Multiple sequence alignment - TraesCS3A01G506000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G506000 chr3A 100.000 3548 0 0 1 3548 727876138 727879685 0.000000e+00 6553.0
1 TraesCS3A01G506000 chr3A 98.214 280 2 2 1 278 724394233 724394511 1.480000e-133 486.0
2 TraesCS3A01G506000 chr3A 80.508 236 28 7 2551 2774 32143263 32143034 7.880000e-37 165.0
3 TraesCS3A01G506000 chr3A 90.909 55 4 1 2793 2846 700231934 700231880 4.910000e-09 73.1
4 TraesCS3A01G506000 chr3D 90.312 1218 79 16 1365 2552 597939382 597940590 0.000000e+00 1559.0
5 TraesCS3A01G506000 chr3D 88.348 678 40 7 651 1308 597938658 597939316 0.000000e+00 778.0
6 TraesCS3A01G506000 chr3D 91.250 400 30 4 269 663 597938077 597938476 1.120000e-149 540.0
7 TraesCS3A01G506000 chr3D 78.723 235 32 11 2555 2780 503186444 503186219 1.330000e-29 141.0
8 TraesCS3A01G506000 chr4D 90.303 660 58 4 2892 3548 370630005 370630661 0.000000e+00 859.0
9 TraesCS3A01G506000 chr4D 77.778 243 30 12 2553 2780 255989409 255989176 1.030000e-25 128.0
10 TraesCS3A01G506000 chr3B 89.398 698 45 6 1683 2351 804561401 804562098 0.000000e+00 852.0
11 TraesCS3A01G506000 chr3B 83.146 890 89 37 762 1615 804560510 804561374 0.000000e+00 756.0
12 TraesCS3A01G506000 chr3B 98.221 281 1 3 1 278 369041634 369041355 4.120000e-134 488.0
13 TraesCS3A01G506000 chr3B 89.809 157 15 1 2383 2539 804562097 804562252 2.160000e-47 200.0
14 TraesCS3A01G506000 chr3B 93.684 95 5 1 2116 2210 804584344 804584437 1.330000e-29 141.0
15 TraesCS3A01G506000 chr5A 89.640 666 57 6 2892 3548 398730656 398731318 0.000000e+00 837.0
16 TraesCS3A01G506000 chr5A 87.215 657 73 6 2895 3548 232668527 232667879 0.000000e+00 737.0
17 TraesCS3A01G506000 chr5A 83.761 234 16 10 2556 2774 144389190 144389416 6.010000e-48 202.0
18 TraesCS3A01G506000 chr5A 79.574 235 30 13 2556 2780 24776958 24777184 6.130000e-33 152.0
19 TraesCS3A01G506000 chr2B 88.432 657 68 5 2895 3548 53752801 53752150 0.000000e+00 785.0
20 TraesCS3A01G506000 chr2B 87.348 656 75 5 2896 3548 53779920 53779270 0.000000e+00 745.0
21 TraesCS3A01G506000 chrUn 87.009 662 78 4 2892 3548 97052220 97052878 0.000000e+00 739.0
22 TraesCS3A01G506000 chrUn 98.524 271 1 2 1 269 328766 328497 3.210000e-130 475.0
23 TraesCS3A01G506000 chr4A 87.195 656 72 9 2895 3548 45327297 45326652 0.000000e+00 736.0
24 TraesCS3A01G506000 chr4A 98.529 272 1 2 1 270 13339476 13339746 8.910000e-131 477.0
25 TraesCS3A01G506000 chr4A 79.747 237 27 8 2556 2778 104373054 104373283 6.130000e-33 152.0
26 TraesCS3A01G506000 chr5D 86.910 657 76 7 2895 3548 420451379 420450730 0.000000e+00 728.0
27 TraesCS3A01G506000 chr5D 80.446 808 107 30 2788 3548 18425187 18425990 1.430000e-158 569.0
28 TraesCS3A01G506000 chr7D 85.909 660 82 10 2895 3548 420443299 420442645 0.000000e+00 693.0
29 TraesCS3A01G506000 chr6B 98.182 275 1 3 1 272 246709987 246710260 8.910000e-131 477.0
30 TraesCS3A01G506000 chr5B 96.564 291 4 4 1 287 399794525 399794813 8.910000e-131 477.0
31 TraesCS3A01G506000 chr2A 97.842 278 3 2 1 276 354044961 354045237 8.910000e-131 477.0
32 TraesCS3A01G506000 chr2A 97.143 280 4 3 1 278 608867066 608866789 1.490000e-128 470.0
33 TraesCS3A01G506000 chr2A 96.528 288 1 5 1 282 349714567 349714283 5.360000e-128 468.0
34 TraesCS3A01G506000 chr2A 79.498 239 28 8 2554 2778 528661696 528661927 2.210000e-32 150.0
35 TraesCS3A01G506000 chr6A 79.747 237 27 8 2556 2778 115182298 115182527 6.130000e-33 152.0
36 TraesCS3A01G506000 chr1A 77.083 240 35 15 2555 2780 21407663 21407896 1.730000e-23 121.0
37 TraesCS3A01G506000 chr7A 76.056 213 29 17 2556 2754 726263105 726262901 1.360000e-14 91.6
38 TraesCS3A01G506000 chr7A 74.648 213 32 17 2556 2754 726333826 726333622 1.370000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G506000 chr3A 727876138 727879685 3547 False 6553.000000 6553 100.000 1 3548 1 chr3A.!!$F2 3547
1 TraesCS3A01G506000 chr3D 597938077 597940590 2513 False 959.000000 1559 89.970 269 2552 3 chr3D.!!$F1 2283
2 TraesCS3A01G506000 chr4D 370630005 370630661 656 False 859.000000 859 90.303 2892 3548 1 chr4D.!!$F1 656
3 TraesCS3A01G506000 chr3B 804560510 804562252 1742 False 602.666667 852 87.451 762 2539 3 chr3B.!!$F2 1777
4 TraesCS3A01G506000 chr5A 398730656 398731318 662 False 837.000000 837 89.640 2892 3548 1 chr5A.!!$F3 656
5 TraesCS3A01G506000 chr5A 232667879 232668527 648 True 737.000000 737 87.215 2895 3548 1 chr5A.!!$R1 653
6 TraesCS3A01G506000 chr2B 53752150 53752801 651 True 785.000000 785 88.432 2895 3548 1 chr2B.!!$R1 653
7 TraesCS3A01G506000 chr2B 53779270 53779920 650 True 745.000000 745 87.348 2896 3548 1 chr2B.!!$R2 652
8 TraesCS3A01G506000 chrUn 97052220 97052878 658 False 739.000000 739 87.009 2892 3548 1 chrUn.!!$F1 656
9 TraesCS3A01G506000 chr4A 45326652 45327297 645 True 736.000000 736 87.195 2895 3548 1 chr4A.!!$R1 653
10 TraesCS3A01G506000 chr5D 420450730 420451379 649 True 728.000000 728 86.910 2895 3548 1 chr5D.!!$R1 653
11 TraesCS3A01G506000 chr5D 18425187 18425990 803 False 569.000000 569 80.446 2788 3548 1 chr5D.!!$F1 760
12 TraesCS3A01G506000 chr7D 420442645 420443299 654 True 693.000000 693 85.909 2895 3548 1 chr7D.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.038526 AAGGAAATCGAGTGTCGCGT 60.039 50.0 5.77 0.0 40.21 6.01 F
1004 1228 0.033504 TCTCCTTGCTCCACGACAAC 59.966 55.0 0.00 0.0 0.00 3.32 F
1669 1940 0.247736 TTTTGTGCTTGGCGTTGGTT 59.752 45.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1468 0.324738 AGAACAGGAGCATCGGGAGA 60.325 55.0 0.00 0.00 46.90 3.71 R
2371 2676 0.039165 GAAAACAGAAAGGCGGCTGG 60.039 55.0 14.21 5.41 36.47 4.85 R
3010 3353 0.831307 AAGGAAGGCGATGGAGGTAC 59.169 55.0 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.497291 TGGACAAGAAACTTGGTACTGT 57.503 40.909 14.51 0.00 0.00 3.55
23 24 4.448210 TGGACAAGAAACTTGGTACTGTC 58.552 43.478 14.51 4.11 0.00 3.51
24 25 3.493503 GGACAAGAAACTTGGTACTGTCG 59.506 47.826 14.51 0.00 0.00 4.35
25 26 4.117685 GACAAGAAACTTGGTACTGTCGT 58.882 43.478 14.51 0.00 0.00 4.34
26 27 3.869246 ACAAGAAACTTGGTACTGTCGTG 59.131 43.478 14.51 0.00 0.00 4.35
27 28 2.480845 AGAAACTTGGTACTGTCGTGC 58.519 47.619 0.00 0.00 0.00 5.34
28 29 2.159014 AGAAACTTGGTACTGTCGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
29 30 2.319136 AACTTGGTACTGTCGTGCAA 57.681 45.000 0.00 0.00 0.00 4.08
30 31 1.865865 ACTTGGTACTGTCGTGCAAG 58.134 50.000 0.00 0.00 0.00 4.01
31 32 1.148310 CTTGGTACTGTCGTGCAAGG 58.852 55.000 0.00 0.00 0.00 3.61
32 33 0.466543 TTGGTACTGTCGTGCAAGGT 59.533 50.000 0.00 0.00 0.00 3.50
33 34 1.330234 TGGTACTGTCGTGCAAGGTA 58.670 50.000 0.00 0.00 0.00 3.08
34 35 1.271379 TGGTACTGTCGTGCAAGGTAG 59.729 52.381 0.00 1.37 0.00 3.18
35 36 1.542915 GGTACTGTCGTGCAAGGTAGA 59.457 52.381 0.00 0.00 0.00 2.59
36 37 2.415625 GGTACTGTCGTGCAAGGTAGAG 60.416 54.545 0.00 0.00 0.00 2.43
37 38 0.603569 ACTGTCGTGCAAGGTAGAGG 59.396 55.000 0.00 0.00 0.00 3.69
38 39 0.603569 CTGTCGTGCAAGGTAGAGGT 59.396 55.000 0.00 0.00 0.00 3.85
39 40 1.816835 CTGTCGTGCAAGGTAGAGGTA 59.183 52.381 0.00 0.00 0.00 3.08
40 41 1.816835 TGTCGTGCAAGGTAGAGGTAG 59.183 52.381 0.00 0.00 0.00 3.18
41 42 1.134560 GTCGTGCAAGGTAGAGGTAGG 59.865 57.143 0.00 0.00 0.00 3.18
42 43 1.005097 TCGTGCAAGGTAGAGGTAGGA 59.995 52.381 0.00 0.00 0.00 2.94
43 44 1.405821 CGTGCAAGGTAGAGGTAGGAG 59.594 57.143 0.00 0.00 0.00 3.69
44 45 2.736347 GTGCAAGGTAGAGGTAGGAGA 58.264 52.381 0.00 0.00 0.00 3.71
45 46 3.097614 GTGCAAGGTAGAGGTAGGAGAA 58.902 50.000 0.00 0.00 0.00 2.87
46 47 3.514309 GTGCAAGGTAGAGGTAGGAGAAA 59.486 47.826 0.00 0.00 0.00 2.52
47 48 4.162509 GTGCAAGGTAGAGGTAGGAGAAAT 59.837 45.833 0.00 0.00 0.00 2.17
48 49 5.363005 GTGCAAGGTAGAGGTAGGAGAAATA 59.637 44.000 0.00 0.00 0.00 1.40
49 50 5.598830 TGCAAGGTAGAGGTAGGAGAAATAG 59.401 44.000 0.00 0.00 0.00 1.73
50 51 5.011227 GCAAGGTAGAGGTAGGAGAAATAGG 59.989 48.000 0.00 0.00 0.00 2.57
51 52 6.374588 CAAGGTAGAGGTAGGAGAAATAGGA 58.625 44.000 0.00 0.00 0.00 2.94
52 53 6.208840 AGGTAGAGGTAGGAGAAATAGGAG 57.791 45.833 0.00 0.00 0.00 3.69
53 54 5.918277 AGGTAGAGGTAGGAGAAATAGGAGA 59.082 44.000 0.00 0.00 0.00 3.71
54 55 6.568823 AGGTAGAGGTAGGAGAAATAGGAGAT 59.431 42.308 0.00 0.00 0.00 2.75
55 56 7.744998 AGGTAGAGGTAGGAGAAATAGGAGATA 59.255 40.741 0.00 0.00 0.00 1.98
56 57 8.392479 GGTAGAGGTAGGAGAAATAGGAGATAA 58.608 40.741 0.00 0.00 0.00 1.75
57 58 9.810870 GTAGAGGTAGGAGAAATAGGAGATAAA 57.189 37.037 0.00 0.00 0.00 1.40
59 60 9.374711 AGAGGTAGGAGAAATAGGAGATAAAAG 57.625 37.037 0.00 0.00 0.00 2.27
60 61 7.969004 AGGTAGGAGAAATAGGAGATAAAAGC 58.031 38.462 0.00 0.00 0.00 3.51
61 62 7.569111 AGGTAGGAGAAATAGGAGATAAAAGCA 59.431 37.037 0.00 0.00 0.00 3.91
62 63 8.379331 GGTAGGAGAAATAGGAGATAAAAGCAT 58.621 37.037 0.00 0.00 0.00 3.79
63 64 9.213799 GTAGGAGAAATAGGAGATAAAAGCATG 57.786 37.037 0.00 0.00 0.00 4.06
64 65 6.714356 AGGAGAAATAGGAGATAAAAGCATGC 59.286 38.462 10.51 10.51 0.00 4.06
65 66 6.488006 GGAGAAATAGGAGATAAAAGCATGCA 59.512 38.462 21.98 0.00 0.00 3.96
66 67 7.176340 GGAGAAATAGGAGATAAAAGCATGCAT 59.824 37.037 21.98 4.57 0.00 3.96
67 68 7.883217 AGAAATAGGAGATAAAAGCATGCATG 58.117 34.615 22.70 22.70 0.00 4.06
68 69 6.585695 AATAGGAGATAAAAGCATGCATGG 57.414 37.500 27.34 10.03 0.00 3.66
69 70 3.907221 AGGAGATAAAAGCATGCATGGT 58.093 40.909 25.20 25.20 40.78 3.55
70 71 3.635373 AGGAGATAAAAGCATGCATGGTG 59.365 43.478 30.51 6.81 38.70 4.17
71 72 3.243636 GGAGATAAAAGCATGCATGGTGG 60.244 47.826 30.51 4.66 38.70 4.61
72 73 2.696707 AGATAAAAGCATGCATGGTGGG 59.303 45.455 30.51 4.24 38.70 4.61
73 74 2.228545 TAAAAGCATGCATGGTGGGA 57.771 45.000 30.51 16.03 38.70 4.37
74 75 0.899720 AAAAGCATGCATGGTGGGAG 59.100 50.000 30.51 2.66 38.70 4.30
75 76 0.040058 AAAGCATGCATGGTGGGAGA 59.960 50.000 30.51 0.00 38.70 3.71
76 77 0.040058 AAGCATGCATGGTGGGAGAA 59.960 50.000 30.51 0.00 38.70 2.87
77 78 0.395311 AGCATGCATGGTGGGAGAAG 60.395 55.000 29.45 0.00 37.10 2.85
78 79 1.389609 GCATGCATGGTGGGAGAAGG 61.390 60.000 27.34 0.00 0.00 3.46
79 80 0.256752 CATGCATGGTGGGAGAAGGA 59.743 55.000 19.40 0.00 0.00 3.36
80 81 1.002069 ATGCATGGTGGGAGAAGGAA 58.998 50.000 0.00 0.00 0.00 3.36
81 82 0.776810 TGCATGGTGGGAGAAGGAAA 59.223 50.000 0.00 0.00 0.00 3.13
82 83 1.358787 TGCATGGTGGGAGAAGGAAAT 59.641 47.619 0.00 0.00 0.00 2.17
83 84 2.027385 GCATGGTGGGAGAAGGAAATC 58.973 52.381 0.00 0.00 0.00 2.17
84 85 2.292267 CATGGTGGGAGAAGGAAATCG 58.708 52.381 0.00 0.00 0.00 3.34
85 86 1.651737 TGGTGGGAGAAGGAAATCGA 58.348 50.000 0.00 0.00 0.00 3.59
86 87 1.555075 TGGTGGGAGAAGGAAATCGAG 59.445 52.381 0.00 0.00 0.00 4.04
87 88 1.555533 GGTGGGAGAAGGAAATCGAGT 59.444 52.381 0.00 0.00 0.00 4.18
88 89 2.622436 GTGGGAGAAGGAAATCGAGTG 58.378 52.381 0.00 0.00 0.00 3.51
89 90 2.028020 GTGGGAGAAGGAAATCGAGTGT 60.028 50.000 0.00 0.00 0.00 3.55
90 91 2.233922 TGGGAGAAGGAAATCGAGTGTC 59.766 50.000 0.00 0.00 0.00 3.67
91 92 2.531206 GGAGAAGGAAATCGAGTGTCG 58.469 52.381 0.00 0.00 42.10 4.35
92 93 1.921230 GAGAAGGAAATCGAGTGTCGC 59.079 52.381 0.00 0.00 40.21 5.19
93 94 0.640768 GAAGGAAATCGAGTGTCGCG 59.359 55.000 0.00 0.00 40.21 5.87
94 95 0.038526 AAGGAAATCGAGTGTCGCGT 60.039 50.000 5.77 0.00 40.21 6.01
95 96 0.732880 AGGAAATCGAGTGTCGCGTG 60.733 55.000 5.77 0.00 40.21 5.34
96 97 1.683790 GGAAATCGAGTGTCGCGTGG 61.684 60.000 5.77 0.00 40.21 4.94
97 98 1.006571 AAATCGAGTGTCGCGTGGT 60.007 52.632 5.77 0.00 40.21 4.16
98 99 0.241749 AAATCGAGTGTCGCGTGGTA 59.758 50.000 5.77 0.00 40.21 3.25
99 100 0.179171 AATCGAGTGTCGCGTGGTAG 60.179 55.000 5.77 0.00 40.21 3.18
100 101 2.594119 ATCGAGTGTCGCGTGGTAGC 62.594 60.000 5.77 0.00 40.21 3.58
101 102 2.567049 GAGTGTCGCGTGGTAGCT 59.433 61.111 5.77 0.00 34.40 3.32
102 103 1.514443 GAGTGTCGCGTGGTAGCTC 60.514 63.158 5.77 3.23 34.40 4.09
103 104 2.196382 GAGTGTCGCGTGGTAGCTCA 62.196 60.000 5.77 0.00 34.40 4.26
104 105 1.801913 GTGTCGCGTGGTAGCTCAG 60.802 63.158 5.77 0.00 34.40 3.35
105 106 1.969589 TGTCGCGTGGTAGCTCAGA 60.970 57.895 5.77 0.00 34.40 3.27
106 107 1.514443 GTCGCGTGGTAGCTCAGAC 60.514 63.158 5.77 0.00 34.40 3.51
107 108 1.969589 TCGCGTGGTAGCTCAGACA 60.970 57.895 5.77 0.00 34.40 3.41
108 109 1.139734 CGCGTGGTAGCTCAGACAT 59.860 57.895 0.00 0.00 34.40 3.06
109 110 1.142185 CGCGTGGTAGCTCAGACATG 61.142 60.000 0.00 0.00 34.40 3.21
110 111 0.807667 GCGTGGTAGCTCAGACATGG 60.808 60.000 0.00 0.00 0.00 3.66
111 112 0.817654 CGTGGTAGCTCAGACATGGA 59.182 55.000 0.00 0.00 0.00 3.41
112 113 1.202348 CGTGGTAGCTCAGACATGGAG 60.202 57.143 0.00 0.00 35.47 3.86
113 114 1.827969 GTGGTAGCTCAGACATGGAGT 59.172 52.381 0.00 0.00 34.83 3.85
114 115 1.827344 TGGTAGCTCAGACATGGAGTG 59.173 52.381 0.00 0.00 34.83 3.51
115 116 1.827969 GGTAGCTCAGACATGGAGTGT 59.172 52.381 0.00 0.00 45.83 3.55
116 117 2.417924 GGTAGCTCAGACATGGAGTGTG 60.418 54.545 0.00 0.00 42.36 3.82
117 118 0.612229 AGCTCAGACATGGAGTGTGG 59.388 55.000 0.00 0.00 42.36 4.17
118 119 0.610174 GCTCAGACATGGAGTGTGGA 59.390 55.000 0.00 0.00 42.36 4.02
119 120 1.002430 GCTCAGACATGGAGTGTGGAA 59.998 52.381 0.00 0.00 42.36 3.53
120 121 2.934364 GCTCAGACATGGAGTGTGGAAG 60.934 54.545 0.00 0.00 42.36 3.46
121 122 2.564504 CTCAGACATGGAGTGTGGAAGA 59.435 50.000 0.00 0.00 42.36 2.87
122 123 2.972021 TCAGACATGGAGTGTGGAAGAA 59.028 45.455 0.00 0.00 42.36 2.52
123 124 3.390967 TCAGACATGGAGTGTGGAAGAAA 59.609 43.478 0.00 0.00 42.36 2.52
124 125 3.750130 CAGACATGGAGTGTGGAAGAAAG 59.250 47.826 0.00 0.00 42.36 2.62
125 126 3.648067 AGACATGGAGTGTGGAAGAAAGA 59.352 43.478 0.00 0.00 42.36 2.52
126 127 3.744660 ACATGGAGTGTGGAAGAAAGAC 58.255 45.455 0.00 0.00 40.28 3.01
127 128 3.136443 ACATGGAGTGTGGAAGAAAGACA 59.864 43.478 0.00 0.00 40.28 3.41
128 129 3.924114 TGGAGTGTGGAAGAAAGACAA 57.076 42.857 0.00 0.00 0.00 3.18
129 130 4.437682 TGGAGTGTGGAAGAAAGACAAT 57.562 40.909 0.00 0.00 0.00 2.71
130 131 4.136796 TGGAGTGTGGAAGAAAGACAATG 58.863 43.478 0.00 0.00 0.00 2.82
131 132 4.141505 TGGAGTGTGGAAGAAAGACAATGA 60.142 41.667 0.00 0.00 0.00 2.57
132 133 4.214332 GGAGTGTGGAAGAAAGACAATGAC 59.786 45.833 0.00 0.00 0.00 3.06
133 134 3.809832 AGTGTGGAAGAAAGACAATGACG 59.190 43.478 0.00 0.00 0.00 4.35
134 135 3.807622 GTGTGGAAGAAAGACAATGACGA 59.192 43.478 0.00 0.00 0.00 4.20
135 136 4.058124 TGTGGAAGAAAGACAATGACGAG 58.942 43.478 0.00 0.00 0.00 4.18
136 137 4.202212 TGTGGAAGAAAGACAATGACGAGA 60.202 41.667 0.00 0.00 0.00 4.04
137 138 4.932200 GTGGAAGAAAGACAATGACGAGAT 59.068 41.667 0.00 0.00 0.00 2.75
138 139 4.931601 TGGAAGAAAGACAATGACGAGATG 59.068 41.667 0.00 0.00 0.00 2.90
139 140 4.932200 GGAAGAAAGACAATGACGAGATGT 59.068 41.667 0.00 0.00 0.00 3.06
140 141 6.100004 GGAAGAAAGACAATGACGAGATGTA 58.900 40.000 0.00 0.00 0.00 2.29
141 142 6.758886 GGAAGAAAGACAATGACGAGATGTAT 59.241 38.462 0.00 0.00 0.00 2.29
142 143 7.254252 GGAAGAAAGACAATGACGAGATGTATG 60.254 40.741 0.00 0.00 0.00 2.39
143 144 6.634805 AGAAAGACAATGACGAGATGTATGT 58.365 36.000 0.00 0.00 0.00 2.29
144 145 7.772166 AGAAAGACAATGACGAGATGTATGTA 58.228 34.615 0.00 0.00 0.00 2.29
145 146 7.702772 AGAAAGACAATGACGAGATGTATGTAC 59.297 37.037 0.00 0.00 0.00 2.90
146 147 5.833082 AGACAATGACGAGATGTATGTACC 58.167 41.667 0.00 0.00 0.00 3.34
147 148 5.594725 AGACAATGACGAGATGTATGTACCT 59.405 40.000 0.00 0.00 0.00 3.08
148 149 6.771267 AGACAATGACGAGATGTATGTACCTA 59.229 38.462 0.00 0.00 0.00 3.08
149 150 6.736123 ACAATGACGAGATGTATGTACCTAC 58.264 40.000 1.66 1.66 0.00 3.18
150 151 6.546403 ACAATGACGAGATGTATGTACCTACT 59.454 38.462 9.35 0.00 0.00 2.57
151 152 7.718314 ACAATGACGAGATGTATGTACCTACTA 59.282 37.037 9.35 0.00 0.00 1.82
152 153 7.908827 ATGACGAGATGTATGTACCTACTAG 57.091 40.000 9.35 0.00 0.00 2.57
153 154 7.059202 TGACGAGATGTATGTACCTACTAGA 57.941 40.000 9.35 0.00 0.00 2.43
154 155 7.677892 TGACGAGATGTATGTACCTACTAGAT 58.322 38.462 9.35 0.00 0.00 1.98
155 156 7.818446 TGACGAGATGTATGTACCTACTAGATC 59.182 40.741 9.35 4.95 0.00 2.75
156 157 7.677892 ACGAGATGTATGTACCTACTAGATCA 58.322 38.462 9.35 0.00 0.00 2.92
157 158 8.322828 ACGAGATGTATGTACCTACTAGATCAT 58.677 37.037 9.35 0.00 0.00 2.45
158 159 8.608317 CGAGATGTATGTACCTACTAGATCATG 58.392 40.741 9.35 0.00 0.00 3.07
159 160 9.674068 GAGATGTATGTACCTACTAGATCATGA 57.326 37.037 0.00 0.00 0.00 3.07
160 161 9.456147 AGATGTATGTACCTACTAGATCATGAC 57.544 37.037 0.00 0.00 0.00 3.06
161 162 7.997773 TGTATGTACCTACTAGATCATGACC 57.002 40.000 0.00 0.00 0.00 4.02
162 163 7.523415 TGTATGTACCTACTAGATCATGACCA 58.477 38.462 0.00 0.00 0.00 4.02
163 164 8.170730 TGTATGTACCTACTAGATCATGACCAT 58.829 37.037 0.00 0.00 0.00 3.55
164 165 6.901081 TGTACCTACTAGATCATGACCATG 57.099 41.667 0.00 3.70 40.09 3.66
176 177 5.688814 TCATGACCATGAGATATCATCCC 57.311 43.478 8.49 0.00 42.42 3.85
177 178 5.095809 TCATGACCATGAGATATCATCCCA 58.904 41.667 8.49 0.00 42.42 4.37
178 179 5.729718 TCATGACCATGAGATATCATCCCAT 59.270 40.000 8.49 1.88 42.42 4.00
179 180 6.904654 TCATGACCATGAGATATCATCCCATA 59.095 38.462 8.49 0.00 42.42 2.74
180 181 7.403813 TCATGACCATGAGATATCATCCCATAA 59.596 37.037 8.49 0.00 42.42 1.90
181 182 7.572546 TGACCATGAGATATCATCCCATAAA 57.427 36.000 5.32 0.00 0.00 1.40
182 183 7.987820 TGACCATGAGATATCATCCCATAAAA 58.012 34.615 5.32 0.00 0.00 1.52
183 184 8.447200 TGACCATGAGATATCATCCCATAAAAA 58.553 33.333 5.32 0.00 0.00 1.94
202 203 4.796038 AAAATGGCCTTTGACTCTCATG 57.204 40.909 3.32 0.00 0.00 3.07
203 204 3.446442 AATGGCCTTTGACTCTCATGT 57.554 42.857 3.32 0.00 0.00 3.21
204 205 2.479566 TGGCCTTTGACTCTCATGTC 57.520 50.000 3.32 0.00 37.47 3.06
205 206 1.699083 TGGCCTTTGACTCTCATGTCA 59.301 47.619 3.32 0.00 44.17 3.58
206 207 2.079925 GGCCTTTGACTCTCATGTCAC 58.920 52.381 0.00 0.00 45.32 3.67
207 208 2.550855 GGCCTTTGACTCTCATGTCACA 60.551 50.000 0.00 0.00 45.32 3.58
208 209 3.341823 GCCTTTGACTCTCATGTCACAT 58.658 45.455 0.00 0.00 45.32 3.21
209 210 3.126514 GCCTTTGACTCTCATGTCACATG 59.873 47.826 11.96 11.96 45.32 3.21
210 211 4.572909 CCTTTGACTCTCATGTCACATGA 58.427 43.478 19.57 19.57 45.32 3.07
211 212 4.999311 CCTTTGACTCTCATGTCACATGAA 59.001 41.667 20.99 11.23 45.32 2.57
212 213 5.646793 CCTTTGACTCTCATGTCACATGAAT 59.353 40.000 20.99 9.90 45.32 2.57
213 214 6.150641 CCTTTGACTCTCATGTCACATGAATT 59.849 38.462 20.99 8.37 45.32 2.17
214 215 7.309012 CCTTTGACTCTCATGTCACATGAATTT 60.309 37.037 20.99 8.02 45.32 1.82
215 216 7.514784 TTGACTCTCATGTCACATGAATTTT 57.485 32.000 20.99 6.28 45.32 1.82
216 217 7.137490 TGACTCTCATGTCACATGAATTTTC 57.863 36.000 20.99 14.44 41.43 2.29
217 218 6.938596 TGACTCTCATGTCACATGAATTTTCT 59.061 34.615 20.99 1.44 41.43 2.52
218 219 7.118825 TGACTCTCATGTCACATGAATTTTCTC 59.881 37.037 20.99 10.21 41.43 2.87
219 220 7.166851 ACTCTCATGTCACATGAATTTTCTCT 58.833 34.615 20.99 0.00 0.00 3.10
220 221 7.664731 ACTCTCATGTCACATGAATTTTCTCTT 59.335 33.333 20.99 0.00 0.00 2.85
221 222 8.400184 TCTCATGTCACATGAATTTTCTCTTT 57.600 30.769 20.99 0.00 0.00 2.52
222 223 9.506018 TCTCATGTCACATGAATTTTCTCTTTA 57.494 29.630 20.99 0.00 0.00 1.85
249 250 4.957759 ATATTTGTTAGTCCGTGGCAAC 57.042 40.909 0.00 0.00 0.00 4.17
260 261 4.539083 TGGCAACGCACGGACACT 62.539 61.111 0.00 0.00 42.51 3.55
261 262 3.276846 GGCAACGCACGGACACTT 61.277 61.111 0.00 0.00 0.00 3.16
262 263 1.957186 GGCAACGCACGGACACTTA 60.957 57.895 0.00 0.00 0.00 2.24
263 264 1.491563 GCAACGCACGGACACTTAG 59.508 57.895 0.00 0.00 0.00 2.18
264 265 1.491563 CAACGCACGGACACTTAGC 59.508 57.895 0.00 0.00 0.00 3.09
265 266 0.944311 CAACGCACGGACACTTAGCT 60.944 55.000 0.00 0.00 0.00 3.32
266 267 0.599558 AACGCACGGACACTTAGCTA 59.400 50.000 0.00 0.00 0.00 3.32
267 268 0.170561 ACGCACGGACACTTAGCTAG 59.829 55.000 0.00 0.00 0.00 3.42
290 291 9.640963 CTAGTAATATATAGGTCCTGTTGCAAC 57.359 37.037 22.83 22.83 0.00 4.17
305 306 0.308376 GCAACGCACGGGTCTTTTTA 59.692 50.000 0.00 0.00 0.00 1.52
327 328 3.516700 ACTAGTTACACCAATAGGCGGTT 59.483 43.478 0.00 0.00 39.06 4.44
380 381 7.464830 GCTCTACGCAAAACTAATCTGATAA 57.535 36.000 0.00 0.00 38.92 1.75
409 410 6.234920 TGGTTTCCGTAATTTTCTCATCTCA 58.765 36.000 0.00 0.00 0.00 3.27
452 453 0.741915 TTTCACAGAAAACCGGCACC 59.258 50.000 0.00 0.00 0.00 5.01
458 459 1.330521 CAGAAAACCGGCACCGATATG 59.669 52.381 11.42 0.00 42.83 1.78
484 485 7.318141 GCATATATTTGTTCGGCTACCTAGTA 58.682 38.462 0.00 0.00 0.00 1.82
562 563 2.336809 GCGGACTATCTGCTCCCG 59.663 66.667 2.29 0.00 45.06 5.14
564 565 1.953017 CGGACTATCTGCTCCCGAG 59.047 63.158 0.00 0.00 42.49 4.63
594 595 5.972935 TGCTCTCGGATGAACAGTAAAATA 58.027 37.500 0.00 0.00 0.00 1.40
595 596 6.403049 TGCTCTCGGATGAACAGTAAAATAA 58.597 36.000 0.00 0.00 0.00 1.40
649 655 2.796557 AGGGAACTTTTAGCTTCCTGC 58.203 47.619 0.00 0.00 37.44 4.85
696 896 2.053627 GCAACGCTCTGTTCAAATTGG 58.946 47.619 0.00 0.00 39.29 3.16
731 931 9.506042 AATAAACCAGATCATTAGGGGATTTTT 57.494 29.630 0.00 0.00 0.00 1.94
732 932 6.796785 AACCAGATCATTAGGGGATTTTTG 57.203 37.500 0.00 0.00 0.00 2.44
737 937 4.817318 TCATTAGGGGATTTTTGGCAAC 57.183 40.909 0.00 0.00 0.00 4.17
769 969 4.748892 AGATCATTAGACAACCACGTCTG 58.251 43.478 3.88 0.00 45.79 3.51
799 1022 3.195698 GATGGCAACGACCGCTCC 61.196 66.667 0.00 0.00 42.51 4.70
800 1023 4.778143 ATGGCAACGACCGCTCCC 62.778 66.667 0.00 0.00 42.51 4.30
802 1025 3.766691 GGCAACGACCGCTCCCTA 61.767 66.667 0.00 0.00 0.00 3.53
803 1026 2.508663 GCAACGACCGCTCCCTAC 60.509 66.667 0.00 0.00 0.00 3.18
804 1027 2.202570 CAACGACCGCTCCCTACG 60.203 66.667 0.00 0.00 0.00 3.51
930 1153 1.894978 GCTCACTCCTCCCTCAGTCTT 60.895 57.143 0.00 0.00 0.00 3.01
1003 1227 0.318441 CTCTCCTTGCTCCACGACAA 59.682 55.000 0.00 0.00 0.00 3.18
1004 1228 0.033504 TCTCCTTGCTCCACGACAAC 59.966 55.000 0.00 0.00 0.00 3.32
1010 1234 4.657824 CTCCACGACAACGCCGGT 62.658 66.667 1.90 0.00 43.96 5.28
1031 1255 0.391130 TGCGTGGCAGTGGTTATCTC 60.391 55.000 0.00 0.00 33.32 2.75
1101 1349 4.778143 GAATGGTGGCGCCCGACT 62.778 66.667 26.77 4.10 36.04 4.18
1142 1401 1.503542 CTCCTTCGCGCATGCTTTT 59.496 52.632 17.13 0.00 39.65 2.27
1224 1483 1.039785 TCAGTCTCCCGATGCTCCTG 61.040 60.000 0.00 0.00 0.00 3.86
1335 1594 3.607871 TCCGCCTTGGATCACTAGA 57.392 52.632 0.00 0.00 43.74 2.43
1336 1595 2.088104 TCCGCCTTGGATCACTAGAT 57.912 50.000 0.00 0.00 43.74 1.98
1348 1607 5.109662 GATCACTAGATCGTTCCGATTGA 57.890 43.478 0.00 1.47 47.00 2.57
1349 1608 4.976224 TCACTAGATCGTTCCGATTGAA 57.024 40.909 0.00 0.00 47.00 2.69
1350 1609 5.515797 TCACTAGATCGTTCCGATTGAAT 57.484 39.130 0.00 0.00 47.00 2.57
1351 1610 6.628919 TCACTAGATCGTTCCGATTGAATA 57.371 37.500 0.00 0.00 47.00 1.75
1352 1611 7.034685 TCACTAGATCGTTCCGATTGAATAA 57.965 36.000 0.00 0.00 47.00 1.40
1353 1612 7.658261 TCACTAGATCGTTCCGATTGAATAAT 58.342 34.615 0.00 0.00 47.00 1.28
1354 1613 8.141909 TCACTAGATCGTTCCGATTGAATAATT 58.858 33.333 0.00 0.00 47.00 1.40
1355 1614 9.406828 CACTAGATCGTTCCGATTGAATAATTA 57.593 33.333 0.00 0.00 47.00 1.40
1356 1615 9.976511 ACTAGATCGTTCCGATTGAATAATTAA 57.023 29.630 0.00 0.00 47.00 1.40
1359 1618 8.648097 AGATCGTTCCGATTGAATAATTAATCG 58.352 33.333 9.97 9.97 47.00 3.34
1369 1628 9.334693 GATTGAATAATTAATCGGATGTGCTTC 57.665 33.333 0.00 0.00 0.00 3.86
1370 1629 8.450578 TTGAATAATTAATCGGATGTGCTTCT 57.549 30.769 0.00 0.00 0.00 2.85
1372 1631 8.344831 TGAATAATTAATCGGATGTGCTTCTTG 58.655 33.333 0.00 0.00 0.00 3.02
1378 1637 3.411446 TCGGATGTGCTTCTTGTGATTT 58.589 40.909 0.00 0.00 0.00 2.17
1381 1640 4.083110 CGGATGTGCTTCTTGTGATTTCTT 60.083 41.667 0.00 0.00 0.00 2.52
1382 1641 5.159209 GGATGTGCTTCTTGTGATTTCTTG 58.841 41.667 0.00 0.00 0.00 3.02
1383 1642 5.278660 GGATGTGCTTCTTGTGATTTCTTGT 60.279 40.000 0.00 0.00 0.00 3.16
1384 1643 5.173774 TGTGCTTCTTGTGATTTCTTGTC 57.826 39.130 0.00 0.00 0.00 3.18
1389 1660 5.221126 GCTTCTTGTGATTTCTTGTCTTGGT 60.221 40.000 0.00 0.00 0.00 3.67
1588 1859 3.827898 AGGTACGAGCAGAGCCGC 61.828 66.667 0.00 0.00 0.00 6.53
1608 1879 0.877071 ATCCATCGATTCGCCATTGC 59.123 50.000 0.00 0.00 0.00 3.56
1626 1897 2.203181 GGGGATGCAGAGCAGAGC 60.203 66.667 0.00 0.00 43.65 4.09
1628 1899 1.524165 GGGATGCAGAGCAGAGCAG 60.524 63.158 0.00 0.00 43.65 4.24
1629 1900 1.521141 GGATGCAGAGCAGAGCAGA 59.479 57.895 0.00 0.00 43.65 4.26
1631 1902 1.153329 ATGCAGAGCAGAGCAGAGC 60.153 57.895 0.00 0.00 43.65 4.09
1632 1903 1.900545 ATGCAGAGCAGAGCAGAGCA 61.901 55.000 0.00 0.00 43.65 4.26
1633 1904 2.101835 GCAGAGCAGAGCAGAGCAC 61.102 63.158 0.00 0.00 0.00 4.40
1635 1906 2.508887 GAGCAGAGCAGAGCACGG 60.509 66.667 0.00 0.00 0.00 4.94
1636 1907 4.079850 AGCAGAGCAGAGCACGGG 62.080 66.667 0.00 0.00 0.00 5.28
1637 1908 4.385405 GCAGAGCAGAGCACGGGT 62.385 66.667 0.00 0.00 0.00 5.28
1638 1909 3.006756 GCAGAGCAGAGCACGGGTA 62.007 63.158 0.00 0.00 0.00 3.69
1666 1937 3.182173 CACTAATTTTGTGCTTGGCGTTG 59.818 43.478 0.00 0.00 0.00 4.10
1669 1940 0.247736 TTTTGTGCTTGGCGTTGGTT 59.752 45.000 0.00 0.00 0.00 3.67
1678 1949 2.665185 GCGTTGGTTCCTGCTCGT 60.665 61.111 0.00 0.00 0.00 4.18
1851 2137 4.694982 GGCAAAGAAGAAGAGGAAGAAGAG 59.305 45.833 0.00 0.00 0.00 2.85
1855 2141 2.223803 AGAAGAGGAAGAAGAGGCGA 57.776 50.000 0.00 0.00 0.00 5.54
1987 2273 4.783621 GCCTGGGCATGTCGCTGA 62.784 66.667 6.75 0.00 41.91 4.26
2093 2379 4.717629 CGTGTCGCGCCTCTTCCA 62.718 66.667 0.00 0.00 0.00 3.53
2359 2659 1.464734 CTCTGGTTCTCGAGCCTGTA 58.535 55.000 7.81 0.00 33.52 2.74
2360 2660 1.819288 CTCTGGTTCTCGAGCCTGTAA 59.181 52.381 7.81 0.00 33.52 2.41
2361 2661 2.231478 CTCTGGTTCTCGAGCCTGTAAA 59.769 50.000 7.81 0.00 33.52 2.01
2362 2662 2.631062 TCTGGTTCTCGAGCCTGTAAAA 59.369 45.455 7.81 0.00 33.52 1.52
2363 2663 3.070446 TCTGGTTCTCGAGCCTGTAAAAA 59.930 43.478 7.81 0.00 33.52 1.94
2364 2664 3.399330 TGGTTCTCGAGCCTGTAAAAAG 58.601 45.455 7.81 0.00 32.40 2.27
2365 2665 3.070446 TGGTTCTCGAGCCTGTAAAAAGA 59.930 43.478 7.81 0.00 32.40 2.52
2369 2674 3.572682 TCTCGAGCCTGTAAAAAGAGTGA 59.427 43.478 7.81 0.00 0.00 3.41
2371 2676 4.495422 TCGAGCCTGTAAAAAGAGTGATC 58.505 43.478 0.00 0.00 0.00 2.92
2380 2685 1.557269 AAAGAGTGATCCAGCCGCCT 61.557 55.000 0.00 0.00 0.00 5.52
2381 2686 1.557269 AAGAGTGATCCAGCCGCCTT 61.557 55.000 0.00 0.00 0.00 4.35
2401 2706 4.096984 CCTTTCTGTTTTCTGAAGCTGTGT 59.903 41.667 0.00 0.00 38.58 3.72
2452 2763 2.076100 TCGCCTAAACTTGAGCATGTG 58.924 47.619 0.00 0.00 0.00 3.21
2491 2802 5.176958 GCCCACGAATATGTGTATTGTACTC 59.823 44.000 0.00 0.00 38.20 2.59
2494 2805 6.984474 CCACGAATATGTGTATTGTACTCCTT 59.016 38.462 0.00 0.00 38.20 3.36
2516 2827 9.146984 TCCTTAGATTCAAATAACACACTAACG 57.853 33.333 0.00 0.00 0.00 3.18
2527 2838 1.191647 CACACTAACGTCGTGGCTTTC 59.808 52.381 18.46 0.00 36.71 2.62
2544 2855 7.328249 CGTGGCTTTCAATAATGTTATTGTGTT 59.672 33.333 19.45 0.00 46.28 3.32
2545 2856 8.987890 GTGGCTTTCAATAATGTTATTGTGTTT 58.012 29.630 19.45 0.00 46.28 2.83
2569 2880 5.843019 TTTTCAAATACTCCCTCTGGTCT 57.157 39.130 0.00 0.00 0.00 3.85
2570 2881 5.843019 TTTCAAATACTCCCTCTGGTCTT 57.157 39.130 0.00 0.00 0.00 3.01
2571 2882 5.843019 TTCAAATACTCCCTCTGGTCTTT 57.157 39.130 0.00 0.00 0.00 2.52
2572 2883 5.843019 TCAAATACTCCCTCTGGTCTTTT 57.157 39.130 0.00 0.00 0.00 2.27
2573 2884 6.200878 TCAAATACTCCCTCTGGTCTTTTT 57.799 37.500 0.00 0.00 0.00 1.94
2574 2885 7.324388 TCAAATACTCCCTCTGGTCTTTTTA 57.676 36.000 0.00 0.00 0.00 1.52
2575 2886 7.166167 TCAAATACTCCCTCTGGTCTTTTTAC 58.834 38.462 0.00 0.00 0.00 2.01
2576 2887 6.954352 AATACTCCCTCTGGTCTTTTTACT 57.046 37.500 0.00 0.00 0.00 2.24
2577 2888 8.319146 CAAATACTCCCTCTGGTCTTTTTACTA 58.681 37.037 0.00 0.00 0.00 1.82
2578 2889 8.625467 AATACTCCCTCTGGTCTTTTTACTAT 57.375 34.615 0.00 0.00 0.00 2.12
2579 2890 6.301169 ACTCCCTCTGGTCTTTTTACTATG 57.699 41.667 0.00 0.00 0.00 2.23
2580 2891 5.785940 ACTCCCTCTGGTCTTTTTACTATGT 59.214 40.000 0.00 0.00 0.00 2.29
2581 2892 6.958192 ACTCCCTCTGGTCTTTTTACTATGTA 59.042 38.462 0.00 0.00 0.00 2.29
2582 2893 7.624077 ACTCCCTCTGGTCTTTTTACTATGTAT 59.376 37.037 0.00 0.00 0.00 2.29
2583 2894 9.144298 CTCCCTCTGGTCTTTTTACTATGTATA 57.856 37.037 0.00 0.00 0.00 1.47
2584 2895 9.670442 TCCCTCTGGTCTTTTTACTATGTATAT 57.330 33.333 0.00 0.00 0.00 0.86
2616 2927 9.607988 TTCTAAGTCAAACTTCATAACTTCACA 57.392 29.630 0.00 0.00 39.51 3.58
2617 2928 9.607988 TCTAAGTCAAACTTCATAACTTCACAA 57.392 29.630 0.00 0.00 39.51 3.33
2620 2931 8.739972 AAGTCAAACTTCATAACTTCACAAAGT 58.260 29.630 0.00 0.00 39.81 2.66
2634 2945 7.781056 ACTTCACAAAGTTTGACCATATTTGT 58.219 30.769 22.23 5.50 43.28 2.83
2635 2946 8.908903 ACTTCACAAAGTTTGACCATATTTGTA 58.091 29.630 22.23 0.92 43.28 2.41
2636 2947 9.912634 CTTCACAAAGTTTGACCATATTTGTAT 57.087 29.630 22.23 0.00 40.95 2.29
2637 2948 9.689976 TTCACAAAGTTTGACCATATTTGTATG 57.310 29.630 22.23 5.29 40.95 2.39
2638 2949 9.072375 TCACAAAGTTTGACCATATTTGTATGA 57.928 29.630 22.23 7.49 40.95 2.15
2639 2950 9.689976 CACAAAGTTTGACCATATTTGTATGAA 57.310 29.630 22.23 0.00 40.95 2.57
2663 2974 5.864418 AAAATATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
2664 2975 6.964807 AAAATATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
2665 2976 7.534723 AAAATATCAACATCTGCCATGCTAT 57.465 32.000 0.00 0.00 0.00 2.97
2666 2977 8.640063 AAAATATCAACATCTGCCATGCTATA 57.360 30.769 0.00 0.00 0.00 1.31
2667 2978 8.640063 AAATATCAACATCTGCCATGCTATAA 57.360 30.769 0.00 0.00 0.00 0.98
2668 2979 8.640063 AATATCAACATCTGCCATGCTATAAA 57.360 30.769 0.00 0.00 0.00 1.40
2669 2980 6.964807 ATCAACATCTGCCATGCTATAAAA 57.035 33.333 0.00 0.00 0.00 1.52
2670 2981 6.135290 TCAACATCTGCCATGCTATAAAAC 57.865 37.500 0.00 0.00 0.00 2.43
2671 2982 5.887598 TCAACATCTGCCATGCTATAAAACT 59.112 36.000 0.00 0.00 0.00 2.66
2672 2983 6.377996 TCAACATCTGCCATGCTATAAAACTT 59.622 34.615 0.00 0.00 0.00 2.66
2673 2984 6.780457 ACATCTGCCATGCTATAAAACTTT 57.220 33.333 0.00 0.00 0.00 2.66
2674 2985 7.880160 ACATCTGCCATGCTATAAAACTTTA 57.120 32.000 0.00 0.00 0.00 1.85
2675 2986 8.292444 ACATCTGCCATGCTATAAAACTTTAA 57.708 30.769 0.00 0.00 0.00 1.52
2676 2987 8.408601 ACATCTGCCATGCTATAAAACTTTAAG 58.591 33.333 0.00 0.00 0.00 1.85
2677 2988 7.938140 TCTGCCATGCTATAAAACTTTAAGT 57.062 32.000 0.00 0.00 0.00 2.24
2678 2989 7.985476 TCTGCCATGCTATAAAACTTTAAGTC 58.015 34.615 0.00 0.00 0.00 3.01
2679 2990 7.609918 TCTGCCATGCTATAAAACTTTAAGTCA 59.390 33.333 0.00 0.00 0.00 3.41
2680 2991 7.535139 TGCCATGCTATAAAACTTTAAGTCAC 58.465 34.615 0.00 0.00 0.00 3.67
2681 2992 6.687105 GCCATGCTATAAAACTTTAAGTCACG 59.313 38.462 0.00 0.00 0.00 4.35
2682 2993 7.413657 GCCATGCTATAAAACTTTAAGTCACGA 60.414 37.037 0.00 0.00 0.00 4.35
2683 2994 7.903431 CCATGCTATAAAACTTTAAGTCACGAC 59.097 37.037 0.00 0.00 0.00 4.34
2684 2995 7.949903 TGCTATAAAACTTTAAGTCACGACA 57.050 32.000 0.00 0.00 0.00 4.35
2685 2996 7.790000 TGCTATAAAACTTTAAGTCACGACAC 58.210 34.615 0.00 0.00 0.00 3.67
2686 2997 7.438757 TGCTATAAAACTTTAAGTCACGACACA 59.561 33.333 0.00 0.00 0.00 3.72
2687 2998 8.440833 GCTATAAAACTTTAAGTCACGACACAT 58.559 33.333 0.00 0.00 0.00 3.21
2694 3005 9.647797 AACTTTAAGTCACGACACATATATTGA 57.352 29.630 0.00 0.00 0.00 2.57
2695 3006 9.817809 ACTTTAAGTCACGACACATATATTGAT 57.182 29.630 0.00 0.00 0.00 2.57
2700 3011 9.981114 AAGTCACGACACATATATTGATATTGA 57.019 29.630 0.00 0.00 0.00 2.57
2758 3069 3.263602 GTTGGTCAAACTTTACGAGCC 57.736 47.619 0.00 0.00 35.75 4.70
2759 3070 2.876550 GTTGGTCAAACTTTACGAGCCT 59.123 45.455 0.00 0.00 35.75 4.58
2760 3071 3.202829 TGGTCAAACTTTACGAGCCTT 57.797 42.857 0.00 0.00 0.00 4.35
2761 3072 3.135994 TGGTCAAACTTTACGAGCCTTC 58.864 45.455 0.00 0.00 0.00 3.46
2762 3073 3.135994 GGTCAAACTTTACGAGCCTTCA 58.864 45.455 0.00 0.00 0.00 3.02
2763 3074 3.059120 GGTCAAACTTTACGAGCCTTCAC 60.059 47.826 0.00 0.00 0.00 3.18
2764 3075 3.808174 GTCAAACTTTACGAGCCTTCACT 59.192 43.478 0.00 0.00 0.00 3.41
2765 3076 4.272748 GTCAAACTTTACGAGCCTTCACTT 59.727 41.667 0.00 0.00 0.00 3.16
2766 3077 4.510340 TCAAACTTTACGAGCCTTCACTTC 59.490 41.667 0.00 0.00 0.00 3.01
2767 3078 3.746045 ACTTTACGAGCCTTCACTTCA 57.254 42.857 0.00 0.00 0.00 3.02
2768 3079 3.654414 ACTTTACGAGCCTTCACTTCAG 58.346 45.455 0.00 0.00 0.00 3.02
2769 3080 3.069729 ACTTTACGAGCCTTCACTTCAGT 59.930 43.478 0.00 0.00 0.00 3.41
2770 3081 3.299340 TTACGAGCCTTCACTTCAGTC 57.701 47.619 0.00 0.00 0.00 3.51
2771 3082 1.040646 ACGAGCCTTCACTTCAGTCA 58.959 50.000 0.00 0.00 0.00 3.41
2772 3083 1.412710 ACGAGCCTTCACTTCAGTCAA 59.587 47.619 0.00 0.00 0.00 3.18
2773 3084 2.158957 ACGAGCCTTCACTTCAGTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
2774 3085 2.872245 CGAGCCTTCACTTCAGTCAAAA 59.128 45.455 0.00 0.00 0.00 2.44
2775 3086 3.303395 CGAGCCTTCACTTCAGTCAAAAC 60.303 47.826 0.00 0.00 0.00 2.43
2776 3087 3.879892 GAGCCTTCACTTCAGTCAAAACT 59.120 43.478 0.00 0.00 35.60 2.66
2777 3088 5.036117 AGCCTTCACTTCAGTCAAAACTA 57.964 39.130 0.00 0.00 33.25 2.24
2778 3089 5.625150 AGCCTTCACTTCAGTCAAAACTAT 58.375 37.500 0.00 0.00 33.25 2.12
2779 3090 6.769512 AGCCTTCACTTCAGTCAAAACTATA 58.230 36.000 0.00 0.00 33.25 1.31
2780 3091 7.224297 AGCCTTCACTTCAGTCAAAACTATAA 58.776 34.615 0.00 0.00 33.25 0.98
2781 3092 7.885399 AGCCTTCACTTCAGTCAAAACTATAAT 59.115 33.333 0.00 0.00 33.25 1.28
2782 3093 7.965107 GCCTTCACTTCAGTCAAAACTATAATG 59.035 37.037 0.00 0.00 33.25 1.90
2783 3094 9.003658 CCTTCACTTCAGTCAAAACTATAATGT 57.996 33.333 0.00 0.00 33.25 2.71
2790 3101 8.697846 TCAGTCAAAACTATAATGTTAGGACG 57.302 34.615 0.00 0.00 37.77 4.79
2791 3102 8.308931 TCAGTCAAAACTATAATGTTAGGACGT 58.691 33.333 0.00 0.00 37.77 4.34
2801 3112 4.978083 ATGTTAGGACGTCGATAACTGT 57.022 40.909 28.07 19.66 31.99 3.55
2807 3118 2.351060 GGACGTCGATAACTGTCACACA 60.351 50.000 9.92 0.00 34.90 3.72
2824 3135 2.694213 CACATGTGGTGTATCGGTTGA 58.306 47.619 18.51 0.00 42.75 3.18
2832 3143 2.080693 GTGTATCGGTTGATTGTGCCA 58.919 47.619 0.00 0.00 35.99 4.92
2835 3146 1.838112 ATCGGTTGATTGTGCCACAT 58.162 45.000 0.00 0.00 0.00 3.21
2849 3161 4.481195 ACATGCCTGTGTGACACC 57.519 55.556 13.85 0.00 33.22 4.16
2854 3166 1.664965 GCCTGTGTGACACCGAGAC 60.665 63.158 13.85 0.00 32.73 3.36
2857 3169 0.660595 CTGTGTGACACCGAGACGAC 60.661 60.000 13.85 0.00 32.73 4.34
2974 3317 1.408822 GCCTCATTTCGATCCCCAGTT 60.409 52.381 0.00 0.00 0.00 3.16
3003 3346 1.946475 GCCGCCGTCTTCTACCTCTT 61.946 60.000 0.00 0.00 0.00 2.85
3010 3353 1.477295 GTCTTCTACCTCTTGACCCCG 59.523 57.143 0.00 0.00 0.00 5.73
3091 3455 2.612746 ACCGCTAACCACCCCCAT 60.613 61.111 0.00 0.00 0.00 4.00
3092 3456 2.192175 CCGCTAACCACCCCCATC 59.808 66.667 0.00 0.00 0.00 3.51
3093 3457 2.675242 CCGCTAACCACCCCCATCA 61.675 63.158 0.00 0.00 0.00 3.07
3100 3464 3.657350 CACCCCCATCAACCCCGT 61.657 66.667 0.00 0.00 0.00 5.28
3153 3517 4.276183 CGATCTCCGATCTCCTTCTGTTTA 59.724 45.833 2.76 0.00 41.76 2.01
3162 3526 5.740290 TCTCCTTCTGTTTATCGTCCTTT 57.260 39.130 0.00 0.00 0.00 3.11
3190 3555 9.388506 TCTGTCCAGAAATTTAAAATTGCAAAA 57.611 25.926 1.71 0.00 33.91 2.44
3270 3637 1.898885 TGCATTCGCATTTGCCCAT 59.101 47.368 0.00 0.00 45.36 4.00
3289 3658 3.461061 CATCAACATACGCCAGATCTGT 58.539 45.455 21.11 5.78 0.00 3.41
3306 3675 9.353431 CCAGATCTGTCATATACTATGCTAGAT 57.647 37.037 21.11 10.23 0.00 1.98
3333 3702 4.207891 CTAAGCTTCTAGGTTGGCTTGA 57.792 45.455 0.00 0.00 43.55 3.02
3337 3706 2.715046 CTTCTAGGTTGGCTTGATGCA 58.285 47.619 0.00 0.00 45.15 3.96
3405 3777 5.831103 AGAAAGGAGAAATTTGGCATAGGA 58.169 37.500 0.00 0.00 0.00 2.94
3412 3784 4.230502 AGAAATTTGGCATAGGAAGGGAGA 59.769 41.667 0.00 0.00 0.00 3.71
3413 3785 4.608170 AATTTGGCATAGGAAGGGAGAA 57.392 40.909 0.00 0.00 0.00 2.87
3414 3786 4.608170 ATTTGGCATAGGAAGGGAGAAA 57.392 40.909 0.00 0.00 0.00 2.52
3417 3789 4.608170 TGGCATAGGAAGGGAGAAAAAT 57.392 40.909 0.00 0.00 0.00 1.82
3457 3829 5.435686 TCTAACATCAGTTGCCACCTATT 57.564 39.130 0.00 0.00 38.69 1.73
3468 3840 3.945346 TGCCACCTATTGTTGTCGTTAT 58.055 40.909 0.00 0.00 0.00 1.89
3475 3847 4.335315 CCTATTGTTGTCGTTATGTGCCAT 59.665 41.667 0.00 0.00 0.00 4.40
3482 3854 3.755905 TGTCGTTATGTGCCATCATGTTT 59.244 39.130 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.850680 ACAGTACCAAGTTTCTTGTCCAA 58.149 39.130 8.37 0.00 0.00 3.53
2 3 3.493503 CGACAGTACCAAGTTTCTTGTCC 59.506 47.826 8.37 0.00 0.00 4.02
4 5 3.869246 CACGACAGTACCAAGTTTCTTGT 59.131 43.478 8.37 0.00 0.00 3.16
5 6 3.303132 GCACGACAGTACCAAGTTTCTTG 60.303 47.826 0.00 2.90 0.00 3.02
6 7 2.870411 GCACGACAGTACCAAGTTTCTT 59.130 45.455 0.00 0.00 0.00 2.52
7 8 2.159014 TGCACGACAGTACCAAGTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
8 9 2.206750 TGCACGACAGTACCAAGTTTC 58.793 47.619 0.00 0.00 0.00 2.78
9 10 2.319136 TGCACGACAGTACCAAGTTT 57.681 45.000 0.00 0.00 0.00 2.66
10 11 2.210116 CTTGCACGACAGTACCAAGTT 58.790 47.619 0.00 0.00 35.73 2.66
11 12 1.540363 CCTTGCACGACAGTACCAAGT 60.540 52.381 0.00 0.00 37.27 3.16
12 13 1.148310 CCTTGCACGACAGTACCAAG 58.852 55.000 0.00 0.00 38.01 3.61
13 14 0.466543 ACCTTGCACGACAGTACCAA 59.533 50.000 0.00 0.00 0.00 3.67
14 15 1.271379 CTACCTTGCACGACAGTACCA 59.729 52.381 0.00 0.00 0.00 3.25
15 16 1.542915 TCTACCTTGCACGACAGTACC 59.457 52.381 0.00 0.00 0.00 3.34
16 17 2.415625 CCTCTACCTTGCACGACAGTAC 60.416 54.545 0.00 0.00 0.00 2.73
17 18 1.816835 CCTCTACCTTGCACGACAGTA 59.183 52.381 0.00 0.00 0.00 2.74
18 19 0.603569 CCTCTACCTTGCACGACAGT 59.396 55.000 0.00 0.00 0.00 3.55
19 20 0.603569 ACCTCTACCTTGCACGACAG 59.396 55.000 0.00 0.00 0.00 3.51
20 21 1.816835 CTACCTCTACCTTGCACGACA 59.183 52.381 0.00 0.00 0.00 4.35
21 22 1.134560 CCTACCTCTACCTTGCACGAC 59.865 57.143 0.00 0.00 0.00 4.34
22 23 1.005097 TCCTACCTCTACCTTGCACGA 59.995 52.381 0.00 0.00 0.00 4.35
23 24 1.405821 CTCCTACCTCTACCTTGCACG 59.594 57.143 0.00 0.00 0.00 5.34
24 25 2.736347 TCTCCTACCTCTACCTTGCAC 58.264 52.381 0.00 0.00 0.00 4.57
25 26 3.468071 TTCTCCTACCTCTACCTTGCA 57.532 47.619 0.00 0.00 0.00 4.08
26 27 5.011227 CCTATTTCTCCTACCTCTACCTTGC 59.989 48.000 0.00 0.00 0.00 4.01
27 28 6.374588 TCCTATTTCTCCTACCTCTACCTTG 58.625 44.000 0.00 0.00 0.00 3.61
28 29 6.393440 TCTCCTATTTCTCCTACCTCTACCTT 59.607 42.308 0.00 0.00 0.00 3.50
29 30 5.918277 TCTCCTATTTCTCCTACCTCTACCT 59.082 44.000 0.00 0.00 0.00 3.08
30 31 6.203526 TCTCCTATTTCTCCTACCTCTACC 57.796 45.833 0.00 0.00 0.00 3.18
31 32 9.810870 TTTATCTCCTATTTCTCCTACCTCTAC 57.189 37.037 0.00 0.00 0.00 2.59
33 34 9.374711 CTTTTATCTCCTATTTCTCCTACCTCT 57.625 37.037 0.00 0.00 0.00 3.69
34 35 8.092068 GCTTTTATCTCCTATTTCTCCTACCTC 58.908 40.741 0.00 0.00 0.00 3.85
35 36 7.569111 TGCTTTTATCTCCTATTTCTCCTACCT 59.431 37.037 0.00 0.00 0.00 3.08
36 37 7.736893 TGCTTTTATCTCCTATTTCTCCTACC 58.263 38.462 0.00 0.00 0.00 3.18
37 38 9.213799 CATGCTTTTATCTCCTATTTCTCCTAC 57.786 37.037 0.00 0.00 0.00 3.18
38 39 7.880195 GCATGCTTTTATCTCCTATTTCTCCTA 59.120 37.037 11.37 0.00 0.00 2.94
39 40 6.714356 GCATGCTTTTATCTCCTATTTCTCCT 59.286 38.462 11.37 0.00 0.00 3.69
40 41 6.488006 TGCATGCTTTTATCTCCTATTTCTCC 59.512 38.462 20.33 0.00 0.00 3.71
41 42 7.502120 TGCATGCTTTTATCTCCTATTTCTC 57.498 36.000 20.33 0.00 0.00 2.87
42 43 7.039923 CCATGCATGCTTTTATCTCCTATTTCT 60.040 37.037 21.69 0.00 0.00 2.52
43 44 7.088905 CCATGCATGCTTTTATCTCCTATTTC 58.911 38.462 21.69 0.00 0.00 2.17
44 45 6.552350 ACCATGCATGCTTTTATCTCCTATTT 59.448 34.615 21.69 0.00 0.00 1.40
45 46 6.015688 CACCATGCATGCTTTTATCTCCTATT 60.016 38.462 21.69 0.00 0.00 1.73
46 47 5.475909 CACCATGCATGCTTTTATCTCCTAT 59.524 40.000 21.69 0.00 0.00 2.57
47 48 4.823442 CACCATGCATGCTTTTATCTCCTA 59.177 41.667 21.69 0.00 0.00 2.94
48 49 3.635373 CACCATGCATGCTTTTATCTCCT 59.365 43.478 21.69 0.00 0.00 3.69
49 50 3.243636 CCACCATGCATGCTTTTATCTCC 60.244 47.826 21.69 0.00 0.00 3.71
50 51 3.243636 CCCACCATGCATGCTTTTATCTC 60.244 47.826 21.69 0.00 0.00 2.75
51 52 2.696707 CCCACCATGCATGCTTTTATCT 59.303 45.455 21.69 0.00 0.00 1.98
52 53 2.694628 TCCCACCATGCATGCTTTTATC 59.305 45.455 21.69 0.00 0.00 1.75
53 54 2.696707 CTCCCACCATGCATGCTTTTAT 59.303 45.455 21.69 0.02 0.00 1.40
54 55 2.101783 CTCCCACCATGCATGCTTTTA 58.898 47.619 21.69 5.24 0.00 1.52
55 56 0.899720 CTCCCACCATGCATGCTTTT 59.100 50.000 21.69 1.86 0.00 2.27
56 57 0.040058 TCTCCCACCATGCATGCTTT 59.960 50.000 21.69 4.51 0.00 3.51
57 58 0.040058 TTCTCCCACCATGCATGCTT 59.960 50.000 21.69 10.16 0.00 3.91
58 59 0.395311 CTTCTCCCACCATGCATGCT 60.395 55.000 21.69 4.67 0.00 3.79
59 60 1.389609 CCTTCTCCCACCATGCATGC 61.390 60.000 21.69 11.82 0.00 4.06
60 61 0.256752 TCCTTCTCCCACCATGCATG 59.743 55.000 20.19 20.19 0.00 4.06
61 62 1.002069 TTCCTTCTCCCACCATGCAT 58.998 50.000 0.00 0.00 0.00 3.96
62 63 0.776810 TTTCCTTCTCCCACCATGCA 59.223 50.000 0.00 0.00 0.00 3.96
63 64 2.027385 GATTTCCTTCTCCCACCATGC 58.973 52.381 0.00 0.00 0.00 4.06
64 65 2.092968 TCGATTTCCTTCTCCCACCATG 60.093 50.000 0.00 0.00 0.00 3.66
65 66 2.171448 CTCGATTTCCTTCTCCCACCAT 59.829 50.000 0.00 0.00 0.00 3.55
66 67 1.555075 CTCGATTTCCTTCTCCCACCA 59.445 52.381 0.00 0.00 0.00 4.17
67 68 1.555533 ACTCGATTTCCTTCTCCCACC 59.444 52.381 0.00 0.00 0.00 4.61
68 69 2.028020 ACACTCGATTTCCTTCTCCCAC 60.028 50.000 0.00 0.00 0.00 4.61
69 70 2.233922 GACACTCGATTTCCTTCTCCCA 59.766 50.000 0.00 0.00 0.00 4.37
70 71 2.735762 CGACACTCGATTTCCTTCTCCC 60.736 54.545 0.00 0.00 43.74 4.30
71 72 2.531206 CGACACTCGATTTCCTTCTCC 58.469 52.381 0.00 0.00 43.74 3.71
72 73 1.921230 GCGACACTCGATTTCCTTCTC 59.079 52.381 0.00 0.00 43.74 2.87
73 74 1.732732 CGCGACACTCGATTTCCTTCT 60.733 52.381 0.00 0.00 43.74 2.85
74 75 0.640768 CGCGACACTCGATTTCCTTC 59.359 55.000 0.00 0.00 43.74 3.46
75 76 0.038526 ACGCGACACTCGATTTCCTT 60.039 50.000 15.93 0.00 43.74 3.36
76 77 0.732880 CACGCGACACTCGATTTCCT 60.733 55.000 15.93 0.00 43.74 3.36
77 78 1.683790 CCACGCGACACTCGATTTCC 61.684 60.000 15.93 0.00 43.74 3.13
78 79 1.007336 ACCACGCGACACTCGATTTC 61.007 55.000 15.93 0.00 43.74 2.17
79 80 0.241749 TACCACGCGACACTCGATTT 59.758 50.000 15.93 0.00 43.74 2.17
80 81 0.179171 CTACCACGCGACACTCGATT 60.179 55.000 15.93 0.00 43.74 3.34
81 82 1.428219 CTACCACGCGACACTCGAT 59.572 57.895 15.93 0.00 43.74 3.59
82 83 2.865308 CTACCACGCGACACTCGA 59.135 61.111 15.93 0.00 43.74 4.04
83 84 2.874780 GCTACCACGCGACACTCG 60.875 66.667 15.93 0.00 43.89 4.18
84 85 1.514443 GAGCTACCACGCGACACTC 60.514 63.158 15.93 6.84 34.40 3.51
85 86 2.201436 CTGAGCTACCACGCGACACT 62.201 60.000 15.93 0.08 34.40 3.55
86 87 1.801913 CTGAGCTACCACGCGACAC 60.802 63.158 15.93 0.00 34.40 3.67
87 88 1.969589 TCTGAGCTACCACGCGACA 60.970 57.895 15.93 0.00 34.40 4.35
88 89 1.514443 GTCTGAGCTACCACGCGAC 60.514 63.158 15.93 0.00 34.40 5.19
89 90 1.313091 ATGTCTGAGCTACCACGCGA 61.313 55.000 15.93 0.00 34.40 5.87
90 91 1.139734 ATGTCTGAGCTACCACGCG 59.860 57.895 3.53 3.53 34.40 6.01
91 92 0.807667 CCATGTCTGAGCTACCACGC 60.808 60.000 0.00 0.00 0.00 5.34
92 93 0.817654 TCCATGTCTGAGCTACCACG 59.182 55.000 0.00 0.00 0.00 4.94
93 94 1.827969 ACTCCATGTCTGAGCTACCAC 59.172 52.381 0.00 0.00 32.98 4.16
94 95 1.827344 CACTCCATGTCTGAGCTACCA 59.173 52.381 0.00 0.00 32.98 3.25
95 96 1.827969 ACACTCCATGTCTGAGCTACC 59.172 52.381 0.00 0.00 36.54 3.18
96 97 2.417924 CCACACTCCATGTCTGAGCTAC 60.418 54.545 0.00 0.00 40.64 3.58
97 98 1.827344 CCACACTCCATGTCTGAGCTA 59.173 52.381 0.00 0.00 40.64 3.32
98 99 0.612229 CCACACTCCATGTCTGAGCT 59.388 55.000 0.00 0.00 40.64 4.09
99 100 0.610174 TCCACACTCCATGTCTGAGC 59.390 55.000 0.00 0.00 40.64 4.26
100 101 2.564504 TCTTCCACACTCCATGTCTGAG 59.435 50.000 0.00 0.00 40.64 3.35
101 102 2.608623 TCTTCCACACTCCATGTCTGA 58.391 47.619 0.00 0.00 40.64 3.27
102 103 3.407424 TTCTTCCACACTCCATGTCTG 57.593 47.619 0.00 0.00 40.64 3.51
103 104 3.648067 TCTTTCTTCCACACTCCATGTCT 59.352 43.478 0.00 0.00 40.64 3.41
104 105 3.748568 GTCTTTCTTCCACACTCCATGTC 59.251 47.826 0.00 0.00 40.64 3.06
105 106 3.136443 TGTCTTTCTTCCACACTCCATGT 59.864 43.478 0.00 0.00 44.81 3.21
106 107 3.743521 TGTCTTTCTTCCACACTCCATG 58.256 45.455 0.00 0.00 0.00 3.66
107 108 4.437682 TTGTCTTTCTTCCACACTCCAT 57.562 40.909 0.00 0.00 0.00 3.41
108 109 3.924114 TTGTCTTTCTTCCACACTCCA 57.076 42.857 0.00 0.00 0.00 3.86
109 110 4.214332 GTCATTGTCTTTCTTCCACACTCC 59.786 45.833 0.00 0.00 0.00 3.85
110 111 4.084328 CGTCATTGTCTTTCTTCCACACTC 60.084 45.833 0.00 0.00 0.00 3.51
111 112 3.809832 CGTCATTGTCTTTCTTCCACACT 59.190 43.478 0.00 0.00 0.00 3.55
112 113 3.807622 TCGTCATTGTCTTTCTTCCACAC 59.192 43.478 0.00 0.00 0.00 3.82
113 114 4.058124 CTCGTCATTGTCTTTCTTCCACA 58.942 43.478 0.00 0.00 0.00 4.17
114 115 4.307432 TCTCGTCATTGTCTTTCTTCCAC 58.693 43.478 0.00 0.00 0.00 4.02
115 116 4.600692 TCTCGTCATTGTCTTTCTTCCA 57.399 40.909 0.00 0.00 0.00 3.53
116 117 4.932200 ACATCTCGTCATTGTCTTTCTTCC 59.068 41.667 0.00 0.00 0.00 3.46
117 118 7.276658 ACATACATCTCGTCATTGTCTTTCTTC 59.723 37.037 0.00 0.00 0.00 2.87
118 119 7.099764 ACATACATCTCGTCATTGTCTTTCTT 58.900 34.615 0.00 0.00 0.00 2.52
119 120 6.634805 ACATACATCTCGTCATTGTCTTTCT 58.365 36.000 0.00 0.00 0.00 2.52
120 121 6.893958 ACATACATCTCGTCATTGTCTTTC 57.106 37.500 0.00 0.00 0.00 2.62
121 122 6.757010 GGTACATACATCTCGTCATTGTCTTT 59.243 38.462 0.00 0.00 0.00 2.52
122 123 6.096987 AGGTACATACATCTCGTCATTGTCTT 59.903 38.462 0.00 0.00 0.00 3.01
123 124 5.594725 AGGTACATACATCTCGTCATTGTCT 59.405 40.000 0.00 0.00 0.00 3.41
124 125 5.833082 AGGTACATACATCTCGTCATTGTC 58.167 41.667 0.00 0.00 0.00 3.18
125 126 5.854010 AGGTACATACATCTCGTCATTGT 57.146 39.130 0.00 0.00 0.00 2.71
126 127 6.971602 AGTAGGTACATACATCTCGTCATTG 58.028 40.000 19.01 0.00 0.00 2.82
127 128 8.155510 TCTAGTAGGTACATACATCTCGTCATT 58.844 37.037 19.01 0.00 0.00 2.57
128 129 7.677892 TCTAGTAGGTACATACATCTCGTCAT 58.322 38.462 19.01 0.00 0.00 3.06
129 130 7.059202 TCTAGTAGGTACATACATCTCGTCA 57.941 40.000 19.01 0.00 0.00 4.35
130 131 7.818446 TGATCTAGTAGGTACATACATCTCGTC 59.182 40.741 19.01 9.67 0.00 4.20
131 132 7.677892 TGATCTAGTAGGTACATACATCTCGT 58.322 38.462 19.01 0.75 0.00 4.18
132 133 8.608317 CATGATCTAGTAGGTACATACATCTCG 58.392 40.741 19.01 6.08 0.00 4.04
133 134 9.674068 TCATGATCTAGTAGGTACATACATCTC 57.326 37.037 19.01 10.40 0.00 2.75
134 135 9.456147 GTCATGATCTAGTAGGTACATACATCT 57.544 37.037 19.01 2.15 0.00 2.90
135 136 8.679100 GGTCATGATCTAGTAGGTACATACATC 58.321 40.741 19.01 13.24 0.00 3.06
136 137 8.170730 TGGTCATGATCTAGTAGGTACATACAT 58.829 37.037 19.01 4.74 0.00 2.29
137 138 7.523415 TGGTCATGATCTAGTAGGTACATACA 58.477 38.462 19.01 5.30 0.00 2.29
138 139 7.997773 TGGTCATGATCTAGTAGGTACATAC 57.002 40.000 9.65 9.65 0.00 2.39
139 140 8.390921 TCATGGTCATGATCTAGTAGGTACATA 58.609 37.037 7.64 0.00 42.42 2.29
140 141 7.241628 TCATGGTCATGATCTAGTAGGTACAT 58.758 38.462 7.64 0.00 42.42 2.29
141 142 6.610830 TCATGGTCATGATCTAGTAGGTACA 58.389 40.000 7.64 0.00 42.42 2.90
142 143 6.943146 TCTCATGGTCATGATCTAGTAGGTAC 59.057 42.308 13.26 0.00 45.74 3.34
143 144 7.091533 TCTCATGGTCATGATCTAGTAGGTA 57.908 40.000 13.26 0.00 45.74 3.08
144 145 5.958321 TCTCATGGTCATGATCTAGTAGGT 58.042 41.667 13.26 0.00 45.74 3.08
145 146 8.765488 ATATCTCATGGTCATGATCTAGTAGG 57.235 38.462 13.26 1.25 45.74 3.18
146 147 9.406113 TGATATCTCATGGTCATGATCTAGTAG 57.594 37.037 13.26 0.17 45.74 2.57
147 148 9.933240 ATGATATCTCATGGTCATGATCTAGTA 57.067 33.333 13.26 4.51 45.74 1.82
148 149 8.841754 ATGATATCTCATGGTCATGATCTAGT 57.158 34.615 13.26 1.24 45.74 2.57
149 150 8.361889 GGATGATATCTCATGGTCATGATCTAG 58.638 40.741 13.26 2.63 45.74 2.43
150 151 7.289549 GGGATGATATCTCATGGTCATGATCTA 59.710 40.741 13.26 8.85 45.74 1.98
151 152 6.099990 GGGATGATATCTCATGGTCATGATCT 59.900 42.308 13.26 7.20 45.74 2.75
152 153 6.126854 TGGGATGATATCTCATGGTCATGATC 60.127 42.308 13.26 0.00 45.74 2.92
153 154 5.729718 TGGGATGATATCTCATGGTCATGAT 59.270 40.000 13.26 3.69 45.74 2.45
154 155 5.095809 TGGGATGATATCTCATGGTCATGA 58.904 41.667 12.41 12.41 42.27 3.07
155 156 5.431179 TGGGATGATATCTCATGGTCATG 57.569 43.478 3.98 4.67 42.27 3.07
180 181 4.590222 ACATGAGAGTCAAAGGCCATTTTT 59.410 37.500 5.01 0.00 0.00 1.94
181 182 4.154942 ACATGAGAGTCAAAGGCCATTTT 58.845 39.130 5.01 0.00 0.00 1.82
182 183 3.760684 GACATGAGAGTCAAAGGCCATTT 59.239 43.478 5.01 0.00 38.40 2.32
183 184 3.245016 TGACATGAGAGTCAAAGGCCATT 60.245 43.478 5.01 0.00 44.92 3.16
184 185 2.306805 TGACATGAGAGTCAAAGGCCAT 59.693 45.455 5.01 0.00 44.92 4.40
185 186 1.699083 TGACATGAGAGTCAAAGGCCA 59.301 47.619 5.01 0.00 44.92 5.36
186 187 2.479566 TGACATGAGAGTCAAAGGCC 57.520 50.000 0.00 0.00 44.92 5.19
192 193 6.938596 AGAAAATTCATGTGACATGAGAGTCA 59.061 34.615 25.20 13.00 45.64 3.41
193 194 7.333921 AGAGAAAATTCATGTGACATGAGAGTC 59.666 37.037 25.20 20.00 38.99 3.36
194 195 7.166851 AGAGAAAATTCATGTGACATGAGAGT 58.833 34.615 25.20 14.39 0.00 3.24
195 196 7.612668 AGAGAAAATTCATGTGACATGAGAG 57.387 36.000 25.20 1.38 0.00 3.20
196 197 7.991084 AAGAGAAAATTCATGTGACATGAGA 57.009 32.000 25.20 17.43 0.00 3.27
223 224 9.426837 GTTGCCACGGACTAACAAATATATATA 57.573 33.333 0.00 0.00 0.00 0.86
224 225 7.117236 CGTTGCCACGGACTAACAAATATATAT 59.883 37.037 1.68 0.00 43.16 0.86
225 226 6.421501 CGTTGCCACGGACTAACAAATATATA 59.578 38.462 1.68 0.00 43.16 0.86
226 227 5.235616 CGTTGCCACGGACTAACAAATATAT 59.764 40.000 1.68 0.00 43.16 0.86
227 228 4.567558 CGTTGCCACGGACTAACAAATATA 59.432 41.667 1.68 0.00 43.16 0.86
228 229 3.372822 CGTTGCCACGGACTAACAAATAT 59.627 43.478 1.68 0.00 43.16 1.28
229 230 2.737783 CGTTGCCACGGACTAACAAATA 59.262 45.455 1.68 0.00 43.16 1.40
230 231 1.533731 CGTTGCCACGGACTAACAAAT 59.466 47.619 1.68 0.00 43.16 2.32
231 232 0.938713 CGTTGCCACGGACTAACAAA 59.061 50.000 1.68 0.00 43.16 2.83
232 233 2.607457 CGTTGCCACGGACTAACAA 58.393 52.632 1.68 0.00 43.16 2.83
233 234 4.347096 CGTTGCCACGGACTAACA 57.653 55.556 1.68 0.00 43.16 2.41
242 243 4.307908 GTGTCCGTGCGTTGCCAC 62.308 66.667 0.00 0.00 0.00 5.01
243 244 2.646117 TAAGTGTCCGTGCGTTGCCA 62.646 55.000 0.00 0.00 0.00 4.92
244 245 1.897398 CTAAGTGTCCGTGCGTTGCC 61.897 60.000 0.00 0.00 0.00 4.52
245 246 1.491563 CTAAGTGTCCGTGCGTTGC 59.508 57.895 0.00 0.00 0.00 4.17
246 247 0.944311 AGCTAAGTGTCCGTGCGTTG 60.944 55.000 0.00 0.00 0.00 4.10
247 248 0.599558 TAGCTAAGTGTCCGTGCGTT 59.400 50.000 0.00 0.00 0.00 4.84
248 249 0.170561 CTAGCTAAGTGTCCGTGCGT 59.829 55.000 0.00 0.00 0.00 5.24
249 250 0.170561 ACTAGCTAAGTGTCCGTGCG 59.829 55.000 0.00 0.00 36.93 5.34
250 251 3.498927 TTACTAGCTAAGTGTCCGTGC 57.501 47.619 0.00 0.00 39.39 5.34
252 253 9.393512 CCTATATATTACTAGCTAAGTGTCCGT 57.606 37.037 0.00 0.00 39.39 4.69
253 254 9.393512 ACCTATATATTACTAGCTAAGTGTCCG 57.606 37.037 0.00 0.00 39.39 4.79
261 262 9.186837 GCAACAGGACCTATATATTACTAGCTA 57.813 37.037 0.00 0.00 0.00 3.32
262 263 7.674348 TGCAACAGGACCTATATATTACTAGCT 59.326 37.037 0.00 0.00 0.00 3.32
263 264 7.837863 TGCAACAGGACCTATATATTACTAGC 58.162 38.462 0.00 0.00 0.00 3.42
264 265 9.640963 GTTGCAACAGGACCTATATATTACTAG 57.359 37.037 24.52 0.00 0.00 2.57
265 266 8.301720 CGTTGCAACAGGACCTATATATTACTA 58.698 37.037 28.01 0.00 0.00 1.82
266 267 7.152645 CGTTGCAACAGGACCTATATATTACT 58.847 38.462 28.01 0.00 0.00 2.24
267 268 6.128634 GCGTTGCAACAGGACCTATATATTAC 60.129 42.308 28.01 0.00 0.00 1.89
281 282 3.521308 GACCCGTGCGTTGCAACAG 62.521 63.158 28.01 20.60 41.47 3.16
282 283 3.578272 GACCCGTGCGTTGCAACA 61.578 61.111 28.01 8.05 41.47 3.33
290 291 2.680577 ACTAGTAAAAAGACCCGTGCG 58.319 47.619 0.00 0.00 0.00 5.34
305 306 3.102204 ACCGCCTATTGGTGTAACTAGT 58.898 45.455 6.01 0.00 42.08 2.57
357 358 9.855361 CAATTATCAGATTAGTTTTGCGTAGAG 57.145 33.333 0.00 0.00 0.00 2.43
380 381 7.461182 TGAGAAAATTACGGAAACCATCAAT 57.539 32.000 0.00 0.00 0.00 2.57
428 429 3.118956 TGCCGGTTTTCTGTGAAAAATGT 60.119 39.130 1.90 0.00 31.29 2.71
452 453 5.294306 AGCCGAACAAATATATGCCATATCG 59.706 40.000 0.00 0.00 0.00 2.92
458 459 4.324267 AGGTAGCCGAACAAATATATGCC 58.676 43.478 0.00 0.00 0.00 4.40
529 530 1.048601 CCGCATCCCCTTCTAGCTAA 58.951 55.000 0.00 0.00 0.00 3.09
564 565 1.945387 TCATCCGAGAGCATTTCAGC 58.055 50.000 0.00 0.00 0.00 4.26
570 571 4.471904 TTTACTGTTCATCCGAGAGCAT 57.528 40.909 0.00 0.00 0.00 3.79
605 606 7.201911 CCTTCTAGCCGAAATTCCCATATTTTT 60.202 37.037 0.00 0.00 0.00 1.94
606 607 6.265422 CCTTCTAGCCGAAATTCCCATATTTT 59.735 38.462 0.00 0.00 0.00 1.82
610 611 3.072476 CCCTTCTAGCCGAAATTCCCATA 59.928 47.826 0.00 0.00 0.00 2.74
611 612 2.158608 CCCTTCTAGCCGAAATTCCCAT 60.159 50.000 0.00 0.00 0.00 4.00
612 613 1.211949 CCCTTCTAGCCGAAATTCCCA 59.788 52.381 0.00 0.00 0.00 4.37
613 614 1.489230 TCCCTTCTAGCCGAAATTCCC 59.511 52.381 0.00 0.00 0.00 3.97
614 615 2.943690 GTTCCCTTCTAGCCGAAATTCC 59.056 50.000 0.00 0.00 0.00 3.01
619 625 3.782656 AAAAGTTCCCTTCTAGCCGAA 57.217 42.857 0.00 0.00 0.00 4.30
622 628 4.223556 AGCTAAAAGTTCCCTTCTAGCC 57.776 45.455 4.60 0.00 44.79 3.93
745 945 5.704217 GACGTGGTTGTCTAATGATCTTC 57.296 43.478 0.00 0.00 35.95 2.87
769 969 1.192146 TGCCATCCCTATCCGTAGCC 61.192 60.000 0.00 0.00 0.00 3.93
921 1144 0.322008 GCTGGGGACAAAGACTGAGG 60.322 60.000 0.00 0.00 42.06 3.86
930 1153 0.038166 GAGTTCCATGCTGGGGACAA 59.962 55.000 8.16 0.00 42.06 3.18
1010 1234 0.953471 GATAACCACTGCCACGCACA 60.953 55.000 0.00 0.00 33.79 4.57
1024 1248 3.969981 GCTACTCTCGCGAAAGAGATAAC 59.030 47.826 26.51 12.26 45.17 1.89
1031 1255 1.586564 CCGGCTACTCTCGCGAAAG 60.587 63.158 11.33 9.68 0.00 2.62
1101 1349 0.607112 CTCAGCTCTGCTCAGGTCAA 59.393 55.000 0.00 0.00 36.40 3.18
1142 1401 1.374252 GCGACGGAGCAAGGAGAAA 60.374 57.895 0.00 0.00 37.05 2.52
1207 1466 0.616111 AACAGGAGCATCGGGAGACT 60.616 55.000 0.00 0.00 44.82 3.24
1209 1468 0.324738 AGAACAGGAGCATCGGGAGA 60.325 55.000 0.00 0.00 46.90 3.71
1224 1483 2.742372 ACCATGGCGTCGCAGAAC 60.742 61.111 20.50 1.50 39.69 3.01
1318 1577 1.336332 CGATCTAGTGATCCAAGGCGG 60.336 57.143 0.00 0.00 44.61 6.13
1320 1579 3.385577 GAACGATCTAGTGATCCAAGGC 58.614 50.000 0.00 0.00 44.61 4.35
1321 1580 3.983741 GGAACGATCTAGTGATCCAAGG 58.016 50.000 0.00 0.00 44.61 3.61
1343 1602 9.334693 GAAGCACATCCGATTAATTATTCAATC 57.665 33.333 7.84 0.00 0.00 2.67
1344 1603 9.071276 AGAAGCACATCCGATTAATTATTCAAT 57.929 29.630 7.84 0.00 0.00 2.57
1345 1604 8.450578 AGAAGCACATCCGATTAATTATTCAA 57.549 30.769 7.84 0.00 0.00 2.69
1346 1605 8.344831 CAAGAAGCACATCCGATTAATTATTCA 58.655 33.333 7.84 0.00 0.00 2.57
1347 1606 8.345565 ACAAGAAGCACATCCGATTAATTATTC 58.654 33.333 0.00 0.00 0.00 1.75
1348 1607 8.131100 CACAAGAAGCACATCCGATTAATTATT 58.869 33.333 0.00 0.00 0.00 1.40
1349 1608 7.498900 TCACAAGAAGCACATCCGATTAATTAT 59.501 33.333 0.00 0.00 0.00 1.28
1350 1609 6.821160 TCACAAGAAGCACATCCGATTAATTA 59.179 34.615 0.00 0.00 0.00 1.40
1351 1610 5.647658 TCACAAGAAGCACATCCGATTAATT 59.352 36.000 0.00 0.00 0.00 1.40
1352 1611 5.185454 TCACAAGAAGCACATCCGATTAAT 58.815 37.500 0.00 0.00 0.00 1.40
1353 1612 4.574892 TCACAAGAAGCACATCCGATTAA 58.425 39.130 0.00 0.00 0.00 1.40
1354 1613 4.200838 TCACAAGAAGCACATCCGATTA 57.799 40.909 0.00 0.00 0.00 1.75
1355 1614 3.057969 TCACAAGAAGCACATCCGATT 57.942 42.857 0.00 0.00 0.00 3.34
1356 1615 2.768253 TCACAAGAAGCACATCCGAT 57.232 45.000 0.00 0.00 0.00 4.18
1357 1616 2.768253 ATCACAAGAAGCACATCCGA 57.232 45.000 0.00 0.00 0.00 4.55
1358 1617 3.438087 AGAAATCACAAGAAGCACATCCG 59.562 43.478 0.00 0.00 0.00 4.18
1359 1618 5.159209 CAAGAAATCACAAGAAGCACATCC 58.841 41.667 0.00 0.00 0.00 3.51
1361 1620 5.533903 AGACAAGAAATCACAAGAAGCACAT 59.466 36.000 0.00 0.00 0.00 3.21
1363 1622 5.429957 AGACAAGAAATCACAAGAAGCAC 57.570 39.130 0.00 0.00 0.00 4.40
1364 1623 5.221106 CCAAGACAAGAAATCACAAGAAGCA 60.221 40.000 0.00 0.00 0.00 3.91
1368 1627 5.436175 TGACCAAGACAAGAAATCACAAGA 58.564 37.500 0.00 0.00 0.00 3.02
1369 1628 5.755813 CTGACCAAGACAAGAAATCACAAG 58.244 41.667 0.00 0.00 0.00 3.16
1370 1629 4.036734 GCTGACCAAGACAAGAAATCACAA 59.963 41.667 0.00 0.00 0.00 3.33
1372 1631 3.817647 AGCTGACCAAGACAAGAAATCAC 59.182 43.478 0.00 0.00 0.00 3.06
1378 1637 1.345741 CTCCAGCTGACCAAGACAAGA 59.654 52.381 17.39 0.00 0.00 3.02
1381 1640 1.372683 GCTCCAGCTGACCAAGACA 59.627 57.895 17.39 0.00 38.21 3.41
1382 1641 1.739562 CGCTCCAGCTGACCAAGAC 60.740 63.158 17.39 3.18 39.32 3.01
1383 1642 2.659016 CGCTCCAGCTGACCAAGA 59.341 61.111 17.39 1.92 39.32 3.02
1384 1643 2.435586 CCGCTCCAGCTGACCAAG 60.436 66.667 17.39 8.08 39.32 3.61
1389 1660 3.241530 ACCAACCGCTCCAGCTGA 61.242 61.111 17.39 0.00 39.32 4.26
1402 1673 2.615465 CCTGCATCTCCCCCACCAA 61.615 63.158 0.00 0.00 0.00 3.67
1588 1859 1.400629 GCAATGGCGAATCGATGGATG 60.401 52.381 6.91 0.00 31.83 3.51
1608 1879 2.108566 CTCTGCTCTGCATCCCCG 59.891 66.667 0.00 0.00 38.13 5.73
1626 1897 0.821517 TGTACCATACCCGTGCTCTG 59.178 55.000 0.00 0.00 0.00 3.35
1628 1899 0.822164 AGTGTACCATACCCGTGCTC 59.178 55.000 0.00 0.00 0.00 4.26
1629 1900 2.148446 TAGTGTACCATACCCGTGCT 57.852 50.000 0.00 0.00 0.00 4.40
1631 1902 5.644636 ACAAAATTAGTGTACCATACCCGTG 59.355 40.000 0.00 0.00 0.00 4.94
1632 1903 5.644636 CACAAAATTAGTGTACCATACCCGT 59.355 40.000 3.45 0.00 32.44 5.28
1633 1904 5.448089 GCACAAAATTAGTGTACCATACCCG 60.448 44.000 11.28 0.00 39.17 5.28
1635 1906 6.753107 AGCACAAAATTAGTGTACCATACC 57.247 37.500 11.28 0.00 39.17 2.73
1636 1907 7.027161 CCAAGCACAAAATTAGTGTACCATAC 58.973 38.462 11.28 0.00 39.17 2.39
1637 1908 6.349777 GCCAAGCACAAAATTAGTGTACCATA 60.350 38.462 11.28 0.00 39.17 2.74
1638 1909 5.566627 GCCAAGCACAAAATTAGTGTACCAT 60.567 40.000 11.28 0.00 39.17 3.55
1666 1937 3.119096 GCCGAACGAGCAGGAACC 61.119 66.667 0.00 0.00 0.00 3.62
1669 1940 2.125552 CATGCCGAACGAGCAGGA 60.126 61.111 13.53 0.00 44.47 3.86
1678 1949 2.042259 CCTTGAGCTGCATGCCGAA 61.042 57.895 16.68 0.00 44.23 4.30
1699 1970 1.734465 CCGCATGTTCTCCTTCTTGAC 59.266 52.381 0.00 0.00 0.00 3.18
1819 2105 2.220653 TCTTCTTTGCCTTCCCATGG 57.779 50.000 4.14 4.14 0.00 3.66
1831 2117 4.562552 CGCCTCTTCTTCCTCTTCTTCTTT 60.563 45.833 0.00 0.00 0.00 2.52
1855 2141 2.185350 CCGATCCTTCTGCGCTGT 59.815 61.111 9.73 0.00 0.00 4.40
1869 2155 3.744719 CTGAAGACGACGGGCCGA 61.745 66.667 35.78 6.17 0.00 5.54
2359 2659 1.168714 GCGGCTGGATCACTCTTTTT 58.831 50.000 0.00 0.00 0.00 1.94
2360 2660 0.678048 GGCGGCTGGATCACTCTTTT 60.678 55.000 0.00 0.00 0.00 2.27
2361 2661 1.078143 GGCGGCTGGATCACTCTTT 60.078 57.895 0.00 0.00 0.00 2.52
2362 2662 1.557269 AAGGCGGCTGGATCACTCTT 61.557 55.000 14.21 0.00 0.00 2.85
2363 2663 1.557269 AAAGGCGGCTGGATCACTCT 61.557 55.000 14.21 0.00 0.00 3.24
2364 2664 1.078143 AAAGGCGGCTGGATCACTC 60.078 57.895 14.21 0.00 0.00 3.51
2365 2665 1.078143 GAAAGGCGGCTGGATCACT 60.078 57.895 14.21 0.00 0.00 3.41
2369 2674 0.251341 AAACAGAAAGGCGGCTGGAT 60.251 50.000 14.21 1.23 36.47 3.41
2371 2676 0.039165 GAAAACAGAAAGGCGGCTGG 60.039 55.000 14.21 5.41 36.47 4.85
2380 2685 4.699735 TCACACAGCTTCAGAAAACAGAAA 59.300 37.500 0.00 0.00 0.00 2.52
2381 2686 4.260985 TCACACAGCTTCAGAAAACAGAA 58.739 39.130 0.00 0.00 0.00 3.02
2434 2745 4.503741 TTTCACATGCTCAAGTTTAGGC 57.496 40.909 0.00 0.00 0.00 3.93
2452 2763 2.007608 GTGGGCAGATCCTACGTTTTC 58.992 52.381 0.00 0.00 36.56 2.29
2491 2802 8.932791 ACGTTAGTGTGTTATTTGAATCTAAGG 58.067 33.333 0.00 0.00 0.00 2.69
2494 2805 7.809331 ACGACGTTAGTGTGTTATTTGAATCTA 59.191 33.333 0.00 0.00 0.00 1.98
2551 2862 7.168905 AGTAAAAAGACCAGAGGGAGTATTTG 58.831 38.462 0.00 0.00 38.05 2.32
2552 2863 7.331089 AGTAAAAAGACCAGAGGGAGTATTT 57.669 36.000 0.00 0.00 38.05 1.40
2553 2864 6.954352 AGTAAAAAGACCAGAGGGAGTATT 57.046 37.500 0.00 0.00 38.05 1.89
2554 2865 7.624077 ACATAGTAAAAAGACCAGAGGGAGTAT 59.376 37.037 0.00 0.00 38.05 2.12
2555 2866 6.958192 ACATAGTAAAAAGACCAGAGGGAGTA 59.042 38.462 0.00 0.00 38.05 2.59
2556 2867 5.785940 ACATAGTAAAAAGACCAGAGGGAGT 59.214 40.000 0.00 0.00 38.05 3.85
2557 2868 6.301169 ACATAGTAAAAAGACCAGAGGGAG 57.699 41.667 0.00 0.00 38.05 4.30
2558 2869 7.989947 ATACATAGTAAAAAGACCAGAGGGA 57.010 36.000 0.00 0.00 38.05 4.20
2590 2901 9.607988 TGTGAAGTTATGAAGTTTGACTTAGAA 57.392 29.630 0.00 0.00 38.80 2.10
2591 2902 9.607988 TTGTGAAGTTATGAAGTTTGACTTAGA 57.392 29.630 0.00 0.00 38.80 2.10
2594 2905 8.739972 ACTTTGTGAAGTTATGAAGTTTGACTT 58.260 29.630 0.00 0.00 43.48 3.01
2595 2906 8.281212 ACTTTGTGAAGTTATGAAGTTTGACT 57.719 30.769 0.00 0.00 43.48 3.41
2610 2921 9.912634 ATACAAATATGGTCAAACTTTGTGAAG 57.087 29.630 8.72 0.00 39.58 3.02
2611 2922 9.689976 CATACAAATATGGTCAAACTTTGTGAA 57.310 29.630 8.72 0.00 39.58 3.18
2612 2923 9.072375 TCATACAAATATGGTCAAACTTTGTGA 57.928 29.630 8.72 0.00 39.58 3.58
2613 2924 9.689976 TTCATACAAATATGGTCAAACTTTGTG 57.310 29.630 8.72 0.00 39.58 3.33
2640 2951 6.229936 AGCATGGCAGATGTTGATATTTTT 57.770 33.333 0.00 0.00 0.00 1.94
2641 2952 5.864418 AGCATGGCAGATGTTGATATTTT 57.136 34.783 0.00 0.00 0.00 1.82
2642 2953 8.640063 TTATAGCATGGCAGATGTTGATATTT 57.360 30.769 1.66 0.00 0.00 1.40
2643 2954 8.640063 TTTATAGCATGGCAGATGTTGATATT 57.360 30.769 1.66 0.00 0.00 1.28
2644 2955 8.517878 GTTTTATAGCATGGCAGATGTTGATAT 58.482 33.333 0.00 0.00 0.00 1.63
2645 2956 7.720957 AGTTTTATAGCATGGCAGATGTTGATA 59.279 33.333 0.00 0.00 0.00 2.15
2646 2957 6.548622 AGTTTTATAGCATGGCAGATGTTGAT 59.451 34.615 0.00 0.00 0.00 2.57
2647 2958 5.887598 AGTTTTATAGCATGGCAGATGTTGA 59.112 36.000 0.00 0.00 0.00 3.18
2648 2959 6.140303 AGTTTTATAGCATGGCAGATGTTG 57.860 37.500 0.00 0.00 0.00 3.33
2649 2960 6.780457 AAGTTTTATAGCATGGCAGATGTT 57.220 33.333 0.00 0.00 0.00 2.71
2650 2961 6.780457 AAAGTTTTATAGCATGGCAGATGT 57.220 33.333 0.00 0.00 0.00 3.06
2651 2962 8.408601 ACTTAAAGTTTTATAGCATGGCAGATG 58.591 33.333 0.00 0.00 0.00 2.90
2652 2963 8.525290 ACTTAAAGTTTTATAGCATGGCAGAT 57.475 30.769 0.00 0.00 0.00 2.90
2653 2964 7.609918 TGACTTAAAGTTTTATAGCATGGCAGA 59.390 33.333 0.00 0.00 0.00 4.26
2654 2965 7.698130 GTGACTTAAAGTTTTATAGCATGGCAG 59.302 37.037 0.00 0.00 0.00 4.85
2655 2966 7.535139 GTGACTTAAAGTTTTATAGCATGGCA 58.465 34.615 0.00 0.00 0.00 4.92
2656 2967 6.687105 CGTGACTTAAAGTTTTATAGCATGGC 59.313 38.462 0.00 0.00 0.00 4.40
2657 2968 7.903431 GTCGTGACTTAAAGTTTTATAGCATGG 59.097 37.037 0.00 0.00 0.00 3.66
2658 2969 8.440059 TGTCGTGACTTAAAGTTTTATAGCATG 58.560 33.333 0.00 0.00 0.00 4.06
2659 2970 8.440833 GTGTCGTGACTTAAAGTTTTATAGCAT 58.559 33.333 0.00 0.00 0.00 3.79
2660 2971 7.438757 TGTGTCGTGACTTAAAGTTTTATAGCA 59.561 33.333 0.00 0.00 0.00 3.49
2661 2972 7.790000 TGTGTCGTGACTTAAAGTTTTATAGC 58.210 34.615 0.00 0.00 0.00 2.97
2668 2979 9.647797 TCAATATATGTGTCGTGACTTAAAGTT 57.352 29.630 1.23 0.00 0.00 2.66
2669 2980 9.817809 ATCAATATATGTGTCGTGACTTAAAGT 57.182 29.630 1.23 0.00 0.00 2.66
2674 2985 9.981114 TCAATATCAATATATGTGTCGTGACTT 57.019 29.630 1.23 0.00 0.00 3.01
2738 3049 2.876550 AGGCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
2739 3050 3.202829 AGGCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
2740 3051 2.922740 AGGCTCGTAAAGTTTGACCA 57.077 45.000 0.00 0.00 0.00 4.02
2741 3052 3.059120 GTGAAGGCTCGTAAAGTTTGACC 60.059 47.826 0.00 0.00 0.00 4.02
2742 3053 3.808174 AGTGAAGGCTCGTAAAGTTTGAC 59.192 43.478 0.00 0.00 0.00 3.18
2743 3054 4.067972 AGTGAAGGCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
2744 3055 4.272504 TGAAGTGAAGGCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
2745 3056 4.448210 TGAAGTGAAGGCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
2746 3057 4.058817 CTGAAGTGAAGGCTCGTAAAGTT 58.941 43.478 0.00 0.00 0.00 2.66
2747 3058 3.069729 ACTGAAGTGAAGGCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
2748 3059 3.654414 ACTGAAGTGAAGGCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
2749 3060 3.069016 TGACTGAAGTGAAGGCTCGTAAA 59.931 43.478 0.00 0.00 0.00 2.01
2750 3061 2.626266 TGACTGAAGTGAAGGCTCGTAA 59.374 45.455 0.00 0.00 0.00 3.18
2751 3062 2.235891 TGACTGAAGTGAAGGCTCGTA 58.764 47.619 0.00 0.00 0.00 3.43
2752 3063 1.040646 TGACTGAAGTGAAGGCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
2753 3064 2.154854 TTGACTGAAGTGAAGGCTCG 57.845 50.000 0.00 0.00 0.00 5.03
2754 3065 3.879892 AGTTTTGACTGAAGTGAAGGCTC 59.120 43.478 0.00 0.00 0.00 4.70
2755 3066 3.891049 AGTTTTGACTGAAGTGAAGGCT 58.109 40.909 0.00 0.00 0.00 4.58
2756 3067 5.948992 ATAGTTTTGACTGAAGTGAAGGC 57.051 39.130 0.00 0.00 0.00 4.35
2757 3068 9.003658 ACATTATAGTTTTGACTGAAGTGAAGG 57.996 33.333 0.00 0.00 0.00 3.46
2764 3075 9.146984 CGTCCTAACATTATAGTTTTGACTGAA 57.853 33.333 0.00 0.00 32.87 3.02
2765 3076 8.308931 ACGTCCTAACATTATAGTTTTGACTGA 58.691 33.333 0.00 0.00 32.87 3.41
2766 3077 8.475331 ACGTCCTAACATTATAGTTTTGACTG 57.525 34.615 0.00 0.00 32.87 3.51
2767 3078 7.487189 CGACGTCCTAACATTATAGTTTTGACT 59.513 37.037 10.58 0.00 32.87 3.41
2768 3079 7.485913 TCGACGTCCTAACATTATAGTTTTGAC 59.514 37.037 10.58 0.00 33.07 3.18
2769 3080 7.537715 TCGACGTCCTAACATTATAGTTTTGA 58.462 34.615 10.58 0.00 33.07 2.69
2770 3081 7.745022 TCGACGTCCTAACATTATAGTTTTG 57.255 36.000 10.58 0.00 33.07 2.44
2772 3083 9.455847 GTTATCGACGTCCTAACATTATAGTTT 57.544 33.333 21.76 0.00 33.07 2.66
2773 3084 8.844244 AGTTATCGACGTCCTAACATTATAGTT 58.156 33.333 25.54 9.55 35.55 2.24
2774 3085 8.288208 CAGTTATCGACGTCCTAACATTATAGT 58.712 37.037 25.54 10.05 0.00 2.12
2775 3086 8.288208 ACAGTTATCGACGTCCTAACATTATAG 58.712 37.037 25.54 15.39 0.00 1.31
2776 3087 8.158169 ACAGTTATCGACGTCCTAACATTATA 57.842 34.615 25.54 6.49 0.00 0.98
2777 3088 7.035840 ACAGTTATCGACGTCCTAACATTAT 57.964 36.000 25.54 11.29 0.00 1.28
2778 3089 6.093909 TGACAGTTATCGACGTCCTAACATTA 59.906 38.462 25.54 14.20 33.67 1.90
2779 3090 5.106038 TGACAGTTATCGACGTCCTAACATT 60.106 40.000 25.54 16.90 33.67 2.71
2780 3091 4.397103 TGACAGTTATCGACGTCCTAACAT 59.603 41.667 25.54 17.88 33.67 2.71
2781 3092 3.752747 TGACAGTTATCGACGTCCTAACA 59.247 43.478 25.54 12.42 33.67 2.41
2782 3093 4.094212 GTGACAGTTATCGACGTCCTAAC 58.906 47.826 20.20 20.20 33.67 2.34
2783 3094 3.752747 TGTGACAGTTATCGACGTCCTAA 59.247 43.478 10.58 5.59 33.67 2.69
2784 3095 3.125829 GTGTGACAGTTATCGACGTCCTA 59.874 47.826 10.58 0.00 33.67 2.94
2785 3096 2.095364 GTGTGACAGTTATCGACGTCCT 60.095 50.000 10.58 0.00 33.67 3.85
2786 3097 2.248487 GTGTGACAGTTATCGACGTCC 58.752 52.381 10.58 0.00 33.67 4.79
2787 3098 2.924903 TGTGTGACAGTTATCGACGTC 58.075 47.619 5.18 5.18 34.54 4.34
2788 3099 3.242518 CATGTGTGACAGTTATCGACGT 58.757 45.455 0.00 0.00 0.00 4.34
2789 3100 3.242518 ACATGTGTGACAGTTATCGACG 58.757 45.455 0.00 0.00 0.00 5.12
2807 3118 3.689161 CACAATCAACCGATACACCACAT 59.311 43.478 0.00 0.00 0.00 3.21
2819 3130 3.126729 GCATGTGGCACAATCAACC 57.873 52.632 25.95 5.67 44.16 3.77
2832 3143 1.597854 CGGTGTCACACAGGCATGT 60.598 57.895 10.85 0.00 41.57 3.21
2835 3146 2.131067 TCTCGGTGTCACACAGGCA 61.131 57.895 10.85 0.00 35.86 4.75
2892 3206 3.702048 GCCTGGACGTGTGGGCTA 61.702 66.667 13.01 0.00 41.20 3.93
2959 3302 1.134491 GGTCGAACTGGGGATCGAAAT 60.134 52.381 0.00 0.00 45.49 2.17
2988 3331 1.477295 GGGTCAAGAGGTAGAAGACGG 59.523 57.143 0.00 0.00 0.00 4.79
2994 3337 1.341383 GGTACGGGGTCAAGAGGTAGA 60.341 57.143 0.00 0.00 0.00 2.59
3003 3346 1.755395 CGATGGAGGTACGGGGTCA 60.755 63.158 0.00 0.00 0.00 4.02
3010 3353 0.831307 AAGGAAGGCGATGGAGGTAC 59.169 55.000 0.00 0.00 0.00 3.34
3091 3455 1.133363 TCTTGAAAGGACGGGGTTGA 58.867 50.000 0.00 0.00 0.00 3.18
3092 3456 1.235724 GTCTTGAAAGGACGGGGTTG 58.764 55.000 0.00 0.00 0.00 3.77
3093 3457 3.719816 GTCTTGAAAGGACGGGGTT 57.280 52.632 0.00 0.00 0.00 4.11
3100 3464 3.401033 TTGCTCATCGTCTTGAAAGGA 57.599 42.857 0.00 0.00 0.00 3.36
3130 3494 2.226330 ACAGAAGGAGATCGGAGATCG 58.774 52.381 4.60 0.00 45.12 3.69
3153 3517 4.351874 TTCTGGACAGAAAAAGGACGAT 57.648 40.909 12.04 0.00 43.79 3.73
3203 3568 1.153369 CGTGGATCCAGTCGCCATT 60.153 57.895 16.81 0.00 33.66 3.16
3254 3621 1.928503 GTTGATGGGCAAATGCGAATG 59.071 47.619 0.00 0.00 43.26 2.67
3270 3637 2.495669 TGACAGATCTGGCGTATGTTGA 59.504 45.455 26.08 2.06 42.94 3.18
3306 3675 4.579869 CCAACCTAGAAGCTTAGCTCAAA 58.420 43.478 7.36 0.00 38.25 2.69
3333 3702 5.815581 TCCTTCATTACCAACTACTTGCAT 58.184 37.500 0.00 0.00 0.00 3.96
3337 3706 4.876107 CGCATCCTTCATTACCAACTACTT 59.124 41.667 0.00 0.00 0.00 2.24
3475 3847 3.118847 TGGCAAGCAACAAGAAAACATGA 60.119 39.130 0.00 0.00 0.00 3.07
3482 3854 1.999648 AGGATGGCAAGCAACAAGAA 58.000 45.000 0.00 0.00 0.00 2.52
3513 3885 4.140518 TCATTTTGAACCGATGACAACG 57.859 40.909 0.00 0.00 0.00 4.10
3524 3896 4.098349 TGGATGCCAGCTATCATTTTGAAC 59.902 41.667 1.96 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.