Multiple sequence alignment - TraesCS3A01G505500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G505500 chr3A 100.000 3155 0 0 1 3155 727351510 727354664 0.000000e+00 5827.0
1 TraesCS3A01G505500 chr3A 90.139 1511 123 19 557 2065 727374915 727373429 0.000000e+00 1941.0
2 TraesCS3A01G505500 chr3A 87.342 79 5 2 559 637 33199297 33199224 5.610000e-13 86.1
3 TraesCS3A01G505500 chr2A 93.907 2544 97 25 617 3150 605337734 605335239 0.000000e+00 3786.0
4 TraesCS3A01G505500 chr2A 87.101 814 72 20 885 1683 605316514 605315719 0.000000e+00 891.0
5 TraesCS3A01G505500 chr2A 89.899 297 29 1 2253 2548 528209675 528209971 6.390000e-102 381.0
6 TraesCS3A01G505500 chr2A 98.039 204 3 1 1 203 733817551 733817754 1.390000e-93 353.0
7 TraesCS3A01G505500 chr2A 94.667 150 8 0 205 354 194162178 194162029 1.890000e-57 233.0
8 TraesCS3A01G505500 chr2A 94.631 149 8 0 205 353 213491252 213491104 6.810000e-57 231.0
9 TraesCS3A01G505500 chr2A 100.000 70 0 0 556 625 605352067 605351998 2.550000e-26 130.0
10 TraesCS3A01G505500 chr3B 92.896 2562 112 31 613 3152 804008418 804010931 0.000000e+00 3659.0
11 TraesCS3A01G505500 chr3B 87.405 1183 127 15 883 2047 804108208 804109386 0.000000e+00 1339.0
12 TraesCS3A01G505500 chr3B 99.038 208 2 0 353 560 811698014 811697807 1.070000e-99 374.0
13 TraesCS3A01G505500 chr3B 87.676 284 26 5 1 278 244230393 244230673 3.930000e-84 322.0
14 TraesCS3A01G505500 chr3B 87.500 56 5 2 590 644 148066105 148066159 2.630000e-06 63.9
15 TraesCS3A01G505500 chr3D 88.169 710 55 11 638 1321 597246014 597246720 0.000000e+00 819.0
16 TraesCS3A01G505500 chr3D 86.667 315 39 1 2253 2564 590219346 590219660 2.330000e-91 346.0
17 TraesCS3A01G505500 chr5B 99.519 208 1 0 350 557 555149595 555149802 2.300000e-101 379.0
18 TraesCS3A01G505500 chr5B 97.248 218 6 0 344 561 656171964 656172181 1.380000e-98 370.0
19 TraesCS3A01G505500 chr7A 85.955 356 45 5 1 353 108822186 108822539 2.970000e-100 375.0
20 TraesCS3A01G505500 chr7A 85.112 356 39 5 1 354 399853935 399854278 5.010000e-93 351.0
21 TraesCS3A01G505500 chr7A 87.542 297 37 0 2253 2549 69905085 69905381 8.380000e-91 344.0
22 TraesCS3A01G505500 chr7A 88.889 153 2 5 203 354 714610704 714610842 1.160000e-39 174.0
23 TraesCS3A01G505500 chr7A 95.652 46 2 0 309 354 717840041 717840086 1.210000e-09 75.0
24 TraesCS3A01G505500 chr7A 82.222 90 8 7 273 354 273366920 273367009 1.570000e-08 71.3
25 TraesCS3A01G505500 chr7A 83.784 74 10 2 273 345 302443466 302443538 5.650000e-08 69.4
26 TraesCS3A01G505500 chr2B 97.706 218 5 0 347 564 481659927 481660144 2.970000e-100 375.0
27 TraesCS3A01G505500 chr2B 98.140 215 4 0 347 561 620221339 620221553 2.970000e-100 375.0
28 TraesCS3A01G505500 chr2B 99.038 208 2 0 353 560 81318998 81318791 1.070000e-99 374.0
29 TraesCS3A01G505500 chr2B 97.674 215 5 0 347 561 620225052 620225266 1.380000e-98 370.0
30 TraesCS3A01G505500 chr7B 99.038 208 2 0 353 560 388157380 388157173 1.070000e-99 374.0
31 TraesCS3A01G505500 chr6B 99.038 208 2 0 353 560 680301003 680300796 1.070000e-99 374.0
32 TraesCS3A01G505500 chr6B 90.385 52 5 0 592 643 269079009 269079060 5.650000e-08 69.4
33 TraesCS3A01G505500 chr7D 87.385 325 38 1 2247 2568 477837315 477836991 1.380000e-98 370.0
34 TraesCS3A01G505500 chr7D 88.356 292 33 1 2258 2549 579247866 579248156 1.800000e-92 350.0
35 TraesCS3A01G505500 chr7D 88.448 277 32 0 1 277 208414787 208415063 5.040000e-88 335.0
36 TraesCS3A01G505500 chr7D 86.275 306 40 2 1 305 554831861 554831557 6.520000e-87 331.0
37 TraesCS3A01G505500 chr7D 81.319 91 6 6 556 644 441986817 441986898 2.630000e-06 63.9
38 TraesCS3A01G505500 chr7D 94.286 35 2 0 608 642 615949353 615949319 2.000000e-03 54.7
39 TraesCS3A01G505500 chr4D 87.667 300 34 1 2250 2549 70121199 70121495 2.330000e-91 346.0
40 TraesCS3A01G505500 chr4D 84.270 89 8 3 556 644 36481294 36481376 7.250000e-12 82.4
41 TraesCS3A01G505500 chr4D 93.478 46 3 0 592 637 29663790 29663835 5.650000e-08 69.4
42 TraesCS3A01G505500 chr4A 87.417 302 36 2 2250 2549 522296235 522296536 2.330000e-91 346.0
43 TraesCS3A01G505500 chr1D 88.055 293 30 5 1 292 295284147 295284435 3.010000e-90 342.0
44 TraesCS3A01G505500 chr6D 83.889 360 49 8 1 353 83769903 83769546 5.040000e-88 335.0
45 TraesCS3A01G505500 chr6D 88.679 53 6 0 592 644 53543456 53543508 7.300000e-07 65.8
46 TraesCS3A01G505500 chr5D 85.802 324 37 9 4 321 424907429 424907109 5.040000e-88 335.0
47 TraesCS3A01G505500 chr6A 78.968 252 49 4 2869 3118 493529690 493529939 5.410000e-38 169.0
48 TraesCS3A01G505500 chr1B 86.905 84 5 3 561 644 590997200 590997277 4.330000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G505500 chr3A 727351510 727354664 3154 False 5827.0 5827 100.000 1 3155 1 chr3A.!!$F1 3154
1 TraesCS3A01G505500 chr3A 727373429 727374915 1486 True 1941.0 1941 90.139 557 2065 1 chr3A.!!$R2 1508
2 TraesCS3A01G505500 chr2A 605335239 605337734 2495 True 3786.0 3786 93.907 617 3150 1 chr2A.!!$R4 2533
3 TraesCS3A01G505500 chr2A 605315719 605316514 795 True 891.0 891 87.101 885 1683 1 chr2A.!!$R3 798
4 TraesCS3A01G505500 chr3B 804008418 804010931 2513 False 3659.0 3659 92.896 613 3152 1 chr3B.!!$F3 2539
5 TraesCS3A01G505500 chr3B 804108208 804109386 1178 False 1339.0 1339 87.405 883 2047 1 chr3B.!!$F4 1164
6 TraesCS3A01G505500 chr3D 597246014 597246720 706 False 819.0 819 88.169 638 1321 1 chr3D.!!$F2 683
7 TraesCS3A01G505500 chr2B 620221339 620225266 3927 False 372.5 375 97.907 347 561 2 chr2B.!!$F2 214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.107066 ATTGCTCGCCACATCATCCA 60.107 50.0 0.00 0.0 0.0 3.41 F
756 2881 0.180878 TGCATGCATTCCCGATCTGA 59.819 50.0 18.46 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 4195 1.302511 GGAGCCGGAGAAGTTGCAA 60.303 57.895 5.05 0.0 0.00 4.08 R
2547 5174 0.246635 AGCCGAGTGACGTTAGCATT 59.753 50.000 0.00 0.0 40.78 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.496529 ACATATATGAGGTAACATGCAACAC 57.503 36.000 19.63 0.00 41.41 3.32
26 27 7.282585 ACATATATGAGGTAACATGCAACACT 58.717 34.615 19.63 0.00 41.41 3.55
27 28 7.775093 ACATATATGAGGTAACATGCAACACTT 59.225 33.333 19.63 0.00 41.41 3.16
28 29 6.683974 ATATGAGGTAACATGCAACACTTC 57.316 37.500 0.00 0.00 41.41 3.01
29 30 3.814625 TGAGGTAACATGCAACACTTCA 58.185 40.909 0.00 0.00 41.41 3.02
30 31 4.397420 TGAGGTAACATGCAACACTTCAT 58.603 39.130 0.00 0.00 41.41 2.57
31 32 4.826733 TGAGGTAACATGCAACACTTCATT 59.173 37.500 0.00 0.00 41.41 2.57
32 33 5.301551 TGAGGTAACATGCAACACTTCATTT 59.698 36.000 0.00 0.00 41.41 2.32
33 34 6.488344 TGAGGTAACATGCAACACTTCATTTA 59.512 34.615 0.00 0.00 41.41 1.40
34 35 7.176515 TGAGGTAACATGCAACACTTCATTTAT 59.823 33.333 0.00 0.00 41.41 1.40
35 36 7.895759 AGGTAACATGCAACACTTCATTTATT 58.104 30.769 0.00 0.00 41.41 1.40
36 37 9.019656 AGGTAACATGCAACACTTCATTTATTA 57.980 29.630 0.00 0.00 41.41 0.98
37 38 9.632807 GGTAACATGCAACACTTCATTTATTAA 57.367 29.630 0.00 0.00 0.00 1.40
39 40 7.816945 ACATGCAACACTTCATTTATTAAGC 57.183 32.000 0.00 0.00 0.00 3.09
40 41 6.813152 ACATGCAACACTTCATTTATTAAGCC 59.187 34.615 0.00 0.00 0.00 4.35
41 42 6.338214 TGCAACACTTCATTTATTAAGCCA 57.662 33.333 0.00 0.00 0.00 4.75
42 43 6.934056 TGCAACACTTCATTTATTAAGCCAT 58.066 32.000 0.00 0.00 0.00 4.40
43 44 8.060931 TGCAACACTTCATTTATTAAGCCATA 57.939 30.769 0.00 0.00 0.00 2.74
44 45 8.190122 TGCAACACTTCATTTATTAAGCCATAG 58.810 33.333 0.00 0.00 0.00 2.23
45 46 8.405531 GCAACACTTCATTTATTAAGCCATAGA 58.594 33.333 0.00 0.00 0.00 1.98
46 47 9.722056 CAACACTTCATTTATTAAGCCATAGAC 57.278 33.333 0.00 0.00 0.00 2.59
47 48 9.686683 AACACTTCATTTATTAAGCCATAGACT 57.313 29.630 0.00 0.00 0.00 3.24
48 49 9.331282 ACACTTCATTTATTAAGCCATAGACTC 57.669 33.333 0.00 0.00 0.00 3.36
49 50 9.330063 CACTTCATTTATTAAGCCATAGACTCA 57.670 33.333 0.00 0.00 0.00 3.41
55 56 9.971922 ATTTATTAAGCCATAGACTCATTTTGC 57.028 29.630 0.00 0.00 0.00 3.68
56 57 8.518430 TTATTAAGCCATAGACTCATTTTGCA 57.482 30.769 0.00 0.00 0.00 4.08
57 58 7.592885 ATTAAGCCATAGACTCATTTTGCAT 57.407 32.000 0.00 0.00 0.00 3.96
58 59 5.927281 AAGCCATAGACTCATTTTGCATT 57.073 34.783 0.00 0.00 0.00 3.56
59 60 5.258456 AGCCATAGACTCATTTTGCATTG 57.742 39.130 0.00 0.00 0.00 2.82
60 61 4.951715 AGCCATAGACTCATTTTGCATTGA 59.048 37.500 0.00 0.00 0.00 2.57
61 62 5.597182 AGCCATAGACTCATTTTGCATTGAT 59.403 36.000 0.00 0.00 0.00 2.57
62 63 6.774170 AGCCATAGACTCATTTTGCATTGATA 59.226 34.615 0.00 0.00 0.00 2.15
63 64 7.450634 AGCCATAGACTCATTTTGCATTGATAT 59.549 33.333 0.00 0.00 0.00 1.63
64 65 7.541091 GCCATAGACTCATTTTGCATTGATATG 59.459 37.037 0.00 0.00 34.76 1.78
65 66 8.573885 CCATAGACTCATTTTGCATTGATATGT 58.426 33.333 0.00 0.00 34.12 2.29
66 67 9.394477 CATAGACTCATTTTGCATTGATATGTG 57.606 33.333 0.00 0.00 34.12 3.21
67 68 7.400599 AGACTCATTTTGCATTGATATGTGT 57.599 32.000 0.00 0.00 34.12 3.72
68 69 7.255569 AGACTCATTTTGCATTGATATGTGTG 58.744 34.615 0.00 0.00 34.12 3.82
69 70 7.121611 AGACTCATTTTGCATTGATATGTGTGA 59.878 33.333 0.00 0.00 34.12 3.58
70 71 7.778083 ACTCATTTTGCATTGATATGTGTGAT 58.222 30.769 0.00 0.00 34.12 3.06
71 72 7.704899 ACTCATTTTGCATTGATATGTGTGATG 59.295 33.333 0.00 0.00 34.12 3.07
72 73 7.548967 TCATTTTGCATTGATATGTGTGATGT 58.451 30.769 0.00 0.00 34.12 3.06
73 74 8.035984 TCATTTTGCATTGATATGTGTGATGTT 58.964 29.630 0.00 0.00 34.12 2.71
74 75 9.303537 CATTTTGCATTGATATGTGTGATGTTA 57.696 29.630 0.00 0.00 34.12 2.41
75 76 8.686397 TTTTGCATTGATATGTGTGATGTTAC 57.314 30.769 0.00 0.00 34.12 2.50
76 77 7.628769 TTGCATTGATATGTGTGATGTTACT 57.371 32.000 0.00 0.00 34.12 2.24
77 78 7.250445 TGCATTGATATGTGTGATGTTACTC 57.750 36.000 0.00 0.00 34.12 2.59
78 79 6.822676 TGCATTGATATGTGTGATGTTACTCA 59.177 34.615 0.00 0.00 34.12 3.41
79 80 7.499895 TGCATTGATATGTGTGATGTTACTCAT 59.500 33.333 0.00 0.00 38.11 2.90
80 81 8.992073 GCATTGATATGTGTGATGTTACTCATA 58.008 33.333 0.00 0.00 39.73 2.15
88 89 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
89 90 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
111 112 7.911362 GTAACTAGCTATGTTACTACTGTGC 57.089 40.000 24.17 8.39 43.56 4.57
112 113 6.777213 AACTAGCTATGTTACTACTGTGCT 57.223 37.500 0.00 0.00 0.00 4.40
113 114 6.380095 ACTAGCTATGTTACTACTGTGCTC 57.620 41.667 0.00 0.00 0.00 4.26
114 115 6.123651 ACTAGCTATGTTACTACTGTGCTCT 58.876 40.000 0.00 0.00 0.00 4.09
115 116 5.508200 AGCTATGTTACTACTGTGCTCTC 57.492 43.478 0.00 0.00 0.00 3.20
116 117 5.197451 AGCTATGTTACTACTGTGCTCTCT 58.803 41.667 0.00 0.00 0.00 3.10
117 118 5.654650 AGCTATGTTACTACTGTGCTCTCTT 59.345 40.000 0.00 0.00 0.00 2.85
118 119 6.153680 AGCTATGTTACTACTGTGCTCTCTTT 59.846 38.462 0.00 0.00 0.00 2.52
119 120 6.474102 GCTATGTTACTACTGTGCTCTCTTTC 59.526 42.308 0.00 0.00 0.00 2.62
120 121 6.597832 ATGTTACTACTGTGCTCTCTTTCT 57.402 37.500 0.00 0.00 0.00 2.52
121 122 6.406692 TGTTACTACTGTGCTCTCTTTCTT 57.593 37.500 0.00 0.00 0.00 2.52
122 123 6.448006 TGTTACTACTGTGCTCTCTTTCTTC 58.552 40.000 0.00 0.00 0.00 2.87
123 124 6.040504 TGTTACTACTGTGCTCTCTTTCTTCA 59.959 38.462 0.00 0.00 0.00 3.02
124 125 5.736951 ACTACTGTGCTCTCTTTCTTCAT 57.263 39.130 0.00 0.00 0.00 2.57
125 126 6.107901 ACTACTGTGCTCTCTTTCTTCATT 57.892 37.500 0.00 0.00 0.00 2.57
126 127 6.529220 ACTACTGTGCTCTCTTTCTTCATTT 58.471 36.000 0.00 0.00 0.00 2.32
127 128 7.671302 ACTACTGTGCTCTCTTTCTTCATTTA 58.329 34.615 0.00 0.00 0.00 1.40
128 129 8.317679 ACTACTGTGCTCTCTTTCTTCATTTAT 58.682 33.333 0.00 0.00 0.00 1.40
129 130 7.992754 ACTGTGCTCTCTTTCTTCATTTATT 57.007 32.000 0.00 0.00 0.00 1.40
130 131 7.814642 ACTGTGCTCTCTTTCTTCATTTATTG 58.185 34.615 0.00 0.00 0.00 1.90
131 132 6.615088 TGTGCTCTCTTTCTTCATTTATTGC 58.385 36.000 0.00 0.00 0.00 3.56
132 133 6.432162 TGTGCTCTCTTTCTTCATTTATTGCT 59.568 34.615 0.00 0.00 0.00 3.91
133 134 6.966066 GTGCTCTCTTTCTTCATTTATTGCTC 59.034 38.462 0.00 0.00 0.00 4.26
134 135 6.183360 TGCTCTCTTTCTTCATTTATTGCTCG 60.183 38.462 0.00 0.00 0.00 5.03
135 136 6.111768 TCTCTTTCTTCATTTATTGCTCGC 57.888 37.500 0.00 0.00 0.00 5.03
136 137 5.065218 TCTCTTTCTTCATTTATTGCTCGCC 59.935 40.000 0.00 0.00 0.00 5.54
137 138 4.699735 TCTTTCTTCATTTATTGCTCGCCA 59.300 37.500 0.00 0.00 0.00 5.69
138 139 4.355543 TTCTTCATTTATTGCTCGCCAC 57.644 40.909 0.00 0.00 0.00 5.01
139 140 3.342719 TCTTCATTTATTGCTCGCCACA 58.657 40.909 0.00 0.00 0.00 4.17
140 141 3.947196 TCTTCATTTATTGCTCGCCACAT 59.053 39.130 0.00 0.00 0.00 3.21
141 142 3.969117 TCATTTATTGCTCGCCACATC 57.031 42.857 0.00 0.00 0.00 3.06
142 143 3.277715 TCATTTATTGCTCGCCACATCA 58.722 40.909 0.00 0.00 0.00 3.07
143 144 3.884693 TCATTTATTGCTCGCCACATCAT 59.115 39.130 0.00 0.00 0.00 2.45
144 145 3.969117 TTTATTGCTCGCCACATCATC 57.031 42.857 0.00 0.00 0.00 2.92
145 146 1.882912 TATTGCTCGCCACATCATCC 58.117 50.000 0.00 0.00 0.00 3.51
146 147 0.107066 ATTGCTCGCCACATCATCCA 60.107 50.000 0.00 0.00 0.00 3.41
147 148 0.107066 TTGCTCGCCACATCATCCAT 60.107 50.000 0.00 0.00 0.00 3.41
148 149 0.107066 TGCTCGCCACATCATCCATT 60.107 50.000 0.00 0.00 0.00 3.16
149 150 0.590195 GCTCGCCACATCATCCATTC 59.410 55.000 0.00 0.00 0.00 2.67
150 151 1.813092 GCTCGCCACATCATCCATTCT 60.813 52.381 0.00 0.00 0.00 2.40
151 152 2.548707 GCTCGCCACATCATCCATTCTA 60.549 50.000 0.00 0.00 0.00 2.10
152 153 3.867600 GCTCGCCACATCATCCATTCTAT 60.868 47.826 0.00 0.00 0.00 1.98
153 154 3.930336 TCGCCACATCATCCATTCTATC 58.070 45.455 0.00 0.00 0.00 2.08
154 155 3.580022 TCGCCACATCATCCATTCTATCT 59.420 43.478 0.00 0.00 0.00 1.98
155 156 4.772100 TCGCCACATCATCCATTCTATCTA 59.228 41.667 0.00 0.00 0.00 1.98
156 157 5.245977 TCGCCACATCATCCATTCTATCTAA 59.754 40.000 0.00 0.00 0.00 2.10
157 158 5.934043 CGCCACATCATCCATTCTATCTAAA 59.066 40.000 0.00 0.00 0.00 1.85
158 159 6.596888 CGCCACATCATCCATTCTATCTAAAT 59.403 38.462 0.00 0.00 0.00 1.40
159 160 7.765819 CGCCACATCATCCATTCTATCTAAATA 59.234 37.037 0.00 0.00 0.00 1.40
160 161 9.624373 GCCACATCATCCATTCTATCTAAATAT 57.376 33.333 0.00 0.00 0.00 1.28
163 164 9.322773 ACATCATCCATTCTATCTAAATATGCG 57.677 33.333 0.00 0.00 0.00 4.73
164 165 9.322773 CATCATCCATTCTATCTAAATATGCGT 57.677 33.333 0.00 0.00 0.00 5.24
165 166 8.707938 TCATCCATTCTATCTAAATATGCGTG 57.292 34.615 0.00 0.00 0.00 5.34
166 167 8.531146 TCATCCATTCTATCTAAATATGCGTGA 58.469 33.333 0.00 0.00 0.00 4.35
167 168 9.322773 CATCCATTCTATCTAAATATGCGTGAT 57.677 33.333 0.00 0.00 0.00 3.06
168 169 8.707938 TCCATTCTATCTAAATATGCGTGATG 57.292 34.615 0.00 0.00 0.00 3.07
169 170 8.314021 TCCATTCTATCTAAATATGCGTGATGT 58.686 33.333 0.00 0.00 0.00 3.06
170 171 8.939929 CCATTCTATCTAAATATGCGTGATGTT 58.060 33.333 0.00 0.00 0.00 2.71
176 177 8.758633 ATCTAAATATGCGTGATGTTACTACC 57.241 34.615 0.00 0.00 0.00 3.18
177 178 7.948357 TCTAAATATGCGTGATGTTACTACCT 58.052 34.615 0.00 0.00 0.00 3.08
178 179 9.070179 TCTAAATATGCGTGATGTTACTACCTA 57.930 33.333 0.00 0.00 0.00 3.08
179 180 7.941795 AAATATGCGTGATGTTACTACCTAC 57.058 36.000 0.00 0.00 0.00 3.18
180 181 3.409851 TGCGTGATGTTACTACCTACG 57.590 47.619 0.00 0.00 0.00 3.51
181 182 2.749076 TGCGTGATGTTACTACCTACGT 59.251 45.455 0.00 0.00 33.13 3.57
182 183 3.191162 TGCGTGATGTTACTACCTACGTT 59.809 43.478 0.00 0.00 33.13 3.99
183 184 4.394610 TGCGTGATGTTACTACCTACGTTA 59.605 41.667 0.00 0.00 33.13 3.18
184 185 4.730521 GCGTGATGTTACTACCTACGTTAC 59.269 45.833 0.00 0.00 33.13 2.50
185 186 5.447818 GCGTGATGTTACTACCTACGTTACT 60.448 44.000 0.00 0.00 33.13 2.24
186 187 6.188175 CGTGATGTTACTACCTACGTTACTC 58.812 44.000 0.00 0.00 0.00 2.59
187 188 6.490534 GTGATGTTACTACCTACGTTACTCC 58.509 44.000 0.00 0.00 0.00 3.85
188 189 5.590259 TGATGTTACTACCTACGTTACTCCC 59.410 44.000 0.00 0.00 0.00 4.30
189 190 4.917385 TGTTACTACCTACGTTACTCCCA 58.083 43.478 0.00 0.00 0.00 4.37
190 191 5.509498 TGTTACTACCTACGTTACTCCCAT 58.491 41.667 0.00 0.00 0.00 4.00
191 192 5.951747 TGTTACTACCTACGTTACTCCCATT 59.048 40.000 0.00 0.00 0.00 3.16
192 193 4.996788 ACTACCTACGTTACTCCCATTG 57.003 45.455 0.00 0.00 0.00 2.82
193 194 4.347607 ACTACCTACGTTACTCCCATTGT 58.652 43.478 0.00 0.00 0.00 2.71
194 195 3.604875 ACCTACGTTACTCCCATTGTG 57.395 47.619 0.00 0.00 0.00 3.33
195 196 2.235402 ACCTACGTTACTCCCATTGTGG 59.765 50.000 0.00 0.00 37.25 4.17
207 208 2.919228 CCATTGTGGGTAGTCTAAGGC 58.081 52.381 0.00 0.00 32.67 4.35
208 209 2.505819 CCATTGTGGGTAGTCTAAGGCT 59.494 50.000 0.00 0.00 32.67 4.58
209 210 3.535561 CATTGTGGGTAGTCTAAGGCTG 58.464 50.000 0.00 0.00 0.00 4.85
210 211 1.568504 TGTGGGTAGTCTAAGGCTGG 58.431 55.000 0.00 0.00 0.00 4.85
211 212 1.203262 TGTGGGTAGTCTAAGGCTGGT 60.203 52.381 0.00 0.00 0.00 4.00
212 213 1.481363 GTGGGTAGTCTAAGGCTGGTC 59.519 57.143 0.00 0.00 0.00 4.02
213 214 1.078159 TGGGTAGTCTAAGGCTGGTCA 59.922 52.381 0.00 0.00 0.00 4.02
214 215 2.292918 TGGGTAGTCTAAGGCTGGTCAT 60.293 50.000 0.00 0.00 0.00 3.06
215 216 3.052414 TGGGTAGTCTAAGGCTGGTCATA 60.052 47.826 0.00 0.00 0.00 2.15
216 217 3.574826 GGGTAGTCTAAGGCTGGTCATAG 59.425 52.174 0.00 0.00 0.00 2.23
217 218 4.216708 GGTAGTCTAAGGCTGGTCATAGT 58.783 47.826 0.00 0.00 0.00 2.12
218 219 4.038162 GGTAGTCTAAGGCTGGTCATAGTG 59.962 50.000 0.00 0.00 0.00 2.74
219 220 3.034635 AGTCTAAGGCTGGTCATAGTGG 58.965 50.000 0.00 0.00 0.00 4.00
220 221 2.103263 GTCTAAGGCTGGTCATAGTGGG 59.897 54.545 0.00 0.00 0.00 4.61
221 222 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
222 223 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
223 224 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
224 225 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
225 226 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
226 227 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
227 228 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
228 229 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
229 230 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
230 231 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
231 232 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
232 233 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
233 234 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
234 235 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
235 236 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
236 237 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
237 238 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
238 239 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
239 240 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
240 241 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
241 242 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
242 243 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
243 244 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
244 245 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
245 246 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
281 282 9.809395 AGTCTATGTTACTACCTCTATAATGCA 57.191 33.333 0.00 0.00 0.00 3.96
312 313 9.766754 ATCATACATCAGTATCATAAGAGGTCT 57.233 33.333 0.00 0.00 38.88 3.85
313 314 9.593565 TCATACATCAGTATCATAAGAGGTCTT 57.406 33.333 0.00 0.00 38.88 3.01
326 327 9.288576 TCATAAGAGGTCTTATTTATTGCCATG 57.711 33.333 9.17 0.00 44.33 3.66
327 328 6.396829 AAGAGGTCTTATTTATTGCCATGC 57.603 37.500 0.00 0.00 33.79 4.06
328 329 5.448654 AGAGGTCTTATTTATTGCCATGCA 58.551 37.500 0.00 0.00 36.47 3.96
329 330 6.073314 AGAGGTCTTATTTATTGCCATGCAT 58.927 36.000 0.00 0.00 38.76 3.96
330 331 6.015688 AGAGGTCTTATTTATTGCCATGCATG 60.016 38.462 20.19 20.19 38.76 4.06
331 332 5.834742 AGGTCTTATTTATTGCCATGCATGA 59.165 36.000 28.31 8.76 38.76 3.07
332 333 5.922544 GGTCTTATTTATTGCCATGCATGAC 59.077 40.000 28.31 17.77 38.76 3.06
333 334 6.461370 GGTCTTATTTATTGCCATGCATGACA 60.461 38.462 28.31 20.53 38.76 3.58
334 335 6.418819 GTCTTATTTATTGCCATGCATGACAC 59.581 38.462 28.31 16.49 38.76 3.67
335 336 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
336 337 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
337 338 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
338 339 5.441709 TTATTGCCATGCATGACACATAG 57.558 39.130 28.31 10.23 38.76 2.23
339 340 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
340 341 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
341 342 3.469739 TGCCATGCATGACACATAGTAG 58.530 45.455 28.31 8.01 31.71 2.57
342 343 2.225019 GCCATGCATGACACATAGTAGC 59.775 50.000 28.31 14.15 0.00 3.58
343 344 3.469739 CCATGCATGACACATAGTAGCA 58.530 45.455 28.31 0.00 37.13 3.49
344 345 4.070009 CCATGCATGACACATAGTAGCAT 58.930 43.478 28.31 0.00 41.24 3.79
345 346 4.153655 CCATGCATGACACATAGTAGCATC 59.846 45.833 28.31 0.00 39.67 3.91
346 347 4.405116 TGCATGACACATAGTAGCATCA 57.595 40.909 0.00 0.00 30.65 3.07
347 348 4.122046 TGCATGACACATAGTAGCATCAC 58.878 43.478 0.00 0.00 30.65 3.06
348 349 4.122046 GCATGACACATAGTAGCATCACA 58.878 43.478 0.00 0.00 0.00 3.58
349 350 4.753610 GCATGACACATAGTAGCATCACAT 59.246 41.667 0.00 0.00 0.00 3.21
350 351 5.237996 GCATGACACATAGTAGCATCACATT 59.762 40.000 0.00 0.00 0.00 2.71
351 352 6.238566 GCATGACACATAGTAGCATCACATTT 60.239 38.462 0.00 0.00 0.00 2.32
441 442 3.342377 TTGGAAACCGCTATGTGATGA 57.658 42.857 0.00 0.00 0.00 2.92
586 2688 6.850752 ACTTCCCTTTTTCTGAAAACTCAA 57.149 33.333 14.70 5.59 31.72 3.02
682 2785 2.647299 TGCACCTTTCCCCAAGAAGATA 59.353 45.455 0.00 0.00 35.40 1.98
753 2878 3.786809 CATGCATGCATTCCCGATC 57.213 52.632 30.32 0.00 33.90 3.69
754 2879 1.244816 CATGCATGCATTCCCGATCT 58.755 50.000 30.32 4.44 33.90 2.75
755 2880 1.068541 CATGCATGCATTCCCGATCTG 60.069 52.381 30.32 13.81 33.90 2.90
756 2881 0.180878 TGCATGCATTCCCGATCTGA 59.819 50.000 18.46 0.00 0.00 3.27
757 2882 0.590195 GCATGCATTCCCGATCTGAC 59.410 55.000 14.21 0.00 0.00 3.51
758 2883 1.813092 GCATGCATTCCCGATCTGACT 60.813 52.381 14.21 0.00 0.00 3.41
759 2884 2.569059 CATGCATTCCCGATCTGACTT 58.431 47.619 0.00 0.00 0.00 3.01
760 2885 2.787473 TGCATTCCCGATCTGACTTT 57.213 45.000 0.00 0.00 0.00 2.66
761 2886 2.632377 TGCATTCCCGATCTGACTTTC 58.368 47.619 0.00 0.00 0.00 2.62
771 2896 4.337836 CCGATCTGACTTTCTCTCATCTCA 59.662 45.833 0.00 0.00 0.00 3.27
774 2899 3.766591 TCTGACTTTCTCTCATCTCACCC 59.233 47.826 0.00 0.00 0.00 4.61
829 2954 2.203728 ACACCTCACGGGCCAGTA 60.204 61.111 8.66 0.00 39.10 2.74
1263 3868 7.312657 TGTTTGCAGATTGATTAGAGTCATC 57.687 36.000 0.00 0.00 0.00 2.92
1264 3869 6.317140 TGTTTGCAGATTGATTAGAGTCATCC 59.683 38.462 0.00 0.00 0.00 3.51
1636 4258 0.608130 CATCTCCACGGAACACTCCA 59.392 55.000 0.00 0.00 42.58 3.86
1642 4264 3.636231 CGGAACACTCCAGCCCCA 61.636 66.667 0.00 0.00 42.58 4.96
2062 4684 3.850774 TCCTCCTCCTTCTGACACTACTA 59.149 47.826 0.00 0.00 0.00 1.82
2209 4831 4.614535 GCAACTAGCTATATTGCCATGTGC 60.615 45.833 23.19 7.45 42.32 4.57
2294 4916 6.851330 GTCAACTGAAATTTAACCAAGTCTCG 59.149 38.462 0.00 0.00 0.00 4.04
2357 4979 0.322098 CCTACCGGTTGCAACATCCA 60.322 55.000 29.55 11.71 0.00 3.41
2376 4998 6.663093 ACATCCATCTTGCTGGTTGTAAAATA 59.337 34.615 4.97 0.00 43.92 1.40
2434 5056 5.121142 CGGTTACAACATCCTTTATTGACGT 59.879 40.000 0.00 0.00 0.00 4.34
2435 5057 6.540205 GGTTACAACATCCTTTATTGACGTC 58.460 40.000 9.11 9.11 0.00 4.34
2462 5084 3.998341 GCATTTCAGTTAGAACGGTGGTA 59.002 43.478 0.00 0.00 35.56 3.25
2573 5202 1.174783 ACGTCACTCGGCTGTTCTAT 58.825 50.000 0.00 0.00 44.69 1.98
2606 5236 9.191995 CCTTTTGTTAATCTGAAATACGCTTTT 57.808 29.630 0.00 0.00 0.00 2.27
2627 5257 3.439857 TGTGCTCCCTTTTCTATTGCT 57.560 42.857 0.00 0.00 0.00 3.91
2643 5273 2.111043 CTTCGTGCACACCCTGGT 59.889 61.111 18.64 0.00 0.00 4.00
2733 5363 6.599244 TCACTAATTATTGGCACTTGAGGAAG 59.401 38.462 3.27 0.00 35.07 3.46
2758 5388 9.205513 AGATATCCTTTAAAAAGTACCGTCCTA 57.794 33.333 0.00 0.00 34.20 2.94
2772 5402 4.024670 ACCGTCCTAGAAAATGCTACTCT 58.975 43.478 0.00 0.00 0.00 3.24
2935 5565 2.347490 GAACTCCAGCCGGCAAGA 59.653 61.111 31.54 23.07 0.00 3.02
2958 5588 4.113354 CAAAGAGGCGAGATACAAGGTAC 58.887 47.826 0.00 0.00 0.00 3.34
2985 5615 2.047655 GTCACGACCAATGCCCGA 60.048 61.111 0.00 0.00 0.00 5.14
3112 5742 1.567357 GGAGAAGCCTTGGAGAGAGT 58.433 55.000 0.00 0.00 0.00 3.24
3143 5773 2.030371 TCGTACATTGTGCCCCGTATA 58.970 47.619 0.00 0.00 0.00 1.47
3152 5782 1.153309 GCCCCGTATACCACACCAC 60.153 63.158 0.00 0.00 0.00 4.16
3153 5783 1.142314 CCCCGTATACCACACCACG 59.858 63.158 0.00 0.00 0.00 4.94
3154 5784 1.321805 CCCCGTATACCACACCACGA 61.322 60.000 0.00 0.00 36.53 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.282585 AGTGTTGCATGTTACCTCATATATGT 58.717 34.615 12.42 0.00 0.00 2.29
5 6 6.179756 TGAAGTGTTGCATGTTACCTCATAT 58.820 36.000 0.00 0.00 0.00 1.78
6 7 5.555966 TGAAGTGTTGCATGTTACCTCATA 58.444 37.500 0.00 0.00 0.00 2.15
7 8 4.397420 TGAAGTGTTGCATGTTACCTCAT 58.603 39.130 0.00 0.00 0.00 2.90
8 9 3.814625 TGAAGTGTTGCATGTTACCTCA 58.185 40.909 0.00 0.00 0.00 3.86
9 10 5.376854 AATGAAGTGTTGCATGTTACCTC 57.623 39.130 0.00 0.00 0.00 3.85
10 11 5.789643 AAATGAAGTGTTGCATGTTACCT 57.210 34.783 0.00 0.00 0.00 3.08
11 12 9.632807 TTAATAAATGAAGTGTTGCATGTTACC 57.367 29.630 0.00 0.00 0.00 2.85
13 14 9.352784 GCTTAATAAATGAAGTGTTGCATGTTA 57.647 29.630 0.00 0.00 0.00 2.41
14 15 7.331687 GGCTTAATAAATGAAGTGTTGCATGTT 59.668 33.333 0.00 0.00 0.00 2.71
15 16 6.813152 GGCTTAATAAATGAAGTGTTGCATGT 59.187 34.615 0.00 0.00 0.00 3.21
16 17 6.812656 TGGCTTAATAAATGAAGTGTTGCATG 59.187 34.615 0.00 0.00 0.00 4.06
17 18 6.934056 TGGCTTAATAAATGAAGTGTTGCAT 58.066 32.000 0.00 0.00 0.00 3.96
18 19 6.338214 TGGCTTAATAAATGAAGTGTTGCA 57.662 33.333 0.00 0.00 0.00 4.08
19 20 8.405531 TCTATGGCTTAATAAATGAAGTGTTGC 58.594 33.333 0.00 0.00 0.00 4.17
20 21 9.722056 GTCTATGGCTTAATAAATGAAGTGTTG 57.278 33.333 0.00 0.00 0.00 3.33
21 22 9.686683 AGTCTATGGCTTAATAAATGAAGTGTT 57.313 29.630 0.00 0.00 0.00 3.32
22 23 9.331282 GAGTCTATGGCTTAATAAATGAAGTGT 57.669 33.333 0.00 0.00 0.00 3.55
23 24 9.330063 TGAGTCTATGGCTTAATAAATGAAGTG 57.670 33.333 0.00 0.00 0.00 3.16
29 30 9.971922 GCAAAATGAGTCTATGGCTTAATAAAT 57.028 29.630 0.00 0.00 0.00 1.40
30 31 8.965819 TGCAAAATGAGTCTATGGCTTAATAAA 58.034 29.630 0.00 0.00 0.00 1.40
31 32 8.518430 TGCAAAATGAGTCTATGGCTTAATAA 57.482 30.769 0.00 0.00 0.00 1.40
32 33 8.696043 ATGCAAAATGAGTCTATGGCTTAATA 57.304 30.769 0.00 0.00 0.00 0.98
33 34 7.592885 ATGCAAAATGAGTCTATGGCTTAAT 57.407 32.000 0.00 0.00 0.00 1.40
34 35 7.122501 TCAATGCAAAATGAGTCTATGGCTTAA 59.877 33.333 0.00 0.00 0.00 1.85
35 36 6.602803 TCAATGCAAAATGAGTCTATGGCTTA 59.397 34.615 0.00 0.00 0.00 3.09
36 37 5.419788 TCAATGCAAAATGAGTCTATGGCTT 59.580 36.000 0.00 0.00 0.00 4.35
37 38 4.951715 TCAATGCAAAATGAGTCTATGGCT 59.048 37.500 0.00 0.00 0.00 4.75
38 39 5.252969 TCAATGCAAAATGAGTCTATGGC 57.747 39.130 0.00 0.00 0.00 4.40
39 40 8.573885 ACATATCAATGCAAAATGAGTCTATGG 58.426 33.333 16.05 6.31 36.50 2.74
40 41 9.394477 CACATATCAATGCAAAATGAGTCTATG 57.606 33.333 12.95 12.95 36.50 2.23
41 42 9.128404 ACACATATCAATGCAAAATGAGTCTAT 57.872 29.630 0.00 0.00 36.50 1.98
42 43 8.400186 CACACATATCAATGCAAAATGAGTCTA 58.600 33.333 0.00 0.00 36.50 2.59
43 44 7.121611 TCACACATATCAATGCAAAATGAGTCT 59.878 33.333 0.00 0.00 36.50 3.24
44 45 7.252708 TCACACATATCAATGCAAAATGAGTC 58.747 34.615 0.00 0.00 36.50 3.36
45 46 7.160547 TCACACATATCAATGCAAAATGAGT 57.839 32.000 0.00 0.00 36.50 3.41
46 47 7.704899 ACATCACACATATCAATGCAAAATGAG 59.295 33.333 0.00 0.00 36.50 2.90
47 48 7.548967 ACATCACACATATCAATGCAAAATGA 58.451 30.769 0.00 0.00 36.50 2.57
48 49 7.764695 ACATCACACATATCAATGCAAAATG 57.235 32.000 0.00 0.00 36.50 2.32
49 50 9.304731 GTAACATCACACATATCAATGCAAAAT 57.695 29.630 0.00 0.00 36.50 1.82
50 51 8.522003 AGTAACATCACACATATCAATGCAAAA 58.478 29.630 0.00 0.00 36.50 2.44
51 52 8.054152 AGTAACATCACACATATCAATGCAAA 57.946 30.769 0.00 0.00 36.50 3.68
52 53 7.336427 TGAGTAACATCACACATATCAATGCAA 59.664 33.333 0.00 0.00 36.50 4.08
53 54 6.822676 TGAGTAACATCACACATATCAATGCA 59.177 34.615 0.00 0.00 36.50 3.96
54 55 7.250445 TGAGTAACATCACACATATCAATGC 57.750 36.000 0.00 0.00 36.50 3.56
62 63 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
63 64 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72
88 89 7.774157 AGAGCACAGTAGTAACATAGCTAGTTA 59.226 37.037 0.00 5.74 31.10 2.24
89 90 6.603997 AGAGCACAGTAGTAACATAGCTAGTT 59.396 38.462 0.00 6.69 31.10 2.24
90 91 6.123651 AGAGCACAGTAGTAACATAGCTAGT 58.876 40.000 0.00 0.00 31.10 2.57
91 92 6.485313 AGAGAGCACAGTAGTAACATAGCTAG 59.515 42.308 0.00 0.00 31.10 3.42
92 93 6.358178 AGAGAGCACAGTAGTAACATAGCTA 58.642 40.000 0.00 0.00 31.10 3.32
93 94 5.197451 AGAGAGCACAGTAGTAACATAGCT 58.803 41.667 0.00 0.00 32.82 3.32
94 95 5.508200 AGAGAGCACAGTAGTAACATAGC 57.492 43.478 0.00 0.00 0.00 2.97
95 96 7.767261 AGAAAGAGAGCACAGTAGTAACATAG 58.233 38.462 0.00 0.00 0.00 2.23
96 97 7.704578 AGAAAGAGAGCACAGTAGTAACATA 57.295 36.000 0.00 0.00 0.00 2.29
97 98 6.597832 AGAAAGAGAGCACAGTAGTAACAT 57.402 37.500 0.00 0.00 0.00 2.71
98 99 6.040504 TGAAGAAAGAGAGCACAGTAGTAACA 59.959 38.462 0.00 0.00 0.00 2.41
99 100 6.448006 TGAAGAAAGAGAGCACAGTAGTAAC 58.552 40.000 0.00 0.00 0.00 2.50
100 101 6.650427 TGAAGAAAGAGAGCACAGTAGTAA 57.350 37.500 0.00 0.00 0.00 2.24
101 102 6.842437 ATGAAGAAAGAGAGCACAGTAGTA 57.158 37.500 0.00 0.00 0.00 1.82
102 103 5.736951 ATGAAGAAAGAGAGCACAGTAGT 57.263 39.130 0.00 0.00 0.00 2.73
103 104 8.715191 ATAAATGAAGAAAGAGAGCACAGTAG 57.285 34.615 0.00 0.00 0.00 2.57
104 105 8.939929 CAATAAATGAAGAAAGAGAGCACAGTA 58.060 33.333 0.00 0.00 0.00 2.74
105 106 7.574592 GCAATAAATGAAGAAAGAGAGCACAGT 60.575 37.037 0.00 0.00 0.00 3.55
106 107 6.746364 GCAATAAATGAAGAAAGAGAGCACAG 59.254 38.462 0.00 0.00 0.00 3.66
107 108 6.432162 AGCAATAAATGAAGAAAGAGAGCACA 59.568 34.615 0.00 0.00 0.00 4.57
108 109 6.850555 AGCAATAAATGAAGAAAGAGAGCAC 58.149 36.000 0.00 0.00 0.00 4.40
109 110 6.183360 CGAGCAATAAATGAAGAAAGAGAGCA 60.183 38.462 0.00 0.00 0.00 4.26
110 111 6.190962 CGAGCAATAAATGAAGAAAGAGAGC 58.809 40.000 0.00 0.00 0.00 4.09
111 112 6.190962 GCGAGCAATAAATGAAGAAAGAGAG 58.809 40.000 0.00 0.00 0.00 3.20
112 113 5.065218 GGCGAGCAATAAATGAAGAAAGAGA 59.935 40.000 0.00 0.00 0.00 3.10
113 114 5.163723 TGGCGAGCAATAAATGAAGAAAGAG 60.164 40.000 0.00 0.00 0.00 2.85
114 115 4.699735 TGGCGAGCAATAAATGAAGAAAGA 59.300 37.500 0.00 0.00 0.00 2.52
115 116 4.795278 GTGGCGAGCAATAAATGAAGAAAG 59.205 41.667 0.00 0.00 0.00 2.62
116 117 4.217334 TGTGGCGAGCAATAAATGAAGAAA 59.783 37.500 0.00 0.00 0.00 2.52
117 118 3.755905 TGTGGCGAGCAATAAATGAAGAA 59.244 39.130 0.00 0.00 0.00 2.52
118 119 3.342719 TGTGGCGAGCAATAAATGAAGA 58.657 40.909 0.00 0.00 0.00 2.87
119 120 3.763097 TGTGGCGAGCAATAAATGAAG 57.237 42.857 0.00 0.00 0.00 3.02
120 121 3.693578 TGATGTGGCGAGCAATAAATGAA 59.306 39.130 0.00 0.00 0.00 2.57
121 122 3.277715 TGATGTGGCGAGCAATAAATGA 58.722 40.909 0.00 0.00 0.00 2.57
122 123 3.696281 TGATGTGGCGAGCAATAAATG 57.304 42.857 0.00 0.00 0.00 2.32
123 124 3.254166 GGATGATGTGGCGAGCAATAAAT 59.746 43.478 0.00 0.00 0.00 1.40
124 125 2.618241 GGATGATGTGGCGAGCAATAAA 59.382 45.455 0.00 0.00 0.00 1.40
125 126 2.221169 GGATGATGTGGCGAGCAATAA 58.779 47.619 0.00 0.00 0.00 1.40
126 127 1.140652 TGGATGATGTGGCGAGCAATA 59.859 47.619 0.00 0.00 0.00 1.90
127 128 0.107066 TGGATGATGTGGCGAGCAAT 60.107 50.000 0.00 0.00 0.00 3.56
128 129 0.107066 ATGGATGATGTGGCGAGCAA 60.107 50.000 0.00 0.00 0.00 3.91
129 130 0.107066 AATGGATGATGTGGCGAGCA 60.107 50.000 0.00 0.00 0.00 4.26
130 131 0.590195 GAATGGATGATGTGGCGAGC 59.410 55.000 0.00 0.00 0.00 5.03
131 132 2.251409 AGAATGGATGATGTGGCGAG 57.749 50.000 0.00 0.00 0.00 5.03
132 133 3.580022 AGATAGAATGGATGATGTGGCGA 59.420 43.478 0.00 0.00 0.00 5.54
133 134 3.935315 AGATAGAATGGATGATGTGGCG 58.065 45.455 0.00 0.00 0.00 5.69
134 135 7.934855 ATTTAGATAGAATGGATGATGTGGC 57.065 36.000 0.00 0.00 0.00 5.01
137 138 9.322773 CGCATATTTAGATAGAATGGATGATGT 57.677 33.333 0.00 0.00 0.00 3.06
138 139 9.322773 ACGCATATTTAGATAGAATGGATGATG 57.677 33.333 0.00 0.00 0.00 3.07
139 140 9.322773 CACGCATATTTAGATAGAATGGATGAT 57.677 33.333 0.00 0.00 0.00 2.45
140 141 8.531146 TCACGCATATTTAGATAGAATGGATGA 58.469 33.333 0.00 0.00 0.00 2.92
141 142 8.707938 TCACGCATATTTAGATAGAATGGATG 57.292 34.615 0.00 0.00 0.00 3.51
142 143 9.322773 CATCACGCATATTTAGATAGAATGGAT 57.677 33.333 0.00 0.00 0.00 3.41
143 144 8.314021 ACATCACGCATATTTAGATAGAATGGA 58.686 33.333 0.00 0.00 0.00 3.41
144 145 8.484641 ACATCACGCATATTTAGATAGAATGG 57.515 34.615 0.00 0.00 0.00 3.16
150 151 9.850628 GGTAGTAACATCACGCATATTTAGATA 57.149 33.333 0.00 0.00 0.00 1.98
151 152 8.585881 AGGTAGTAACATCACGCATATTTAGAT 58.414 33.333 0.00 0.00 0.00 1.98
152 153 7.948357 AGGTAGTAACATCACGCATATTTAGA 58.052 34.615 0.00 0.00 0.00 2.10
153 154 9.125906 GTAGGTAGTAACATCACGCATATTTAG 57.874 37.037 0.00 0.00 0.00 1.85
154 155 7.804600 CGTAGGTAGTAACATCACGCATATTTA 59.195 37.037 0.00 0.00 0.00 1.40
155 156 6.639686 CGTAGGTAGTAACATCACGCATATTT 59.360 38.462 0.00 0.00 0.00 1.40
156 157 6.147581 CGTAGGTAGTAACATCACGCATATT 58.852 40.000 0.00 0.00 0.00 1.28
157 158 5.240183 ACGTAGGTAGTAACATCACGCATAT 59.760 40.000 6.85 0.00 0.00 1.78
158 159 4.576053 ACGTAGGTAGTAACATCACGCATA 59.424 41.667 6.85 0.00 0.00 3.14
159 160 3.379372 ACGTAGGTAGTAACATCACGCAT 59.621 43.478 6.85 0.00 0.00 4.73
160 161 2.749076 ACGTAGGTAGTAACATCACGCA 59.251 45.455 6.85 0.00 0.00 5.24
161 162 3.411415 ACGTAGGTAGTAACATCACGC 57.589 47.619 6.85 0.00 0.00 5.34
162 163 6.111768 AGTAACGTAGGTAGTAACATCACG 57.888 41.667 0.00 5.72 0.00 4.35
163 164 6.458888 GGGAGTAACGTAGGTAGTAACATCAC 60.459 46.154 0.00 0.00 0.00 3.06
164 165 5.590259 GGGAGTAACGTAGGTAGTAACATCA 59.410 44.000 0.00 0.00 0.00 3.07
165 166 5.590259 TGGGAGTAACGTAGGTAGTAACATC 59.410 44.000 0.00 0.00 0.00 3.06
166 167 5.509498 TGGGAGTAACGTAGGTAGTAACAT 58.491 41.667 0.00 0.00 0.00 2.71
167 168 4.917385 TGGGAGTAACGTAGGTAGTAACA 58.083 43.478 0.00 0.00 0.00 2.41
168 169 6.127619 ACAATGGGAGTAACGTAGGTAGTAAC 60.128 42.308 0.00 0.00 0.00 2.50
169 170 5.951747 ACAATGGGAGTAACGTAGGTAGTAA 59.048 40.000 0.00 0.00 0.00 2.24
170 171 5.357878 CACAATGGGAGTAACGTAGGTAGTA 59.642 44.000 0.00 0.00 0.00 1.82
171 172 4.159135 CACAATGGGAGTAACGTAGGTAGT 59.841 45.833 0.00 0.00 0.00 2.73
172 173 4.441079 CCACAATGGGAGTAACGTAGGTAG 60.441 50.000 0.00 0.00 32.67 3.18
173 174 3.448301 CCACAATGGGAGTAACGTAGGTA 59.552 47.826 0.00 0.00 32.67 3.08
174 175 2.235402 CCACAATGGGAGTAACGTAGGT 59.765 50.000 0.00 0.00 32.67 3.08
175 176 2.901249 CCACAATGGGAGTAACGTAGG 58.099 52.381 0.00 0.00 32.67 3.18
187 188 2.505819 AGCCTTAGACTACCCACAATGG 59.494 50.000 0.00 0.00 37.25 3.16
188 189 3.535561 CAGCCTTAGACTACCCACAATG 58.464 50.000 0.00 0.00 0.00 2.82
189 190 2.505819 CCAGCCTTAGACTACCCACAAT 59.494 50.000 0.00 0.00 0.00 2.71
190 191 1.906574 CCAGCCTTAGACTACCCACAA 59.093 52.381 0.00 0.00 0.00 3.33
191 192 1.203262 ACCAGCCTTAGACTACCCACA 60.203 52.381 0.00 0.00 0.00 4.17
192 193 1.481363 GACCAGCCTTAGACTACCCAC 59.519 57.143 0.00 0.00 0.00 4.61
193 194 1.078159 TGACCAGCCTTAGACTACCCA 59.922 52.381 0.00 0.00 0.00 4.51
194 195 1.861982 TGACCAGCCTTAGACTACCC 58.138 55.000 0.00 0.00 0.00 3.69
195 196 4.038162 CACTATGACCAGCCTTAGACTACC 59.962 50.000 0.00 0.00 0.00 3.18
196 197 4.038162 CCACTATGACCAGCCTTAGACTAC 59.962 50.000 0.00 0.00 0.00 2.73
197 198 4.215908 CCACTATGACCAGCCTTAGACTA 58.784 47.826 0.00 0.00 0.00 2.59
198 199 3.034635 CCACTATGACCAGCCTTAGACT 58.965 50.000 0.00 0.00 0.00 3.24
199 200 2.103263 CCCACTATGACCAGCCTTAGAC 59.897 54.545 0.00 0.00 0.00 2.59
200 201 2.398588 CCCACTATGACCAGCCTTAGA 58.601 52.381 0.00 0.00 0.00 2.10
201 202 1.417890 CCCCACTATGACCAGCCTTAG 59.582 57.143 0.00 0.00 0.00 2.18
202 203 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
203 204 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
204 205 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
205 206 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
206 207 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
207 208 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
208 209 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
209 210 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
210 211 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
211 212 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
212 213 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
213 214 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
214 215 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
215 216 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
216 217 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
217 218 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
218 219 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
219 220 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
255 256 9.809395 TGCATTATAGAGGTAGTAACATAGACT 57.191 33.333 0.00 0.00 0.00 3.24
286 287 9.766754 AGACCTCTTATGATACTGATGTATGAT 57.233 33.333 0.00 0.00 39.29 2.45
287 288 9.593565 AAGACCTCTTATGATACTGATGTATGA 57.406 33.333 0.00 0.00 35.62 2.15
300 301 9.288576 CATGGCAATAAATAAGACCTCTTATGA 57.711 33.333 8.09 1.66 45.55 2.15
301 302 8.025445 GCATGGCAATAAATAAGACCTCTTATG 58.975 37.037 8.09 0.00 45.55 1.90
302 303 7.725397 TGCATGGCAATAAATAAGACCTCTTAT 59.275 33.333 0.00 2.23 41.91 1.73
303 304 7.059788 TGCATGGCAATAAATAAGACCTCTTA 58.940 34.615 0.00 0.00 37.99 2.10
304 305 5.893255 TGCATGGCAATAAATAAGACCTCTT 59.107 36.000 0.00 0.00 34.76 2.85
305 306 5.448654 TGCATGGCAATAAATAAGACCTCT 58.551 37.500 0.00 0.00 34.76 3.69
306 307 5.772825 TGCATGGCAATAAATAAGACCTC 57.227 39.130 0.00 0.00 34.76 3.85
307 308 5.834742 TCATGCATGGCAATAAATAAGACCT 59.165 36.000 25.97 0.00 43.62 3.85
308 309 5.922544 GTCATGCATGGCAATAAATAAGACC 59.077 40.000 26.04 0.00 43.62 3.85
309 310 6.418819 GTGTCATGCATGGCAATAAATAAGAC 59.581 38.462 34.01 14.70 44.94 3.01
310 311 6.096564 TGTGTCATGCATGGCAATAAATAAGA 59.903 34.615 34.01 6.14 44.94 2.10
311 312 6.274579 TGTGTCATGCATGGCAATAAATAAG 58.725 36.000 34.01 0.13 44.94 1.73
312 313 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
313 314 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
314 315 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
315 316 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
316 317 4.888823 ACTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
317 318 4.463070 ACTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 27.05 44.94 1.90
318 319 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
319 320 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
320 321 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
321 322 2.225019 GCTACTATGTGTCATGCATGGC 59.775 50.000 24.40 24.40 0.00 4.40
322 323 3.469739 TGCTACTATGTGTCATGCATGG 58.530 45.455 25.97 10.76 0.00 3.66
323 324 4.753107 TGATGCTACTATGTGTCATGCATG 59.247 41.667 21.07 21.07 38.93 4.06
324 325 4.753610 GTGATGCTACTATGTGTCATGCAT 59.246 41.667 0.00 0.00 40.30 3.96
325 326 4.122046 GTGATGCTACTATGTGTCATGCA 58.878 43.478 0.00 0.00 35.34 3.96
326 327 4.122046 TGTGATGCTACTATGTGTCATGC 58.878 43.478 0.00 0.00 0.00 4.06
327 328 6.856135 AATGTGATGCTACTATGTGTCATG 57.144 37.500 0.00 0.00 0.00 3.07
329 330 9.696917 CTATAAATGTGATGCTACTATGTGTCA 57.303 33.333 0.00 0.00 0.00 3.58
330 331 9.698309 ACTATAAATGTGATGCTACTATGTGTC 57.302 33.333 0.00 0.00 0.00 3.67
331 332 9.481340 CACTATAAATGTGATGCTACTATGTGT 57.519 33.333 0.00 0.00 37.60 3.72
332 333 8.929746 CCACTATAAATGTGATGCTACTATGTG 58.070 37.037 0.00 0.00 37.60 3.21
333 334 8.097038 CCCACTATAAATGTGATGCTACTATGT 58.903 37.037 0.00 0.00 37.60 2.29
334 335 8.097038 ACCCACTATAAATGTGATGCTACTATG 58.903 37.037 0.00 0.00 37.60 2.23
335 336 8.207350 ACCCACTATAAATGTGATGCTACTAT 57.793 34.615 0.00 0.00 37.60 2.12
336 337 7.612065 ACCCACTATAAATGTGATGCTACTA 57.388 36.000 0.00 0.00 37.60 1.82
337 338 6.500589 ACCCACTATAAATGTGATGCTACT 57.499 37.500 0.00 0.00 37.60 2.57
338 339 7.385205 CACTACCCACTATAAATGTGATGCTAC 59.615 40.741 0.00 0.00 37.60 3.58
339 340 7.070696 ACACTACCCACTATAAATGTGATGCTA 59.929 37.037 0.00 0.00 37.60 3.49
340 341 6.126768 ACACTACCCACTATAAATGTGATGCT 60.127 38.462 0.00 0.00 37.60 3.79
341 342 6.055588 ACACTACCCACTATAAATGTGATGC 58.944 40.000 0.00 0.00 37.60 3.91
342 343 7.272244 TGACACTACCCACTATAAATGTGATG 58.728 38.462 0.00 0.00 37.60 3.07
343 344 7.432148 TGACACTACCCACTATAAATGTGAT 57.568 36.000 0.00 0.00 37.60 3.06
344 345 6.860790 TGACACTACCCACTATAAATGTGA 57.139 37.500 0.00 0.00 37.60 3.58
345 346 7.872993 CCTATGACACTACCCACTATAAATGTG 59.127 40.741 0.00 0.00 35.39 3.21
346 347 7.567622 ACCTATGACACTACCCACTATAAATGT 59.432 37.037 0.00 0.00 0.00 2.71
347 348 7.872993 CACCTATGACACTACCCACTATAAATG 59.127 40.741 0.00 0.00 0.00 2.32
348 349 7.567622 ACACCTATGACACTACCCACTATAAAT 59.432 37.037 0.00 0.00 0.00 1.40
349 350 6.899075 ACACCTATGACACTACCCACTATAAA 59.101 38.462 0.00 0.00 0.00 1.40
350 351 6.322969 CACACCTATGACACTACCCACTATAA 59.677 42.308 0.00 0.00 0.00 0.98
351 352 5.831525 CACACCTATGACACTACCCACTATA 59.168 44.000 0.00 0.00 0.00 1.31
567 568 9.067986 AGTATAGTTGAGTTTTCAGAAAAAGGG 57.932 33.333 10.00 0.00 35.10 3.95
682 2785 1.412710 AGAACGTGTATCGGCATCCAT 59.587 47.619 0.00 0.00 44.69 3.41
748 2873 4.337836 TGAGATGAGAGAAAGTCAGATCGG 59.662 45.833 0.00 0.00 0.00 4.18
749 2874 5.273170 GTGAGATGAGAGAAAGTCAGATCG 58.727 45.833 0.00 0.00 0.00 3.69
750 2875 5.451798 GGGTGAGATGAGAGAAAGTCAGATC 60.452 48.000 0.00 0.00 0.00 2.75
751 2876 4.405358 GGGTGAGATGAGAGAAAGTCAGAT 59.595 45.833 0.00 0.00 0.00 2.90
752 2877 3.766591 GGGTGAGATGAGAGAAAGTCAGA 59.233 47.826 0.00 0.00 0.00 3.27
753 2878 3.768757 AGGGTGAGATGAGAGAAAGTCAG 59.231 47.826 0.00 0.00 0.00 3.51
754 2879 3.766591 GAGGGTGAGATGAGAGAAAGTCA 59.233 47.826 0.00 0.00 0.00 3.41
755 2880 4.023291 AGAGGGTGAGATGAGAGAAAGTC 58.977 47.826 0.00 0.00 0.00 3.01
756 2881 4.023291 GAGAGGGTGAGATGAGAGAAAGT 58.977 47.826 0.00 0.00 0.00 2.66
757 2882 4.280819 AGAGAGGGTGAGATGAGAGAAAG 58.719 47.826 0.00 0.00 0.00 2.62
758 2883 4.277476 GAGAGAGGGTGAGATGAGAGAAA 58.723 47.826 0.00 0.00 0.00 2.52
759 2884 3.372566 GGAGAGAGGGTGAGATGAGAGAA 60.373 52.174 0.00 0.00 0.00 2.87
760 2885 2.174639 GGAGAGAGGGTGAGATGAGAGA 59.825 54.545 0.00 0.00 0.00 3.10
761 2886 2.091939 TGGAGAGAGGGTGAGATGAGAG 60.092 54.545 0.00 0.00 0.00 3.20
771 2896 1.309688 GGAGAGCTGGAGAGAGGGT 59.690 63.158 0.00 0.00 0.00 4.34
774 2899 1.331214 GGATGGAGAGCTGGAGAGAG 58.669 60.000 0.00 0.00 0.00 3.20
829 2954 0.322546 GATTCCCGGTGTGCTTTCCT 60.323 55.000 0.00 0.00 0.00 3.36
1263 3868 4.763793 CCATGGCAAGGAGTAATAATCAGG 59.236 45.833 1.66 0.00 0.00 3.86
1264 3869 5.624159 TCCATGGCAAGGAGTAATAATCAG 58.376 41.667 7.49 0.00 0.00 2.90
1578 4195 1.302511 GGAGCCGGAGAAGTTGCAA 60.303 57.895 5.05 0.00 0.00 4.08
1636 4258 2.797278 GGACGACGATGATGGGGCT 61.797 63.158 0.00 0.00 0.00 5.19
1753 4375 4.803426 CTCGGCGAGGACCAGCAC 62.803 72.222 28.52 3.28 34.54 4.40
2294 4916 5.348451 GTCATAAAATGTTGCATGGTTGACC 59.652 40.000 0.00 0.00 0.00 4.02
2357 4979 7.363793 GGGACAATATTTTACAACCAGCAAGAT 60.364 37.037 0.00 0.00 0.00 2.40
2376 4998 2.420129 GCTACAACCGATGAGGGACAAT 60.420 50.000 0.00 0.00 46.96 2.71
2434 5056 5.168569 CCGTTCTAACTGAAATGCTACAGA 58.831 41.667 0.00 0.00 36.30 3.41
2435 5057 4.929808 ACCGTTCTAACTGAAATGCTACAG 59.070 41.667 0.00 0.00 36.30 2.74
2547 5174 0.246635 AGCCGAGTGACGTTAGCATT 59.753 50.000 0.00 0.00 40.78 3.56
2573 5202 7.883391 TTTCAGATTAACAAAAGGGTGTGTA 57.117 32.000 0.00 0.00 0.00 2.90
2606 5236 3.766545 AGCAATAGAAAAGGGAGCACAA 58.233 40.909 0.00 0.00 0.00 3.33
2627 5257 2.203139 CACCAGGGTGTGCACGAA 60.203 61.111 13.13 0.00 40.91 3.85
2643 5273 6.372937 TCAAATGCATAACAGAATCCGTAACA 59.627 34.615 0.00 0.00 0.00 2.41
2733 5363 9.473640 CTAGGACGGTACTTTTTAAAGGATATC 57.526 37.037 0.00 0.00 40.31 1.63
2758 5388 2.832129 TCCGACCAGAGTAGCATTTTCT 59.168 45.455 0.00 0.00 0.00 2.52
2935 5565 2.567615 ACCTTGTATCTCGCCTCTTTGT 59.432 45.455 0.00 0.00 0.00 2.83
2958 5588 2.181021 GTCGTGACGTGGCCTAGG 59.819 66.667 3.67 3.67 0.00 3.02
2985 5615 0.250684 TGTTGGTGCGATGATGGTGT 60.251 50.000 0.00 0.00 0.00 4.16
3050 5680 0.537188 TCCCACTTGCCGATTCTCTC 59.463 55.000 0.00 0.00 0.00 3.20
3082 5712 1.183549 GGCTTCTCCTTCCACTACGA 58.816 55.000 0.00 0.00 0.00 3.43
3112 5742 2.034939 ACAATGTACGACCTCAACGACA 59.965 45.455 0.00 0.00 34.70 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.