09
2040 2683 0.802607 CTAGGACGAAACAGAGCCGC 60.803 60.000 0.00 0.00 0.00 6.53
2042 2685 1.544691 TGTCTAGGACGAAACAGAGCC 59.455 52.381 0.00 0.00 34.95 4.70
2044 2687 4.396478 TGAGATGTCTAGGACGAAACAGAG 59.604 45.833 0.00 0.00 34.95 3.35
2046 2689 4.703645 TGAGATGTCTAGGACGAAACAG 57.296 45.455 0.00 0.00 34.95 3.16
2048 2691 6.157211 TCTTTTGAGATGTCTAGGACGAAAC 58.843 40.000 0.00 0.00 34.95 2.78
2050 2693 5.977489 TCTTTTGAGATGTCTAGGACGAA 57.023 39.130 0.00 0.00 34.95 3.85
2051 2694 7.749356 AAGCTCTTTTGAGATGTCTAGGACGA 61.749 42.308 0.00 0.00 45.48 4.20
2052 2695 5.623368 AAGCTCTTTTGAGATGTCTAGGACG 60.623 44.000 0.00 0.00 45.48 4.79
2054 2697 6.169094 CAAAGCTCTTTTGAGATGTCTAGGA 58.831 40.000 0.00 0.00 45.48 2.94
2055 2698 5.353678 CCAAAGCTCTTTTGAGATGTCTAGG 59.646 44.000 0.00 0.00 45.48 3.02
2056 2699 5.936956 ACCAAAGCTCTTTTGAGATGTCTAG 59.063 40.000 0.00 0.00 45.48 2.43
2058 2701 4.723309 ACCAAAGCTCTTTTGAGATGTCT 58.277 39.130 0.00 0.00 45.48 3.41
2059 2702 4.759183 AGACCAAAGCTCTTTTGAGATGTC 59.241 41.667 0.00 0.00 45.48 3.06
2061 2704 4.615452 GCAGACCAAAGCTCTTTTGAGATG 60.615 45.833 0.00 0.00 45.48 2.90
2066 2709 1.959282 AGGCAGACCAAAGCTCTTTTG 59.041 47.619 0.00 0.00 44.67 2.44
2067 2710 2.371658 AGGCAGACCAAAGCTCTTTT 57.628 45.000 0.00 0.00 39.06 2.27
2070 2713 1.211457 CCATAGGCAGACCAAAGCTCT 59.789 52.381 0.00 0.00 39.06 4.09
2072 2715 3.890527 CCATAGGCAGACCAAAGCT 57.109 52.632 0.00 0.00 39.06 3.74
2084 2727 1.027357 GCATCAACAGTGGCCATAGG 58.973 55.000 9.72 3.89 0.00 2.57
2085 2728 1.027357 GGCATCAACAGTGGCCATAG 58.973 55.000 9.72 7.37 45.70 2.23
2086 2729 3.189568 GGCATCAACAGTGGCCATA 57.810 52.632 9.72 0.00 45.70 2.74
2087 2730 4.023137 GGCATCAACAGTGGCCAT 57.977 55.556 9.72 0.00 45.70 4.40
2089 2732 0.811281 GTAAGGCATCAACAGTGGCC 59.189 55.000 0.00 0.00 46.77 5.36
2090 2733 0.447801 CGTAAGGCATCAACAGTGGC 59.552 55.000 0.00 0.00 41.96 5.01
2091 2734 1.808411 ACGTAAGGCATCAACAGTGG 58.192 50.000 0.00 0.00 46.39 4.00
2092 2735 3.067106 AGAACGTAAGGCATCAACAGTG 58.933 45.455 0.00 0.00 46.39 3.66
2096 2739 3.250040 ACACAAGAACGTAAGGCATCAAC 59.750 43.478 0.00 0.00 46.39 3.18
2097 2740 3.472652 ACACAAGAACGTAAGGCATCAA 58.527 40.909 0.00 0.00 46.39 2.57
2098 2741 3.120321 ACACAAGAACGTAAGGCATCA 57.880 42.857 0.00 0.00 46.39 3.07
2100 2743 3.994392 CAGTACACAAGAACGTAAGGCAT 59.006 43.478 0.00 0.00 46.39 4.40
2102 2745 2.735134 CCAGTACACAAGAACGTAAGGC 59.265 50.000 0.00 0.00 46.39 4.35
2103 2746 4.247267 TCCAGTACACAAGAACGTAAGG 57.753 45.455 0.00 0.00 46.39 2.69
2104 2747 8.516313 GTGAGATCCAGTACACAAGAACGTAAG 61.516 44.444 0.00 0.00 36.96 2.34
2105 2748 5.242171 TGAGATCCAGTACACAAGAACGTAA 59.758 40.000 0.00 0.00 0.00 3.18
2107 2750 3.572682 TGAGATCCAGTACACAAGAACGT 59.427 43.478 0.00 0.00 0.00 3.99
2109 2752 4.883083 TGTGAGATCCAGTACACAAGAAC 58.117 43.478 0.00 0.00 39.70 3.01
2110 2753 5.745312 ATGTGAGATCCAGTACACAAGAA 57.255 39.130 0.00 0.00 44.36 2.52
2111 2754 5.952347 AGTATGTGAGATCCAGTACACAAGA 59.048 40.000 0.00 0.00 44.36 3.02
2112 2755 6.214191 AGTATGTGAGATCCAGTACACAAG 57.786 41.667 0.00 0.00 44.36 3.16
2113 2756 6.605471 AAGTATGTGAGATCCAGTACACAA 57.395 37.500 0.00 0.00 44.36 3.33
2114 2757 6.605471 AAAGTATGTGAGATCCAGTACACA 57.395 37.500 0.00 0.00 45.06 3.72
2115 2758 7.097192 TCAAAAGTATGTGAGATCCAGTACAC 58.903 38.462 0.00 0.00 0.00 2.90
2116 2759 7.239763 TCAAAAGTATGTGAGATCCAGTACA 57.760 36.000 0.00 0.00 0.00 2.90
2117 2760 8.723942 AATCAAAAGTATGTGAGATCCAGTAC 57.276 34.615 0.00 0.00 0.00 2.73
2118 2761 7.987458 GGAATCAAAAGTATGTGAGATCCAGTA 59.013 37.037 0.00 0.00 35.38 2.74
2119 2762 6.825721 GGAATCAAAAGTATGTGAGATCCAGT 59.174 38.462 0.00 0.00 35.38 4.00
2120 2763 7.052873 AGGAATCAAAAGTATGTGAGATCCAG 58.947 38.462 9.58 0.00 36.70 3.86
2122 2765 7.278875 AGAGGAATCAAAAGTATGTGAGATCC 58.721 38.462 0.00 0.00 35.46 3.36
2123 2766 8.203485 AGAGAGGAATCAAAAGTATGTGAGATC 58.797 37.037 0.00 0.00 0.00 2.75
2124 2767 8.088463 AGAGAGGAATCAAAAGTATGTGAGAT 57.912 34.615 0.00 0.00 0.00 2.75
2125 2768 7.487822 AGAGAGGAATCAAAAGTATGTGAGA 57.512 36.000 0.00 0.00 0.00 3.27
2126 2769 9.829507 ATTAGAGAGGAATCAAAAGTATGTGAG 57.170 33.333 0.00 0.00 0.00 3.51
2128 2771 9.050601 GGATTAGAGAGGAATCAAAAGTATGTG 57.949 37.037 0.00 0.00 35.40 3.21
2129 2772 8.997734 AGGATTAGAGAGGAATCAAAAGTATGT 58.002 33.333 0.00 0.00 35.40 2.29
2130 2773 9.487790 GAGGATTAGAGAGGAATCAAAAGTATG 57.512 37.037 0.00 0.00 35.40 2.39
2131 2774 9.218525 TGAGGATTAGAGAGGAATCAAAAGTAT 57.781 33.333 0.00 0.00 35.40 2.12
2133 2776 7.502060 TGAGGATTAGAGAGGAATCAAAAGT 57.498 36.000 0.00 0.00 35.40 2.66
2138 2781 8.962912 TCAATATGAGGATTAGAGAGGAATCA 57.037 34.615 0.00 0.00 35.40 2.57
2149 2792 9.552695 ACAGGAGACATATCAATATGAGGATTA 57.447 33.333 15.22 0.00 42.05 1.75
2153 2796 7.448420 ACAACAGGAGACATATCAATATGAGG 58.552 38.462 15.22 2.91 42.05 3.86
2154 2797 8.146412 TGACAACAGGAGACATATCAATATGAG 58.854 37.037 15.22 2.93 42.05 2.90
2155 2798 7.928167 GTGACAACAGGAGACATATCAATATGA 59.072 37.037 15.22 0.00 42.05 2.15
2156 2799 7.712205 TGTGACAACAGGAGACATATCAATATG 59.288 37.037 8.18 8.18 44.37 1.78
2158 2801 7.181569 TGTGACAACAGGAGACATATCAATA 57.818 36.000 0.00 0.00 0.00 1.90
2160 2803 5.482163 TGTGACAACAGGAGACATATCAA 57.518 39.130 0.00 0.00 0.00 2.57
2161 2804 5.046376 ACATGTGACAACAGGAGACATATCA 60.046 40.000 0.00 0.00 40.57 2.15
2162 2805 5.292834 CACATGTGACAACAGGAGACATATC 59.707 44.000 21.64 0.00 40.57 1.63
2163 2806 5.181009 CACATGTGACAACAGGAGACATAT 58.819 41.667 21.64 0.00 40.57 1.78
2265 3365 5.004922 TCTTTTAACTTGTTGGTGGCTTG 57.995 39.130 0.00 0.00 0.00 4.01
2270 3370 8.107564 CGTTTCATTTCTTTTAACTTGTTGGTG 58.892 33.333 0.00 0.00 0.00 4.17
2295 3395 3.973135 CGAGTAGACATCCGGTTAAATCG 59.027 47.826 0.00 0.00 0.00 3.34
2317 3417 2.289945 ACATGCCTCTGGAACTTCACTC 60.290 50.000 0.00 0.00 0.00 3.51
2363 3463 8.440771 CCCTCTTATACATACCTCTGGATTTTT 58.559 37.037 0.00 0.00 0.00 1.94
2364 3464 7.017651 CCCCTCTTATACATACCTCTGGATTTT 59.982 40.741 0.00 0.00 0.00 1.82
2365 3465 6.502158 CCCCTCTTATACATACCTCTGGATTT 59.498 42.308 0.00 0.00 0.00 2.17
2366 3466 6.026186 CCCCTCTTATACATACCTCTGGATT 58.974 44.000 0.00 0.00 0.00 3.01
2367 3467 5.318889 TCCCCTCTTATACATACCTCTGGAT 59.681 44.000 0.00 0.00 0.00 3.41
2386 3486 5.357032 CACTTGCGTTAATAATTCTTCCCCT 59.643 40.000 0.00 0.00 0.00 4.79
2389 3489 8.021396 ACTTTCACTTGCGTTAATAATTCTTCC 58.979 33.333 0.00 0.00 0.00 3.46
2390 3490 8.950403 ACTTTCACTTGCGTTAATAATTCTTC 57.050 30.769 0.00 0.00 0.00 2.87
2391 3491 7.744715 CGACTTTCACTTGCGTTAATAATTCTT 59.255 33.333 0.00 0.00 0.00 2.52
2392 3492 7.234384 CGACTTTCACTTGCGTTAATAATTCT 58.766 34.615 0.00 0.00 0.00 2.40
2393 3493 6.464834 CCGACTTTCACTTGCGTTAATAATTC 59.535 38.462 0.00 0.00 0.00 2.17
2394 3494 6.072893 ACCGACTTTCACTTGCGTTAATAATT 60.073 34.615 0.00 0.00 0.00 1.40
2395 3495 5.410439 ACCGACTTTCACTTGCGTTAATAAT 59.590 36.000 0.00 0.00 0.00 1.28
2396 3496 4.751098 ACCGACTTTCACTTGCGTTAATAA 59.249 37.500 0.00 0.00 0.00 1.40
2397 3497 4.150980 CACCGACTTTCACTTGCGTTAATA 59.849 41.667 0.00 0.00 0.00 0.98
2398 3498 3.059188 CACCGACTTTCACTTGCGTTAAT 60.059 43.478 0.00 0.00 0.00 1.40
2399 3499 2.285756 CACCGACTTTCACTTGCGTTAA 59.714 45.455 0.00 0.00 0.00 2.01
2400 3500 1.862201 CACCGACTTTCACTTGCGTTA 59.138 47.619 0.00 0.00 0.00 3.18
2423 3523 5.059404 ACCACATGAAAACAAATCGATCC 57.941 39.130 0.00 0.00 0.00 3.36
2424 3524 5.698832 TGACCACATGAAAACAAATCGATC 58.301 37.500 0.00 0.00 0.00 3.69
2427 3527 5.388682 GCATTGACCACATGAAAACAAATCG 60.389 40.000 0.00 0.00 0.00 3.34
2473 3573 2.671396 GAGCTTTCAAGGCGATTAACGA 59.329 45.455 0.00 0.00 45.77 3.85
2499 3627 4.327854 CGTAGCTAACCTTTTCTTGCTG 57.672 45.455 0.00 0.00 32.72 4.41
2543 3671 2.375766 GCGTCTGTTCAGACCGCAG 61.376 63.158 27.01 16.67 37.83 5.18
2546 3674 1.797933 CTCGCGTCTGTTCAGACCG 60.798 63.158 22.07 23.09 35.52 4.79
2550 3678 1.337821 GGTAACTCGCGTCTGTTCAG 58.662 55.000 5.77 0.00 0.00 3.02
2552 3680 1.069378 CCGGTAACTCGCGTCTGTTC 61.069 60.000 5.77 5.02 0.00 3.18
2570 3698 9.763465 CAGACATTTCAATTTTATGAATTTGCC 57.237 29.630 0.00 0.00 38.98 4.52
2571 3699 9.269415 GCAGACATTTCAATTTTATGAATTTGC 57.731 29.630 0.00 0.00 38.98 3.68
2592 3720 5.353678 AGAGTAGCAGAAATGAAATGCAGAC 59.646 40.000 0.00 0.00 42.45 3.51
2617 3745 2.765689 TTGTGGTTCCCAAATGAGGT 57.234 45.000 0.00 0.00 34.18 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.