Multiple sequence alignment - TraesCS3B01G008200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G008200 chr3B 100.000 2543 0 0 1 2543 4207806 4205264 0.000000e+00 4697.0
1 TraesCS3B01G008200 chr3B 94.600 463 20 4 2084 2543 5061764 5061304 0.000000e+00 712.0
2 TraesCS3B01G008200 chr3A 92.685 1162 47 17 651 1779 7164208 7165364 0.000000e+00 1640.0
3 TraesCS3B01G008200 chr3A 92.128 470 22 3 194 650 334784493 334784960 0.000000e+00 649.0
4 TraesCS3B01G008200 chr3A 92.623 122 9 0 2096 2217 7159555 7159676 2.600000e-40 176.0
5 TraesCS3B01G008200 chr3A 93.860 114 2 3 1921 2030 7165467 7165579 1.560000e-37 167.0
6 TraesCS3B01G008200 chr3A 100.000 33 0 0 2063 2095 7165711 7165743 7.600000e-06 62.1
7 TraesCS3B01G008200 chr3A 90.000 40 4 0 2492 2531 7166906 7166945 5.000000e-03 52.8
8 TraesCS3B01G008200 chr1B 92.537 469 19 4 195 650 108867095 108867560 0.000000e+00 658.0
9 TraesCS3B01G008200 chr1B 89.776 313 13 4 357 656 27678646 27678340 1.430000e-102 383.0
10 TraesCS3B01G008200 chr1B 81.250 192 21 9 1798 1989 487312287 487312111 9.490000e-30 141.0
11 TraesCS3B01G008200 chr2B 92.291 467 22 2 197 650 702728458 702727993 0.000000e+00 651.0
12 TraesCS3B01G008200 chr2B 92.896 183 13 0 1 183 704875670 704875488 1.500000e-67 267.0
13 TraesCS3B01G008200 chr4A 92.275 466 22 2 198 650 403172218 403171754 0.000000e+00 649.0
14 TraesCS3B01G008200 chr1A 90.244 451 40 4 201 650 480589059 480588612 1.010000e-163 586.0
15 TraesCS3B01G008200 chr1A 86.667 195 9 6 1830 2020 15505662 15505843 1.540000e-47 200.0
16 TraesCS3B01G008200 chr1A 97.143 35 1 0 2063 2097 21617392 21617358 2.730000e-05 60.2
17 TraesCS3B01G008200 chr1A 96.970 33 0 1 2063 2094 15505972 15506004 1.000000e-03 54.7
18 TraesCS3B01G008200 chr7D 89.670 455 40 7 201 653 101035677 101036126 7.890000e-160 573.0
19 TraesCS3B01G008200 chr7D 81.818 121 14 6 698 814 308586623 308586507 7.490000e-16 95.3
20 TraesCS3B01G008200 chr7D 100.000 29 0 0 2066 2094 22081378 22081406 1.000000e-03 54.7
21 TraesCS3B01G008200 chr3D 88.696 460 40 8 198 650 234811100 234810646 3.700000e-153 551.0
22 TraesCS3B01G008200 chr3D 91.362 301 18 6 2084 2382 1871975 1871681 3.050000e-109 405.0
23 TraesCS3B01G008200 chr3D 91.154 260 12 3 2226 2483 1870871 1870621 2.420000e-90 342.0
24 TraesCS3B01G008200 chr1D 88.067 419 40 6 206 617 226730433 226730018 2.940000e-134 488.0
25 TraesCS3B01G008200 chr5A 87.239 431 42 7 226 650 134098262 134098685 1.770000e-131 479.0
26 TraesCS3B01G008200 chr7A 84.119 403 55 8 258 654 735723822 735723423 5.130000e-102 381.0
27 TraesCS3B01G008200 chr4B 90.311 289 10 4 376 650 615385036 615385320 1.860000e-96 363.0
28 TraesCS3B01G008200 chr7B 78.834 463 72 14 203 653 213900866 213900418 3.200000e-74 289.0
29 TraesCS3B01G008200 chr7B 95.556 45 2 0 748 792 418447862 418447818 3.510000e-09 73.1
30 TraesCS3B01G008200 chr5D 79.861 432 54 12 223 650 375468986 375469388 4.140000e-73 285.0
31 TraesCS3B01G008200 chr5D 97.059 34 0 1 2062 2094 345882141 345882108 3.530000e-04 56.5
32 TraesCS3B01G008200 chr6B 92.350 183 14 0 1 183 36601234 36601052 6.980000e-66 261.0
33 TraesCS3B01G008200 chr4D 85.106 94 10 4 701 792 508473006 508473097 2.690000e-15 93.5
34 TraesCS3B01G008200 chr4D 83.750 80 12 1 711 789 417835891 417835970 9.760000e-10 75.0
35 TraesCS3B01G008200 chr6D 97.059 34 0 1 2063 2095 28759171 28759138 3.530000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G008200 chr3B 4205264 4207806 2542 True 4697.000 4697 100.00000 1 2543 1 chr3B.!!$R1 2542
1 TraesCS3B01G008200 chr3A 7164208 7166945 2737 False 480.475 1640 94.13625 651 2531 4 chr3A.!!$F3 1880
2 TraesCS3B01G008200 chr3D 1870621 1871975 1354 True 373.500 405 91.25800 2084 2483 2 chr3D.!!$R2 399

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.028505 GCCTGTGCTAATCGTGCATG 59.971 55.0 0.0 0.0 42.69 4.06 F
977 1009 0.038159 AGACAGCAACGACACCTAGC 60.038 55.0 0.0 0.0 0.00 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 1397 0.103572 CGGTAATGTAGTCCCCACCG 59.896 60.0 0.00 0.0 42.41 4.94 R
1826 1858 0.179124 GCTGTGTCGATCCAGACTCC 60.179 60.0 15.94 0.0 41.47 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.435586 GCAGCCGAGCTCACACAT 60.436 61.111 15.40 0.00 36.40 3.21
36 37 2.459442 GCAGCCGAGCTCACACATC 61.459 63.158 15.40 0.00 36.40 3.06
37 38 1.812922 CAGCCGAGCTCACACATCC 60.813 63.158 15.40 0.00 36.40 3.51
38 39 2.512515 GCCGAGCTCACACATCCC 60.513 66.667 15.40 0.00 0.00 3.85
39 40 2.202797 CCGAGCTCACACATCCCG 60.203 66.667 15.40 0.00 0.00 5.14
40 41 2.887568 CGAGCTCACACATCCCGC 60.888 66.667 15.40 0.00 0.00 6.13
41 42 2.265739 GAGCTCACACATCCCGCA 59.734 61.111 9.40 0.00 0.00 5.69
42 43 1.153289 GAGCTCACACATCCCGCAT 60.153 57.895 9.40 0.00 0.00 4.73
43 44 1.153289 AGCTCACACATCCCGCATC 60.153 57.895 0.00 0.00 0.00 3.91
44 45 2.528743 GCTCACACATCCCGCATCG 61.529 63.158 0.00 0.00 0.00 3.84
45 46 2.511373 TCACACATCCCGCATCGC 60.511 61.111 0.00 0.00 0.00 4.58
46 47 3.576356 CACACATCCCGCATCGCC 61.576 66.667 0.00 0.00 0.00 5.54
47 48 4.094646 ACACATCCCGCATCGCCA 62.095 61.111 0.00 0.00 0.00 5.69
48 49 3.576356 CACATCCCGCATCGCCAC 61.576 66.667 0.00 0.00 0.00 5.01
49 50 4.856801 ACATCCCGCATCGCCACC 62.857 66.667 0.00 0.00 0.00 4.61
50 51 4.552365 CATCCCGCATCGCCACCT 62.552 66.667 0.00 0.00 0.00 4.00
51 52 4.241555 ATCCCGCATCGCCACCTC 62.242 66.667 0.00 0.00 0.00 3.85
63 64 3.423154 CACCTCGGCCGCTTGTTC 61.423 66.667 23.51 0.00 0.00 3.18
64 65 4.699522 ACCTCGGCCGCTTGTTCC 62.700 66.667 23.51 0.00 0.00 3.62
71 72 4.394712 CCGCTTGTTCCCCTCGCT 62.395 66.667 0.00 0.00 0.00 4.93
72 73 2.358737 CGCTTGTTCCCCTCGCTT 60.359 61.111 0.00 0.00 0.00 4.68
73 74 1.966451 CGCTTGTTCCCCTCGCTTT 60.966 57.895 0.00 0.00 0.00 3.51
74 75 1.876664 GCTTGTTCCCCTCGCTTTC 59.123 57.895 0.00 0.00 0.00 2.62
75 76 0.606673 GCTTGTTCCCCTCGCTTTCT 60.607 55.000 0.00 0.00 0.00 2.52
76 77 1.160137 CTTGTTCCCCTCGCTTTCTG 58.840 55.000 0.00 0.00 0.00 3.02
77 78 0.250727 TTGTTCCCCTCGCTTTCTGG 60.251 55.000 0.00 0.00 0.00 3.86
78 79 2.041115 GTTCCCCTCGCTTTCTGGC 61.041 63.158 0.00 0.00 0.00 4.85
87 88 3.191539 CTTTCTGGCGGCGCTCTC 61.192 66.667 32.30 15.98 0.00 3.20
88 89 3.939837 CTTTCTGGCGGCGCTCTCA 62.940 63.158 32.30 19.93 0.00 3.27
89 90 3.315142 TTTCTGGCGGCGCTCTCAT 62.315 57.895 32.30 0.00 0.00 2.90
90 91 4.519437 TCTGGCGGCGCTCTCATG 62.519 66.667 32.30 14.67 0.00 3.07
94 95 4.233635 GCGGCGCTCTCATGCAAG 62.234 66.667 26.86 0.00 0.00 4.01
95 96 3.570638 CGGCGCTCTCATGCAAGG 61.571 66.667 7.64 0.00 0.00 3.61
96 97 2.124983 GGCGCTCTCATGCAAGGA 60.125 61.111 7.64 0.00 0.00 3.36
97 98 2.467826 GGCGCTCTCATGCAAGGAC 61.468 63.158 7.64 0.00 0.00 3.85
98 99 2.806856 GCGCTCTCATGCAAGGACG 61.807 63.158 0.00 0.00 0.00 4.79
99 100 2.806856 CGCTCTCATGCAAGGACGC 61.807 63.158 0.00 0.00 0.00 5.19
100 101 2.806856 GCTCTCATGCAAGGACGCG 61.807 63.158 3.53 3.53 33.35 6.01
101 102 2.125552 TCTCATGCAAGGACGCGG 60.126 61.111 12.47 0.00 33.35 6.46
102 103 3.197790 CTCATGCAAGGACGCGGG 61.198 66.667 12.47 0.00 33.35 6.13
120 121 4.552365 CGCCATGGCCGGACAGAT 62.552 66.667 30.79 0.00 37.98 2.90
121 122 2.592861 GCCATGGCCGGACAGATC 60.593 66.667 27.24 2.31 34.56 2.75
122 123 2.280389 CCATGGCCGGACAGATCG 60.280 66.667 18.96 3.65 0.00 3.69
123 124 2.796193 CCATGGCCGGACAGATCGA 61.796 63.158 18.96 0.00 0.00 3.59
124 125 1.300465 CATGGCCGGACAGATCGAG 60.300 63.158 18.96 0.00 0.00 4.04
125 126 2.502492 ATGGCCGGACAGATCGAGG 61.502 63.158 18.96 0.00 0.00 4.63
126 127 2.833582 GGCCGGACAGATCGAGGA 60.834 66.667 5.05 0.00 0.00 3.71
127 128 2.725008 GCCGGACAGATCGAGGAG 59.275 66.667 5.05 0.00 0.00 3.69
128 129 1.824329 GCCGGACAGATCGAGGAGA 60.824 63.158 5.05 0.00 0.00 3.71
129 130 1.791103 GCCGGACAGATCGAGGAGAG 61.791 65.000 5.05 0.00 0.00 3.20
130 131 1.652012 CGGACAGATCGAGGAGAGC 59.348 63.158 0.00 0.00 35.01 4.09
131 132 1.098129 CGGACAGATCGAGGAGAGCA 61.098 60.000 0.00 0.00 37.82 4.26
132 133 0.383949 GGACAGATCGAGGAGAGCAC 59.616 60.000 0.00 0.00 37.82 4.40
133 134 0.028770 GACAGATCGAGGAGAGCACG 59.971 60.000 0.00 0.00 37.82 5.34
134 135 1.299014 CAGATCGAGGAGAGCACGC 60.299 63.158 0.00 0.00 37.82 5.34
135 136 1.750780 AGATCGAGGAGAGCACGCA 60.751 57.895 0.00 0.00 37.82 5.24
136 137 1.106351 AGATCGAGGAGAGCACGCAT 61.106 55.000 0.00 0.00 37.82 4.73
137 138 0.662970 GATCGAGGAGAGCACGCATC 60.663 60.000 0.00 0.00 34.89 3.91
138 139 2.081425 ATCGAGGAGAGCACGCATCC 62.081 60.000 5.41 5.41 0.00 3.51
139 140 2.895680 GAGGAGAGCACGCATCCA 59.104 61.111 13.74 0.00 35.45 3.41
140 141 1.219124 GAGGAGAGCACGCATCCAA 59.781 57.895 13.74 0.00 35.45 3.53
141 142 0.809241 GAGGAGAGCACGCATCCAAG 60.809 60.000 13.74 0.00 35.45 3.61
142 143 1.817099 GGAGAGCACGCATCCAAGG 60.817 63.158 8.07 0.00 33.08 3.61
143 144 1.817099 GAGAGCACGCATCCAAGGG 60.817 63.158 0.00 0.00 0.00 3.95
144 145 2.244117 GAGAGCACGCATCCAAGGGA 62.244 60.000 0.00 0.00 35.55 4.20
145 146 1.377202 GAGCACGCATCCAAGGGAA 60.377 57.895 0.00 0.00 34.34 3.97
146 147 1.372087 GAGCACGCATCCAAGGGAAG 61.372 60.000 0.00 0.00 34.34 3.46
147 148 2.409870 GCACGCATCCAAGGGAAGG 61.410 63.158 0.00 0.00 34.34 3.46
148 149 1.299648 CACGCATCCAAGGGAAGGA 59.700 57.895 0.00 0.00 39.97 3.36
149 150 0.745845 CACGCATCCAAGGGAAGGAG 60.746 60.000 0.00 0.00 38.83 3.69
150 151 1.821332 CGCATCCAAGGGAAGGAGC 60.821 63.158 0.00 0.00 38.83 4.70
151 152 1.454663 GCATCCAAGGGAAGGAGCC 60.455 63.158 0.00 0.00 38.83 4.70
152 153 2.001803 CATCCAAGGGAAGGAGCCA 58.998 57.895 0.00 0.00 38.83 4.75
153 154 0.332632 CATCCAAGGGAAGGAGCCAA 59.667 55.000 0.00 0.00 38.83 4.52
154 155 1.063417 CATCCAAGGGAAGGAGCCAAT 60.063 52.381 0.00 0.00 38.83 3.16
155 156 0.332632 TCCAAGGGAAGGAGCCAATG 59.667 55.000 0.00 0.00 0.00 2.82
156 157 1.325476 CCAAGGGAAGGAGCCAATGC 61.325 60.000 0.00 0.00 37.95 3.56
157 158 1.379044 AAGGGAAGGAGCCAATGCG 60.379 57.895 0.00 0.00 44.33 4.73
158 159 2.044946 GGGAAGGAGCCAATGCGT 60.045 61.111 0.00 0.00 44.33 5.24
159 160 1.678970 GGGAAGGAGCCAATGCGTT 60.679 57.895 0.00 0.00 44.33 4.84
160 161 1.250840 GGGAAGGAGCCAATGCGTTT 61.251 55.000 0.00 0.00 44.33 3.60
161 162 1.459450 GGAAGGAGCCAATGCGTTTA 58.541 50.000 0.00 0.00 44.33 2.01
162 163 1.816224 GGAAGGAGCCAATGCGTTTAA 59.184 47.619 0.00 0.00 44.33 1.52
163 164 2.230266 GGAAGGAGCCAATGCGTTTAAA 59.770 45.455 0.00 0.00 44.33 1.52
164 165 3.305744 GGAAGGAGCCAATGCGTTTAAAA 60.306 43.478 0.00 0.00 44.33 1.52
165 166 3.575965 AGGAGCCAATGCGTTTAAAAG 57.424 42.857 0.00 0.00 44.33 2.27
166 167 2.231235 AGGAGCCAATGCGTTTAAAAGG 59.769 45.455 3.30 0.00 44.33 3.11
167 168 2.230266 GGAGCCAATGCGTTTAAAAGGA 59.770 45.455 3.30 0.28 44.33 3.36
168 169 3.242518 GAGCCAATGCGTTTAAAAGGAC 58.757 45.455 3.30 0.00 44.33 3.85
169 170 2.890945 AGCCAATGCGTTTAAAAGGACT 59.109 40.909 3.30 0.00 44.33 3.85
170 171 4.076394 AGCCAATGCGTTTAAAAGGACTA 58.924 39.130 3.30 0.00 44.33 2.59
171 172 4.082949 AGCCAATGCGTTTAAAAGGACTAC 60.083 41.667 3.30 0.00 44.33 2.73
172 173 4.399978 CCAATGCGTTTAAAAGGACTACG 58.600 43.478 3.30 0.00 35.48 3.51
173 174 4.399978 CAATGCGTTTAAAAGGACTACGG 58.600 43.478 3.30 0.00 33.17 4.02
174 175 2.415776 TGCGTTTAAAAGGACTACGGG 58.584 47.619 3.30 0.00 33.17 5.28
175 176 2.224257 TGCGTTTAAAAGGACTACGGGT 60.224 45.455 3.30 0.00 33.17 5.28
176 177 2.807967 GCGTTTAAAAGGACTACGGGTT 59.192 45.455 3.30 0.00 33.17 4.11
177 178 3.364267 GCGTTTAAAAGGACTACGGGTTG 60.364 47.826 3.30 0.00 33.17 3.77
178 179 4.057432 CGTTTAAAAGGACTACGGGTTGA 58.943 43.478 0.00 0.00 0.00 3.18
179 180 4.511082 CGTTTAAAAGGACTACGGGTTGAA 59.489 41.667 0.00 0.00 0.00 2.69
180 181 5.179929 CGTTTAAAAGGACTACGGGTTGAAT 59.820 40.000 0.00 0.00 0.00 2.57
181 182 6.368516 CGTTTAAAAGGACTACGGGTTGAATA 59.631 38.462 0.00 0.00 0.00 1.75
182 183 7.521529 GTTTAAAAGGACTACGGGTTGAATAC 58.478 38.462 0.00 0.00 0.00 1.89
183 184 4.895668 AAAGGACTACGGGTTGAATACA 57.104 40.909 0.00 0.00 0.00 2.29
184 185 4.467198 AAGGACTACGGGTTGAATACAG 57.533 45.455 0.00 0.00 0.00 2.74
185 186 2.764572 AGGACTACGGGTTGAATACAGG 59.235 50.000 0.00 0.00 0.00 4.00
186 187 2.159000 GGACTACGGGTTGAATACAGGG 60.159 54.545 0.00 0.00 0.00 4.45
187 188 2.498885 GACTACGGGTTGAATACAGGGT 59.501 50.000 0.00 0.00 0.00 4.34
188 189 2.498885 ACTACGGGTTGAATACAGGGTC 59.501 50.000 0.00 0.00 0.00 4.46
189 190 0.616891 ACGGGTTGAATACAGGGTCC 59.383 55.000 0.00 0.00 0.00 4.46
190 191 0.909623 CGGGTTGAATACAGGGTCCT 59.090 55.000 0.00 0.00 0.00 3.85
191 192 1.280998 CGGGTTGAATACAGGGTCCTT 59.719 52.381 0.00 0.00 0.00 3.36
192 193 2.290705 CGGGTTGAATACAGGGTCCTTT 60.291 50.000 0.00 0.00 0.00 3.11
193 194 3.089284 GGGTTGAATACAGGGTCCTTTG 58.911 50.000 0.00 0.00 0.00 2.77
194 195 3.499745 GGGTTGAATACAGGGTCCTTTGT 60.500 47.826 5.18 5.18 0.00 2.83
195 196 3.506067 GGTTGAATACAGGGTCCTTTGTG 59.494 47.826 9.10 0.00 0.00 3.33
196 197 4.142038 GTTGAATACAGGGTCCTTTGTGT 58.858 43.478 9.10 1.41 0.00 3.72
197 198 4.015872 TGAATACAGGGTCCTTTGTGTC 57.984 45.455 9.10 7.36 0.00 3.67
198 199 3.392947 TGAATACAGGGTCCTTTGTGTCA 59.607 43.478 9.10 9.20 0.00 3.58
199 200 3.703001 ATACAGGGTCCTTTGTGTCAG 57.297 47.619 9.10 0.00 0.00 3.51
200 201 1.507140 ACAGGGTCCTTTGTGTCAGA 58.493 50.000 0.00 0.00 0.00 3.27
201 202 1.141053 ACAGGGTCCTTTGTGTCAGAC 59.859 52.381 0.00 0.00 0.00 3.51
202 203 0.765510 AGGGTCCTTTGTGTCAGACC 59.234 55.000 0.00 0.00 46.65 3.85
203 204 0.765510 GGGTCCTTTGTGTCAGACCT 59.234 55.000 7.87 0.00 46.58 3.85
204 205 1.543429 GGGTCCTTTGTGTCAGACCTG 60.543 57.143 7.87 0.00 46.58 4.00
205 206 1.543429 GGTCCTTTGTGTCAGACCTGG 60.543 57.143 0.00 0.00 44.46 4.45
206 207 0.108585 TCCTTTGTGTCAGACCTGGC 59.891 55.000 0.00 0.00 35.37 4.85
207 208 0.890996 CCTTTGTGTCAGACCTGGCC 60.891 60.000 0.00 0.00 33.48 5.36
208 209 0.179020 CTTTGTGTCAGACCTGGCCA 60.179 55.000 4.71 4.71 33.48 5.36
209 210 0.257328 TTTGTGTCAGACCTGGCCAA 59.743 50.000 7.01 1.11 33.48 4.52
210 211 0.257328 TTGTGTCAGACCTGGCCAAA 59.743 50.000 7.01 0.00 33.48 3.28
211 212 0.465460 TGTGTCAGACCTGGCCAAAC 60.465 55.000 7.01 0.54 33.48 2.93
212 213 1.227823 TGTCAGACCTGGCCAAACG 60.228 57.895 7.01 0.00 33.48 3.60
213 214 1.966451 GTCAGACCTGGCCAAACGG 60.966 63.158 7.01 7.56 0.00 4.44
214 215 2.672996 CAGACCTGGCCAAACGGG 60.673 66.667 7.01 7.12 42.81 5.28
249 250 4.506255 GGCCCGGCCTGTGCTAAT 62.506 66.667 22.31 0.00 46.69 1.73
250 251 2.902343 GCCCGGCCTGTGCTAATC 60.902 66.667 0.00 0.00 37.74 1.75
251 252 2.588877 CCCGGCCTGTGCTAATCG 60.589 66.667 0.00 0.00 37.74 3.34
252 253 2.186903 CCGGCCTGTGCTAATCGT 59.813 61.111 0.00 0.00 37.74 3.73
253 254 2.173669 CCGGCCTGTGCTAATCGTG 61.174 63.158 0.00 0.00 37.74 4.35
254 255 2.813179 CGGCCTGTGCTAATCGTGC 61.813 63.158 0.00 0.00 37.74 5.34
255 256 1.745115 GGCCTGTGCTAATCGTGCA 60.745 57.895 0.00 0.00 38.19 4.57
256 257 1.097547 GGCCTGTGCTAATCGTGCAT 61.098 55.000 0.00 0.00 42.69 3.96
257 258 0.028505 GCCTGTGCTAATCGTGCATG 59.971 55.000 0.00 0.00 42.69 4.06
258 259 0.659427 CCTGTGCTAATCGTGCATGG 59.341 55.000 5.98 0.00 42.69 3.66
259 260 0.028505 CTGTGCTAATCGTGCATGGC 59.971 55.000 5.98 1.82 42.69 4.40
260 261 1.356624 GTGCTAATCGTGCATGGCC 59.643 57.895 5.98 0.00 42.69 5.36
261 262 1.823470 TGCTAATCGTGCATGGCCC 60.823 57.895 5.98 0.00 35.31 5.80
262 263 2.896801 GCTAATCGTGCATGGCCCG 61.897 63.158 5.98 0.00 0.00 6.13
263 264 2.203139 TAATCGTGCATGGCCCGG 60.203 61.111 5.98 0.00 0.00 5.73
285 286 3.737172 GCTCGCCATGGCACGTTT 61.737 61.111 34.93 0.00 42.06 3.60
286 287 2.395360 GCTCGCCATGGCACGTTTA 61.395 57.895 34.93 12.35 42.06 2.01
287 288 1.917782 GCTCGCCATGGCACGTTTAA 61.918 55.000 34.93 10.65 42.06 1.52
288 289 0.732571 CTCGCCATGGCACGTTTAAT 59.267 50.000 34.93 0.00 42.06 1.40
289 290 1.937223 CTCGCCATGGCACGTTTAATA 59.063 47.619 34.93 8.29 42.06 0.98
290 291 1.937223 TCGCCATGGCACGTTTAATAG 59.063 47.619 34.93 15.37 42.06 1.73
291 292 1.596954 CGCCATGGCACGTTTAATAGC 60.597 52.381 34.93 4.60 42.06 2.97
295 296 3.068574 GGCACGTTTAATAGCCGGA 57.931 52.632 5.05 0.00 37.41 5.14
296 297 0.654160 GGCACGTTTAATAGCCGGAC 59.346 55.000 5.05 0.00 37.41 4.79
297 298 0.654160 GCACGTTTAATAGCCGGACC 59.346 55.000 5.05 0.00 0.00 4.46
298 299 0.925466 CACGTTTAATAGCCGGACCG 59.075 55.000 5.05 6.99 0.00 4.79
299 300 0.532115 ACGTTTAATAGCCGGACCGT 59.468 50.000 13.94 0.00 0.00 4.83
300 301 0.925466 CGTTTAATAGCCGGACCGTG 59.075 55.000 13.94 5.55 0.00 4.94
301 302 0.654160 GTTTAATAGCCGGACCGTGC 59.346 55.000 13.94 15.54 0.00 5.34
302 303 0.462403 TTTAATAGCCGGACCGTGCC 60.462 55.000 19.61 6.12 0.00 5.01
303 304 1.615165 TTAATAGCCGGACCGTGCCA 61.615 55.000 19.61 10.08 0.00 4.92
304 305 1.404479 TAATAGCCGGACCGTGCCAT 61.404 55.000 19.61 11.70 0.00 4.40
305 306 2.940890 AATAGCCGGACCGTGCCATG 62.941 60.000 19.61 2.86 0.00 3.66
350 351 4.598257 CAGGCACGGACTGGTTAG 57.402 61.111 0.00 0.00 34.53 2.34
351 352 1.671742 CAGGCACGGACTGGTTAGT 59.328 57.895 0.00 0.00 40.66 2.24
352 353 0.892755 CAGGCACGGACTGGTTAGTA 59.107 55.000 0.00 0.00 37.25 1.82
353 354 1.274167 CAGGCACGGACTGGTTAGTAA 59.726 52.381 0.00 0.00 37.25 2.24
354 355 1.972795 AGGCACGGACTGGTTAGTAAA 59.027 47.619 0.00 0.00 37.25 2.01
355 356 2.570302 AGGCACGGACTGGTTAGTAAAT 59.430 45.455 0.00 0.00 37.25 1.40
356 357 2.676342 GGCACGGACTGGTTAGTAAATG 59.324 50.000 0.00 0.00 37.25 2.32
357 358 2.676342 GCACGGACTGGTTAGTAAATGG 59.324 50.000 0.00 0.00 37.25 3.16
358 359 3.267483 CACGGACTGGTTAGTAAATGGG 58.733 50.000 0.00 0.00 37.25 4.00
359 360 2.285977 CGGACTGGTTAGTAAATGGGC 58.714 52.381 0.00 0.00 37.25 5.36
360 361 2.651455 GGACTGGTTAGTAAATGGGCC 58.349 52.381 0.00 0.00 37.25 5.80
361 362 2.285977 GACTGGTTAGTAAATGGGCCG 58.714 52.381 0.00 0.00 37.25 6.13
362 363 1.064979 ACTGGTTAGTAAATGGGCCGG 60.065 52.381 0.00 0.00 34.74 6.13
363 364 0.394625 TGGTTAGTAAATGGGCCGGC 60.395 55.000 21.18 21.18 0.00 6.13
364 365 0.106868 GGTTAGTAAATGGGCCGGCT 60.107 55.000 28.56 8.66 0.00 5.52
365 366 1.306148 GTTAGTAAATGGGCCGGCTC 58.694 55.000 28.56 25.91 0.00 4.70
366 367 0.179067 TTAGTAAATGGGCCGGCTCG 60.179 55.000 28.56 0.00 0.00 5.03
367 368 1.044231 TAGTAAATGGGCCGGCTCGA 61.044 55.000 28.56 14.09 0.00 4.04
368 369 1.227853 GTAAATGGGCCGGCTCGAT 60.228 57.895 28.56 15.93 0.00 3.59
369 370 1.227823 TAAATGGGCCGGCTCGATG 60.228 57.895 28.56 0.00 0.00 3.84
370 371 2.674563 TAAATGGGCCGGCTCGATGG 62.675 60.000 28.56 0.00 0.00 3.51
378 379 2.188469 GGCTCGATGGCCCGTTTA 59.812 61.111 0.00 0.00 45.92 2.01
379 380 1.887707 GGCTCGATGGCCCGTTTAG 60.888 63.158 0.00 0.00 45.92 1.85
380 381 2.534903 GCTCGATGGCCCGTTTAGC 61.535 63.158 0.00 0.00 0.00 3.09
381 382 1.153449 CTCGATGGCCCGTTTAGCA 60.153 57.895 0.00 0.00 0.00 3.49
382 383 1.429148 CTCGATGGCCCGTTTAGCAC 61.429 60.000 0.00 0.00 0.00 4.40
390 391 2.742372 CGTTTAGCACGCTGGGCT 60.742 61.111 10.07 10.07 43.37 5.19
391 392 2.870372 GTTTAGCACGCTGGGCTG 59.130 61.111 14.30 0.00 42.62 4.85
392 393 3.055719 TTTAGCACGCTGGGCTGC 61.056 61.111 14.30 9.91 42.62 5.25
393 394 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
397 398 3.367743 CACGCTGGGCTGCACATT 61.368 61.111 4.43 0.00 0.00 2.71
398 399 2.598394 ACGCTGGGCTGCACATTT 60.598 55.556 4.43 0.00 0.00 2.32
399 400 2.202395 ACGCTGGGCTGCACATTTT 61.202 52.632 4.43 0.00 0.00 1.82
400 401 1.444895 CGCTGGGCTGCACATTTTC 60.445 57.895 4.43 0.00 0.00 2.29
401 402 1.667151 GCTGGGCTGCACATTTTCA 59.333 52.632 4.43 0.00 0.00 2.69
402 403 0.389426 GCTGGGCTGCACATTTTCAG 60.389 55.000 4.43 0.00 0.00 3.02
407 408 3.117589 CTGCACATTTTCAGCCTGC 57.882 52.632 0.00 0.00 0.00 4.85
408 409 0.601558 CTGCACATTTTCAGCCTGCT 59.398 50.000 0.00 0.00 0.00 4.24
409 410 0.315886 TGCACATTTTCAGCCTGCTG 59.684 50.000 12.91 12.91 44.86 4.41
410 411 0.389426 GCACATTTTCAGCCTGCTGG 60.389 55.000 18.38 5.03 43.75 4.85
411 412 0.245539 CACATTTTCAGCCTGCTGGG 59.754 55.000 18.38 1.66 43.75 4.45
420 421 3.875390 CCTGCTGGGCTGGTTTTT 58.125 55.556 0.71 0.00 41.68 1.94
421 422 3.050089 CCTGCTGGGCTGGTTTTTA 57.950 52.632 0.71 0.00 41.68 1.52
422 423 0.890683 CCTGCTGGGCTGGTTTTTAG 59.109 55.000 0.71 0.00 41.68 1.85
423 424 0.890683 CTGCTGGGCTGGTTTTTAGG 59.109 55.000 0.00 0.00 0.00 2.69
424 425 1.184970 TGCTGGGCTGGTTTTTAGGC 61.185 55.000 0.00 0.00 39.76 3.93
430 431 3.801114 GGCTGGTTTTTAGGCCTATTG 57.199 47.619 14.74 0.49 41.20 1.90
431 432 3.361786 GGCTGGTTTTTAGGCCTATTGA 58.638 45.455 14.74 0.00 41.20 2.57
432 433 3.381590 GGCTGGTTTTTAGGCCTATTGAG 59.618 47.826 14.74 5.46 41.20 3.02
433 434 3.181486 GCTGGTTTTTAGGCCTATTGAGC 60.181 47.826 14.74 11.99 0.00 4.26
434 435 4.273318 CTGGTTTTTAGGCCTATTGAGCT 58.727 43.478 14.74 0.00 0.00 4.09
435 436 5.437060 CTGGTTTTTAGGCCTATTGAGCTA 58.563 41.667 14.74 2.14 0.00 3.32
436 437 6.013554 TGGTTTTTAGGCCTATTGAGCTAT 57.986 37.500 14.74 0.00 0.00 2.97
437 438 7.144234 TGGTTTTTAGGCCTATTGAGCTATA 57.856 36.000 14.74 0.00 0.00 1.31
438 439 7.755618 TGGTTTTTAGGCCTATTGAGCTATAT 58.244 34.615 14.74 0.00 0.00 0.86
439 440 8.224720 TGGTTTTTAGGCCTATTGAGCTATATT 58.775 33.333 14.74 0.00 0.00 1.28
440 441 9.078990 GGTTTTTAGGCCTATTGAGCTATATTT 57.921 33.333 14.74 0.00 0.00 1.40
444 445 9.959721 TTTAGGCCTATTGAGCTATATTTTAGG 57.040 33.333 14.74 0.00 0.00 2.69
445 446 7.575499 AGGCCTATTGAGCTATATTTTAGGT 57.425 36.000 1.29 0.00 0.00 3.08
446 447 8.680820 AGGCCTATTGAGCTATATTTTAGGTA 57.319 34.615 1.29 0.00 0.00 3.08
447 448 9.285359 AGGCCTATTGAGCTATATTTTAGGTAT 57.715 33.333 1.29 0.00 0.00 2.73
503 504 2.981400 AAATTAAACAGGTCGTGCCG 57.019 45.000 0.00 0.00 43.70 5.69
504 505 1.886886 AATTAAACAGGTCGTGCCGT 58.113 45.000 0.00 0.00 43.70 5.68
505 506 1.153353 ATTAAACAGGTCGTGCCGTG 58.847 50.000 0.00 0.00 43.70 4.94
506 507 1.500512 TTAAACAGGTCGTGCCGTGC 61.501 55.000 0.00 0.00 43.70 5.34
567 568 3.122971 GGCACGACCCGTTTAGCC 61.123 66.667 4.10 4.10 38.32 3.93
568 569 3.122971 GCACGACCCGTTTAGCCC 61.123 66.667 0.00 0.00 38.32 5.19
569 570 2.812178 CACGACCCGTTTAGCCCG 60.812 66.667 0.00 0.00 38.32 6.13
570 571 3.305516 ACGACCCGTTTAGCCCGT 61.306 61.111 0.00 0.00 36.35 5.28
571 572 2.812178 CGACCCGTTTAGCCCGTG 60.812 66.667 0.00 0.00 0.00 4.94
572 573 3.122971 GACCCGTTTAGCCCGTGC 61.123 66.667 0.00 0.00 37.95 5.34
573 574 4.710167 ACCCGTTTAGCCCGTGCC 62.710 66.667 0.00 0.00 38.69 5.01
574 575 4.708386 CCCGTTTAGCCCGTGCCA 62.708 66.667 0.00 0.00 38.69 4.92
575 576 2.437716 CCGTTTAGCCCGTGCCAT 60.438 61.111 0.00 0.00 38.69 4.40
576 577 2.760159 CCGTTTAGCCCGTGCCATG 61.760 63.158 0.00 0.00 38.69 3.66
577 578 2.489751 GTTTAGCCCGTGCCATGC 59.510 61.111 0.00 0.00 38.69 4.06
578 579 2.753849 TTTAGCCCGTGCCATGCC 60.754 61.111 0.00 0.00 38.69 4.40
579 580 3.280938 TTTAGCCCGTGCCATGCCT 62.281 57.895 0.00 0.00 38.69 4.75
580 581 3.993614 TTAGCCCGTGCCATGCCTG 62.994 63.158 0.00 0.00 38.69 4.85
623 624 4.379243 CTCGCGGGCTGGTCTGTT 62.379 66.667 6.13 0.00 0.00 3.16
624 625 3.883744 CTCGCGGGCTGGTCTGTTT 62.884 63.158 6.13 0.00 0.00 2.83
625 626 2.047655 CGCGGGCTGGTCTGTTTA 60.048 61.111 0.00 0.00 0.00 2.01
626 627 2.100631 CGCGGGCTGGTCTGTTTAG 61.101 63.158 0.00 0.00 0.00 1.85
627 628 2.399356 GCGGGCTGGTCTGTTTAGC 61.399 63.158 0.00 0.00 36.74 3.09
630 631 3.890674 GCTGGTCTGTTTAGCCCG 58.109 61.111 0.00 0.00 0.00 6.13
631 632 1.745489 GCTGGTCTGTTTAGCCCGG 60.745 63.158 0.00 0.00 31.34 5.73
632 633 1.745489 CTGGTCTGTTTAGCCCGGC 60.745 63.158 0.00 0.00 0.00 6.13
633 634 2.437895 GGTCTGTTTAGCCCGGCC 60.438 66.667 5.55 0.00 0.00 6.13
634 635 2.437895 GTCTGTTTAGCCCGGCCC 60.438 66.667 5.55 0.00 0.00 5.80
635 636 4.090588 TCTGTTTAGCCCGGCCCG 62.091 66.667 5.55 0.00 0.00 6.13
636 637 4.404098 CTGTTTAGCCCGGCCCGT 62.404 66.667 5.55 0.00 0.00 5.28
637 638 3.912745 CTGTTTAGCCCGGCCCGTT 62.913 63.158 5.55 0.00 0.00 4.44
638 639 2.674033 GTTTAGCCCGGCCCGTTT 60.674 61.111 5.55 0.00 0.00 3.60
639 640 2.673687 TTTAGCCCGGCCCGTTTG 60.674 61.111 5.55 0.00 0.00 2.93
647 648 4.733542 GGCCCGTTTGCCCAGCTA 62.734 66.667 0.00 0.00 46.11 3.32
648 649 2.440247 GCCCGTTTGCCCAGCTAT 60.440 61.111 0.00 0.00 0.00 2.97
649 650 1.153046 GCCCGTTTGCCCAGCTATA 60.153 57.895 0.00 0.00 0.00 1.31
659 660 4.137116 TGCCCAGCTATACTTTGTGTAG 57.863 45.455 0.00 0.00 34.24 2.74
668 669 6.589139 AGCTATACTTTGTGTAGGAACGAAAC 59.411 38.462 0.00 0.00 34.24 2.78
714 715 5.914898 AAAAGGATTGTGGGCTGTATTAC 57.085 39.130 0.00 0.00 0.00 1.89
727 728 5.479306 GGCTGTATTACTGAGAAACACAGA 58.521 41.667 11.20 0.00 38.55 3.41
731 732 5.542635 TGTATTACTGAGAAACACAGAGGGT 59.457 40.000 0.00 0.00 38.55 4.34
732 733 4.602340 TTACTGAGAAACACAGAGGGTC 57.398 45.455 0.00 0.00 38.55 4.46
737 739 3.578716 TGAGAAACACAGAGGGTCTTAGG 59.421 47.826 0.00 0.00 0.00 2.69
749 751 3.064931 GGGTCTTAGGAAAAGTGTCACG 58.935 50.000 0.00 0.00 0.00 4.35
928 960 5.408299 TCATAAGGATTTTCTCGTGTGTGTG 59.592 40.000 0.00 0.00 0.00 3.82
929 961 3.194005 AGGATTTTCTCGTGTGTGTGT 57.806 42.857 0.00 0.00 0.00 3.72
930 962 4.330944 AGGATTTTCTCGTGTGTGTGTA 57.669 40.909 0.00 0.00 0.00 2.90
931 963 4.056050 AGGATTTTCTCGTGTGTGTGTAC 58.944 43.478 0.00 0.00 0.00 2.90
932 964 3.185797 GGATTTTCTCGTGTGTGTGTACC 59.814 47.826 0.00 0.00 0.00 3.34
936 968 4.859304 TTCTCGTGTGTGTGTACCTTAT 57.141 40.909 0.00 0.00 0.00 1.73
977 1009 0.038159 AGACAGCAACGACACCTAGC 60.038 55.000 0.00 0.00 0.00 3.42
1127 1159 2.163211 GCAAGAAGACCAAGAATGCCTC 59.837 50.000 0.00 0.00 0.00 4.70
1144 1176 1.221466 CTCGTTGTGCATGTCCGTGT 61.221 55.000 0.00 0.00 0.00 4.49
1312 1344 1.270625 TGTTAAACGTCTGCCTCTGGG 60.271 52.381 0.00 0.00 0.00 4.45
1365 1397 1.444553 CGTCCGCACTCTCCTTCAC 60.445 63.158 0.00 0.00 0.00 3.18
1367 1399 2.125912 CCGCACTCTCCTTCACGG 60.126 66.667 0.00 0.00 0.00 4.94
1391 1423 1.202177 GGACTACATTACCGCGTCGAA 60.202 52.381 4.92 0.00 0.00 3.71
1392 1424 2.518949 GACTACATTACCGCGTCGAAA 58.481 47.619 4.92 0.00 0.00 3.46
1396 1428 0.293723 CATTACCGCGTCGAAACTCG 59.706 55.000 4.92 0.00 42.10 4.18
1406 1438 2.340577 CGTCGAAACTCGTGTTGGATAC 59.659 50.000 3.24 0.46 41.35 2.24
1416 1448 0.035820 TGTTGGATACCAAGGGCGTC 60.036 55.000 3.32 0.00 44.82 5.19
1525 1557 3.056313 GCAGCCGAACTCATTGCCC 62.056 63.158 0.00 0.00 0.00 5.36
1586 1618 5.236478 ACAAGCTCCCGTCAATAATTAATCG 59.764 40.000 0.00 0.00 0.00 3.34
1676 1708 8.393366 CACATAGAATGTCAATCTTACCAACTG 58.607 37.037 0.00 0.00 42.70 3.16
1693 1725 6.696441 CCAACTGGGTAACTCTAGTACTAG 57.304 45.833 21.87 21.87 34.56 2.57
1723 1755 3.488047 CCAAAAGCGACCAAGCATGATAG 60.488 47.826 0.00 0.00 40.15 2.08
1724 1756 2.698855 AAGCGACCAAGCATGATAGT 57.301 45.000 0.00 0.00 40.15 2.12
1737 1769 3.485877 GCATGATAGTTTGTGTTCCGAGC 60.486 47.826 0.00 0.00 0.00 5.03
1738 1770 3.678056 TGATAGTTTGTGTTCCGAGCT 57.322 42.857 0.00 0.00 0.00 4.09
1739 1771 3.585862 TGATAGTTTGTGTTCCGAGCTC 58.414 45.455 2.73 2.73 0.00 4.09
1743 1775 0.250295 TTTGTGTTCCGAGCTCTGGG 60.250 55.000 19.88 12.01 0.00 4.45
1769 1801 1.523032 CGTATCGGCAAACCTCCCC 60.523 63.158 0.00 0.00 0.00 4.81
1779 1811 2.051692 CAAACCTCCCCCGTATATCCA 58.948 52.381 0.00 0.00 0.00 3.41
1780 1812 2.025636 AACCTCCCCCGTATATCCAG 57.974 55.000 0.00 0.00 0.00 3.86
1782 1814 0.617820 CCTCCCCCGTATATCCAGGG 60.618 65.000 3.71 3.71 44.67 4.45
1783 1815 0.116541 CTCCCCCGTATATCCAGGGT 59.883 60.000 8.66 0.00 43.58 4.34
1785 1817 0.908180 CCCCCGTATATCCAGGGTCC 60.908 65.000 8.66 0.00 43.58 4.46
1786 1818 0.178915 CCCCGTATATCCAGGGTCCA 60.179 60.000 8.66 0.00 43.58 4.02
1788 1820 1.267121 CCGTATATCCAGGGTCCAGG 58.733 60.000 0.00 0.00 0.00 4.45
1789 1821 0.608640 CGTATATCCAGGGTCCAGGC 59.391 60.000 0.00 0.00 0.00 4.85
1790 1822 0.984995 GTATATCCAGGGTCCAGGCC 59.015 60.000 0.00 0.00 0.00 5.19
1805 1837 3.011517 GCCCAGGGCTCTCCTCAA 61.012 66.667 24.99 0.00 46.12 3.02
1809 1841 1.409381 CCCAGGGCTCTCCTCAATTTC 60.409 57.143 0.00 0.00 46.12 2.17
1810 1842 1.409381 CCAGGGCTCTCCTCAATTTCC 60.409 57.143 0.00 0.00 46.12 3.13
1811 1843 0.922626 AGGGCTCTCCTCAATTTCCC 59.077 55.000 0.00 0.00 44.06 3.97
1812 1844 0.464554 GGGCTCTCCTCAATTTCCCG 60.465 60.000 0.00 0.00 0.00 5.14
1813 1845 0.541863 GGCTCTCCTCAATTTCCCGA 59.458 55.000 0.00 0.00 0.00 5.14
1814 1846 1.065418 GGCTCTCCTCAATTTCCCGAA 60.065 52.381 0.00 0.00 0.00 4.30
1815 1847 2.422093 GGCTCTCCTCAATTTCCCGAAT 60.422 50.000 0.00 0.00 0.00 3.34
1816 1848 2.615912 GCTCTCCTCAATTTCCCGAATG 59.384 50.000 0.00 0.00 0.00 2.67
1817 1849 3.682718 GCTCTCCTCAATTTCCCGAATGA 60.683 47.826 0.00 0.00 0.00 2.57
1818 1850 3.873910 TCTCCTCAATTTCCCGAATGAC 58.126 45.455 0.00 0.00 0.00 3.06
1819 1851 2.945668 CTCCTCAATTTCCCGAATGACC 59.054 50.000 0.00 0.00 0.00 4.02
1820 1852 2.024414 CCTCAATTTCCCGAATGACCC 58.976 52.381 0.00 0.00 0.00 4.46
1821 1853 2.024414 CTCAATTTCCCGAATGACCCC 58.976 52.381 0.00 0.00 0.00 4.95
1822 1854 1.638589 TCAATTTCCCGAATGACCCCT 59.361 47.619 0.00 0.00 0.00 4.79
1823 1855 2.042433 TCAATTTCCCGAATGACCCCTT 59.958 45.455 0.00 0.00 0.00 3.95
1825 1857 0.035820 TTTCCCGAATGACCCCTTCG 60.036 55.000 0.00 0.00 43.82 3.79
1839 1871 0.752009 CCTTCGGGAGTCTGGATCGA 60.752 60.000 0.00 0.00 37.25 3.59
1840 1872 0.382515 CTTCGGGAGTCTGGATCGAC 59.617 60.000 0.00 0.00 0.00 4.20
1842 1874 1.030488 TCGGGAGTCTGGATCGACAC 61.030 60.000 3.94 0.00 36.38 3.67
1844 1876 0.457851 GGGAGTCTGGATCGACACAG 59.542 60.000 10.99 10.99 36.38 3.66
1845 1877 0.179124 GGAGTCTGGATCGACACAGC 60.179 60.000 12.11 8.30 36.38 4.40
1846 1878 0.179124 GAGTCTGGATCGACACAGCC 60.179 60.000 12.11 2.71 36.38 4.85
1848 1880 0.459237 GTCTGGATCGACACAGCCTG 60.459 60.000 12.11 0.00 34.76 4.85
1849 1881 1.812922 CTGGATCGACACAGCCTGC 60.813 63.158 5.38 0.00 0.00 4.85
1851 1883 2.887568 GATCGACACAGCCTGCCG 60.888 66.667 0.00 0.00 0.00 5.69
1879 1911 3.067461 GGATCGATCTATCCATCTTCCCG 59.933 52.174 23.96 0.00 44.26 5.14
1881 1913 3.348119 TCGATCTATCCATCTTCCCGAG 58.652 50.000 0.00 0.00 0.00 4.63
1882 1914 3.009143 TCGATCTATCCATCTTCCCGAGA 59.991 47.826 0.00 0.00 39.13 4.04
1883 1915 3.127895 CGATCTATCCATCTTCCCGAGAC 59.872 52.174 0.00 0.00 37.17 3.36
1884 1916 2.505405 TCTATCCATCTTCCCGAGACG 58.495 52.381 0.00 0.00 37.17 4.18
1885 1917 2.105993 TCTATCCATCTTCCCGAGACGA 59.894 50.000 0.00 0.00 37.17 4.20
1886 1918 1.776662 ATCCATCTTCCCGAGACGAA 58.223 50.000 0.00 0.00 37.17 3.85
1887 1919 0.815734 TCCATCTTCCCGAGACGAAC 59.184 55.000 0.00 0.00 37.17 3.95
1888 1920 0.818296 CCATCTTCCCGAGACGAACT 59.182 55.000 0.00 0.00 37.17 3.01
1889 1921 1.469940 CCATCTTCCCGAGACGAACTG 60.470 57.143 0.00 0.00 37.17 3.16
1890 1922 1.472878 CATCTTCCCGAGACGAACTGA 59.527 52.381 0.00 0.00 37.17 3.41
1891 1923 1.612676 TCTTCCCGAGACGAACTGAA 58.387 50.000 0.00 0.00 0.00 3.02
1892 1924 1.268899 TCTTCCCGAGACGAACTGAAC 59.731 52.381 0.00 0.00 0.00 3.18
1893 1925 1.269998 CTTCCCGAGACGAACTGAACT 59.730 52.381 0.00 0.00 0.00 3.01
1894 1926 0.596577 TCCCGAGACGAACTGAACTG 59.403 55.000 0.00 0.00 0.00 3.16
1895 1927 0.596577 CCCGAGACGAACTGAACTGA 59.403 55.000 0.00 0.00 0.00 3.41
1896 1928 1.666311 CCCGAGACGAACTGAACTGAC 60.666 57.143 0.00 0.00 0.00 3.51
1897 1929 1.319172 CGAGACGAACTGAACTGACG 58.681 55.000 0.00 0.00 0.00 4.35
1898 1930 1.687628 GAGACGAACTGAACTGACGG 58.312 55.000 0.00 0.00 0.00 4.79
1899 1931 1.266175 GAGACGAACTGAACTGACGGA 59.734 52.381 0.00 0.00 0.00 4.69
1900 1932 1.679680 AGACGAACTGAACTGACGGAA 59.320 47.619 0.00 0.00 0.00 4.30
1901 1933 2.052157 GACGAACTGAACTGACGGAAG 58.948 52.381 0.00 0.00 0.00 3.46
1936 1968 2.829458 GAGACGGAGGCTAGCGGT 60.829 66.667 9.00 3.80 0.00 5.68
1938 1970 3.450115 GACGGAGGCTAGCGGTGT 61.450 66.667 9.00 4.39 0.00 4.16
1961 1996 5.591643 TGTCTAGTTTGTTTGATCGCTTC 57.408 39.130 0.00 0.00 0.00 3.86
1962 1997 5.053811 TGTCTAGTTTGTTTGATCGCTTCA 58.946 37.500 0.00 0.00 0.00 3.02
2030 2065 6.917533 CATGAGGAATTTCCATACCTTATGC 58.082 40.000 17.57 0.00 39.61 3.14
2032 2067 4.740902 AGGAATTTCCATACCTTATGCCC 58.259 43.478 17.57 0.00 39.61 5.36
2033 2068 3.506067 GGAATTTCCATACCTTATGCCCG 59.494 47.826 10.67 0.00 36.28 6.13
2034 2069 2.649531 TTTCCATACCTTATGCCCGG 57.350 50.000 0.00 0.00 34.85 5.73
2035 2070 1.809133 TTCCATACCTTATGCCCGGA 58.191 50.000 0.73 0.00 34.85 5.14
2036 2071 1.348064 TCCATACCTTATGCCCGGAG 58.652 55.000 0.73 0.00 34.85 4.63
2037 2072 0.324943 CCATACCTTATGCCCGGAGG 59.675 60.000 0.73 3.15 39.56 4.30
2048 2158 3.439008 CCGGAGGCGTTTTGGTTT 58.561 55.556 0.00 0.00 46.14 3.27
2051 2161 0.596341 CGGAGGCGTTTTGGTTTTGG 60.596 55.000 0.00 0.00 0.00 3.28
2059 2169 3.786635 CGTTTTGGTTTTGGTGAATGGA 58.213 40.909 0.00 0.00 0.00 3.41
2095 2229 1.401552 ACAATTGGATTCGATGCACGG 59.598 47.619 10.83 0.00 42.82 4.94
2097 2231 1.447317 ATTGGATTCGATGCACGGCC 61.447 55.000 0.00 0.00 42.82 6.13
2098 2232 2.513666 GGATTCGATGCACGGCCA 60.514 61.111 2.24 0.00 42.82 5.36
2150 2903 2.499685 GCGACTTCCCGGCATACT 59.500 61.111 0.00 0.00 0.00 2.12
2196 2949 1.141645 GAACACATCACAACGGCGTA 58.858 50.000 15.20 0.00 0.00 4.42
2199 2952 1.270274 ACACATCACAACGGCGTACTA 59.730 47.619 15.20 0.00 0.00 1.82
2202 2955 1.858458 CATCACAACGGCGTACTATGG 59.142 52.381 15.20 2.35 0.00 2.74
2206 2959 0.529119 CAACGGCGTACTATGGGGAC 60.529 60.000 15.20 0.00 0.00 4.46
2259 3012 0.101579 GGAGACGAGCTACCTCTTGC 59.898 60.000 8.72 0.00 35.90 4.01
2284 3037 3.253188 CGACCTGGTGTTTGATGAAATGT 59.747 43.478 2.82 0.00 0.00 2.71
2325 4040 2.038295 AGAAGAAGAAGGCAGAGGTGTG 59.962 50.000 0.00 0.00 0.00 3.82
2326 4041 1.722034 AGAAGAAGGCAGAGGTGTGA 58.278 50.000 0.00 0.00 0.00 3.58
2392 4107 1.719780 GACACGTCAGCTAGAAAACCG 59.280 52.381 0.00 0.00 0.00 4.44
2413 4128 2.160721 TCCTAGTGTCATCTGGGACC 57.839 55.000 4.23 0.00 39.56 4.46
2414 4129 1.361197 TCCTAGTGTCATCTGGGACCA 59.639 52.381 0.00 0.00 39.56 4.02
2415 4130 2.187958 CCTAGTGTCATCTGGGACCAA 58.812 52.381 0.00 0.00 38.15 3.67
2416 4131 2.093447 CCTAGTGTCATCTGGGACCAAC 60.093 54.545 0.00 0.00 38.15 3.77
2417 4132 1.734655 AGTGTCATCTGGGACCAACT 58.265 50.000 0.00 0.00 36.97 3.16
2418 4133 2.902608 AGTGTCATCTGGGACCAACTA 58.097 47.619 0.00 0.00 36.97 2.24
2432 4147 1.871039 CCAACTACCAAGTGTGTTCGG 59.129 52.381 0.00 0.00 35.62 4.30
2470 4239 5.772521 ACGAAATCTTTTCAAGGGAACATG 58.227 37.500 0.00 0.00 31.35 3.21
2483 4252 0.734889 GAACATGAACTCCGCCATGG 59.265 55.000 7.63 7.63 43.16 3.66
2484 4253 0.680921 AACATGAACTCCGCCATGGG 60.681 55.000 15.13 3.37 43.16 4.00
2486 4255 1.097547 CATGAACTCCGCCATGGGTC 61.098 60.000 15.13 0.00 37.19 4.46
2487 4256 2.511600 GAACTCCGCCATGGGTCG 60.512 66.667 15.13 9.45 38.76 4.79
2490 4259 2.202932 CTCCGCCATGGGTCGAAG 60.203 66.667 15.13 0.00 38.76 3.79
2491 4260 3.740128 CTCCGCCATGGGTCGAAGG 62.740 68.421 15.13 0.00 38.76 3.46
2492 4261 3.781307 CCGCCATGGGTCGAAGGA 61.781 66.667 15.13 0.00 0.00 3.36
2493 4262 2.511600 CGCCATGGGTCGAAGGAC 60.512 66.667 15.13 0.00 42.66 3.85
2494 4263 2.990479 GCCATGGGTCGAAGGACT 59.010 61.111 15.13 0.00 42.97 3.85
2495 4264 1.450312 GCCATGGGTCGAAGGACTG 60.450 63.158 15.13 0.00 42.97 3.51
2496 4265 1.221840 CCATGGGTCGAAGGACTGG 59.778 63.158 2.85 0.00 42.97 4.00
2497 4266 1.264749 CCATGGGTCGAAGGACTGGA 61.265 60.000 2.85 0.00 42.97 3.86
2498 4267 0.613260 CATGGGTCGAAGGACTGGAA 59.387 55.000 0.00 0.00 42.97 3.53
2499 4268 1.003118 CATGGGTCGAAGGACTGGAAA 59.997 52.381 0.00 0.00 42.97 3.13
2500 4269 1.358152 TGGGTCGAAGGACTGGAAAT 58.642 50.000 0.00 0.00 42.97 2.17
2501 4270 1.702957 TGGGTCGAAGGACTGGAAATT 59.297 47.619 0.00 0.00 42.97 1.82
2502 4271 2.290071 TGGGTCGAAGGACTGGAAATTC 60.290 50.000 0.00 0.00 42.97 2.17
2531 4300 8.047413 ACCTCCGTTTCGAATTATAAAATGTT 57.953 30.769 0.00 0.00 0.00 2.71
2532 4301 8.517056 ACCTCCGTTTCGAATTATAAAATGTTT 58.483 29.630 0.00 0.00 0.00 2.83
2533 4302 9.349145 CCTCCGTTTCGAATTATAAAATGTTTT 57.651 29.630 0.00 0.00 0.00 2.43
2535 4304 9.130312 TCCGTTTCGAATTATAAAATGTTTTGG 57.870 29.630 0.00 0.00 0.00 3.28
2536 4305 9.130312 CCGTTTCGAATTATAAAATGTTTTGGA 57.870 29.630 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.435586 ATGTGTGAGCTCGGCTGC 60.436 61.111 9.64 0.00 39.88 5.25
19 20 1.812922 GGATGTGTGAGCTCGGCTG 60.813 63.158 9.64 0.00 39.88 4.85
20 21 2.581354 GGATGTGTGAGCTCGGCT 59.419 61.111 9.64 0.00 43.88 5.52
21 22 2.512515 GGGATGTGTGAGCTCGGC 60.513 66.667 9.64 5.16 0.00 5.54
22 23 2.202797 CGGGATGTGTGAGCTCGG 60.203 66.667 9.64 0.00 0.00 4.63
23 24 2.887568 GCGGGATGTGTGAGCTCG 60.888 66.667 9.64 0.00 0.00 5.03
24 25 1.153289 ATGCGGGATGTGTGAGCTC 60.153 57.895 6.82 6.82 0.00 4.09
25 26 1.153289 GATGCGGGATGTGTGAGCT 60.153 57.895 0.00 0.00 0.00 4.09
26 27 2.528743 CGATGCGGGATGTGTGAGC 61.529 63.158 0.00 0.00 0.00 4.26
27 28 2.528743 GCGATGCGGGATGTGTGAG 61.529 63.158 0.00 0.00 0.00 3.51
28 29 2.511373 GCGATGCGGGATGTGTGA 60.511 61.111 0.00 0.00 0.00 3.58
29 30 3.576356 GGCGATGCGGGATGTGTG 61.576 66.667 0.00 0.00 0.00 3.82
30 31 4.094646 TGGCGATGCGGGATGTGT 62.095 61.111 0.00 0.00 0.00 3.72
31 32 3.576356 GTGGCGATGCGGGATGTG 61.576 66.667 0.00 0.00 0.00 3.21
32 33 4.856801 GGTGGCGATGCGGGATGT 62.857 66.667 0.00 0.00 0.00 3.06
33 34 4.552365 AGGTGGCGATGCGGGATG 62.552 66.667 0.00 0.00 0.00 3.51
34 35 4.241555 GAGGTGGCGATGCGGGAT 62.242 66.667 0.00 0.00 0.00 3.85
46 47 3.423154 GAACAAGCGGCCGAGGTG 61.423 66.667 33.48 24.26 0.00 4.00
47 48 4.699522 GGAACAAGCGGCCGAGGT 62.700 66.667 33.48 20.31 0.00 3.85
54 55 3.901797 AAGCGAGGGGAACAAGCGG 62.902 63.158 0.00 0.00 0.00 5.52
55 56 1.912371 GAAAGCGAGGGGAACAAGCG 61.912 60.000 0.00 0.00 0.00 4.68
56 57 0.606673 AGAAAGCGAGGGGAACAAGC 60.607 55.000 0.00 0.00 0.00 4.01
57 58 1.160137 CAGAAAGCGAGGGGAACAAG 58.840 55.000 0.00 0.00 0.00 3.16
58 59 0.250727 CCAGAAAGCGAGGGGAACAA 60.251 55.000 0.00 0.00 0.00 2.83
59 60 1.374947 CCAGAAAGCGAGGGGAACA 59.625 57.895 0.00 0.00 0.00 3.18
60 61 2.041115 GCCAGAAAGCGAGGGGAAC 61.041 63.158 0.00 0.00 0.00 3.62
61 62 2.351276 GCCAGAAAGCGAGGGGAA 59.649 61.111 0.00 0.00 0.00 3.97
70 71 3.191539 GAGAGCGCCGCCAGAAAG 61.192 66.667 4.98 0.00 0.00 2.62
71 72 3.315142 ATGAGAGCGCCGCCAGAAA 62.315 57.895 4.98 0.00 0.00 2.52
72 73 3.774528 ATGAGAGCGCCGCCAGAA 61.775 61.111 4.98 0.00 0.00 3.02
73 74 4.519437 CATGAGAGCGCCGCCAGA 62.519 66.667 4.98 0.00 0.00 3.86
77 78 4.233635 CTTGCATGAGAGCGCCGC 62.234 66.667 2.29 0.00 37.31 6.53
78 79 3.570638 CCTTGCATGAGAGCGCCG 61.571 66.667 2.29 0.00 37.31 6.46
79 80 2.124983 TCCTTGCATGAGAGCGCC 60.125 61.111 2.29 0.00 37.31 6.53
80 81 2.806856 CGTCCTTGCATGAGAGCGC 61.807 63.158 0.00 0.00 37.31 5.92
81 82 2.806856 GCGTCCTTGCATGAGAGCG 61.807 63.158 0.00 0.00 37.31 5.03
82 83 2.806856 CGCGTCCTTGCATGAGAGC 61.807 63.158 0.00 3.16 34.15 4.09
83 84 2.169789 CCGCGTCCTTGCATGAGAG 61.170 63.158 4.92 0.00 34.15 3.20
84 85 2.125552 CCGCGTCCTTGCATGAGA 60.126 61.111 4.92 0.00 34.15 3.27
85 86 3.197790 CCCGCGTCCTTGCATGAG 61.198 66.667 4.92 0.00 34.15 2.90
104 105 2.592861 GATCTGTCCGGCCATGGC 60.593 66.667 29.47 29.47 41.06 4.40
105 106 2.280389 CGATCTGTCCGGCCATGG 60.280 66.667 7.63 7.63 0.00 3.66
106 107 1.300465 CTCGATCTGTCCGGCCATG 60.300 63.158 2.24 0.00 0.00 3.66
107 108 2.502492 CCTCGATCTGTCCGGCCAT 61.502 63.158 2.24 0.00 0.00 4.40
108 109 3.147595 CCTCGATCTGTCCGGCCA 61.148 66.667 2.24 0.00 0.00 5.36
109 110 2.833582 TCCTCGATCTGTCCGGCC 60.834 66.667 0.00 0.00 0.00 6.13
110 111 1.791103 CTCTCCTCGATCTGTCCGGC 61.791 65.000 0.00 0.00 0.00 6.13
111 112 1.791103 GCTCTCCTCGATCTGTCCGG 61.791 65.000 0.00 0.00 0.00 5.14
112 113 1.098129 TGCTCTCCTCGATCTGTCCG 61.098 60.000 0.00 0.00 0.00 4.79
113 114 0.383949 GTGCTCTCCTCGATCTGTCC 59.616 60.000 0.00 0.00 0.00 4.02
114 115 0.028770 CGTGCTCTCCTCGATCTGTC 59.971 60.000 0.00 0.00 32.48 3.51
115 116 1.999071 GCGTGCTCTCCTCGATCTGT 61.999 60.000 0.00 0.00 32.48 3.41
116 117 1.299014 GCGTGCTCTCCTCGATCTG 60.299 63.158 0.00 0.00 32.48 2.90
117 118 1.106351 ATGCGTGCTCTCCTCGATCT 61.106 55.000 0.00 0.00 32.48 2.75
118 119 0.662970 GATGCGTGCTCTCCTCGATC 60.663 60.000 0.00 0.00 32.48 3.69
119 120 1.361993 GATGCGTGCTCTCCTCGAT 59.638 57.895 0.00 0.00 32.48 3.59
120 121 2.775856 GGATGCGTGCTCTCCTCGA 61.776 63.158 6.74 0.00 32.48 4.04
121 122 2.279120 GGATGCGTGCTCTCCTCG 60.279 66.667 6.74 0.00 0.00 4.63
122 123 0.809241 CTTGGATGCGTGCTCTCCTC 60.809 60.000 12.90 0.00 0.00 3.71
123 124 1.220206 CTTGGATGCGTGCTCTCCT 59.780 57.895 12.90 0.00 0.00 3.69
124 125 1.817099 CCTTGGATGCGTGCTCTCC 60.817 63.158 0.00 6.97 0.00 3.71
125 126 1.817099 CCCTTGGATGCGTGCTCTC 60.817 63.158 0.00 0.00 0.00 3.20
126 127 1.841302 TTCCCTTGGATGCGTGCTCT 61.841 55.000 0.00 0.00 0.00 4.09
127 128 1.372087 CTTCCCTTGGATGCGTGCTC 61.372 60.000 0.00 0.00 0.00 4.26
128 129 1.377725 CTTCCCTTGGATGCGTGCT 60.378 57.895 0.00 0.00 0.00 4.40
129 130 2.409870 CCTTCCCTTGGATGCGTGC 61.410 63.158 0.00 0.00 0.00 5.34
130 131 0.745845 CTCCTTCCCTTGGATGCGTG 60.746 60.000 0.00 0.00 32.56 5.34
131 132 1.604378 CTCCTTCCCTTGGATGCGT 59.396 57.895 0.00 0.00 32.56 5.24
132 133 1.821332 GCTCCTTCCCTTGGATGCG 60.821 63.158 0.00 0.00 32.56 4.73
133 134 1.454663 GGCTCCTTCCCTTGGATGC 60.455 63.158 0.00 0.00 32.56 3.91
134 135 0.332632 TTGGCTCCTTCCCTTGGATG 59.667 55.000 0.00 0.00 32.56 3.51
135 136 1.063417 CATTGGCTCCTTCCCTTGGAT 60.063 52.381 0.00 0.00 32.56 3.41
136 137 0.332632 CATTGGCTCCTTCCCTTGGA 59.667 55.000 0.00 0.00 0.00 3.53
137 138 1.325476 GCATTGGCTCCTTCCCTTGG 61.325 60.000 0.00 0.00 36.96 3.61
138 139 1.660560 CGCATTGGCTCCTTCCCTTG 61.661 60.000 0.00 0.00 38.10 3.61
139 140 1.379044 CGCATTGGCTCCTTCCCTT 60.379 57.895 0.00 0.00 38.10 3.95
140 141 2.142292 AACGCATTGGCTCCTTCCCT 62.142 55.000 0.00 0.00 38.10 4.20
141 142 1.250840 AAACGCATTGGCTCCTTCCC 61.251 55.000 0.00 0.00 38.10 3.97
142 143 1.459450 TAAACGCATTGGCTCCTTCC 58.541 50.000 0.00 0.00 38.10 3.46
143 144 3.569250 TTTAAACGCATTGGCTCCTTC 57.431 42.857 0.00 0.00 38.10 3.46
144 145 3.306019 CCTTTTAAACGCATTGGCTCCTT 60.306 43.478 0.00 0.00 38.10 3.36
145 146 2.231235 CCTTTTAAACGCATTGGCTCCT 59.769 45.455 0.00 0.00 38.10 3.69
146 147 2.230266 TCCTTTTAAACGCATTGGCTCC 59.770 45.455 0.00 0.00 38.10 4.70
147 148 3.057526 AGTCCTTTTAAACGCATTGGCTC 60.058 43.478 0.00 0.00 38.10 4.70
148 149 2.890945 AGTCCTTTTAAACGCATTGGCT 59.109 40.909 0.00 0.00 38.10 4.75
149 150 3.297830 AGTCCTTTTAAACGCATTGGC 57.702 42.857 0.00 0.00 0.00 4.52
150 151 4.399978 CGTAGTCCTTTTAAACGCATTGG 58.600 43.478 0.00 0.00 0.00 3.16
151 152 4.399978 CCGTAGTCCTTTTAAACGCATTG 58.600 43.478 0.00 0.00 32.43 2.82
152 153 3.437741 CCCGTAGTCCTTTTAAACGCATT 59.562 43.478 0.00 0.00 32.43 3.56
153 154 3.004862 CCCGTAGTCCTTTTAAACGCAT 58.995 45.455 0.00 0.00 32.43 4.73
154 155 2.224257 ACCCGTAGTCCTTTTAAACGCA 60.224 45.455 0.00 0.00 32.43 5.24
155 156 2.416747 ACCCGTAGTCCTTTTAAACGC 58.583 47.619 0.00 0.00 32.43 4.84
156 157 4.057432 TCAACCCGTAGTCCTTTTAAACG 58.943 43.478 0.00 0.00 0.00 3.60
157 158 6.564709 ATTCAACCCGTAGTCCTTTTAAAC 57.435 37.500 0.00 0.00 0.00 2.01
158 159 7.222872 TGTATTCAACCCGTAGTCCTTTTAAA 58.777 34.615 0.00 0.00 0.00 1.52
159 160 6.767456 TGTATTCAACCCGTAGTCCTTTTAA 58.233 36.000 0.00 0.00 0.00 1.52
160 161 6.357579 TGTATTCAACCCGTAGTCCTTTTA 57.642 37.500 0.00 0.00 0.00 1.52
161 162 5.231702 TGTATTCAACCCGTAGTCCTTTT 57.768 39.130 0.00 0.00 0.00 2.27
162 163 4.323257 CCTGTATTCAACCCGTAGTCCTTT 60.323 45.833 0.00 0.00 0.00 3.11
163 164 3.197116 CCTGTATTCAACCCGTAGTCCTT 59.803 47.826 0.00 0.00 0.00 3.36
164 165 2.764572 CCTGTATTCAACCCGTAGTCCT 59.235 50.000 0.00 0.00 0.00 3.85
165 166 2.159000 CCCTGTATTCAACCCGTAGTCC 60.159 54.545 0.00 0.00 0.00 3.85
166 167 2.498885 ACCCTGTATTCAACCCGTAGTC 59.501 50.000 0.00 0.00 0.00 2.59
167 168 2.498885 GACCCTGTATTCAACCCGTAGT 59.501 50.000 0.00 0.00 0.00 2.73
168 169 2.159000 GGACCCTGTATTCAACCCGTAG 60.159 54.545 0.00 0.00 0.00 3.51
169 170 1.832998 GGACCCTGTATTCAACCCGTA 59.167 52.381 0.00 0.00 0.00 4.02
170 171 0.616891 GGACCCTGTATTCAACCCGT 59.383 55.000 0.00 0.00 0.00 5.28
171 172 0.909623 AGGACCCTGTATTCAACCCG 59.090 55.000 0.00 0.00 0.00 5.28
172 173 3.089284 CAAAGGACCCTGTATTCAACCC 58.911 50.000 0.00 0.00 0.00 4.11
173 174 3.506067 CACAAAGGACCCTGTATTCAACC 59.494 47.826 0.00 0.00 0.00 3.77
174 175 4.142038 ACACAAAGGACCCTGTATTCAAC 58.858 43.478 0.00 0.00 0.00 3.18
175 176 4.141367 TGACACAAAGGACCCTGTATTCAA 60.141 41.667 0.00 0.00 0.00 2.69
176 177 3.392947 TGACACAAAGGACCCTGTATTCA 59.607 43.478 0.00 1.46 0.00 2.57
177 178 4.003648 CTGACACAAAGGACCCTGTATTC 58.996 47.826 0.00 0.00 0.00 1.75
178 179 3.650942 TCTGACACAAAGGACCCTGTATT 59.349 43.478 0.00 0.00 0.00 1.89
179 180 3.008049 GTCTGACACAAAGGACCCTGTAT 59.992 47.826 2.24 0.00 0.00 2.29
180 181 2.367567 GTCTGACACAAAGGACCCTGTA 59.632 50.000 2.24 0.00 0.00 2.74
181 182 1.141053 GTCTGACACAAAGGACCCTGT 59.859 52.381 2.24 0.00 0.00 4.00
182 183 1.543429 GGTCTGACACAAAGGACCCTG 60.543 57.143 10.38 0.00 41.48 4.45
183 184 0.765510 GGTCTGACACAAAGGACCCT 59.234 55.000 10.38 0.00 41.48 4.34
184 185 0.765510 AGGTCTGACACAAAGGACCC 59.234 55.000 10.38 0.00 46.58 4.46
185 186 1.543429 CCAGGTCTGACACAAAGGACC 60.543 57.143 10.38 3.21 45.98 4.46
186 187 1.884235 CCAGGTCTGACACAAAGGAC 58.116 55.000 10.38 0.00 0.00 3.85
187 188 0.108585 GCCAGGTCTGACACAAAGGA 59.891 55.000 10.38 0.00 0.00 3.36
188 189 0.890996 GGCCAGGTCTGACACAAAGG 60.891 60.000 10.38 4.74 0.00 3.11
189 190 0.179020 TGGCCAGGTCTGACACAAAG 60.179 55.000 0.00 0.00 0.00 2.77
190 191 0.257328 TTGGCCAGGTCTGACACAAA 59.743 50.000 5.11 0.00 0.00 2.83
191 192 0.257328 TTTGGCCAGGTCTGACACAA 59.743 50.000 5.11 3.98 0.00 3.33
192 193 0.465460 GTTTGGCCAGGTCTGACACA 60.465 55.000 5.11 0.00 0.00 3.72
193 194 1.507141 CGTTTGGCCAGGTCTGACAC 61.507 60.000 5.11 0.00 0.00 3.67
194 195 1.227823 CGTTTGGCCAGGTCTGACA 60.228 57.895 5.11 0.00 0.00 3.58
195 196 1.966451 CCGTTTGGCCAGGTCTGAC 60.966 63.158 5.11 0.00 0.00 3.51
196 197 2.429930 CCGTTTGGCCAGGTCTGA 59.570 61.111 5.11 0.00 0.00 3.27
197 198 2.672996 CCCGTTTGGCCAGGTCTG 60.673 66.667 5.11 0.00 0.00 3.51
233 234 2.902343 GATTAGCACAGGCCGGGC 60.902 66.667 22.67 22.67 42.56 6.13
234 235 2.588877 CGATTAGCACAGGCCGGG 60.589 66.667 8.08 1.20 42.56 5.73
235 236 2.173669 CACGATTAGCACAGGCCGG 61.174 63.158 0.00 0.00 42.56 6.13
236 237 2.813179 GCACGATTAGCACAGGCCG 61.813 63.158 0.00 0.00 42.56 6.13
237 238 1.097547 ATGCACGATTAGCACAGGCC 61.098 55.000 0.00 0.00 45.95 5.19
238 239 0.028505 CATGCACGATTAGCACAGGC 59.971 55.000 0.00 0.00 45.95 4.85
239 240 0.659427 CCATGCACGATTAGCACAGG 59.341 55.000 0.00 0.00 45.95 4.00
240 241 0.028505 GCCATGCACGATTAGCACAG 59.971 55.000 0.00 0.00 45.95 3.66
241 242 1.375853 GGCCATGCACGATTAGCACA 61.376 55.000 0.00 0.00 45.95 4.57
242 243 1.356624 GGCCATGCACGATTAGCAC 59.643 57.895 0.00 0.00 45.95 4.40
244 245 3.034030 GGGCCATGCACGATTAGC 58.966 61.111 4.39 0.00 0.00 3.09
268 269 1.917782 TTAAACGTGCCATGGCGAGC 61.918 55.000 30.87 21.43 45.51 5.03
269 270 0.732571 ATTAAACGTGCCATGGCGAG 59.267 50.000 30.87 27.22 45.51 5.03
270 271 1.937223 CTATTAAACGTGCCATGGCGA 59.063 47.619 30.87 17.64 45.51 5.54
271 272 1.596954 GCTATTAAACGTGCCATGGCG 60.597 52.381 30.87 20.22 45.51 5.69
272 273 1.269051 GGCTATTAAACGTGCCATGGC 60.269 52.381 30.54 30.54 44.34 4.40
273 274 1.002900 CGGCTATTAAACGTGCCATGG 60.003 52.381 7.63 7.63 45.13 3.66
274 275 1.002900 CCGGCTATTAAACGTGCCATG 60.003 52.381 12.24 0.00 45.13 3.66
275 276 1.134340 TCCGGCTATTAAACGTGCCAT 60.134 47.619 12.24 0.00 45.13 4.40
276 277 0.249676 TCCGGCTATTAAACGTGCCA 59.750 50.000 12.24 0.00 45.13 4.92
277 278 0.654160 GTCCGGCTATTAAACGTGCC 59.346 55.000 0.00 2.35 41.76 5.01
278 279 0.654160 GGTCCGGCTATTAAACGTGC 59.346 55.000 0.00 0.00 0.00 5.34
279 280 0.925466 CGGTCCGGCTATTAAACGTG 59.075 55.000 2.34 0.00 0.00 4.49
280 281 0.532115 ACGGTCCGGCTATTAAACGT 59.468 50.000 17.28 0.00 0.00 3.99
281 282 0.925466 CACGGTCCGGCTATTAAACG 59.075 55.000 17.28 0.00 0.00 3.60
282 283 0.654160 GCACGGTCCGGCTATTAAAC 59.346 55.000 17.28 0.00 0.00 2.01
283 284 0.462403 GGCACGGTCCGGCTATTAAA 60.462 55.000 17.28 0.00 0.00 1.52
284 285 1.144496 GGCACGGTCCGGCTATTAA 59.856 57.895 17.28 0.00 0.00 1.40
285 286 1.404479 ATGGCACGGTCCGGCTATTA 61.404 55.000 17.28 5.39 0.00 0.98
286 287 2.742116 ATGGCACGGTCCGGCTATT 61.742 57.895 17.28 3.10 0.00 1.73
287 288 3.161450 ATGGCACGGTCCGGCTAT 61.161 61.111 17.28 15.78 0.00 2.97
288 289 4.155733 CATGGCACGGTCCGGCTA 62.156 66.667 17.28 14.16 0.00 3.93
333 334 0.892755 TACTAACCAGTCCGTGCCTG 59.107 55.000 0.00 0.00 36.14 4.85
334 335 1.636148 TTACTAACCAGTCCGTGCCT 58.364 50.000 0.00 0.00 36.14 4.75
335 336 2.460757 TTTACTAACCAGTCCGTGCC 57.539 50.000 0.00 0.00 36.14 5.01
336 337 2.676342 CCATTTACTAACCAGTCCGTGC 59.324 50.000 0.00 0.00 36.14 5.34
337 338 3.267483 CCCATTTACTAACCAGTCCGTG 58.733 50.000 0.00 0.00 36.14 4.94
338 339 2.355412 GCCCATTTACTAACCAGTCCGT 60.355 50.000 0.00 0.00 36.14 4.69
339 340 2.285977 GCCCATTTACTAACCAGTCCG 58.714 52.381 0.00 0.00 36.14 4.79
340 341 2.651455 GGCCCATTTACTAACCAGTCC 58.349 52.381 0.00 0.00 36.14 3.85
341 342 2.285977 CGGCCCATTTACTAACCAGTC 58.714 52.381 0.00 0.00 36.14 3.51
342 343 1.064979 CCGGCCCATTTACTAACCAGT 60.065 52.381 0.00 0.00 38.91 4.00
343 344 1.675552 CCGGCCCATTTACTAACCAG 58.324 55.000 0.00 0.00 0.00 4.00
344 345 0.394625 GCCGGCCCATTTACTAACCA 60.395 55.000 18.11 0.00 0.00 3.67
345 346 0.106868 AGCCGGCCCATTTACTAACC 60.107 55.000 26.15 0.00 0.00 2.85
346 347 1.306148 GAGCCGGCCCATTTACTAAC 58.694 55.000 26.15 0.00 0.00 2.34
347 348 0.179067 CGAGCCGGCCCATTTACTAA 60.179 55.000 26.15 0.00 0.00 2.24
348 349 1.044231 TCGAGCCGGCCCATTTACTA 61.044 55.000 26.15 0.00 0.00 1.82
349 350 1.696097 ATCGAGCCGGCCCATTTACT 61.696 55.000 26.15 0.00 0.00 2.24
350 351 1.227853 ATCGAGCCGGCCCATTTAC 60.228 57.895 26.15 5.17 0.00 2.01
351 352 1.227823 CATCGAGCCGGCCCATTTA 60.228 57.895 26.15 3.01 0.00 1.40
352 353 2.516930 CATCGAGCCGGCCCATTT 60.517 61.111 26.15 2.91 0.00 2.32
353 354 4.569180 CCATCGAGCCGGCCCATT 62.569 66.667 26.15 3.43 0.00 3.16
362 363 2.534903 GCTAAACGGGCCATCGAGC 61.535 63.158 4.39 2.73 0.00 5.03
363 364 1.153449 TGCTAAACGGGCCATCGAG 60.153 57.895 4.39 0.00 0.00 4.04
364 365 1.448893 GTGCTAAACGGGCCATCGA 60.449 57.895 4.39 0.00 0.00 3.59
365 366 3.098555 GTGCTAAACGGGCCATCG 58.901 61.111 4.39 1.48 0.00 3.84
374 375 2.870372 CAGCCCAGCGTGCTAAAC 59.130 61.111 0.00 0.00 36.81 2.01
375 376 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
376 377 4.328025 TGCAGCCCAGCGTGCTAA 62.328 61.111 0.00 0.00 40.54 3.09
380 381 2.424705 AAAATGTGCAGCCCAGCGTG 62.425 55.000 0.00 0.00 37.31 5.34
381 382 2.146073 GAAAATGTGCAGCCCAGCGT 62.146 55.000 0.00 0.00 37.31 5.07
382 383 1.444895 GAAAATGTGCAGCCCAGCG 60.445 57.895 0.00 0.00 37.31 5.18
383 384 0.389426 CTGAAAATGTGCAGCCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
384 385 3.806591 CTGAAAATGTGCAGCCCAG 57.193 52.632 0.00 0.00 0.00 4.45
389 390 0.601558 AGCAGGCTGAAAATGTGCAG 59.398 50.000 20.86 0.00 36.57 4.41
390 391 0.315886 CAGCAGGCTGAAAATGTGCA 59.684 50.000 20.86 0.00 46.30 4.57
391 392 0.389426 CCAGCAGGCTGAAAATGTGC 60.389 55.000 20.86 0.00 46.30 4.57
392 393 0.245539 CCCAGCAGGCTGAAAATGTG 59.754 55.000 20.86 4.69 46.30 3.21
393 394 2.662309 CCCAGCAGGCTGAAAATGT 58.338 52.632 20.86 0.00 46.30 2.71
403 404 0.890683 CTAAAAACCAGCCCAGCAGG 59.109 55.000 0.00 0.00 41.13 4.85
404 405 0.890683 CCTAAAAACCAGCCCAGCAG 59.109 55.000 0.00 0.00 0.00 4.24
405 406 1.184970 GCCTAAAAACCAGCCCAGCA 61.185 55.000 0.00 0.00 0.00 4.41
406 407 1.591703 GCCTAAAAACCAGCCCAGC 59.408 57.895 0.00 0.00 0.00 4.85
407 408 2.276869 GGCCTAAAAACCAGCCCAG 58.723 57.895 0.00 0.00 39.60 4.45
408 409 4.531351 GGCCTAAAAACCAGCCCA 57.469 55.556 0.00 0.00 39.60 5.36
410 411 3.361786 TCAATAGGCCTAAAAACCAGCC 58.638 45.455 18.42 0.00 46.13 4.85
411 412 3.181486 GCTCAATAGGCCTAAAAACCAGC 60.181 47.826 18.42 14.02 0.00 4.85
412 413 4.273318 AGCTCAATAGGCCTAAAAACCAG 58.727 43.478 18.42 8.20 0.00 4.00
413 414 4.316025 AGCTCAATAGGCCTAAAAACCA 57.684 40.909 18.42 0.00 0.00 3.67
414 415 8.637196 AATATAGCTCAATAGGCCTAAAAACC 57.363 34.615 18.42 5.80 0.00 3.27
418 419 9.959721 CCTAAAATATAGCTCAATAGGCCTAAA 57.040 33.333 18.42 4.60 0.00 1.85
419 420 9.112658 ACCTAAAATATAGCTCAATAGGCCTAA 57.887 33.333 18.42 0.00 33.35 2.69
420 421 8.680820 ACCTAAAATATAGCTCAATAGGCCTA 57.319 34.615 16.60 16.60 33.35 3.93
421 422 7.575499 ACCTAAAATATAGCTCAATAGGCCT 57.425 36.000 11.78 11.78 33.35 5.19
550 551 3.122971 GGCTAAACGGGTCGTGCC 61.123 66.667 4.91 4.91 39.99 5.01
551 552 3.122971 GGGCTAAACGGGTCGTGC 61.123 66.667 0.00 0.00 39.99 5.34
552 553 2.812178 CGGGCTAAACGGGTCGTG 60.812 66.667 0.00 0.00 39.99 4.35
553 554 3.305516 ACGGGCTAAACGGGTCGT 61.306 61.111 0.00 0.00 43.97 4.34
554 555 2.812178 CACGGGCTAAACGGGTCG 60.812 66.667 0.00 0.00 35.23 4.79
555 556 3.122971 GCACGGGCTAAACGGGTC 61.123 66.667 0.00 0.00 37.02 4.46
556 557 4.710167 GGCACGGGCTAAACGGGT 62.710 66.667 10.74 0.00 40.87 5.28
557 558 3.987954 ATGGCACGGGCTAAACGGG 62.988 63.158 10.74 0.00 40.87 5.28
558 559 2.437716 ATGGCACGGGCTAAACGG 60.438 61.111 10.74 0.00 40.87 4.44
559 560 2.791256 CATGGCACGGGCTAAACG 59.209 61.111 10.74 0.00 40.87 3.60
560 561 2.489751 GCATGGCACGGGCTAAAC 59.510 61.111 10.74 0.00 40.87 2.01
561 562 2.753849 GGCATGGCACGGGCTAAA 60.754 61.111 15.47 0.00 40.87 1.85
562 563 3.727258 AGGCATGGCACGGGCTAA 61.727 61.111 22.64 0.00 39.16 3.09
563 564 4.488136 CAGGCATGGCACGGGCTA 62.488 66.667 22.64 2.50 38.93 3.93
606 607 2.501223 TAAACAGACCAGCCCGCGAG 62.501 60.000 8.23 0.00 0.00 5.03
607 608 2.501223 CTAAACAGACCAGCCCGCGA 62.501 60.000 8.23 0.00 0.00 5.87
608 609 2.047655 TAAACAGACCAGCCCGCG 60.048 61.111 0.00 0.00 0.00 6.46
609 610 2.399356 GCTAAACAGACCAGCCCGC 61.399 63.158 0.00 0.00 0.00 6.13
610 611 3.890674 GCTAAACAGACCAGCCCG 58.109 61.111 0.00 0.00 0.00 6.13
613 614 1.745489 CCGGGCTAAACAGACCAGC 60.745 63.158 0.00 0.00 36.56 4.85
614 615 1.745489 GCCGGGCTAAACAGACCAG 60.745 63.158 12.87 0.00 36.56 4.00
615 616 2.349755 GCCGGGCTAAACAGACCA 59.650 61.111 12.87 0.00 36.56 4.02
616 617 2.437895 GGCCGGGCTAAACAGACC 60.438 66.667 22.87 0.00 0.00 3.85
617 618 2.437895 GGGCCGGGCTAAACAGAC 60.438 66.667 28.80 4.21 0.00 3.51
618 619 4.090588 CGGGCCGGGCTAAACAGA 62.091 66.667 28.80 0.00 0.00 3.41
619 620 3.912745 AACGGGCCGGGCTAAACAG 62.913 63.158 31.78 14.11 0.00 3.16
620 621 3.494736 AAACGGGCCGGGCTAAACA 62.495 57.895 31.78 0.00 0.00 2.83
621 622 2.674033 AAACGGGCCGGGCTAAAC 60.674 61.111 31.78 10.12 0.00 2.01
622 623 2.673687 CAAACGGGCCGGGCTAAA 60.674 61.111 31.78 0.00 0.00 1.85
631 632 1.153046 TATAGCTGGGCAAACGGGC 60.153 57.895 0.00 0.00 42.44 6.13
632 633 0.180406 AGTATAGCTGGGCAAACGGG 59.820 55.000 0.00 0.00 0.00 5.28
633 634 2.038387 AAGTATAGCTGGGCAAACGG 57.962 50.000 0.00 0.00 0.00 4.44
634 635 2.747446 ACAAAGTATAGCTGGGCAAACG 59.253 45.455 0.00 0.00 0.00 3.60
635 636 3.506067 ACACAAAGTATAGCTGGGCAAAC 59.494 43.478 0.00 0.00 0.00 2.93
636 637 3.761897 ACACAAAGTATAGCTGGGCAAA 58.238 40.909 0.00 0.00 0.00 3.68
637 638 3.433306 ACACAAAGTATAGCTGGGCAA 57.567 42.857 0.00 0.00 0.00 4.52
638 639 3.118408 CCTACACAAAGTATAGCTGGGCA 60.118 47.826 0.00 0.00 30.93 5.36
639 640 3.134081 TCCTACACAAAGTATAGCTGGGC 59.866 47.826 0.00 0.00 30.93 5.36
640 641 5.116882 GTTCCTACACAAAGTATAGCTGGG 58.883 45.833 0.00 0.00 30.93 4.45
641 642 4.804139 CGTTCCTACACAAAGTATAGCTGG 59.196 45.833 0.00 0.00 30.93 4.85
642 643 5.647589 TCGTTCCTACACAAAGTATAGCTG 58.352 41.667 0.00 0.00 30.93 4.24
643 644 5.909621 TCGTTCCTACACAAAGTATAGCT 57.090 39.130 0.00 0.00 30.93 3.32
644 645 6.366877 TGTTTCGTTCCTACACAAAGTATAGC 59.633 38.462 0.00 0.00 30.93 2.97
645 646 7.878477 TGTTTCGTTCCTACACAAAGTATAG 57.122 36.000 0.00 0.00 30.93 1.31
646 647 8.836268 AATGTTTCGTTCCTACACAAAGTATA 57.164 30.769 0.00 0.00 30.93 1.47
647 648 7.739498 AATGTTTCGTTCCTACACAAAGTAT 57.261 32.000 0.00 0.00 30.93 2.12
648 649 7.556733 AAATGTTTCGTTCCTACACAAAGTA 57.443 32.000 0.00 0.00 0.00 2.24
649 650 6.445357 AAATGTTTCGTTCCTACACAAAGT 57.555 33.333 0.00 0.00 0.00 2.66
659 660 7.910683 GGATAATCTGAGAAAATGTTTCGTTCC 59.089 37.037 0.00 0.00 0.00 3.62
699 700 4.901197 TTCTCAGTAATACAGCCCACAA 57.099 40.909 0.00 0.00 0.00 3.33
706 707 6.102663 CCCTCTGTGTTTCTCAGTAATACAG 58.897 44.000 12.90 12.90 42.55 2.74
714 715 3.760580 AAGACCCTCTGTGTTTCTCAG 57.239 47.619 0.00 0.00 0.00 3.35
727 728 3.244112 CGTGACACTTTTCCTAAGACCCT 60.244 47.826 3.68 0.00 0.00 4.34
731 732 3.551454 CCGTCGTGACACTTTTCCTAAGA 60.551 47.826 3.68 0.00 0.00 2.10
732 733 2.729882 CCGTCGTGACACTTTTCCTAAG 59.270 50.000 3.68 0.00 0.00 2.18
737 739 1.563111 TCACCGTCGTGACACTTTTC 58.437 50.000 3.68 0.00 44.20 2.29
759 761 3.750373 TTATCGCTTCTGCCCGCCC 62.750 63.158 0.00 0.00 35.36 6.13
881 905 3.916359 TGACCCGCCTAAATGATTGTA 57.084 42.857 0.00 0.00 0.00 2.41
957 989 1.605712 GCTAGGTGTCGTTGCTGTCTT 60.606 52.381 0.00 0.00 0.00 3.01
961 993 1.469940 CCTAGCTAGGTGTCGTTGCTG 60.470 57.143 28.90 1.45 38.69 4.41
977 1009 3.066621 TGCAACTTTCAGTTTGCACCTAG 59.933 43.478 4.93 0.00 36.03 3.02
990 1022 1.418373 GGTTCGCCATTGCAACTTTC 58.582 50.000 0.00 0.00 37.32 2.62
1110 1142 2.100605 ACGAGGCATTCTTGGTCTTC 57.899 50.000 0.00 0.00 0.00 2.87
1127 1159 0.657077 CAACACGGACATGCACAACG 60.657 55.000 0.00 0.00 0.00 4.10
1144 1176 5.189736 AGGTACTCTTTGGATCTATGTGCAA 59.810 40.000 0.00 0.00 0.00 4.08
1204 1236 1.078759 GTGTCACCGGCGATCTTCAG 61.079 60.000 9.30 0.00 0.00 3.02
1312 1344 1.444119 TTGCCCGCGAATTGATAGGC 61.444 55.000 8.23 10.10 40.87 3.93
1335 1367 2.178521 CGGACGTTGACCTCGAGG 59.821 66.667 30.11 30.11 42.17 4.63
1345 1377 1.289380 GAAGGAGAGTGCGGACGTT 59.711 57.895 0.00 0.00 0.00 3.99
1365 1397 0.103572 CGGTAATGTAGTCCCCACCG 59.896 60.000 0.00 0.00 42.41 4.94
1367 1399 0.529119 CGCGGTAATGTAGTCCCCAC 60.529 60.000 0.00 0.00 0.00 4.61
1391 1423 2.290071 CCCTTGGTATCCAACACGAGTT 60.290 50.000 0.00 0.00 38.75 3.01
1392 1424 1.278127 CCCTTGGTATCCAACACGAGT 59.722 52.381 0.00 0.00 38.75 4.18
1396 1428 0.322187 ACGCCCTTGGTATCCAACAC 60.322 55.000 0.00 0.00 38.75 3.32
1406 1438 2.511600 GATCACCGACGCCCTTGG 60.512 66.667 0.00 0.00 0.00 3.61
1416 1448 1.333524 GCATTCTCGCAATGATCACCG 60.334 52.381 0.00 1.37 0.00 4.94
1511 1543 0.962356 AAGCAGGGCAATGAGTTCGG 60.962 55.000 0.00 0.00 0.00 4.30
1525 1557 5.821470 AGATTGATCACTTGTGGATAAGCAG 59.179 40.000 0.00 0.00 0.00 4.24
1586 1618 3.262420 ACATGTTGCTAGATGACGAACC 58.738 45.455 12.04 0.00 0.00 3.62
1647 1679 6.823182 TGGTAAGATTGACATTCTATGTGGTG 59.177 38.462 0.42 0.00 45.03 4.17
1676 1708 7.363355 GGAACCAAACTAGTACTAGAGTTACCC 60.363 44.444 31.93 20.90 34.81 3.69
1685 1717 5.697633 CGCTTTTGGAACCAAACTAGTACTA 59.302 40.000 17.09 1.89 44.39 1.82
1693 1725 1.135333 TGGTCGCTTTTGGAACCAAAC 59.865 47.619 17.09 7.49 44.39 2.93
1723 1755 0.868406 CCAGAGCTCGGAACACAAAC 59.132 55.000 16.02 0.00 0.00 2.93
1724 1756 0.250295 CCCAGAGCTCGGAACACAAA 60.250 55.000 21.43 0.00 0.00 2.83
1737 1769 2.484651 CCGATACGTCATCTACCCAGAG 59.515 54.545 0.00 0.00 33.22 3.35
1738 1770 2.501261 CCGATACGTCATCTACCCAGA 58.499 52.381 0.00 0.00 34.56 3.86
1739 1771 1.068472 GCCGATACGTCATCTACCCAG 60.068 57.143 0.00 0.00 0.00 4.45
1743 1775 2.793232 GGTTTGCCGATACGTCATCTAC 59.207 50.000 0.00 0.00 0.00 2.59
1769 1801 1.267121 CCTGGACCCTGGATATACGG 58.733 60.000 6.13 0.00 37.23 4.02
1793 1825 0.464554 CGGGAAATTGAGGAGAGCCC 60.465 60.000 0.00 0.00 33.31 5.19
1794 1826 0.541863 TCGGGAAATTGAGGAGAGCC 59.458 55.000 0.00 0.00 0.00 4.70
1796 1828 3.873952 GTCATTCGGGAAATTGAGGAGAG 59.126 47.826 0.00 0.00 0.00 3.20
1797 1829 3.370527 GGTCATTCGGGAAATTGAGGAGA 60.371 47.826 0.00 0.00 0.00 3.71
1798 1830 2.945668 GGTCATTCGGGAAATTGAGGAG 59.054 50.000 0.00 0.00 0.00 3.69
1803 1835 2.143876 AGGGGTCATTCGGGAAATTG 57.856 50.000 0.00 0.00 0.00 2.32
1804 1836 2.735151 GAAGGGGTCATTCGGGAAATT 58.265 47.619 0.00 0.00 0.00 1.82
1805 1837 1.408266 CGAAGGGGTCATTCGGGAAAT 60.408 52.381 6.79 0.00 44.40 2.17
1820 1852 2.951930 GTCGATCCAGACTCCCGAAGG 61.952 61.905 0.00 0.00 42.32 3.46
1821 1853 0.382515 GTCGATCCAGACTCCCGAAG 59.617 60.000 0.00 0.00 38.09 3.79
1822 1854 0.323087 TGTCGATCCAGACTCCCGAA 60.323 55.000 0.00 0.00 41.47 4.30
1823 1855 1.030488 GTGTCGATCCAGACTCCCGA 61.030 60.000 0.00 0.00 41.47 5.14
1825 1857 0.457851 CTGTGTCGATCCAGACTCCC 59.542 60.000 8.21 0.00 41.47 4.30
1826 1858 0.179124 GCTGTGTCGATCCAGACTCC 60.179 60.000 15.94 0.00 41.47 3.85
1827 1859 0.179124 GGCTGTGTCGATCCAGACTC 60.179 60.000 15.94 0.00 41.47 3.36
1828 1860 0.613292 AGGCTGTGTCGATCCAGACT 60.613 55.000 14.91 14.91 42.28 3.24
1829 1861 0.459237 CAGGCTGTGTCGATCCAGAC 60.459 60.000 15.94 13.63 41.30 3.51
1830 1862 1.893062 CAGGCTGTGTCGATCCAGA 59.107 57.895 15.94 0.00 0.00 3.86
1831 1863 1.812922 GCAGGCTGTGTCGATCCAG 60.813 63.158 17.16 9.29 0.00 3.86
1832 1864 2.265739 GCAGGCTGTGTCGATCCA 59.734 61.111 17.16 0.00 0.00 3.41
1833 1865 2.512515 GGCAGGCTGTGTCGATCC 60.513 66.667 17.16 2.65 0.00 3.36
1857 1889 3.067461 CGGGAAGATGGATAGATCGATCC 59.933 52.174 23.85 23.85 45.06 3.36
1858 1890 3.948473 TCGGGAAGATGGATAGATCGATC 59.052 47.826 17.91 17.91 40.85 3.69
1860 1892 3.009143 TCTCGGGAAGATGGATAGATCGA 59.991 47.826 0.00 0.00 0.00 3.59
1862 1894 3.127895 CGTCTCGGGAAGATGGATAGATC 59.872 52.174 0.00 0.00 37.37 2.75
1863 1895 3.085533 CGTCTCGGGAAGATGGATAGAT 58.914 50.000 0.00 0.00 37.37 1.98
1864 1896 2.105993 TCGTCTCGGGAAGATGGATAGA 59.894 50.000 0.00 0.00 40.82 1.98
1865 1897 2.505405 TCGTCTCGGGAAGATGGATAG 58.495 52.381 0.00 0.00 40.82 2.08
1866 1898 2.621998 GTTCGTCTCGGGAAGATGGATA 59.378 50.000 0.56 0.00 40.82 2.59
1867 1899 1.409427 GTTCGTCTCGGGAAGATGGAT 59.591 52.381 0.56 0.00 40.82 3.41
1869 1901 0.818296 AGTTCGTCTCGGGAAGATGG 59.182 55.000 0.56 0.00 40.82 3.51
1870 1902 1.472878 TCAGTTCGTCTCGGGAAGATG 59.527 52.381 0.56 0.00 41.66 2.90
1872 1904 1.268899 GTTCAGTTCGTCTCGGGAAGA 59.731 52.381 0.00 0.00 0.00 2.87
1873 1905 1.269998 AGTTCAGTTCGTCTCGGGAAG 59.730 52.381 0.00 0.00 0.00 3.46
1875 1907 0.596577 CAGTTCAGTTCGTCTCGGGA 59.403 55.000 0.00 0.00 0.00 5.14
1876 1908 0.596577 TCAGTTCAGTTCGTCTCGGG 59.403 55.000 0.00 0.00 0.00 5.14
1877 1909 1.687628 GTCAGTTCAGTTCGTCTCGG 58.312 55.000 0.00 0.00 0.00 4.63
1879 1911 1.266175 TCCGTCAGTTCAGTTCGTCTC 59.734 52.381 0.00 0.00 0.00 3.36
1881 1913 2.052157 CTTCCGTCAGTTCAGTTCGTC 58.948 52.381 0.00 0.00 0.00 4.20
1882 1914 1.407979 ACTTCCGTCAGTTCAGTTCGT 59.592 47.619 0.00 0.00 0.00 3.85
1883 1915 2.135664 ACTTCCGTCAGTTCAGTTCG 57.864 50.000 0.00 0.00 0.00 3.95
1889 1921 1.615107 CGCCGAACTTCCGTCAGTTC 61.615 60.000 12.04 12.04 46.40 3.01
1890 1922 1.663702 CGCCGAACTTCCGTCAGTT 60.664 57.895 0.00 0.00 39.84 3.16
1891 1923 2.049433 CGCCGAACTTCCGTCAGT 60.049 61.111 0.00 0.00 0.00 3.41
1892 1924 3.479269 GCGCCGAACTTCCGTCAG 61.479 66.667 0.00 0.00 0.00 3.51
1909 1941 3.978723 CTCCGTCTCTGTGCAGCGG 62.979 68.421 9.44 9.44 43.32 5.52
1910 1942 2.505777 CTCCGTCTCTGTGCAGCG 60.506 66.667 0.00 0.00 0.00 5.18
1911 1943 2.125753 CCTCCGTCTCTGTGCAGC 60.126 66.667 0.00 0.00 0.00 5.25
1912 1944 1.315981 TAGCCTCCGTCTCTGTGCAG 61.316 60.000 0.00 0.00 0.00 4.41
1913 1945 1.304134 TAGCCTCCGTCTCTGTGCA 60.304 57.895 0.00 0.00 0.00 4.57
1914 1946 1.435515 CTAGCCTCCGTCTCTGTGC 59.564 63.158 0.00 0.00 0.00 4.57
1915 1947 1.435515 GCTAGCCTCCGTCTCTGTG 59.564 63.158 2.29 0.00 0.00 3.66
1916 1948 2.115911 CGCTAGCCTCCGTCTCTGT 61.116 63.158 9.66 0.00 0.00 3.41
1917 1949 2.718731 CGCTAGCCTCCGTCTCTG 59.281 66.667 9.66 0.00 0.00 3.35
1918 1950 2.517402 CCGCTAGCCTCCGTCTCT 60.517 66.667 9.66 0.00 0.00 3.10
1919 1951 2.829458 ACCGCTAGCCTCCGTCTC 60.829 66.667 9.66 0.00 0.00 3.36
1936 1968 4.814234 AGCGATCAAACAAACTAGACAACA 59.186 37.500 0.00 0.00 0.00 3.33
1938 1970 5.525745 TGAAGCGATCAAACAAACTAGACAA 59.474 36.000 0.00 0.00 34.30 3.18
2030 2065 1.740332 AAAACCAAAACGCCTCCGGG 61.740 55.000 0.00 0.00 39.22 5.73
2032 2067 0.596341 CCAAAACCAAAACGCCTCCG 60.596 55.000 0.00 0.00 41.14 4.63
2033 2068 0.462375 ACCAAAACCAAAACGCCTCC 59.538 50.000 0.00 0.00 0.00 4.30
2034 2069 1.135333 TCACCAAAACCAAAACGCCTC 59.865 47.619 0.00 0.00 0.00 4.70
2035 2070 1.187087 TCACCAAAACCAAAACGCCT 58.813 45.000 0.00 0.00 0.00 5.52
2036 2071 2.011540 TTCACCAAAACCAAAACGCC 57.988 45.000 0.00 0.00 0.00 5.68
2037 2072 2.286563 CCATTCACCAAAACCAAAACGC 59.713 45.455 0.00 0.00 0.00 4.84
2038 2073 3.553917 GTCCATTCACCAAAACCAAAACG 59.446 43.478 0.00 0.00 0.00 3.60
2045 2155 3.120041 CCAAACGTCCATTCACCAAAAC 58.880 45.455 0.00 0.00 0.00 2.43
2048 2158 2.060050 ACCAAACGTCCATTCACCAA 57.940 45.000 0.00 0.00 0.00 3.67
2051 2161 3.120041 CCAAAACCAAACGTCCATTCAC 58.880 45.455 0.00 0.00 0.00 3.18
2059 2169 3.897141 ATTGTTCCCAAAACCAAACGT 57.103 38.095 0.00 0.00 33.44 3.99
2095 2229 1.454479 CAGGGTGGTGATCCATGGC 60.454 63.158 6.96 0.00 46.20 4.40
2097 2231 1.228228 CCCAGGGTGGTGATCCATG 59.772 63.158 0.00 0.00 46.20 3.66
2098 2232 2.693871 GCCCAGGGTGGTGATCCAT 61.694 63.158 7.55 0.00 46.20 3.41
2138 2891 1.948611 GCTGAACAAGTATGCCGGGAA 60.949 52.381 0.00 0.00 0.00 3.97
2196 2949 3.043999 GCTTGCCGGTCCCCATAGT 62.044 63.158 1.90 0.00 0.00 2.12
2259 3012 1.671054 ATCAAACACCAGGTCGGCG 60.671 57.895 0.00 0.00 39.03 6.46
2284 3037 0.410663 TCCTTCCTTCCCGTACTGGA 59.589 55.000 1.23 1.23 42.00 3.86
2325 4040 1.212751 GCGGTCCAAGTTGGCATTC 59.787 57.895 17.68 7.26 37.47 2.67
2326 4041 2.275380 GGCGGTCCAAGTTGGCATT 61.275 57.895 17.68 0.00 37.47 3.56
2371 4086 2.750948 GGTTTTCTAGCTGACGTGTCA 58.249 47.619 0.00 2.28 38.06 3.58
2392 4107 2.168728 GGTCCCAGATGACACTAGGAAC 59.831 54.545 0.00 0.00 36.97 3.62
2413 4128 1.871039 CCCGAACACACTTGGTAGTTG 59.129 52.381 0.00 0.00 30.26 3.16
2414 4129 1.487558 ACCCGAACACACTTGGTAGTT 59.512 47.619 0.00 0.00 30.26 2.24
2415 4130 1.125633 ACCCGAACACACTTGGTAGT 58.874 50.000 0.00 0.00 34.00 2.73
2416 4131 2.249844 AACCCGAACACACTTGGTAG 57.750 50.000 0.00 0.00 0.00 3.18
2417 4132 3.494749 CCTTAACCCGAACACACTTGGTA 60.495 47.826 0.00 0.00 0.00 3.25
2418 4133 2.567985 CTTAACCCGAACACACTTGGT 58.432 47.619 0.00 0.00 0.00 3.67
2432 4147 7.845066 AAGATTTCGTAGACATTCCTTAACC 57.155 36.000 0.00 0.00 34.32 2.85
2470 4239 2.511600 CGACCCATGGCGGAGTTC 60.512 66.667 6.09 0.00 36.56 3.01
2483 4252 3.053831 TGAATTTCCAGTCCTTCGACC 57.946 47.619 0.00 0.00 40.12 4.79
2484 4253 4.093556 GTCATGAATTTCCAGTCCTTCGAC 59.906 45.833 0.00 0.00 39.50 4.20
2486 4255 3.375299 GGTCATGAATTTCCAGTCCTTCG 59.625 47.826 0.00 0.00 0.00 3.79
2487 4256 4.593956 AGGTCATGAATTTCCAGTCCTTC 58.406 43.478 0.00 0.00 0.00 3.46
2490 4259 3.282885 GGAGGTCATGAATTTCCAGTCC 58.717 50.000 13.69 5.08 0.00 3.85
2491 4260 2.939103 CGGAGGTCATGAATTTCCAGTC 59.061 50.000 17.00 2.80 0.00 3.51
2492 4261 2.305927 ACGGAGGTCATGAATTTCCAGT 59.694 45.455 17.00 13.41 0.00 4.00
2493 4262 2.991250 ACGGAGGTCATGAATTTCCAG 58.009 47.619 17.00 12.97 0.00 3.86
2494 4263 3.433306 AACGGAGGTCATGAATTTCCA 57.567 42.857 17.00 0.00 0.00 3.53
2495 4264 3.181510 CGAAACGGAGGTCATGAATTTCC 60.182 47.826 0.00 4.15 0.00 3.13
2496 4265 3.682858 TCGAAACGGAGGTCATGAATTTC 59.317 43.478 0.00 0.98 0.00 2.17
2497 4266 3.670625 TCGAAACGGAGGTCATGAATTT 58.329 40.909 0.00 0.00 0.00 1.82
2498 4267 3.328382 TCGAAACGGAGGTCATGAATT 57.672 42.857 0.00 0.00 0.00 2.17
2499 4268 3.328382 TTCGAAACGGAGGTCATGAAT 57.672 42.857 0.00 0.00 0.00 2.57
2500 4269 2.823924 TTCGAAACGGAGGTCATGAA 57.176 45.000 0.00 0.00 0.00 2.57
2501 4270 3.328382 AATTCGAAACGGAGGTCATGA 57.672 42.857 0.00 0.00 0.00 3.07
2502 4271 6.838198 TTATAATTCGAAACGGAGGTCATG 57.162 37.500 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.