>input_sequence_76763
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-----------------------------------------------------------------------ATGGCGAAC
CGAGCAACATCTGTAGCCATGGTTTTCATTATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAG
CTTTGTTGCCCGGACTTGCAAGAAGACCAAGAATGCCTCGTTGTGCATGTCCGTGTTGCACATAGATCCAAAGAGTACCT
ATGCCTCCACTGAGTTGGAACTCGCCAACATCGCGCTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATC
GATGACCTAGCCAAGAAAAAGAAGGGCACGCCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGGCCTATCAATTCGCGGG
CAACGACCTCGAGGTCAACGTCCGCACTCTCCTTCACGGTGGGGACTACATTACCGCGTCGAAACTCGTGTTGGATACCA
AGGGCGTCGGTGATCATTGCGAGAATGCGTTTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATG
ACAGAGCGATGTGGCGTCGCAGCCGAACTCATTGCCCTGCTTATCCACAAGTGA--------------------------
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>chr3B_1_TraesCS3B01G008200
AAGTGCACCGGCGCACCCGCAGCCGAGCTCACACATCCCGCATCGCCACCTCGGCCGCTTGTTCCCCTCGCTTTCTGGCG
GCGCTCTCATGCAAGGACGCGGGCGCCATGGCCGGACAGATCGAGGAGAGCACGCATCCAAGGGAAGGAGCCAATGCGTT
TAAAAGGACTACGGGTTGAATACAGGGTCCTTTGTGTCAGACCTGGCCAAACGGGCCGGGCCGGCACGGCCCGGCCCGGC
CTGTGCTAATCGTGCATGGCCCGGCACGGCTCGCCATGGCACGTTTAATAGCCGGACCGTGCCATGCCGGCCCACGGGCG
CTGCTCCTTGGCCCAGGCACGGACTGGTTAGTAAATGGGCCGGCTCGATGGCCCGTTTAGCACGCTGGGCTGCACATTTT
CAGCCTGCTGGGCTGGTTTTTAGGCCTATTGAGCTATATTTTAGGTATATATATATATATAAAAATTCTGAAAAATATAT
AAAAAAATTAAACAGGTCGTGCCGTGCCGGCCCGCGTGCCCAGGCACGGCCCAAGGCGTGCCGCGTGCCGGGCACGACCC
GTTTAGCCCGTGCCATGCCTGGCCCATGGCGGGCCGTGCCGGCGTGCTCGCGGGCTGGTCTGTTTAGCCCGGCCCGTTTG
CCCAGCTATACTTTGTGTAGGAACGAAACATTTTCTCAGATTATCCACTTAAAAAAGGATTGTGGGCTGTATTACTGAGA
AACACAGAGGGTC-TTAGGAAAAGTGTCACGACGGTGAACGGGCGGGCAGAAGCGATAATTGCTTTATTATTA-------
----GGAAAAGATTTGATTTGATTTGATTTGATTTGATTTGATTGAT----------TTGATTTGATTTGATATGACATT
TGATATAGCGA-AAACAATAAATATACAATC--------ATTTAGGCGGGTCATATCATAAGGATTTTCTCGTGTGTGTG
TACCTTATATATAGAAGAAAGAATCACCAAGACAGCAACGACACCTAGCTAGGTGCAAACTGAAAGTTGCAATGGCGAAC
CGAGCAACATCTGTAGCCATGGTTTTCATTATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAG
CTTTGTTGCCCGGACTTGCAAGAAGACCAAGAATGCCTCGTTGTGCATGTCCGTGTTGCACATAGATCCAAAGAGTACCT
ATGCCTCCACTGAGTTGGAACTCGCCAACATCGCGCTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATC
GATGACCTAGCCAAGAAAAAGAAGGGCACGCCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGGCCTATCAATTCGCGGG
CAACGACCTCGAGGTCAACGTCCGCACTCTCCTTCACGGTGGGGACTACATTACCGCGTCGAAACTCGTGTTGGATACCA
AGGGCGTCGGTGATCATTGCGAGAATGCGTTTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATG
ACAGAGCGATGTGGCGTCGCAGCCGAACTCATTGCCCTGCTTATCCACAAGTGATCAATCTTTGATCATATGTACAAGCT
CCCGTCAATAATTAATCGGTTCGTCATCTAGCAACATGTTCGGTCATTGATGTTATTGTGAATTATTATTGAGCTTAGCA
CCACATAGAATGTCAATCTTACCAACTGGGTAACTCTAGTACTAGTTTGGTTCCAAAAGCGACCAAGCATGATAGTTTGT
GTTCCGAGCTCTGGGTAGATGACGTATCGGCAAACCTCCCCCGTATATCCAGGGTCCAGGCCCAGGGCTCTCCTCAATTT
CCCGAATGACCCCTTCGGGAGTCTGGATCGACACAGCCTGCCGCCGATGGATCGATCTATCCATCTTCCCGAGACGAACT
GAACTGACGGAAGTTCGGCGCCGCTGCACAGAGACGGAGGCTAGCGGTGTTGTCT---AGTTTGTTTGATCGCTTCATTT
CCTGCCCGGAGGCGCAGCCCATAGGCCATAGCCCTGCTCGCATGAGGAATTTCCATACCTTATGCCCGGAGGCG------
---------------------------------------------------------------------TTTTGGTTTTG
GTGAATGGACG------------------------TTTGGTTTTGGGAACAATTGGATTCGATGCACGGCCATGGATCAC
CACC----------------------------------------------------------------------------
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---------------------------------------------------------------CTGGGCGCGAGCACCCT
CGACGGCGACTTCCCGGCATACTTGTTCAGCCGTCCTCGGAAACGGCAAGAACACATCACAACGGCGTACTATGGGGACC
GGCAAGCGAGTGGCAGCCGACGGCGACCTGCCGGAGACGAGCTACCTCTTGCGCCGACCTGGTGTTTGATGAAATGTCCA
GTACGGGAAGGAAG------------------------------------------------------------------
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----------------GAAGAAGAAGAAGGCAGAGGTGTGAATGCCAACTTGGACCGCCACGTGCACGTCTGGGTTCAAA
AACCATGACACGTCAGCTAGAAAACCGTTCCTAGTGTCATCTGGGACCAACTACCAAGTGTGTTCGGGTTAAGGAATGTC
TACGAAATCTTTTCAAGG------------------------------------------------------GAACATGA
ACTCCGCCATGGGTCGAAGGACTGGAAATTCATGACCTCCGTTTCGAATTATAAAATGTTTTGGATATGTC
>chr3A_651
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----------CTTTGTGTAAGAACGAAATATTTTCTCAGATTATCCACTTTAAAAAGGACTGTGGGTTGTATTATTGAGA
AACACAGGGGGATTTTAGCAAAAGTGTCACTACGGTGAGCAGGCGGGTAGAGGCGATAATTGCTTTATTATTATATATAT
TATAGGGAAAGATCTGATTTGATTTGATTTGATTTGATTTGATTCGGTTTGATTTGATTGATTTGATTTGATATGACATT
TGATCTAGCGAGAACCAATAAATACACAATCATACAATCATTTAGGCGGGTCATATCATAAGGATTTTCTCGTGTGTGTA
CCT-TTACATATAGAAGAAAGAATCACCGAGATAGCAACGACACCTAGGTAGGTGCAAACTAAAAGTTGCAATGGCGAAC
CGAGCAACATCTGTAGCCATGGTTTTCATTATTCTCGGCATCATGTCCTTCGGAATCTCTGTCGCCGATGCCGACGCCAG
CTTTGTTGCCCGGACTTGCAACAAGACCAAGAATGCCTTGTTGTGCATGTCCGTGCTGCACATAGATCCAAAGAGTACCT
ATGCCTCCACTGAGTTGGAACTTGCCAACATCGCGGTGAAGATCGCCGGTGACACCGCCAACCACAACGCCAAGGTCATC
GATGACCTAGCCAAGAAAAAGAAGGGCACGCCAGAGGGGGGCGTGTTAAACGTCTGCCTCTGGTCCTATCAATTCGCGGG
CAACGAACTCGAGGTCGACGTCCGCACTCTCCTTCATGATGGGGACTACATTACCGCGTCGAGTCTCATGTTGGATATCA
AGGGCGTTGGTGATCATTGCGAGAATGCGTTTAAGGGGATGGAGAAGAAATCCCCAGTGACAAACATAGATCGCGAGATG
ACAGAGCGATGTGGCGTCGCAGGCGAACTCATTGCCATGCTTATCCACAAGTGATCAATCTTTGATCATATGTACAAGCT
CCCGTCAATAATTAATCAGTTCGTCATCTAGCAACATGTTCGGTCATTGATGTTATTGTGAATTATTATTGAGCTTAGTA
CCACATAGAATGTCAATCTTACCAACTCGGTAACTCCAGTACTACTTTGGTTCCAAAAGCGACCAAGCATGATATCTTGT
GTTCCGAGT--TGGCTAGATGACGTATCGGCAAACCTCCCACGTATATCCTAGTACACGAGGACATGGGTTCCTTCCTTT
TTGATCCTGTGATCCCACACAGACACACAGTAAGACAGTTACCTCGTAACAACCGATACTAAAATTGTTCTA--------
-------------------------------AGACGGAGGCTAGCGGCGATGTCTGCTAGTTTGTTTGATCGCTTGGTTT
CCTGCCCGGAGGCGCAGCCCATAGGCCATAGCCCTGCTCGCATGAGGAATTTCCATACCTTATGGCACAGCAAGCCATCC
GCGCACAGGCGCACTGCATCACAAGAAGGTGCCTTCTCAGATGATCTAGCTTATTAATATAGCTTATGCTTTTGATTCTG
TTGAATGGCCGTTCCTCGTTGAAATTATGCAGCCTTTTGGTTTTGGGAACAATTGGATTCGATGCACGACTCTGTTCCTC
GTTGAAATTATGCAGCGTTTTGGTTTTGCTGAATGGACGTTTGGGTGACCCAATCTGGCAGGTTTCTTCGAGAGGTTGCT
TAATGCCAAGTTTCTGCGCGTAGGTCATCCAGTTTTTCTTCGCTATAACACCATCCTGTAAATACTCTTTTCTATTCTCA
ATATAATGACACAAAAATCTAAAAAAGCGCACAAGTAGAAAAACAGTCGGTGGCCGATACCAAGGTCAGGACATCACCTA
TCTGTCCACCAGGTGCGCTCAAACTGAAACCATATTTAAATTAGACTACTTTGTTGTGTTGAATATATAGATGAGTATAT
TGTGTGCAAATGCATCAGTTCATCAATCAAATTATCTTGAGAAGATACATAGTAGGTTTAGTCTTTTTGTTTTAGTATCT
TGACAAGCCTATAATTTGTCTAGTGTTTGAATTTATTCATTTTTCTTTCATAAAAATGTGTATTCTAGAAATTTCAGGGC
CCCAATTCGCATTTCGCATCGGGGCCCTGAATTTCTGGAGACGGCCTCTTCCATCTATGTTACCCGTCCTGGAGCACGCC
GTTGGTACCCCCCGTGCGGACGCCATGGAGGCTGATGATGGAGGTGCCCGTCCCGGAGGATGGCCGGGCGCGAGGACACT
GGAGGCCGCGGAGGCGTTGGTGATGCTGAGTGAGAGTTGAGCAGATTTATCGATCCATCATCGGTTCCCAAGCTACGAAC
TTGCTCTGTTTCAC------------------------------------------------------------------
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-----------TGCTAGAGTAGAGTAGAGTAGAGTAGTCAGTAGGCATGATTGA--------------------------
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--------------------------------------------------------------------------TCCTTT
CCTTGGTGGCACGAAATGGTGCGACACAAGGTCT----------------------------------------------
---------------------------------------TTTCTTTGTTTCTGGGATGGCTGTCCATCCCTTGTTCATTT
AGGAGTTTTTAGTATTGCAATCTCCATGCTGCC-----------------------------------------------
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-----------------------------------------------------------------------AAATGCACA
TTTCGATCCCGAAGACGATCGGAATGCTATGATCAAACATGATCTACCAACACTGCATTTCATCCTTGTGTTGGAGCTTA
GAATTAATTAACATCACATTCTTCTTCCTCCTCCTCCCACGCATTTCACCGAGCACTTGGTGAGCGCCCGAGGTAGCTCG
TCTCGGCAGCTCGCCGCTGCCGGCGTGACGATAGCCGCCGGAACCGTCGCCGCGTTCTGCCACGATGCAGAAGAACATCA
ACTCCGCCATGACTAAAAATGT---------ATGACCTCCGTTTCGAATTATAAAATGT------------
>chr3D_2084
ATTCCGACGCTCGCGCCG--------------------------------------------------------------
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------------------------------------------------------------------------TGGATCAC
CACC----------------------------------------------------------------------------
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---------------------------------------------------------------GTGGGCGCGAGCACCCT
CGACGGCGACATCCCGGCATACGTGTTCAGCCGTCCTCGGAATCGGCAAGAACACATCACAACGGCGTGCTGTGCGGAGC
GACAAGCGAGTGGCAGCCGACGGCGACCTGCCGGAGACGAGCTACCTCTTGTGCCGACCTGGTGTTTGATGAAATGCCCA
GTACGGGAAGGAAGAAGAAGAAGGCAGATGTGTATGCCAACTTGGACCGCCACATGCACGTCTGGGTTCAAAAACCACGA
CACGTAAGACATCTCATAAAAATGAACAGAGGGAGTACTTTTCTCTTATCAGCTTTCCTACCCCGAGACGTACCTTTATT
TGTGGAGAGCAAGCGGACGACCAAAACCCTAGCCGCCGCCTCATCTACTTCCCTTCTCGCTGCCGCCGGGCAGAGCCCAT
GCCGCGCCGACGATGACAGGGAGATCCTGATCGGGGGCGGCTTGTTTGTGCAGGAGTTGAAGGGATGTTGCAGGACGTTG
AATGAAATGTGTGCTAGAGTGGTAGTCTTCTTAAGGCGGTGCTAGACGACGGACTTGGTGGTCCAGCACAACAATCTTCA
ATGGCGGCCCAACCTGTCTAGGTCACCGGAGAAGATGGAGTAGGTGCATGGTCGGGGTTAAACTTTTTTCACGTTTTCTT
TAGGATTCTTCAAGTTTGATCTAGGACGGCAAGGCAGAGGTACTGTACCAGTGGAAGAATAATGTGCACCCCACTCTTTT
CCTTTCTGGCGGTGTGCTTATCACAGGCGAGGGTTGTGTGGACTGTGGAGCAATGTCTCTGATGGGTCTTCTCGGATCCG
TTCGGTTTTGGTATTCGTTGGATTCTATATTTAGCCGGCTTTCGTTGTTTTTGGAGTTTCTACAGGCCCTTACCAGTGTT
TTCGTCTCCCAGACGGCGATTTATTTCGCAGATCACGATTGTCGGCTTCTGCTAGTTTGCGTCGATGACTTCTCGGACAC
TGCTTCTATAATCTCCTGGGTTTTAAAAGGTTTGCTCCGCCGTGGTCGAGGCTAAGAGGCGGCATCGAGCTATTCTCATG
GCACATCGAGCTAATCACGACGGCGACCTGGCGGAGACGAGCTACCTCTCGTGCCAACCTGGTGTTTGATGAAATGCCCA
GTACGGGAAGGAAGAAGAAGAAGAAGAAGGCAGAGGTGT--ATGCCAACTTGGACCGCCACGTGTACGTCTGGGTTCAAA
AACCACGACACGTCAGCTAGAAAACCATTCCTAGTGTCATCTGGGA-------CCAAGTGTTTTTGTGTTAAGGAATGTC
TACGAAATCTTTTCAAGG------------------------------------------------------GAACATCA
ACTCCGCCATG------------------------------------------------------------
>SNPs
-SSSSS--SSS---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------S--------S---------------------S--------S------S-------S-----
-------S---SS-----S-----------S-------S-S------S---S----------------------------
------S------S------------------------------SSS---------------------------------
----S---------S---------S------------------------------------------------------S
SSSS---S--------------------S---S---------------S------------S------------------
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---------------------S----------------S----------------S------------------------
----------------------S------------S--------------------------------------------
---------------------------------------------------------------S----------------
------S---------S-------------------S-S-----------------------SS---S---------S--
-------S------------------------------------------------------------------------
----------------------S-------------S-------------------------------------------
-----------------S------------------------------------------------------------S-
---------------------------S--------S-------S-----------------------------SS----
--------SSS---S-------------------------S---------SS-SS-SS-SSSSSSS-SSS----SSS---
SSSSSSSSSSSSSSS-SSSSSSSSSS-SS-SS-S-SSS-SS-SS--SSSS-S-SSSSSS-SS-SS-SSS-S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-S-------------------------SS---
----------------------------------------------------------------S-SSSSSSS-------
--------------------------------------------------------------------------S--S--
S-------S-----------------------------------------------------------S-SS--------
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----------S-----------S---------------------------------------------S--S--S---S-
-S-------------------------------------------------S------------------------S---
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---------------------------------------SS---------------------------------------
-----S--------------------S--------------------SSSSSS-------------S-------------
------------------------------------------------------------------------------S-
-----------SS-SS--SSSSSSSSSSSSS----------------------------SSSSSSSSSSSS
>forward_258
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------------------------------------------------------------------------------GC
CTGTGCTAATCGTGCATG--------------------------------------------------------------
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>reverse_1397
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------------------------------------CGGTGGGGACTACATTACCG------------------------
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>forward_1009
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-----------------------------AGACAGCAACGACACCTAGC-------------------------------
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>reverse_1858
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-----------------GGAGTCTGGATCGACACAGC-------------------------------------------
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