>input_sequence_73218
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----------------------------------------------------ATGCCGGAGTCGGACAACGACTCCGGCG
GGCCGAGCAACACCGGCGGGGAGGGGGAGCTGTCGTCGCCGCGGGAGCAGGACCGCTTCCTGCCCATCGCCAACGTGAGC
CGCATCATGAAGAAGGCGCTCCCGGCCAACGCCAAGATCAGCAAGGACGCCAAGGAGACGGTGCAGGAGTGCGTCTCCGA
GTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGACCTCC
TCTGGGCCATGACCACCCTCGGCTTCGAGGACTACGTCGACCCCCTCAAGCACTACCTCCACAAGTTCCGCGAGATCGAG
GGCGAGAGGGCCGCCGCCACGTCGACGTCAA------CCGCGCCGCAGCACCTGCCCG------ACAATAATGCCACCGG
TTACGCCGACTATGGTGGCGCCGCTGTCCCCGCCCCGGCCCGGGGAGGCATGATGATGATGGGGCAGCCCATGTACGGCT
CACCGCCGCCGCAGCAACACCAGCAGCAGCAGCACCAACATCAGGTTGCAATGGGAGGGAGAGCGGGCTTTCCCTATCAC
GGAGGCAGCAGCGGTGGCGGCGGGTCGTCTTCTTCGTCGGGGTTCGGATGGAAAGAGGGGTGA-----------------
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>chr3B_1_TraesCS3B01G017400
GGAAAGGCAGAAGTTGACGACACGAGGAAGAAAGGAAACAGTGATGGTTTTGGCAAGGATTGCGAGGCTGAAAAGGTTGT
GCAGAACGCAAATGGCGATGGTGGCATAGAAATATTGGGAGATGGTAAAGCTGAAACTGCG---AATAATTGCAGCGGTA
ACACCATAGGAGGTTCTG---------------GAGAAAAAGATGGCGGATCTGAAGAAGGCAGGGCTGAGAATGATGCA
GAAAATGCTGGTGACTGTGAACCTGAAGAATCTGAAACTAATGAACCAGAAGCAGAAGCAGAAGCAGAAGATGTCAAATC
TAAGGAAGCCCGTGGCAATTAGATCGCCCTATCCCCTATGGTGCTAACTAAATGTGGCAAAACAAAATAGATGCCAGGCA
ATATGATTACTGAAGCGAGTCGCGGATGATGATGGTCGAGCGGAAGATTCCGAAGGCACCAAAAC---------TGATGT
AGGTTGAAGCTGCTTTATGGACGATGTGAAAACTGATGTAGGCTAGTTTATGGAGGATTAGATTTCCATGCGGA------
-------------------GGACAGAATGTTGTGTAAATAGT--------------------------------------
----------GCTTGTTGTATCGACCTTCCTTGTTTAGCTCGAAGAGTCTTTCC-TTTTCCTTGCTTGACTTGATGATTA
GCTGCTCTTTTTTT---GTCCAGAGCTGCTTTACTCCA-----------ATGGGCGGGCGGGCGGACGGACGGCCTGGAT
TGGTCTGACATGGCAGTGATCGACGGTTGTGGAATGTGACAGGTGGCACATGCTTATCGACAGACCAACGGCTGGGTTGG
CTCCACGTTCACAGCTCCATCCCTTCTTATCCGCGCAATCCAACGGACCGGACCCAGCCAAGCCATTCCCCACCACCCTC
TCCC--------------------------------------TCCTCTTCTTGTCGCACTGCACATAATAGTCTCCAAAG
ATTGAA-------TTTTCGTACAAGTGTCCTTCCTTCCAGTTAACTTCATGCTCCTGCTTGATCAGGCTAGAGTGGTTTG
AT---------TGCTTCTTGATTTGAGAC--ACAGATCGGGGAG-AGGAGCCATGCCGGAGTCGGACAACGACTCCGGCG
GGCCGAGCAACACCGGCGGGGAGGGGGAGCTGTCGTCGCCGCGGGAGCAGGACCGCTTCCTGCCCATCGCCAACGTGAGC
CGCATCATGAAGAAGGCGCTCCCGGCCAACGCCAAGATCAGCAAGGACGCCAAGGAGACGGTGCAGGAGTGCGTCTCCGA
GTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGACCTCC
TCTGGGCCATGACCACCCTCGGCTTCGAGGACTACGTCGACCCCCTCAAGCACTACCTCCACAAGTTCCGCGAGATCGAG
GGCGAGAGGGCCGCCGCCACGTCGACGTCAA------CCGCGCCGCAGCACCTGCCCG------ACAATAATGCCACCGG
TTACGCCGACTATGGTGGCGCCGCTGTCCCCGCCCCGGCCCGGGGAGGCATGATGATGATGGGGCAGCCCATGTACGGCT
CACCGCCGCCGCAGCAACACCAGCAGCAGCAGCACCAACATCAGGTTGCAATGGGAGGGAGAGCGGGCTTTCCCTATCAC
GGAGGCAGCAGCGGTGGCGGCGGGTCGTCTTCTTCGTCGGGGTTCGGATGGAAAGAGGGGTGACA-------TCTTTTCT
TTTCTTGTCGTTTTGAGCTGACCAAAGTGAGTGATTTCAACATATGTTCCTCTCTTGGATGAAGCCGT----GACTTGTA
GCTTAGGGAAATCCATTCAGTACAAGGAGGAATAATTGTTCA--------------------------------------
---------GCAAATCAGTTTTCTTCTATAAACAGGAGGAATGTATAACTACGAGTCTACAAATCATACCTGGGAAGCTC
TCCATGAATTACTTGTTTAACAACATGGCGAGACAC--------------------------------------------
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----------------------------------------------------------------AATACCAATATATTGA
TGTTAAAAGAACTCATGATAGGAACCCCGCGACCTACTCCCTCCGTCCCATAATATAAGAGCGTCGTATATTATGGGAT-
---------------------------------------------------GGAGGGAGTACCAATAGTACTTTGGTAAG
CTACAAATGGAAAAGAGAGGTGAACTCTTTGCATCGAGTTAAGCGGCTCTGTTTCGTCCTAGACATCTCAAAAGAGCTTT
GGTCTGCCTATGGCCACTGTTGATGCCTTACGTTCTTGTGTACTGGATCTCACATACTTTTGATTCCTCTCTAATCCTCA
TATTGA--------------------------------------------------------------------------
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---------------------------------------------------------------TATGTCTCCTGTTGTCA
CATGTGTTTTCAATTCTTCAGTTCTCCTGCAAATAGATTTTGCTTGATTTATGTGTTTGTCCCCTGCATCATGTACTACT
ATGTCAAGCCACCAACAAGTTAAAAGAAATGAAACGATTTAACCGGATGTCTACTCGAGTGAAGTTCCAGAGGCATGTAT
TCCTCAAAAAAAAAAAATTAAAAAAAATCCAGAGGTATGTATAAGAGGGGAAGAATTATTAACGCAAGTGAAAGTCGGTG
GAGGATCGATTTGTTTTCATGTGGTCAATGCTCACAAGTTACAATAGATATGTCGTTAAT--------------------
--------CGCCTTGAAAGCTCAAGACAGCAAGAAAAGGTTAGCTACGCTAAGCAGTTCCTACTTCGACCCTGCGGTCTG
AACAGACGCGAGTTACCGGCAAATTCATAAAATTGAAATGTCTGCATTTCATTTCTGCTACTCTACCTCATTTGGGAACC
ACAAAA
>chr3D_49
TTTAGCG------------------------------------------------AGGATTGCGAGGCTGAAAAGATTGT
GCAGAATGCAAATGGCGATGGTGGCACGGAAATATTGAGAGATGGTAAAGCTGAAACTGTGAATAATAATTGCAACGGTA
ACACCATAGGAGGTTCTGAAGATGTCAAATCTGGAGAAAAAGACGGCAGATCTGAAGAAGGCAGGGCT------------
GAAAATGCTGGTGACTGTGAAGCTGAAGAATCTGAAACCTGT---CCAGAAGCAGAAGCAGAAGCAGAAGATGTCAAATC
TAAGGAAGCCAGTGGAAATGAGATTAGCCTTAACCCCAACTGATCAAGCCTAAGATCCAAAGGAGGTGGTGA--------
---------------------------GATGAAGGTCCAGCTGATGGATGTTTCAGCCCCACTTAGTCCCAACTA-----
-------------------------------------GTAGGATAGTTTATGGAGGATTAGATTTCCTTGCGGACTGTAC
CCCAACAAGGTTAGGAAATGGACAGAATGTTGTGTAAATTGTGCTTGACATGTACTGTAGGTAGGTAGGTAGGTACGTAC
GTACTATAAGGCTTGTTGTATCGACCTTCCTTGTTTAGCTTGAAGAGTCTTTCC-TTTTCCTTGCTTGACTT-ATGATTA
GCTGCTCTTTTTTTTTTGTCCAGAACTGCTTTGCTCCA-----------ATGGACGGGCGGGCGGATGGACGGCCTGGAT
TGGTCTGACATGGCAGTAATCGACGGTTGTCCAATGTGACAGGTGGCACATACTTATCGAGTGAGCAACGGCTGGCTTGG
CTCCACGTTCACAGCTCCATCCCTTCTTATCCGCGCAATCCAACGGACCGGACCCAGCCAAGCCATTCCCCACCACCCTC
TCCCAGGTCCCC-CTGCCAACCCTCCACCATCTCCTCTCCTCTCCTCTTCTTGTTGCTCCAAACATT-------------
------TTTCAACTTTTCGTACAAGTGTCCTTCCTTCTAGTTAAGTAGTTCA---TGCTTGATCAGGCTAGAGTGGTTTG
ATGTCACCACTTGCTTGTTGATTTGAGGCAGACAGATCGAGGAG-GAGAGCCATGCCGGACTCGGACAACGAGGACT---
---CGGGCAACGCGGGC------GGGGAGCTGTCGTCGCCGCGGGAGCAGGACCGCTTCCTGCCCATCGCCAACGTCAGC
CGCATCATGAAGAAGGCGCTCCCGGCCAACGCCAAGATCAGCAAGGACGCCAAGGAGACGGTGCAGGAGTGCGTCTCCGA
GTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGACCTGC
TCTGGGCCATGACCACCCTCGGCTTCGAGGACTACGTCGACCCGCTCAAGCACTACCTCCACAAGTTCCGCGAGATCGAG
GGCGAGAGGGCCGCCGCCACATCGACATCAA------CCACGCCCGACATGCCAAGAAACA---ACAACAATGCCACCGG
TTACGCCGACGCCCC---------------------------GGGAGGCATGATGATGATGGGGCAGCCCGTGTACGGCT
C---GCCGCCGCCGCCACAGCAGCAGCAGCAGCACCAACATCAGATTGCAATGGGAGGGAGAGCGGGCTTTCCCTATCAC
GGAGGCGGCGGTGGCGGCGGCGGGTCGTCGTCATCGTCGGGGTTCGGACGGAAAGAGGGGTGACA-------TCTTTTCT
TTTCTT-----TTTGAGCTGACCAAAGTGAGTGATTTCAACATATGTTCCTCTCTTGGATGAAGCCGTACATGACTTGTA
GCTTAAGGAAATCCATTCAGTACAAGGAGGAATGATTGTTCTAATCCTCATATTGATTTGTTCATCTCATCGTCACATAT
TTGATGCTCTAAGCTAATGCTACGGAGATGTTATAGCGGAGTAGAGAGGGCTAAGGGTGGCTTGGGTGGTGGTGTGATGA
GGTATGGCGTGAGCCCACGAGGGTTTTGACACTCCGCGGTTACAGCTTTTTTGGCTTCTTATTGGCCAATGGGATGCATT
GGCATTTTGGGCAATCCTACCACCACC-----------------------------------------------------
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----------------------AACCCTGAGCACTACTCCCTTCGTTCGGAATTACTTGTCTCGGGAATGGATGTATTTA
GAACTAAAATACGTTTAGATACATCCATTTCTGCGACAAGTAATTCCAAACGGAGGGAGTACCTGAAAGAACGTGAAAAA
TAAAGACAGTCAAGTCCGCATACAGAAATATTTACAAGGCAGCCAGTATTTTGAGTAATTTCATCTTATCTACGTTC---
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---AAGCATTTTGATTTGTCACCCCACAAGTTCGATTTCTCGGTATTTTGCTGCAACCATCAATGTGTACCTAATTGTTT
GCCTTTTTAATTACTTGTAAGGACCTAAGCACGCATAAACTTCCCAGCATTTT---------------------------
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--------------------------------------------------------------CCTTCATCATGTACTACT
ATGTTAAGCTAA--------------AAAGGAAATGATTTAACCGGATGTCTACTCTAGTGAAGC---------------
---------------------------TCCAGAGGTATGTATAAGTGGTA----------AACGCAAGTGAAAGTCGGTG
GATCATGGATTTGTTTTCATGTGGTCAATGCTCACAAGTTACAATAGATATGCCGTTAATCAACACAAGTTGTATGCACC
AGCCGCTTCGCCTTGAAAGCTCAAGATAGCAAGAAAAGGTTGGCTACGCTAAGCAGTTCCTACTTTGACCATGTGGTTTC
AACAGACGCGAGTTACCAACAAATTTATAAAATTGAAATATCTGCATTTCATTTCTGCTACTCTGCCTCATCTCGGAACC
ACAAAA
>chr3A_49
------------------------------------------------TTTAGCAAGGATTGCGAGGCTGAAAAGATTGT
GCAGAATGCAAATGGCGATGGTGGCATGGAAATGTTGAGGGATGGTGAAGCTGAAACTGGG---AATAATTGCAACGGTA
ACACCATAGGAGGTTCTGGAGAAAAAGATGACACTAC---AGATGGCAGATGTGAAGAAGGCAGGGCTGAAAAAGATGCA
GAAAATGCTGGTGACTGTGAACCTGAAGAATCTGAAACTAATGAACCA------GAAGCAGAAGTAAAAGATGTGAAATC
TAAGGAAGCCAGTGGCAATGAGATTACCCTATCCC--ATGGTGCTAACTAAATGTGGCAAAACAAAATAGATGCTAGGCA
ACATGATTACTGAAGCGAGACGCG---GATGATGGTCGAGCGGAAGATTCTGAAGGCAGTACAAGCACCAAAATTGATGT
AGGTTGAAGCGCCTTTGTGGACGATGTGAAAACTGATGTAGGATAGTTTATGGAGGATTAGATTTCCATGCGGACTGTAG
TATC---AGGTTAGGAAATGGACAGAATGTTGTATAAATTGTGCTTGACAT-----------------------------
----------GCTTGTTGTACCGACCTTCCTTGTTTAGCTTGAAGAGTCTTTCCTTTTTCCTTGCTTGACTTGATGATTA
GCTC------TTTTCTTGTCCAGAACTGCTGCTTTACTTGGTGACAAGGATGGGCGGGCGGACGGACGGACGGCCTGGAT
TGGTCTGACATGGCAGTAATAGACGGTTGTCCAATGTGACAGGTGGAACATACTTATCGACTGACCAACGGCTGGCTTGG
CTCCACGTTCACAGCTCCATCCCTTCTTATCCGCGCAATCCAACGGACCGGACCCAGCCAAGCCATTCCCCACCACCCTC
TCCCAGGTCCCCGCTGCCAACCCTCCACCATCTCCTCTCCTCTCCTCTTCTTGTTGCACTGCACTGCAC--TCTCCAAAC
ATTGATTTCCAACTTTCCGTACAAGTGTCCTTCCTTCCAGTTAAGTTCACCAC---------------------------
-T---------TGCTTCTTGATTTGAGAC--ACAGATCGAGGAGGAGGAGCCATGCCGGAGTCGGACAATGACTCCGGCG
GGCCGAGCAACACCGGCGGGGAGGGGGAGCTGTCGTCGCCGCGGGAGCAGGACCGCTTCCTGCCCATCGCCAACGTCAGC
CGCATCATGAAGAAGGCGCTCCCGGCCAACGCCAAGATCAGCAAGGACGCCAAGGAGACGGTGCAGGAGTGCGTCTCCGA
GTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCATCAACGGCGACGACCTGC
TCTGGGCCATGACCACCCTCGGCTTCGAGGACTATGTCGACCCGCTCAAGCACTACCTCCACAAGTTCCGTGAGATCGAG
GGCGAGAGGGCCGCCGCCACGTCAACGTCAACGTCAACCACGCCCGACATGCCAAGAAACAACAACAACAATGCCACCGG
TTACGCCGACGCCCC---------------------------GGGAGGCATGATGATGATGGGGCAGCCCATGTACGGCT
C---GCCGCCGCCGCCACAACAGCAGCAGCAGCACCAACATCAGATTGCAATGGGAGGGAGAGCGGGCTTTCCCTATCTC
GGAGGCGG---------CGGCGGGTCGTCGTCATCGTCGGGGTTCGGACGGAAAGAGTGACATCTTTTCTTTTCTTTTCT
TTTCTT-----TTTGAGCTGACCAAAGTGAGTGATTTCAACATATGTTCCTCTCTTGGATGAAGCCTCCTGTAGCTT---
--------AAATCCATTCAGCACAGTGAGGAATACTTGTTCTACCCACGTTGCTGAAGCCTTTTTTTTCAACTCTTCCGC
TCTCCCCTCGCAAATCAGTTTTCTTTTGCTTATGCGGTTGCCTCTACGTTGTATA-----------------TATGCTGA
GCTATGGGGGTACCCAACAAGGTTTTTAAGGGGAAGGTGCTGCCCGATAAGTTAAAATAAAGTGAAGCGATGTATGGTGA
TATCTACTCTGGTGAAGTAACACAAGCGAAATTTGGAGCCTGCATTCAGTATGTATGTCATCAATCAAAATATATAAATT
GAACAATCTGCCAGTTCCCTTTGAAAGCAACTATATACTAGCCAATTCGCCATAAAAGCTCGAGTTACCGAGAAAATGTT
GGCTATGCTAAGCAGTTTCTACTTCACTTCACGGTTCGGACATGCTAAGTTACTAGCAAACGAACAAACAAACTGCCTCG
TCGAGCGTTCACTCTCAACATGTTTTCAAATAATGTCGTCTTTCAGAATCCACAATTTGCCATAAATACCAATATATTGA
TGTTAAAAGAACTCATTATAGGAACCGTGCGACCTACCAATC--------------------------------------
-----------------------------------------------------------------TAGTACTTTGGAAAA
CTTCAAATGGAAAAGGCGAAGTAAACTCTTGAAAGATAACCAATACTTTCAACCTGAAAACCGAGTCAGGATGGCCGAGT
GGTCTAAGGCGCCAGACTCGAGTTCTGCTCCTCCTACAAACCTTAACAATTGTTTTCCTTGTTTTGCTCTCCAATGGAGA
AAGAAGAAACTAGTTTCATCAGTCCTCAATCCATTTTGCACCAAGACCAGCTCTTCCTGCTTTATTGGTAGACTTGATTA
TGTAAGTATTTTGATTTGTCACCCCACAAGTTTGATTTCTCAGTATTTTGCCGCAACCATCCATGTGTACCTCATTGATT
ACCTTTTTAATTACTTGTAAGTACCTAAGTATGCATAAACTTCCCAACATTTTCCTTCGATGGGTAGAGCTTCCATTCAG
AATGGGGAAGACACTAGTTTGCATGAACAACAAGTGGAAAAAACAAGAACAAGACAGCTATCACTGCAGCAAAAAAAACA
GACCCACGACAAATTTAATTTCAGCATCTATCAGTGGGATGAAGACACAACTTCTAGGTACATGTCAAAACAATAATAAA
GGCACTCAAGTTCATTCAGTGTCGGAAACAACAGCGCGAGCCATGTCCGGCCATGTTCCTCATTATGTCTCCTGTTGTCA
CATGTGTTTTCAACTCTTCAGTTCTCTTGCAAATAGATTTTGCTTGATTTATGTGTTTGTCCCCTGCATCATGTACTACT
ATGTGAACCTACCGACAAGTTAAAAGAAATGAAATGATTTAACCGGATGTCTACTCTAGTGAAGTTCCAGAGGTATGTAT
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>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------------------S----
------S--------------------S---------S---------------------S--------------S-----
-----------------------------------------------S----------------------S--S------
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----------S--------S----SS----------S-------------------------------------S-----
-S-----------------S----SSS-----------------------S----------S--S---------------
----------SS----S-------------------------S-------------------------------------
---------------------------------------S----------------------------------------
----------------------------------------S---------------------------------------
------------------------S-------S-----------------------------------------------
-----------------S------------SS-------------------S---------S-------------S----
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------------------------------------------------------S-----------S-SSS--------S
-----S--------------------------------------S-----SSSSS-------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------------------S---
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------------------------------------------------------------------------------S-
-------------------------------------------S------------------------------------
---------------------------------------S----SS-SSSS-SSSSSS----------S-----------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
-SSS--------S--S---S------------------------S-----------------------------------
------S--S-S--S--------------S--S---------------S-------------------------------
------SSSSS---------------------------------------------------------------------
-----S-----------------------------------S--------------------------------------
-------------------------S---SS-SSS-S---S-SS-S-SS-SSS--SS-SSSSSSSS-SSSS-S-SSSSSS
S-S---SSS-SSSSSSSS--SSSSS-S-S---S--S--------------------------------------------
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----------------S----------S--------------S---S-SSS-S--SSS-SSSSSS-S--SSSSSSSSS--
---------------------------------------------------------------SS-----------S--S
---------------SSSSS-S--SSSS---S-S-S--SS--S-S-S-S-S-SSS-SSS-SS-SS--SSS--S-SS-SS-
-----SSSSSSSSSS---SSS-S-SSSS-S-SSSSSSSSSSSS-SSSSS-SSSS-S-S--SSS--S-----S---SSSS-
S-SSSS--------------------------------------------------------------------------
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-------------S------------S-----------------------------------------------------
----S----S---S--------------------S---------------------S----------------S------
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--SSSSSSSSSSSS--------------------
--SS--S---------------------------------------------S---------------------------
--------------------------S--------------S-----------------------S----S--S---S-S
-----------------SS------S-------------S------------------------S------S-S------
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>forward_451
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-------------------------------ATGGTCGAGCGGAAGATTCC-----------------------------
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>reverse_2068
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-------------------------------------------------------------------ACCTGGGAAGCTC
TCCATGA-------------------------------------------------------------------------
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