Multiple sequence alignment - TraesCS3A01G492000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G492000 chr3A 100.000 3443 0 0 1 3443 719196330 719192888 0.000000e+00 6359.0
1 TraesCS3A01G492000 chr3D 93.079 1994 63 28 553 2479 589153215 589155200 0.000000e+00 2848.0
2 TraesCS3A01G492000 chr3D 82.060 864 95 30 2518 3371 589155189 589156002 0.000000e+00 682.0
3 TraesCS3A01G492000 chr3D 90.444 450 32 7 1 444 589152232 589152676 1.780000e-162 582.0
4 TraesCS3A01G492000 chr3D 82.394 142 23 2 1318 1458 32624531 32624391 4.670000e-24 122.0
5 TraesCS3A01G492000 chr3B 87.872 1781 88 69 762 2447 787655627 787653880 0.000000e+00 1975.0
6 TraesCS3A01G492000 chr3B 80.840 381 24 19 517 864 787656210 787655846 1.590000e-63 254.0
7 TraesCS3A01G492000 chr3B 83.803 142 21 2 1318 1458 55133658 55133518 2.160000e-27 134.0
8 TraesCS3A01G492000 chr3B 96.970 33 1 0 2488 2520 11106032 11106000 4.800000e-04 56.5
9 TraesCS3A01G492000 chr5D 78.963 328 59 10 1309 1631 301995357 301995679 7.480000e-52 215.0
10 TraesCS3A01G492000 chr5A 78.963 328 59 10 1309 1631 395852639 395852317 7.480000e-52 215.0
11 TraesCS3A01G492000 chr5B 78.723 329 58 12 1309 1631 344944036 344944358 3.480000e-50 209.0
12 TraesCS3A01G492000 chr6A 79.783 277 49 6 11 282 55330480 55330754 9.750000e-46 195.0
13 TraesCS3A01G492000 chr2A 97.059 34 1 0 2488 2521 739845354 739845387 1.330000e-04 58.4
14 TraesCS3A01G492000 chr2A 94.595 37 0 2 2483 2519 763403935 763403969 4.800000e-04 56.5
15 TraesCS3A01G492000 chr1D 94.595 37 0 2 2483 2519 331561707 331561673 4.800000e-04 56.5
16 TraesCS3A01G492000 chr1D 96.875 32 1 0 2488 2519 481935322 481935353 2.000000e-03 54.7
17 TraesCS3A01G492000 chr2D 96.875 32 1 0 2488 2519 17808537 17808568 2.000000e-03 54.7
18 TraesCS3A01G492000 chr2D 96.875 32 1 0 2488 2519 73496144 73496113 2.000000e-03 54.7
19 TraesCS3A01G492000 chr1B 96.875 32 1 0 2488 2519 22906938 22906969 2.000000e-03 54.7
20 TraesCS3A01G492000 chr1A 96.970 33 0 1 2483 2515 20957634 20957665 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G492000 chr3A 719192888 719196330 3442 True 6359.000000 6359 100.000000 1 3443 1 chr3A.!!$R1 3442
1 TraesCS3A01G492000 chr3D 589152232 589156002 3770 False 1370.666667 2848 88.527667 1 3371 3 chr3D.!!$F1 3370
2 TraesCS3A01G492000 chr3B 787653880 787656210 2330 True 1114.500000 1975 84.356000 517 2447 2 chr3B.!!$R3 1930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 1697 0.390860 CGGGCTACTGGAATCCTCTG 59.609 60.0 0.00 0.0 0.0 3.35 F
2007 2912 0.179116 CAGCTGTGATCGGACTGGAG 60.179 60.0 5.25 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2950 0.101579 GGTAGTGCTCTTCGAGGCTC 59.898 60.0 3.87 3.87 0.0 4.70 R
2987 3949 0.179018 ACCACTCCTTCCTTGTGCAC 60.179 55.0 10.75 10.75 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.846940 AGATCTAACCCTCACCTCAAAAGT 59.153 41.667 0.00 0.00 0.00 2.66
67 68 3.588569 ACCCTCACCTCAAAAGTAGACT 58.411 45.455 0.00 0.00 0.00 3.24
68 69 4.748701 ACCCTCACCTCAAAAGTAGACTA 58.251 43.478 0.00 0.00 0.00 2.59
79 80 6.296026 TCAAAAGTAGACTAGTGGCAATTGT 58.704 36.000 0.00 0.94 0.00 2.71
87 88 3.844211 ACTAGTGGCAATTGTCTAAGGGA 59.156 43.478 12.01 0.00 0.00 4.20
89 90 3.891049 AGTGGCAATTGTCTAAGGGATC 58.109 45.455 12.01 0.00 0.00 3.36
114 115 9.362151 TCAAATCAATACAAAGTTTCTAGGGTT 57.638 29.630 0.00 0.00 0.00 4.11
153 154 1.406539 GCACCTGAGGTTATGCCAATG 59.593 52.381 0.00 0.00 40.61 2.82
204 205 6.150140 GCCAACTCAAACACAAGATCTTCTAT 59.850 38.462 4.57 0.00 0.00 1.98
238 239 9.739276 TCACAAATGAGAAGTTAAATACTGGAT 57.261 29.630 0.00 0.00 37.12 3.41
239 240 9.994432 CACAAATGAGAAGTTAAATACTGGATC 57.006 33.333 0.00 0.00 37.12 3.36
257 258 3.645687 GGATCTCTCCTACAAGGAAGCAT 59.354 47.826 0.00 0.00 45.28 3.79
269 270 7.542130 CCTACAAGGAAGCATGTTTTTATTCAC 59.458 37.037 0.00 0.00 37.67 3.18
283 284 7.858382 TGTTTTTATTCACGATTACACTTGTGG 59.142 33.333 5.72 0.00 32.33 4.17
284 285 7.731882 TTTTATTCACGATTACACTTGTGGA 57.268 32.000 5.72 0.00 32.33 4.02
285 286 7.731882 TTTATTCACGATTACACTTGTGGAA 57.268 32.000 0.50 0.50 32.33 3.53
286 287 7.731882 TTATTCACGATTACACTTGTGGAAA 57.268 32.000 2.28 0.00 32.33 3.13
287 288 6.817765 ATTCACGATTACACTTGTGGAAAT 57.182 33.333 2.28 3.38 32.33 2.17
288 289 5.856126 TCACGATTACACTTGTGGAAATC 57.144 39.130 2.28 10.53 32.33 2.17
289 290 5.301555 TCACGATTACACTTGTGGAAATCA 58.698 37.500 20.48 7.85 32.33 2.57
290 291 5.408299 TCACGATTACACTTGTGGAAATCAG 59.592 40.000 20.48 16.90 32.33 2.90
292 293 5.639506 ACGATTACACTTGTGGAAATCAGAG 59.360 40.000 20.48 12.55 0.00 3.35
293 294 5.869344 CGATTACACTTGTGGAAATCAGAGA 59.131 40.000 20.48 0.00 0.00 3.10
294 295 6.183360 CGATTACACTTGTGGAAATCAGAGAC 60.183 42.308 20.48 4.77 0.00 3.36
295 296 3.744660 ACACTTGTGGAAATCAGAGACC 58.255 45.455 5.72 0.00 0.00 3.85
296 297 3.136443 ACACTTGTGGAAATCAGAGACCA 59.864 43.478 5.72 0.00 0.00 4.02
297 298 4.202503 ACACTTGTGGAAATCAGAGACCAT 60.203 41.667 5.72 0.00 34.87 3.55
298 299 4.394300 CACTTGTGGAAATCAGAGACCATC 59.606 45.833 0.00 0.00 34.87 3.51
299 300 4.288105 ACTTGTGGAAATCAGAGACCATCT 59.712 41.667 0.00 0.00 39.56 2.90
300 301 4.478206 TGTGGAAATCAGAGACCATCTC 57.522 45.455 0.00 0.00 43.70 2.75
316 322 3.359033 CATCTCTTCTTTCATTGCCCCA 58.641 45.455 0.00 0.00 0.00 4.96
341 347 1.699634 ACACTTGTGCTGGTCCTACAT 59.300 47.619 0.10 0.00 0.00 2.29
387 393 5.039920 TGCTAGGCATACATGATGAAGTT 57.960 39.130 0.00 0.00 37.82 2.66
412 418 6.738114 ACACACCTAAAGAACATGTTGAATG 58.262 36.000 17.58 6.88 0.00 2.67
415 421 6.545666 ACACCTAAAGAACATGTTGAATGTGA 59.454 34.615 17.58 0.00 31.80 3.58
444 450 8.539117 TCTCACTGGAAATCATCATCTTAGTA 57.461 34.615 0.00 0.00 0.00 1.82
445 451 8.417106 TCTCACTGGAAATCATCATCTTAGTAC 58.583 37.037 0.00 0.00 0.00 2.73
446 452 8.078060 TCACTGGAAATCATCATCTTAGTACA 57.922 34.615 0.00 0.00 0.00 2.90
448 454 8.771766 CACTGGAAATCATCATCTTAGTACATG 58.228 37.037 0.00 0.00 0.00 3.21
449 455 8.489489 ACTGGAAATCATCATCTTAGTACATGT 58.511 33.333 2.69 2.69 0.00 3.21
450 456 9.334947 CTGGAAATCATCATCTTAGTACATGTT 57.665 33.333 2.30 0.00 0.00 2.71
452 458 9.330063 GGAAATCATCATCTTAGTACATGTTGA 57.670 33.333 2.30 0.00 34.67 3.18
456 462 8.707938 TCATCATCTTAGTACATGTTGAACTG 57.292 34.615 2.30 0.00 29.63 3.16
458 464 8.939929 CATCATCTTAGTACATGTTGAACTGTT 58.060 33.333 2.30 0.00 0.00 3.16
459 465 8.902540 TCATCTTAGTACATGTTGAACTGTTT 57.097 30.769 2.30 0.00 0.00 2.83
466 472 7.916552 AGTACATGTTGAACTGTTTAAGACAC 58.083 34.615 2.30 0.00 33.82 3.67
467 473 7.769044 AGTACATGTTGAACTGTTTAAGACACT 59.231 33.333 2.30 0.00 33.82 3.55
468 474 9.037737 GTACATGTTGAACTGTTTAAGACACTA 57.962 33.333 2.30 0.00 33.82 2.74
469 475 7.916552 ACATGTTGAACTGTTTAAGACACTAC 58.083 34.615 0.00 0.00 33.82 2.73
470 476 7.769044 ACATGTTGAACTGTTTAAGACACTACT 59.231 33.333 0.00 0.00 33.82 2.57
483 885 8.774890 TTAAGACACTACTCTCTGTACTACTG 57.225 38.462 0.00 0.00 0.00 2.74
484 886 6.363167 AGACACTACTCTCTGTACTACTGT 57.637 41.667 0.00 0.00 0.00 3.55
486 888 7.225725 AGACACTACTCTCTGTACTACTGTTT 58.774 38.462 0.00 0.00 0.00 2.83
487 889 8.373981 AGACACTACTCTCTGTACTACTGTTTA 58.626 37.037 0.00 0.00 0.00 2.01
488 890 8.550710 ACACTACTCTCTGTACTACTGTTTAG 57.449 38.462 0.00 0.00 0.00 1.85
490 892 9.001542 CACTACTCTCTGTACTACTGTTTAGTT 57.998 37.037 0.00 0.00 38.36 2.24
491 893 9.001542 ACTACTCTCTGTACTACTGTTTAGTTG 57.998 37.037 0.00 0.00 38.36 3.16
492 894 6.679843 ACTCTCTGTACTACTGTTTAGTTGC 58.320 40.000 0.00 0.00 38.36 4.17
493 895 6.490721 ACTCTCTGTACTACTGTTTAGTTGCT 59.509 38.462 0.00 0.00 38.36 3.91
494 896 6.678878 TCTCTGTACTACTGTTTAGTTGCTG 58.321 40.000 0.00 0.00 38.36 4.41
496 898 6.812998 TCTGTACTACTGTTTAGTTGCTGTT 58.187 36.000 0.00 0.00 38.36 3.16
498 900 7.437267 TCTGTACTACTGTTTAGTTGCTGTTTC 59.563 37.037 0.00 0.00 38.36 2.78
499 901 6.480981 TGTACTACTGTTTAGTTGCTGTTTCC 59.519 38.462 0.00 0.00 38.36 3.13
500 902 5.681639 ACTACTGTTTAGTTGCTGTTTCCT 58.318 37.500 0.00 0.00 38.36 3.36
502 904 5.248870 ACTGTTTAGTTGCTGTTTCCTTG 57.751 39.130 0.00 0.00 31.66 3.61
504 906 5.185056 ACTGTTTAGTTGCTGTTTCCTTGTT 59.815 36.000 0.00 0.00 31.66 2.83
505 907 6.031751 TGTTTAGTTGCTGTTTCCTTGTTT 57.968 33.333 0.00 0.00 0.00 2.83
534 1005 4.376340 AAATTGAAGATGCCAACCGATC 57.624 40.909 0.00 0.00 0.00 3.69
535 1006 2.488204 TTGAAGATGCCAACCGATCA 57.512 45.000 0.00 0.00 0.00 2.92
536 1007 2.715749 TGAAGATGCCAACCGATCAT 57.284 45.000 0.00 0.00 0.00 2.45
537 1008 2.291365 TGAAGATGCCAACCGATCATG 58.709 47.619 0.00 0.00 0.00 3.07
538 1009 1.002033 GAAGATGCCAACCGATCATGC 60.002 52.381 0.00 0.00 0.00 4.06
539 1010 1.162181 AGATGCCAACCGATCATGCG 61.162 55.000 0.00 0.00 0.00 4.73
540 1011 2.722130 GATGCCAACCGATCATGCGC 62.722 60.000 0.00 0.00 0.00 6.09
541 1012 3.507924 GCCAACCGATCATGCGCA 61.508 61.111 14.96 14.96 0.00 6.09
542 1013 2.404789 CCAACCGATCATGCGCAC 59.595 61.111 14.90 0.00 0.00 5.34
543 1014 2.021793 CAACCGATCATGCGCACG 59.978 61.111 14.90 12.38 0.00 5.34
544 1015 3.864686 AACCGATCATGCGCACGC 61.865 61.111 14.90 8.33 42.35 5.34
547 1018 3.695409 CGATCATGCGCACGCGAT 61.695 61.111 14.90 15.76 45.51 4.58
548 1019 2.127869 GATCATGCGCACGCGATG 60.128 61.111 14.90 6.99 45.51 3.84
549 1020 3.568907 GATCATGCGCACGCGATGG 62.569 63.158 14.90 2.40 45.51 3.51
551 1022 2.969677 ATCATGCGCACGCGATGGTA 62.970 55.000 14.90 0.00 45.51 3.25
568 1039 1.028905 GTAGGTCAGCTGCTCGATCT 58.971 55.000 9.47 15.65 0.00 2.75
605 1076 2.158959 CGGTGTTGCTCGATCGGTC 61.159 63.158 16.41 7.89 0.00 4.79
606 1077 1.080093 GGTGTTGCTCGATCGGTCA 60.080 57.895 16.41 10.55 0.00 4.02
626 1097 1.009389 CACGGTCGCTCACTCCTTTC 61.009 60.000 0.00 0.00 0.00 2.62
665 1141 3.199564 CGTGCGTACGTGCTATCG 58.800 61.111 18.32 8.90 44.99 2.92
734 1227 1.301401 GCACGTCAACCTACTGGCA 60.301 57.895 0.00 0.00 36.63 4.92
735 1228 0.673644 GCACGTCAACCTACTGGCAT 60.674 55.000 0.00 0.00 36.63 4.40
760 1260 5.595952 ACTTCCAAATCCAAATCTAGGATGC 59.404 40.000 0.00 0.00 44.94 3.91
821 1321 4.024556 CACAAATTGCTACCAGATCGATCC 60.025 45.833 21.66 5.99 0.00 3.36
822 1322 4.141620 ACAAATTGCTACCAGATCGATCCT 60.142 41.667 21.66 6.67 0.00 3.24
825 1325 1.145945 TGCTACCAGATCGATCCTCCT 59.854 52.381 21.66 0.00 0.00 3.69
837 1345 2.482664 CGATCCTCCTGATGTTGACTGG 60.483 54.545 0.00 0.00 32.41 4.00
854 1363 0.905809 TGGAAAGTAGTGGCGGGCTA 60.906 55.000 2.38 0.00 0.00 3.93
867 1697 0.390860 CGGGCTACTGGAATCCTCTG 59.609 60.000 0.00 0.00 0.00 3.35
946 1786 1.863454 GCTATCGATCTTGTGCCACAG 59.137 52.381 0.00 0.00 0.00 3.66
953 1793 1.889105 CTTGTGCCACAGCGTCTGT 60.889 57.895 0.00 6.67 46.51 3.41
999 1858 4.465305 TCACCCAGCTAACTCCTAACTAAC 59.535 45.833 0.00 0.00 0.00 2.34
1010 1873 5.815581 ACTCCTAACTAACAATGGCATTGA 58.184 37.500 38.83 21.25 42.83 2.57
1090 1958 2.583593 CGTCTTCGCTAGGCAGCC 60.584 66.667 1.84 1.84 45.64 4.85
1103 1971 4.776322 CAGCCCCGTCGCCATTGA 62.776 66.667 0.00 0.00 0.00 2.57
1499 2398 2.117156 GGCCATGCAGACGCTCATT 61.117 57.895 0.00 0.00 39.64 2.57
1580 2479 2.358003 GAGCACACCAGCGAGCTT 60.358 61.111 0.00 0.00 37.48 3.74
1901 2806 1.226888 CTACTACGAGGCAACCGGC 60.227 63.158 0.00 0.00 43.74 6.13
1994 2899 1.460504 TCGATTACGACTCCAGCTGT 58.539 50.000 13.81 0.00 43.81 4.40
1997 2902 2.223595 CGATTACGACTCCAGCTGTGAT 60.224 50.000 13.81 0.00 42.66 3.06
1998 2903 2.941453 TTACGACTCCAGCTGTGATC 57.059 50.000 13.81 5.65 0.00 2.92
1999 2904 0.733150 TACGACTCCAGCTGTGATCG 59.267 55.000 22.04 22.04 35.74 3.69
2000 2905 1.226802 CGACTCCAGCTGTGATCGG 60.227 63.158 13.81 0.00 0.00 4.18
2001 2906 1.657751 CGACTCCAGCTGTGATCGGA 61.658 60.000 13.81 0.00 0.00 4.55
2002 2907 0.179124 GACTCCAGCTGTGATCGGAC 60.179 60.000 13.81 0.00 0.00 4.79
2005 2910 1.153489 CCAGCTGTGATCGGACTGG 60.153 63.158 13.81 8.84 37.64 4.00
2006 2911 1.607801 CCAGCTGTGATCGGACTGGA 61.608 60.000 13.81 0.00 41.89 3.86
2007 2912 0.179116 CAGCTGTGATCGGACTGGAG 60.179 60.000 5.25 0.00 0.00 3.86
2008 2913 1.520342 GCTGTGATCGGACTGGAGC 60.520 63.158 0.00 0.00 0.00 4.70
2009 2914 1.142748 CTGTGATCGGACTGGAGCC 59.857 63.158 0.00 0.00 0.00 4.70
2219 3130 0.866061 ATGACGACATCGCACTACGC 60.866 55.000 0.14 0.00 44.43 4.42
2292 3206 7.464830 TTTTAAGTACATCTCTCTAATGCGC 57.535 36.000 0.00 0.00 0.00 6.09
2336 3264 6.915843 CCTACGTTTGCTTAACTTGTTTTGAT 59.084 34.615 0.00 0.00 34.46 2.57
2344 3272 8.539770 TGCTTAACTTGTTTTGATAGAGAGAG 57.460 34.615 0.00 0.00 0.00 3.20
2355 3283 7.667575 TTTGATAGAGAGAGGCTGTAGAAAT 57.332 36.000 0.00 0.00 0.00 2.17
2356 3284 6.892658 TGATAGAGAGAGGCTGTAGAAATC 57.107 41.667 0.00 0.00 0.00 2.17
2360 3288 9.189156 GATAGAGAGAGGCTGTAGAAATCATAT 57.811 37.037 0.00 0.00 0.00 1.78
2365 3293 7.930865 AGAGAGGCTGTAGAAATCATATTGTTC 59.069 37.037 0.00 0.00 0.00 3.18
2430 3386 7.835822 TCAACAACAATATTACAGGAAATGGG 58.164 34.615 0.00 0.00 0.00 4.00
2475 3431 3.775316 TCCACTCCTTAGAGAATTGTCCC 59.225 47.826 0.00 0.00 43.39 4.46
2476 3432 3.118223 CCACTCCTTAGAGAATTGTCCCC 60.118 52.174 0.00 0.00 43.39 4.81
2477 3433 3.777522 CACTCCTTAGAGAATTGTCCCCT 59.222 47.826 0.00 0.00 43.39 4.79
2478 3434 4.034410 ACTCCTTAGAGAATTGTCCCCTC 58.966 47.826 0.00 0.00 43.39 4.30
2479 3435 4.033709 CTCCTTAGAGAATTGTCCCCTCA 58.966 47.826 0.00 0.00 43.39 3.86
2480 3436 3.775316 TCCTTAGAGAATTGTCCCCTCAC 59.225 47.826 0.00 0.00 0.00 3.51
2481 3437 3.118223 CCTTAGAGAATTGTCCCCTCACC 60.118 52.174 0.00 0.00 0.00 4.02
2482 3438 2.044793 AGAGAATTGTCCCCTCACCA 57.955 50.000 0.00 0.00 0.00 4.17
2483 3439 1.630878 AGAGAATTGTCCCCTCACCAC 59.369 52.381 0.00 0.00 0.00 4.16
2484 3440 1.351017 GAGAATTGTCCCCTCACCACA 59.649 52.381 0.00 0.00 0.00 4.17
2485 3441 1.995542 AGAATTGTCCCCTCACCACAT 59.004 47.619 0.00 0.00 0.00 3.21
2486 3442 2.094675 GAATTGTCCCCTCACCACATG 58.905 52.381 0.00 0.00 0.00 3.21
2487 3443 1.371467 ATTGTCCCCTCACCACATGA 58.629 50.000 0.00 0.00 35.45 3.07
2488 3444 1.371467 TTGTCCCCTCACCACATGAT 58.629 50.000 0.00 0.00 36.48 2.45
2489 3445 0.620030 TGTCCCCTCACCACATGATG 59.380 55.000 0.00 0.00 36.48 3.07
2490 3446 0.620556 GTCCCCTCACCACATGATGT 59.379 55.000 0.00 0.00 36.48 3.06
2502 3458 4.297299 CACATGATGTGGTAAGCAATCC 57.703 45.455 17.51 0.00 44.27 3.01
2503 3459 3.695556 CACATGATGTGGTAAGCAATCCA 59.304 43.478 17.51 0.00 44.27 3.41
2504 3460 4.158209 CACATGATGTGGTAAGCAATCCAA 59.842 41.667 17.51 0.00 44.27 3.53
2505 3461 4.771577 ACATGATGTGGTAAGCAATCCAAA 59.228 37.500 0.00 0.00 35.38 3.28
2506 3462 4.782019 TGATGTGGTAAGCAATCCAAAC 57.218 40.909 0.00 0.00 35.38 2.93
2507 3463 4.406456 TGATGTGGTAAGCAATCCAAACT 58.594 39.130 0.00 0.00 35.38 2.66
2508 3464 5.565509 TGATGTGGTAAGCAATCCAAACTA 58.434 37.500 0.00 0.00 35.38 2.24
2509 3465 6.186957 TGATGTGGTAAGCAATCCAAACTAT 58.813 36.000 0.00 0.00 35.38 2.12
2510 3466 6.663093 TGATGTGGTAAGCAATCCAAACTATT 59.337 34.615 0.00 0.00 35.38 1.73
2511 3467 7.831690 TGATGTGGTAAGCAATCCAAACTATTA 59.168 33.333 0.00 0.00 35.38 0.98
2512 3468 8.588290 ATGTGGTAAGCAATCCAAACTATTAA 57.412 30.769 0.00 0.00 35.38 1.40
2513 3469 8.410673 TGTGGTAAGCAATCCAAACTATTAAA 57.589 30.769 0.00 0.00 35.38 1.52
2514 3470 8.861086 TGTGGTAAGCAATCCAAACTATTAAAA 58.139 29.630 0.00 0.00 35.38 1.52
2515 3471 9.869757 GTGGTAAGCAATCCAAACTATTAAAAT 57.130 29.630 0.00 0.00 35.38 1.82
2541 3497 1.001597 GTCGACTCCATCCCGTACATC 60.002 57.143 8.70 0.00 0.00 3.06
2543 3499 1.705873 GACTCCATCCCGTACATCCT 58.294 55.000 0.00 0.00 0.00 3.24
2552 3508 0.815734 CCGTACATCCTCAAGACGGT 59.184 55.000 3.66 0.00 46.20 4.83
2564 3520 0.896940 AAGACGGTCGGAGTTGCCTA 60.897 55.000 1.89 0.00 0.00 3.93
2579 3535 1.153823 CCTACGCTGGAGTTCCACG 60.154 63.158 16.25 16.25 42.01 4.94
2585 3541 3.220999 CTGGAGTTCCACGCCGTCA 62.221 63.158 0.00 0.00 41.28 4.35
2616 3572 7.172342 ACAATAAAGTTCTACCAATGCAGGTA 58.828 34.615 4.88 4.88 43.08 3.08
2637 3593 6.014840 AGGTAGTCTTGAAATTACCGTTCTCA 60.015 38.462 0.00 0.00 40.34 3.27
2640 3596 4.000988 TCTTGAAATTACCGTTCTCAGCC 58.999 43.478 0.00 0.00 0.00 4.85
2645 3601 2.857592 TTACCGTTCTCAGCCGATAC 57.142 50.000 0.00 0.00 0.00 2.24
2650 3606 1.546834 GTTCTCAGCCGATACGTGTC 58.453 55.000 1.62 1.62 0.00 3.67
2651 3607 1.135489 GTTCTCAGCCGATACGTGTCA 60.135 52.381 13.02 0.00 0.00 3.58
2657 3613 1.135939 CCGATACGTGTCAGCGACA 59.864 57.895 13.02 7.20 40.50 4.35
2668 3624 1.068885 GTCAGCGACATCGATCCCTAG 60.069 57.143 5.26 0.00 43.02 3.02
2676 3632 2.900546 ACATCGATCCCTAGGAATCCAC 59.099 50.000 11.48 0.00 34.34 4.02
2679 3635 1.542030 CGATCCCTAGGAATCCACGAG 59.458 57.143 11.48 0.00 34.34 4.18
2681 3637 0.261991 TCCCTAGGAATCCACGAGCT 59.738 55.000 11.48 0.00 0.00 4.09
2685 3641 2.223923 CCTAGGAATCCACGAGCTGAAG 60.224 54.545 1.05 0.00 0.00 3.02
2686 3642 1.561643 AGGAATCCACGAGCTGAAGA 58.438 50.000 0.61 0.00 0.00 2.87
2687 3643 1.902508 AGGAATCCACGAGCTGAAGAA 59.097 47.619 0.61 0.00 0.00 2.52
2688 3644 2.093764 AGGAATCCACGAGCTGAAGAAG 60.094 50.000 0.61 0.00 0.00 2.85
2689 3645 2.093973 GGAATCCACGAGCTGAAGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
2705 3661 2.028930 AGAAGAAGACGATGCCGAGTTT 60.029 45.455 0.00 0.00 39.50 2.66
2711 3667 2.688446 AGACGATGCCGAGTTTCTCATA 59.312 45.455 0.00 0.00 39.50 2.15
2712 3668 3.046390 GACGATGCCGAGTTTCTCATAG 58.954 50.000 0.00 0.00 39.50 2.23
2716 3672 3.717400 TGCCGAGTTTCTCATAGCTAG 57.283 47.619 0.00 0.00 0.00 3.42
2723 3679 5.220700 CGAGTTTCTCATAGCTAGACGTCTT 60.221 44.000 25.44 8.59 0.00 3.01
2732 3688 4.159244 AGCTAGACGTCTTCCTATGTCT 57.841 45.455 25.44 6.58 45.48 3.41
2733 3689 3.880490 AGCTAGACGTCTTCCTATGTCTG 59.120 47.826 25.44 2.99 43.82 3.51
2734 3690 3.549221 GCTAGACGTCTTCCTATGTCTGC 60.549 52.174 25.44 8.77 43.82 4.26
2735 3691 2.447443 AGACGTCTTCCTATGTCTGCA 58.553 47.619 13.58 0.00 42.73 4.41
2736 3692 2.425312 AGACGTCTTCCTATGTCTGCAG 59.575 50.000 13.58 7.63 42.73 4.41
2737 3693 2.423892 GACGTCTTCCTATGTCTGCAGA 59.576 50.000 13.74 13.74 33.44 4.26
2738 3694 2.826128 ACGTCTTCCTATGTCTGCAGAA 59.174 45.455 20.19 9.51 0.00 3.02
2743 3699 4.038042 TCTTCCTATGTCTGCAGAATACCG 59.962 45.833 20.19 6.51 0.00 4.02
2748 3704 5.406780 CCTATGTCTGCAGAATACCGAAATC 59.593 44.000 20.19 2.06 0.00 2.17
2767 3723 2.888534 GCGCCGATACTGCCGAAA 60.889 61.111 0.00 0.00 0.00 3.46
2778 3734 2.904866 GCCGAAACACCACTGGCA 60.905 61.111 0.00 0.00 45.06 4.92
2779 3735 2.268076 GCCGAAACACCACTGGCAT 61.268 57.895 0.00 0.00 45.06 4.40
2780 3736 0.958382 GCCGAAACACCACTGGCATA 60.958 55.000 0.00 0.00 45.06 3.14
2781 3737 1.750193 CCGAAACACCACTGGCATAT 58.250 50.000 0.00 0.00 0.00 1.78
2782 3738 1.401552 CCGAAACACCACTGGCATATG 59.598 52.381 0.00 0.00 0.00 1.78
2784 3740 2.746904 CGAAACACCACTGGCATATGAA 59.253 45.455 6.97 0.00 0.00 2.57
2785 3741 3.378112 CGAAACACCACTGGCATATGAAT 59.622 43.478 6.97 0.00 0.00 2.57
2798 3754 6.418946 TGGCATATGAATACACAACCAACTA 58.581 36.000 6.97 0.00 0.00 2.24
2825 3781 0.107643 GTTGAGCATAGAGGGAGGCC 59.892 60.000 0.00 0.00 0.00 5.19
2828 3784 0.107643 GAGCATAGAGGGAGGCCAAC 59.892 60.000 5.01 0.00 0.00 3.77
2833 3789 1.276622 TAGAGGGAGGCCAACTTGTC 58.723 55.000 5.01 0.00 0.00 3.18
2834 3790 0.768221 AGAGGGAGGCCAACTTGTCA 60.768 55.000 5.01 0.00 0.00 3.58
2836 3792 0.555769 AGGGAGGCCAACTTGTCAAA 59.444 50.000 5.01 0.00 0.00 2.69
2838 3794 0.673985 GGAGGCCAACTTGTCAAACC 59.326 55.000 5.01 0.00 0.00 3.27
2839 3795 0.673985 GAGGCCAACTTGTCAAACCC 59.326 55.000 5.01 0.00 0.00 4.11
2840 3796 0.032615 AGGCCAACTTGTCAAACCCA 60.033 50.000 5.01 0.00 0.00 4.51
2841 3797 0.827368 GGCCAACTTGTCAAACCCAA 59.173 50.000 0.00 0.00 0.00 4.12
2843 3799 2.547855 GGCCAACTTGTCAAACCCAATC 60.548 50.000 0.00 0.00 0.00 2.67
2844 3800 2.547855 GCCAACTTGTCAAACCCAATCC 60.548 50.000 0.00 0.00 0.00 3.01
2845 3801 2.965147 CCAACTTGTCAAACCCAATCCT 59.035 45.455 0.00 0.00 0.00 3.24
2846 3802 3.243839 CCAACTTGTCAAACCCAATCCTG 60.244 47.826 0.00 0.00 0.00 3.86
2847 3803 3.312736 ACTTGTCAAACCCAATCCTGT 57.687 42.857 0.00 0.00 0.00 4.00
2848 3804 2.958355 ACTTGTCAAACCCAATCCTGTG 59.042 45.455 0.00 0.00 0.00 3.66
2849 3805 3.221771 CTTGTCAAACCCAATCCTGTGA 58.778 45.455 0.00 0.00 0.00 3.58
2850 3806 3.524095 TGTCAAACCCAATCCTGTGAT 57.476 42.857 0.00 0.00 0.00 3.06
2851 3807 3.420893 TGTCAAACCCAATCCTGTGATC 58.579 45.455 0.00 0.00 0.00 2.92
2852 3808 2.755103 GTCAAACCCAATCCTGTGATCC 59.245 50.000 0.00 0.00 0.00 3.36
2861 3817 4.039004 CCAATCCTGTGATCCTGTCTCTAG 59.961 50.000 0.00 0.00 0.00 2.43
2865 3821 5.136828 TCCTGTGATCCTGTCTCTAGATTC 58.863 45.833 0.00 0.00 0.00 2.52
2869 3825 4.576873 GTGATCCTGTCTCTAGATTCGACA 59.423 45.833 11.56 11.56 36.37 4.35
2870 3826 5.066634 GTGATCCTGTCTCTAGATTCGACAA 59.933 44.000 12.75 2.33 37.24 3.18
2881 3837 2.422832 AGATTCGACAACTCGGGTAGTC 59.577 50.000 0.00 0.00 40.58 2.59
2882 3838 0.883833 TTCGACAACTCGGGTAGTCC 59.116 55.000 0.00 0.00 40.58 3.85
2891 3847 3.912248 ACTCGGGTAGTCCTATCAATGT 58.088 45.455 0.00 0.00 30.33 2.71
2892 3848 3.890147 ACTCGGGTAGTCCTATCAATGTC 59.110 47.826 0.00 0.00 30.33 3.06
2893 3849 4.145807 CTCGGGTAGTCCTATCAATGTCT 58.854 47.826 0.00 0.00 0.00 3.41
2894 3850 5.163120 ACTCGGGTAGTCCTATCAATGTCTA 60.163 44.000 0.00 0.00 30.33 2.59
2895 3851 5.888901 TCGGGTAGTCCTATCAATGTCTAT 58.111 41.667 0.00 0.00 0.00 1.98
2896 3852 7.024345 TCGGGTAGTCCTATCAATGTCTATA 57.976 40.000 0.00 0.00 0.00 1.31
2897 3853 6.883217 TCGGGTAGTCCTATCAATGTCTATAC 59.117 42.308 0.00 0.00 0.00 1.47
2898 3854 6.183360 CGGGTAGTCCTATCAATGTCTATACG 60.183 46.154 0.00 0.00 0.00 3.06
2899 3855 6.404513 GGGTAGTCCTATCAATGTCTATACGC 60.405 46.154 0.00 0.00 0.00 4.42
2902 3858 5.184096 AGTCCTATCAATGTCTATACGCTGG 59.816 44.000 0.00 0.00 0.00 4.85
2903 3859 5.183331 GTCCTATCAATGTCTATACGCTGGA 59.817 44.000 0.00 0.00 0.00 3.86
2919 3881 3.006217 CGCTGGACATCTCATTGATAGGA 59.994 47.826 0.00 0.00 33.36 2.94
2949 3911 2.032071 GGGCGTGGTACTGCACTT 59.968 61.111 7.41 0.00 0.00 3.16
2950 3912 2.033194 GGGCGTGGTACTGCACTTC 61.033 63.158 7.41 0.00 0.00 3.01
2951 3913 1.301401 GGCGTGGTACTGCACTTCA 60.301 57.895 7.41 0.00 0.00 3.02
2957 3919 1.202867 TGGTACTGCACTTCATTGCCA 60.203 47.619 0.00 0.00 42.25 4.92
2960 3922 3.428045 GGTACTGCACTTCATTGCCAATC 60.428 47.826 0.00 0.00 42.25 2.67
2979 3941 6.403636 GCCAATCGTACAACAAGATCTTCATT 60.404 38.462 4.57 0.03 0.00 2.57
2981 3943 5.530519 TCGTACAACAAGATCTTCATTGC 57.469 39.130 21.27 10.57 0.00 3.56
2982 3944 4.391830 TCGTACAACAAGATCTTCATTGCC 59.608 41.667 21.27 14.32 0.00 4.52
2983 3945 4.437390 CGTACAACAAGATCTTCATTGCCC 60.437 45.833 21.27 14.08 0.00 5.36
2985 3947 4.091549 ACAACAAGATCTTCATTGCCCAT 58.908 39.130 21.27 6.49 0.00 4.00
2986 3948 4.529377 ACAACAAGATCTTCATTGCCCATT 59.471 37.500 21.27 6.22 0.00 3.16
2987 3949 4.730949 ACAAGATCTTCATTGCCCATTG 57.269 40.909 4.57 0.00 0.00 2.82
2988 3950 4.091549 ACAAGATCTTCATTGCCCATTGT 58.908 39.130 4.57 0.00 0.00 2.71
2989 3951 4.081862 ACAAGATCTTCATTGCCCATTGTG 60.082 41.667 4.57 0.00 0.00 3.33
2990 3952 2.429610 AGATCTTCATTGCCCATTGTGC 59.570 45.455 0.00 0.00 0.00 4.57
3000 3962 0.604578 CCCATTGTGCACAAGGAAGG 59.395 55.000 37.89 30.46 39.74 3.46
3028 3990 1.623811 GCTCACCTCACAACCCTCTTA 59.376 52.381 0.00 0.00 0.00 2.10
3030 3992 3.680196 GCTCACCTCACAACCCTCTTATC 60.680 52.174 0.00 0.00 0.00 1.75
3036 3998 5.422650 ACCTCACAACCCTCTTATCTTAGAC 59.577 44.000 0.00 0.00 0.00 2.59
3052 4014 5.690865 TCTTAGACCAAAGTGTGTCCAAAT 58.309 37.500 0.00 0.00 31.76 2.32
3053 4015 5.530915 TCTTAGACCAAAGTGTGTCCAAATG 59.469 40.000 0.00 0.00 31.76 2.32
3063 4025 0.306228 TGTCCAAATGTGCAACGTCG 59.694 50.000 0.00 0.00 42.39 5.12
3079 4041 3.834610 ACGTCGAAGGTTCTCACAATAG 58.165 45.455 0.00 0.00 0.00 1.73
3080 4042 3.255149 ACGTCGAAGGTTCTCACAATAGT 59.745 43.478 0.00 0.00 0.00 2.12
3113 4075 5.422012 GGGCTTTTCAAATCTCTGGGATTAA 59.578 40.000 2.64 0.00 43.17 1.40
3129 4092 4.723309 GGATTAATCCAGCTCAGACCAAT 58.277 43.478 26.61 0.00 46.38 3.16
3132 4095 6.097412 GGATTAATCCAGCTCAGACCAATTTT 59.903 38.462 26.61 0.00 46.38 1.82
3156 4120 1.289530 AGGAAAAAGGGGTTCACCACA 59.710 47.619 0.00 0.00 43.57 4.17
3222 4186 2.337583 CATTACCACACACCTCAGACG 58.662 52.381 0.00 0.00 0.00 4.18
3223 4187 1.694844 TTACCACACACCTCAGACGA 58.305 50.000 0.00 0.00 0.00 4.20
3225 4189 1.048601 ACCACACACCTCAGACGAAT 58.951 50.000 0.00 0.00 0.00 3.34
3226 4190 1.416401 ACCACACACCTCAGACGAATT 59.584 47.619 0.00 0.00 0.00 2.17
3227 4191 2.158813 ACCACACACCTCAGACGAATTT 60.159 45.455 0.00 0.00 0.00 1.82
3228 4192 2.878406 CCACACACCTCAGACGAATTTT 59.122 45.455 0.00 0.00 0.00 1.82
3229 4193 3.303990 CCACACACCTCAGACGAATTTTG 60.304 47.826 0.00 0.00 0.00 2.44
3230 4194 3.312421 CACACACCTCAGACGAATTTTGT 59.688 43.478 0.00 0.00 0.00 2.83
3231 4195 4.509970 CACACACCTCAGACGAATTTTGTA 59.490 41.667 0.00 0.00 0.00 2.41
3232 4196 5.179368 CACACACCTCAGACGAATTTTGTAT 59.821 40.000 0.00 0.00 0.00 2.29
3233 4197 5.763204 ACACACCTCAGACGAATTTTGTATT 59.237 36.000 0.00 0.00 0.00 1.89
3234 4198 6.079763 CACACCTCAGACGAATTTTGTATTG 58.920 40.000 0.00 0.00 0.00 1.90
3236 4200 4.142902 ACCTCAGACGAATTTTGTATTGCG 60.143 41.667 0.00 0.00 0.00 4.85
3237 4201 3.742786 TCAGACGAATTTTGTATTGCGC 58.257 40.909 0.00 0.00 0.00 6.09
3238 4202 3.187432 TCAGACGAATTTTGTATTGCGCA 59.813 39.130 5.66 5.66 0.00 6.09
3239 4203 3.911365 CAGACGAATTTTGTATTGCGCAA 59.089 39.130 27.24 27.24 0.00 4.85
3240 4204 4.558470 CAGACGAATTTTGTATTGCGCAAT 59.442 37.500 35.42 35.42 34.93 3.56
3241 4205 5.060816 CAGACGAATTTTGTATTGCGCAATT 59.939 36.000 37.79 20.78 32.50 2.32
3244 4208 6.295857 ACGAATTTTGTATTGCGCAATTTTC 58.704 32.000 37.79 26.61 32.50 2.29
3246 4210 7.008859 CGAATTTTGTATTGCGCAATTTTCTT 58.991 30.769 37.79 22.98 32.50 2.52
3247 4211 7.212413 CGAATTTTGTATTGCGCAATTTTCTTC 59.788 33.333 37.79 27.10 32.50 2.87
3248 4212 6.834959 TTTTGTATTGCGCAATTTTCTTCA 57.165 29.167 37.79 22.79 32.50 3.02
3249 4213 6.450845 TTTGTATTGCGCAATTTTCTTCAG 57.549 33.333 37.79 0.00 32.50 3.02
3250 4214 5.119931 TGTATTGCGCAATTTTCTTCAGT 57.880 34.783 37.79 15.35 32.50 3.41
3251 4215 6.247727 TGTATTGCGCAATTTTCTTCAGTA 57.752 33.333 37.79 15.32 32.50 2.74
3252 4216 6.673106 TGTATTGCGCAATTTTCTTCAGTAA 58.327 32.000 37.79 14.79 32.50 2.24
3253 4217 6.801377 TGTATTGCGCAATTTTCTTCAGTAAG 59.199 34.615 37.79 0.00 32.50 2.34
3254 4218 4.829064 TGCGCAATTTTCTTCAGTAAGT 57.171 36.364 8.16 0.00 34.13 2.24
3255 4219 4.783242 TGCGCAATTTTCTTCAGTAAGTC 58.217 39.130 8.16 0.00 34.13 3.01
3256 4220 4.274705 TGCGCAATTTTCTTCAGTAAGTCA 59.725 37.500 8.16 0.00 34.13 3.41
3282 4246 6.321181 GGTGGAATATCAAGATGCAAAAGGTA 59.679 38.462 0.00 0.00 0.00 3.08
3329 4293 6.833839 TCGAATATCTTTTTGTTGTAACCCG 58.166 36.000 0.00 0.00 0.00 5.28
3343 4307 2.051345 CCCGAACACAACAAGCGC 60.051 61.111 0.00 0.00 0.00 5.92
3364 4328 0.460987 GCCTTGTCGTCTGGGAGATG 60.461 60.000 0.00 0.00 32.57 2.90
3365 4329 0.460987 CCTTGTCGTCTGGGAGATGC 60.461 60.000 0.00 0.00 31.39 3.91
3371 4335 0.179089 CGTCTGGGAGATGCCTTCTG 60.179 60.000 0.00 0.00 33.74 3.02
3372 4336 0.908198 GTCTGGGAGATGCCTTCTGT 59.092 55.000 0.00 0.00 33.74 3.41
3373 4337 0.907486 TCTGGGAGATGCCTTCTGTG 59.093 55.000 0.00 0.00 33.74 3.66
3374 4338 0.107312 CTGGGAGATGCCTTCTGTGG 60.107 60.000 0.00 0.00 33.74 4.17
3375 4339 1.225704 GGGAGATGCCTTCTGTGGG 59.774 63.158 0.00 0.00 33.74 4.61
3376 4340 1.274703 GGGAGATGCCTTCTGTGGGA 61.275 60.000 0.00 0.00 33.74 4.37
3377 4341 0.620556 GGAGATGCCTTCTGTGGGAA 59.379 55.000 0.00 0.00 33.74 3.97
3378 4342 1.004745 GGAGATGCCTTCTGTGGGAAA 59.995 52.381 0.00 0.00 33.74 3.13
3379 4343 2.363683 GAGATGCCTTCTGTGGGAAAG 58.636 52.381 0.00 0.00 33.74 2.62
3380 4344 1.707427 AGATGCCTTCTGTGGGAAAGT 59.293 47.619 0.00 0.00 31.79 2.66
3381 4345 2.912956 AGATGCCTTCTGTGGGAAAGTA 59.087 45.455 0.00 0.00 31.79 2.24
3382 4346 3.525199 AGATGCCTTCTGTGGGAAAGTAT 59.475 43.478 0.00 0.00 31.79 2.12
3383 4347 3.350219 TGCCTTCTGTGGGAAAGTATC 57.650 47.619 0.00 0.00 33.07 2.24
3384 4348 7.388463 AGATGCCTTCTGTGGGAAAGTATCC 62.388 48.000 0.00 0.00 37.85 2.59
3394 4358 2.391678 GGAAAGTATCCGGTACTCCCA 58.608 52.381 14.49 0.00 42.83 4.37
3395 4359 2.364647 GGAAAGTATCCGGTACTCCCAG 59.635 54.545 14.49 0.00 42.83 4.45
3396 4360 1.411041 AAGTATCCGGTACTCCCAGC 58.589 55.000 14.49 0.00 42.83 4.85
3397 4361 0.260816 AGTATCCGGTACTCCCAGCA 59.739 55.000 0.00 0.00 39.46 4.41
3398 4362 1.133136 AGTATCCGGTACTCCCAGCAT 60.133 52.381 0.00 0.00 39.46 3.79
3399 4363 1.692519 GTATCCGGTACTCCCAGCATT 59.307 52.381 0.00 0.00 0.00 3.56
3400 4364 0.469917 ATCCGGTACTCCCAGCATTG 59.530 55.000 0.00 0.00 0.00 2.82
3401 4365 1.153168 CCGGTACTCCCAGCATTGG 60.153 63.158 0.00 0.00 44.60 3.16
3419 4383 4.920828 GGTTTTCCCTGTGCTCCA 57.079 55.556 0.00 0.00 0.00 3.86
3420 4384 3.125520 GGTTTTCCCTGTGCTCCAA 57.874 52.632 0.00 0.00 0.00 3.53
3421 4385 1.408969 GGTTTTCCCTGTGCTCCAAA 58.591 50.000 0.00 0.00 0.00 3.28
3422 4386 1.970640 GGTTTTCCCTGTGCTCCAAAT 59.029 47.619 0.00 0.00 0.00 2.32
3423 4387 2.368548 GGTTTTCCCTGTGCTCCAAATT 59.631 45.455 0.00 0.00 0.00 1.82
3424 4388 3.576550 GGTTTTCCCTGTGCTCCAAATTA 59.423 43.478 0.00 0.00 0.00 1.40
3425 4389 4.039852 GGTTTTCCCTGTGCTCCAAATTAA 59.960 41.667 0.00 0.00 0.00 1.40
3426 4390 5.454045 GGTTTTCCCTGTGCTCCAAATTAAA 60.454 40.000 0.00 0.00 0.00 1.52
3427 4391 5.878406 TTTCCCTGTGCTCCAAATTAAAA 57.122 34.783 0.00 0.00 0.00 1.52
3428 4392 5.878406 TTCCCTGTGCTCCAAATTAAAAA 57.122 34.783 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.880443 AGTTCCTGGAATTGCACACAT 58.120 42.857 13.07 0.00 0.00 3.21
5 6 2.622942 TCAAGTTCCTGGAATTGCACAC 59.377 45.455 13.07 0.00 0.00 3.82
46 47 3.588569 AGTCTACTTTTGAGGTGAGGGT 58.411 45.455 0.00 0.00 0.00 4.34
62 63 5.128827 CCCTTAGACAATTGCCACTAGTCTA 59.871 44.000 5.05 0.53 39.92 2.59
67 68 4.473196 TGATCCCTTAGACAATTGCCACTA 59.527 41.667 5.05 4.58 0.00 2.74
68 69 3.266772 TGATCCCTTAGACAATTGCCACT 59.733 43.478 5.05 5.56 0.00 4.00
79 80 9.753674 AACTTTGTATTGATTTGATCCCTTAGA 57.246 29.630 0.00 0.00 0.00 2.10
87 88 9.533831 ACCCTAGAAACTTTGTATTGATTTGAT 57.466 29.630 0.00 0.00 0.00 2.57
89 90 9.981114 AAACCCTAGAAACTTTGTATTGATTTG 57.019 29.630 0.00 0.00 0.00 2.32
110 111 2.452505 TGGCAAGCAACCTATAAACCC 58.547 47.619 0.00 0.00 0.00 4.11
114 115 3.799281 GCAATGGCAAGCAACCTATAA 57.201 42.857 10.00 0.00 40.72 0.98
153 154 7.437267 CAGCAAGTTTTCCATATCCATTTGATC 59.563 37.037 0.00 0.00 34.76 2.92
204 205 3.181440 ACTTCTCATTTGTGAGGAGCCAA 60.181 43.478 12.51 0.00 43.65 4.52
222 223 8.915036 TGTAGGAGAGATCCAGTATTTAACTTC 58.085 37.037 0.00 0.00 35.76 3.01
224 225 8.840200 TTGTAGGAGAGATCCAGTATTTAACT 57.160 34.615 0.00 0.00 39.81 2.24
229 230 6.031964 TCCTTGTAGGAGAGATCCAGTATT 57.968 41.667 0.00 0.00 40.06 1.89
231 232 5.450453 CTTCCTTGTAGGAGAGATCCAGTA 58.550 45.833 0.00 0.00 46.73 2.74
232 233 4.285863 CTTCCTTGTAGGAGAGATCCAGT 58.714 47.826 0.00 0.00 46.73 4.00
233 234 3.069443 GCTTCCTTGTAGGAGAGATCCAG 59.931 52.174 0.00 0.00 46.73 3.86
234 235 3.034635 GCTTCCTTGTAGGAGAGATCCA 58.965 50.000 0.00 0.00 46.73 3.41
235 236 3.034635 TGCTTCCTTGTAGGAGAGATCC 58.965 50.000 0.00 0.00 46.73 3.36
236 237 4.100808 ACATGCTTCCTTGTAGGAGAGATC 59.899 45.833 0.00 0.00 46.73 2.75
237 238 4.036518 ACATGCTTCCTTGTAGGAGAGAT 58.963 43.478 0.00 0.00 46.73 2.75
238 239 3.445008 ACATGCTTCCTTGTAGGAGAGA 58.555 45.455 0.00 0.00 46.73 3.10
239 240 3.902881 ACATGCTTCCTTGTAGGAGAG 57.097 47.619 0.00 0.00 46.73 3.20
257 258 7.858382 CCACAAGTGTAATCGTGAATAAAAACA 59.142 33.333 0.00 0.00 0.00 2.83
269 270 5.869344 TCTCTGATTTCCACAAGTGTAATCG 59.131 40.000 14.83 11.60 34.87 3.34
290 291 4.335037 GGCAATGAAAGAAGAGATGGTCTC 59.665 45.833 0.00 0.00 43.70 3.36
292 293 3.379688 GGGCAATGAAAGAAGAGATGGTC 59.620 47.826 0.00 0.00 0.00 4.02
293 294 3.359950 GGGCAATGAAAGAAGAGATGGT 58.640 45.455 0.00 0.00 0.00 3.55
294 295 2.692041 GGGGCAATGAAAGAAGAGATGG 59.308 50.000 0.00 0.00 0.00 3.51
295 296 3.359033 TGGGGCAATGAAAGAAGAGATG 58.641 45.455 0.00 0.00 0.00 2.90
296 297 3.744940 TGGGGCAATGAAAGAAGAGAT 57.255 42.857 0.00 0.00 0.00 2.75
297 298 3.744940 ATGGGGCAATGAAAGAAGAGA 57.255 42.857 0.00 0.00 0.00 3.10
298 299 3.677976 GCAATGGGGCAATGAAAGAAGAG 60.678 47.826 0.00 0.00 0.00 2.85
299 300 2.234414 GCAATGGGGCAATGAAAGAAGA 59.766 45.455 0.00 0.00 0.00 2.87
300 301 2.027929 TGCAATGGGGCAATGAAAGAAG 60.028 45.455 0.00 0.00 41.65 2.85
329 335 5.897377 AATTGTACAAATGTAGGACCAGC 57.103 39.130 13.23 0.00 0.00 4.85
341 347 3.452627 AGTTGGTGCCCAAATTGTACAAA 59.547 39.130 13.23 0.00 45.73 2.83
387 393 7.500892 ACATTCAACATGTTCTTTAGGTGTGTA 59.499 33.333 8.48 0.00 0.00 2.90
415 421 6.719301 AGATGATGATTTCCAGTGAGAAAGT 58.281 36.000 11.00 2.85 39.04 2.66
444 450 7.769044 AGTAGTGTCTTAAACAGTTCAACATGT 59.231 33.333 0.00 0.00 41.81 3.21
445 451 8.142994 AGTAGTGTCTTAAACAGTTCAACATG 57.857 34.615 0.00 0.00 41.81 3.21
446 452 8.204836 AGAGTAGTGTCTTAAACAGTTCAACAT 58.795 33.333 0.00 0.00 41.81 2.71
448 454 7.921745 AGAGAGTAGTGTCTTAAACAGTTCAAC 59.078 37.037 0.00 0.00 41.81 3.18
449 455 7.921214 CAGAGAGTAGTGTCTTAAACAGTTCAA 59.079 37.037 0.00 0.00 41.81 2.69
450 456 7.068348 ACAGAGAGTAGTGTCTTAAACAGTTCA 59.932 37.037 0.00 0.00 41.81 3.18
452 458 7.349412 ACAGAGAGTAGTGTCTTAAACAGTT 57.651 36.000 0.00 0.00 41.81 3.16
453 459 6.963083 ACAGAGAGTAGTGTCTTAAACAGT 57.037 37.500 0.00 4.35 43.99 3.55
454 460 8.101654 AGTACAGAGAGTAGTGTCTTAAACAG 57.898 38.462 0.00 0.00 38.97 3.16
456 462 9.218440 AGTAGTACAGAGAGTAGTGTCTTAAAC 57.782 37.037 2.52 0.00 36.99 2.01
458 464 8.373981 ACAGTAGTACAGAGAGTAGTGTCTTAA 58.626 37.037 2.52 0.00 35.01 1.85
459 465 7.905265 ACAGTAGTACAGAGAGTAGTGTCTTA 58.095 38.462 2.52 0.00 35.01 2.10
461 467 6.363167 ACAGTAGTACAGAGAGTAGTGTCT 57.637 41.667 2.52 0.00 35.01 3.41
462 468 7.437793 AAACAGTAGTACAGAGAGTAGTGTC 57.562 40.000 2.52 0.00 37.74 3.67
466 472 7.964011 GCAACTAAACAGTAGTACAGAGAGTAG 59.036 40.741 2.52 0.00 32.19 2.57
467 473 7.664731 AGCAACTAAACAGTAGTACAGAGAGTA 59.335 37.037 2.52 0.00 0.00 2.59
468 474 6.490721 AGCAACTAAACAGTAGTACAGAGAGT 59.509 38.462 2.52 0.00 0.00 3.24
469 475 6.804295 CAGCAACTAAACAGTAGTACAGAGAG 59.196 42.308 2.52 0.00 0.00 3.20
470 476 6.264744 ACAGCAACTAAACAGTAGTACAGAGA 59.735 38.462 2.52 0.00 0.00 3.10
483 885 8.468720 TTTAAACAAGGAAACAGCAACTAAAC 57.531 30.769 0.00 0.00 0.00 2.01
484 886 9.660180 ATTTTAAACAAGGAAACAGCAACTAAA 57.340 25.926 0.00 0.00 0.00 1.85
486 888 8.470805 TGATTTTAAACAAGGAAACAGCAACTA 58.529 29.630 0.00 0.00 0.00 2.24
487 889 7.327214 TGATTTTAAACAAGGAAACAGCAACT 58.673 30.769 0.00 0.00 0.00 3.16
488 890 7.532682 TGATTTTAAACAAGGAAACAGCAAC 57.467 32.000 0.00 0.00 0.00 4.17
490 892 8.553459 TTTTGATTTTAAACAAGGAAACAGCA 57.447 26.923 0.00 0.00 0.00 4.41
504 906 8.782144 GGTTGGCATCTTCAATTTTGATTTTAA 58.218 29.630 0.00 0.00 37.00 1.52
505 907 7.117523 CGGTTGGCATCTTCAATTTTGATTTTA 59.882 33.333 0.00 0.00 37.00 1.52
524 978 3.507924 TGCGCATGATCGGTTGGC 61.508 61.111 5.66 0.00 0.00 4.52
534 1005 3.214306 CTACCATCGCGTGCGCATG 62.214 63.158 25.25 25.25 42.06 4.06
535 1006 2.961721 CTACCATCGCGTGCGCAT 60.962 61.111 15.91 0.00 42.06 4.73
538 1009 2.954868 GACCTACCATCGCGTGCG 60.955 66.667 5.77 8.14 41.35 5.34
539 1010 1.878522 CTGACCTACCATCGCGTGC 60.879 63.158 5.77 0.00 0.00 5.34
540 1011 1.878522 GCTGACCTACCATCGCGTG 60.879 63.158 5.77 3.64 0.00 5.34
541 1012 2.052690 AGCTGACCTACCATCGCGT 61.053 57.895 5.77 0.00 0.00 6.01
542 1013 1.589993 CAGCTGACCTACCATCGCG 60.590 63.158 8.42 0.00 0.00 5.87
543 1014 1.884926 GCAGCTGACCTACCATCGC 60.885 63.158 20.43 0.00 0.00 4.58
544 1015 0.249238 GAGCAGCTGACCTACCATCG 60.249 60.000 20.43 0.00 0.00 3.84
545 1016 0.249238 CGAGCAGCTGACCTACCATC 60.249 60.000 20.43 0.00 0.00 3.51
546 1017 0.684479 TCGAGCAGCTGACCTACCAT 60.684 55.000 20.43 0.00 0.00 3.55
547 1018 0.684479 ATCGAGCAGCTGACCTACCA 60.684 55.000 20.43 0.00 0.00 3.25
548 1019 0.031449 GATCGAGCAGCTGACCTACC 59.969 60.000 20.43 0.00 0.00 3.18
549 1020 1.028905 AGATCGAGCAGCTGACCTAC 58.971 55.000 20.43 0.00 0.00 3.18
550 1021 2.640316 TAGATCGAGCAGCTGACCTA 57.360 50.000 20.43 5.57 0.00 3.08
551 1022 1.612950 CATAGATCGAGCAGCTGACCT 59.387 52.381 20.43 5.58 0.00 3.85
568 1039 1.676678 GCTCGGTCTGGTCAGCCATA 61.677 60.000 10.41 0.00 45.05 2.74
592 1063 1.443702 CGTGTGACCGATCGAGCAA 60.444 57.895 18.66 2.86 0.00 3.91
600 1071 4.034258 GAGCGACCGTGTGACCGA 62.034 66.667 0.00 0.00 0.00 4.69
605 1076 2.421877 AAGGAGTGAGCGACCGTGTG 62.422 60.000 0.00 0.00 0.00 3.82
606 1077 1.745320 AAAGGAGTGAGCGACCGTGT 61.745 55.000 0.00 0.00 0.00 4.49
626 1097 3.490759 GCATGGTCACTCACGCGG 61.491 66.667 12.47 0.00 0.00 6.46
665 1141 4.084888 GTACGTGCCGTTGCTGCC 62.085 66.667 0.00 0.00 41.54 4.85
681 1157 0.740516 TGCATGCATGACATCGACGT 60.741 50.000 30.64 0.00 36.64 4.34
682 1158 0.584876 ATGCATGCATGACATCGACG 59.415 50.000 31.74 0.20 36.64 5.12
685 1161 0.240145 GGGATGCATGCATGACATCG 59.760 55.000 36.73 13.84 39.74 3.84
687 1163 0.466739 ACGGGATGCATGCATGACAT 60.467 50.000 36.73 28.02 40.66 3.06
688 1164 0.680601 AACGGGATGCATGCATGACA 60.681 50.000 36.73 24.96 36.70 3.58
689 1165 0.248743 CAACGGGATGCATGCATGAC 60.249 55.000 36.73 26.61 36.70 3.06
690 1166 1.385756 CCAACGGGATGCATGCATGA 61.386 55.000 36.73 15.31 36.70 3.07
734 1227 7.449704 GCATCCTAGATTTGGATTTGGAAGTAT 59.550 37.037 0.00 0.00 41.94 2.12
735 1228 6.772716 GCATCCTAGATTTGGATTTGGAAGTA 59.227 38.462 0.00 0.00 41.94 2.24
821 1321 4.013267 ACTTTCCAGTCAACATCAGGAG 57.987 45.455 0.00 0.00 0.00 3.69
822 1322 4.593206 ACTACTTTCCAGTCAACATCAGGA 59.407 41.667 0.00 0.00 34.06 3.86
825 1325 4.641396 CCACTACTTTCCAGTCAACATCA 58.359 43.478 0.00 0.00 34.06 3.07
837 1345 0.535797 AGTAGCCCGCCACTACTTTC 59.464 55.000 4.87 0.00 46.36 2.62
854 1363 7.496346 TTGTTAAGTATCAGAGGATTCCAGT 57.504 36.000 5.29 0.00 34.89 4.00
867 1697 5.351740 GGGTGCTCAGAGTTTGTTAAGTATC 59.648 44.000 0.00 0.00 0.00 2.24
946 1786 3.366440 AAAGGGATCGTATACAGACGC 57.634 47.619 3.32 2.00 42.62 5.19
999 1858 1.134367 CAGGAGCTGTCAATGCCATTG 59.866 52.381 11.24 11.24 41.57 2.82
1499 2398 2.499205 CGCATCTCCGCCTGGTAA 59.501 61.111 0.00 0.00 36.30 2.85
1545 2444 1.322442 TCGAGGTCGATGATCATGCT 58.678 50.000 14.30 0.00 44.22 3.79
1793 2698 1.873572 GTGATCGGCGCCATTTTGC 60.874 57.895 28.98 9.47 0.00 3.68
1999 2904 0.465705 TTGATCATCGGCTCCAGTCC 59.534 55.000 0.00 0.00 0.00 3.85
2000 2905 1.137872 AGTTGATCATCGGCTCCAGTC 59.862 52.381 0.00 0.00 0.00 3.51
2001 2906 1.134580 CAGTTGATCATCGGCTCCAGT 60.135 52.381 0.00 0.00 0.00 4.00
2002 2907 1.579698 CAGTTGATCATCGGCTCCAG 58.420 55.000 0.00 0.00 0.00 3.86
2005 2910 1.863267 CTCCAGTTGATCATCGGCTC 58.137 55.000 0.00 0.00 0.00 4.70
2006 2911 0.179062 GCTCCAGTTGATCATCGGCT 60.179 55.000 0.00 0.00 0.00 5.52
2007 2912 1.162800 GGCTCCAGTTGATCATCGGC 61.163 60.000 0.00 1.44 0.00 5.54
2008 2913 0.877649 CGGCTCCAGTTGATCATCGG 60.878 60.000 0.00 2.47 0.00 4.18
2009 2914 0.103026 TCGGCTCCAGTTGATCATCG 59.897 55.000 0.00 0.00 0.00 3.84
2010 2915 2.141517 CATCGGCTCCAGTTGATCATC 58.858 52.381 0.00 0.00 0.00 2.92
2012 2917 1.194218 TCATCGGCTCCAGTTGATCA 58.806 50.000 0.00 0.00 0.00 2.92
2039 2950 0.101579 GGTAGTGCTCTTCGAGGCTC 59.898 60.000 3.87 3.87 0.00 4.70
2201 3112 1.513373 GCGTAGTGCGATGTCGTCA 60.513 57.895 4.28 0.38 44.77 4.35
2219 3130 1.663739 AGCCATGTGTGCTGCTTTG 59.336 52.632 0.00 0.00 37.76 2.77
2292 3206 1.137479 GGCACATGAATGGGTTGATGG 59.863 52.381 0.00 0.00 33.82 3.51
2336 3264 8.801299 CAATATGATTTCTACAGCCTCTCTCTA 58.199 37.037 0.00 0.00 0.00 2.43
2344 3272 9.860898 AAAAAGAACAATATGATTTCTACAGCC 57.139 29.630 0.00 0.00 0.00 4.85
2381 3317 6.615264 TTAATATAGACTATAGAGCCGCGG 57.385 41.667 24.05 24.05 0.00 6.46
2411 3367 6.865834 TTTGCCCATTTCCTGTAATATTGT 57.134 33.333 0.00 0.00 0.00 2.71
2414 3370 6.865834 TGTTTTGCCCATTTCCTGTAATAT 57.134 33.333 0.00 0.00 0.00 1.28
2450 3406 6.099845 GGGACAATTCTCTAAGGAGTGGATTA 59.900 42.308 0.00 0.00 40.29 1.75
2482 3438 3.966979 TGGATTGCTTACCACATCATGT 58.033 40.909 0.00 0.00 0.00 3.21
2483 3439 4.987408 TTGGATTGCTTACCACATCATG 57.013 40.909 0.00 0.00 35.81 3.07
2484 3440 5.018809 AGTTTGGATTGCTTACCACATCAT 58.981 37.500 0.00 0.00 35.81 2.45
2485 3441 4.406456 AGTTTGGATTGCTTACCACATCA 58.594 39.130 0.00 0.00 35.81 3.07
2486 3442 6.699575 ATAGTTTGGATTGCTTACCACATC 57.300 37.500 0.00 0.00 35.81 3.06
2487 3443 8.588290 TTAATAGTTTGGATTGCTTACCACAT 57.412 30.769 0.00 0.00 35.81 3.21
2488 3444 8.410673 TTTAATAGTTTGGATTGCTTACCACA 57.589 30.769 0.00 0.00 35.81 4.17
2489 3445 9.869757 ATTTTAATAGTTTGGATTGCTTACCAC 57.130 29.630 0.00 0.00 35.81 4.16
2508 3464 8.630037 GGGATGGAGTCGACAATTTATTTTAAT 58.370 33.333 19.50 0.00 0.00 1.40
2509 3465 7.201661 CGGGATGGAGTCGACAATTTATTTTAA 60.202 37.037 19.50 0.00 0.00 1.52
2510 3466 6.259167 CGGGATGGAGTCGACAATTTATTTTA 59.741 38.462 19.50 0.00 0.00 1.52
2511 3467 5.065988 CGGGATGGAGTCGACAATTTATTTT 59.934 40.000 19.50 0.00 0.00 1.82
2512 3468 4.574828 CGGGATGGAGTCGACAATTTATTT 59.425 41.667 19.50 0.00 0.00 1.40
2513 3469 4.127171 CGGGATGGAGTCGACAATTTATT 58.873 43.478 19.50 0.00 0.00 1.40
2514 3470 3.134081 ACGGGATGGAGTCGACAATTTAT 59.866 43.478 19.50 4.48 0.00 1.40
2515 3471 2.498481 ACGGGATGGAGTCGACAATTTA 59.502 45.455 19.50 0.00 0.00 1.40
2516 3472 1.278127 ACGGGATGGAGTCGACAATTT 59.722 47.619 19.50 0.00 0.00 1.82
2517 3473 0.902531 ACGGGATGGAGTCGACAATT 59.097 50.000 19.50 0.00 0.00 2.32
2518 3474 1.407979 GTACGGGATGGAGTCGACAAT 59.592 52.381 19.50 8.23 0.00 2.71
2519 3475 0.813184 GTACGGGATGGAGTCGACAA 59.187 55.000 19.50 2.94 0.00 3.18
2520 3476 0.322726 TGTACGGGATGGAGTCGACA 60.323 55.000 19.50 0.00 0.00 4.35
2521 3477 1.001597 GATGTACGGGATGGAGTCGAC 60.002 57.143 7.70 7.70 0.00 4.20
2522 3478 1.315690 GATGTACGGGATGGAGTCGA 58.684 55.000 0.00 0.00 0.00 4.20
2523 3479 0.314302 GGATGTACGGGATGGAGTCG 59.686 60.000 0.00 0.00 0.00 4.18
2524 3480 1.614413 GAGGATGTACGGGATGGAGTC 59.386 57.143 0.00 0.00 0.00 3.36
2525 3481 1.063190 TGAGGATGTACGGGATGGAGT 60.063 52.381 0.00 0.00 0.00 3.85
2541 3497 0.388649 CAACTCCGACCGTCTTGAGG 60.389 60.000 15.43 2.81 0.00 3.86
2543 3499 1.006571 GCAACTCCGACCGTCTTGA 60.007 57.895 3.14 0.00 0.00 3.02
2579 3535 5.855235 GAACTTTATTGTTCTAGTGACGGC 58.145 41.667 0.00 0.00 42.03 5.68
2616 3572 4.691216 GCTGAGAACGGTAATTTCAAGACT 59.309 41.667 0.00 0.00 0.00 3.24
2620 3576 2.739913 CGGCTGAGAACGGTAATTTCAA 59.260 45.455 0.00 0.00 0.00 2.69
2621 3577 2.028839 TCGGCTGAGAACGGTAATTTCA 60.029 45.455 0.00 0.00 0.00 2.69
2637 3593 2.102357 CGCTGACACGTATCGGCT 59.898 61.111 24.12 0.00 46.98 5.52
2640 3596 1.113253 GATGTCGCTGACACGTATCG 58.887 55.000 12.43 0.00 45.65 2.92
2645 3601 1.202973 GGATCGATGTCGCTGACACG 61.203 60.000 0.54 15.71 45.65 4.49
2650 3606 0.242286 CCTAGGGATCGATGTCGCTG 59.758 60.000 14.04 5.96 40.98 5.18
2651 3607 0.110678 TCCTAGGGATCGATGTCGCT 59.889 55.000 9.46 6.75 43.01 4.93
2657 3613 2.171840 CGTGGATTCCTAGGGATCGAT 58.828 52.381 21.79 0.00 0.00 3.59
2668 3624 2.093973 TCTTCTTCAGCTCGTGGATTCC 60.094 50.000 0.00 0.00 0.00 3.01
2676 3632 2.620779 TCGTCTTCTTCTTCAGCTCG 57.379 50.000 0.00 0.00 0.00 5.03
2679 3635 1.663135 GGCATCGTCTTCTTCTTCAGC 59.337 52.381 0.00 0.00 0.00 4.26
2681 3637 1.544246 TCGGCATCGTCTTCTTCTTCA 59.456 47.619 0.00 0.00 37.69 3.02
2685 3641 1.997669 AACTCGGCATCGTCTTCTTC 58.002 50.000 0.00 0.00 37.69 2.87
2686 3642 2.028930 AGAAACTCGGCATCGTCTTCTT 60.029 45.455 0.00 0.00 37.69 2.52
2687 3643 1.546476 AGAAACTCGGCATCGTCTTCT 59.454 47.619 0.00 0.00 37.69 2.85
2688 3644 1.921230 GAGAAACTCGGCATCGTCTTC 59.079 52.381 0.00 0.00 37.69 2.87
2689 3645 1.272490 TGAGAAACTCGGCATCGTCTT 59.728 47.619 0.00 0.00 37.69 3.01
2705 3661 4.425180 AGGAAGACGTCTAGCTATGAGA 57.575 45.455 20.39 0.00 0.00 3.27
2711 3667 3.880490 CAGACATAGGAAGACGTCTAGCT 59.120 47.826 20.39 2.53 36.60 3.32
2712 3668 3.549221 GCAGACATAGGAAGACGTCTAGC 60.549 52.174 20.39 13.89 36.60 3.42
2716 3672 2.423892 TCTGCAGACATAGGAAGACGTC 59.576 50.000 13.74 7.70 0.00 4.34
2723 3679 3.562182 TCGGTATTCTGCAGACATAGGA 58.438 45.455 18.03 8.84 0.00 2.94
2755 3711 1.732259 CAGTGGTGTTTCGGCAGTATC 59.268 52.381 0.00 0.00 0.00 2.24
2756 3712 1.610624 CCAGTGGTGTTTCGGCAGTAT 60.611 52.381 0.00 0.00 0.00 2.12
2757 3713 0.250124 CCAGTGGTGTTTCGGCAGTA 60.250 55.000 0.00 0.00 0.00 2.74
2758 3714 1.525995 CCAGTGGTGTTTCGGCAGT 60.526 57.895 0.00 0.00 0.00 4.40
2759 3715 2.908073 GCCAGTGGTGTTTCGGCAG 61.908 63.158 11.74 0.00 42.50 4.85
2760 3716 2.904866 GCCAGTGGTGTTTCGGCA 60.905 61.111 11.74 0.00 42.50 5.69
2767 3723 4.199310 GTGTATTCATATGCCAGTGGTGT 58.801 43.478 11.74 2.19 0.00 4.16
2778 3734 6.159751 AGGGGTAGTTGGTTGTGTATTCATAT 59.840 38.462 0.00 0.00 0.00 1.78
2779 3735 5.489637 AGGGGTAGTTGGTTGTGTATTCATA 59.510 40.000 0.00 0.00 0.00 2.15
2780 3736 4.291249 AGGGGTAGTTGGTTGTGTATTCAT 59.709 41.667 0.00 0.00 0.00 2.57
2781 3737 3.653836 AGGGGTAGTTGGTTGTGTATTCA 59.346 43.478 0.00 0.00 0.00 2.57
2782 3738 4.296621 AGGGGTAGTTGGTTGTGTATTC 57.703 45.455 0.00 0.00 0.00 1.75
2784 3740 3.196254 CGTAGGGGTAGTTGGTTGTGTAT 59.804 47.826 0.00 0.00 0.00 2.29
2785 3741 2.562298 CGTAGGGGTAGTTGGTTGTGTA 59.438 50.000 0.00 0.00 0.00 2.90
2798 3754 2.032620 CTCTATGCTCAACGTAGGGGT 58.967 52.381 0.00 0.00 38.27 4.95
2825 3781 3.384467 ACAGGATTGGGTTTGACAAGTTG 59.616 43.478 0.00 0.00 0.00 3.16
2828 3784 3.221771 TCACAGGATTGGGTTTGACAAG 58.778 45.455 0.00 0.00 0.00 3.16
2833 3789 2.756760 CAGGATCACAGGATTGGGTTTG 59.243 50.000 0.00 0.00 32.67 2.93
2834 3790 2.379907 ACAGGATCACAGGATTGGGTTT 59.620 45.455 0.00 0.00 32.67 3.27
2836 3792 1.561542 GACAGGATCACAGGATTGGGT 59.438 52.381 0.00 0.00 32.67 4.51
2838 3794 2.770802 AGAGACAGGATCACAGGATTGG 59.229 50.000 0.00 0.00 32.67 3.16
2839 3795 4.892345 TCTAGAGACAGGATCACAGGATTG 59.108 45.833 0.00 0.00 32.67 2.67
2840 3796 5.136068 TCTAGAGACAGGATCACAGGATT 57.864 43.478 0.00 0.00 32.67 3.01
2841 3797 4.805140 TCTAGAGACAGGATCACAGGAT 57.195 45.455 0.00 0.00 36.13 3.24
2843 3799 4.023279 CGAATCTAGAGACAGGATCACAGG 60.023 50.000 0.00 0.00 0.00 4.00
2844 3800 4.819088 TCGAATCTAGAGACAGGATCACAG 59.181 45.833 0.00 0.00 0.00 3.66
2845 3801 4.576873 GTCGAATCTAGAGACAGGATCACA 59.423 45.833 0.00 0.00 35.19 3.58
2846 3802 4.576873 TGTCGAATCTAGAGACAGGATCAC 59.423 45.833 8.76 0.00 39.63 3.06
2847 3803 4.781934 TGTCGAATCTAGAGACAGGATCA 58.218 43.478 8.76 0.00 39.63 2.92
2848 3804 5.298276 AGTTGTCGAATCTAGAGACAGGATC 59.702 44.000 11.75 6.37 44.37 3.36
2849 3805 5.197451 AGTTGTCGAATCTAGAGACAGGAT 58.803 41.667 11.75 2.53 44.37 3.24
2850 3806 4.590918 AGTTGTCGAATCTAGAGACAGGA 58.409 43.478 11.75 0.00 44.37 3.86
2851 3807 4.915704 GAGTTGTCGAATCTAGAGACAGG 58.084 47.826 11.75 0.00 44.37 4.00
2865 3821 1.742761 TAGGACTACCCGAGTTGTCG 58.257 55.000 5.67 0.00 45.99 4.35
2869 3825 4.287552 ACATTGATAGGACTACCCGAGTT 58.712 43.478 0.00 0.00 39.06 3.01
2870 3826 3.890147 GACATTGATAGGACTACCCGAGT 59.110 47.826 0.00 0.00 42.90 4.18
2881 3837 5.048013 TGTCCAGCGTATAGACATTGATAGG 60.048 44.000 0.00 0.00 35.67 2.57
2882 3838 6.013842 TGTCCAGCGTATAGACATTGATAG 57.986 41.667 0.00 0.00 35.67 2.08
2891 3847 4.827284 TCAATGAGATGTCCAGCGTATAGA 59.173 41.667 0.00 0.00 0.00 1.98
2892 3848 5.126396 TCAATGAGATGTCCAGCGTATAG 57.874 43.478 0.00 0.00 0.00 1.31
2893 3849 5.728637 ATCAATGAGATGTCCAGCGTATA 57.271 39.130 0.00 0.00 35.06 1.47
2894 3850 4.613925 ATCAATGAGATGTCCAGCGTAT 57.386 40.909 0.00 0.00 35.06 3.06
2895 3851 4.021981 CCTATCAATGAGATGTCCAGCGTA 60.022 45.833 0.00 0.00 37.57 4.42
2896 3852 2.996249 ATCAATGAGATGTCCAGCGT 57.004 45.000 0.00 0.00 35.06 5.07
2897 3853 3.006217 TCCTATCAATGAGATGTCCAGCG 59.994 47.826 0.00 0.00 37.57 5.18
2898 3854 4.040217 AGTCCTATCAATGAGATGTCCAGC 59.960 45.833 0.00 0.00 37.57 4.85
2899 3855 5.804944 AGTCCTATCAATGAGATGTCCAG 57.195 43.478 0.00 0.00 37.57 3.86
2902 3858 6.491745 TCAGGTAGTCCTATCAATGAGATGTC 59.508 42.308 0.00 0.00 43.07 3.06
2903 3859 6.377080 TCAGGTAGTCCTATCAATGAGATGT 58.623 40.000 0.00 0.00 43.07 3.06
2906 3862 6.614657 TGATCAGGTAGTCCTATCAATGAGA 58.385 40.000 0.00 0.00 43.07 3.27
2908 3864 6.268617 CCTTGATCAGGTAGTCCTATCAATGA 59.731 42.308 3.93 0.00 43.07 2.57
2919 3881 0.537188 CACGCCCTTGATCAGGTAGT 59.463 55.000 3.93 1.97 42.02 2.73
2925 3887 0.249120 CAGTACCACGCCCTTGATCA 59.751 55.000 0.00 0.00 0.00 2.92
2928 3890 2.345991 GCAGTACCACGCCCTTGA 59.654 61.111 0.00 0.00 0.00 3.02
2935 3897 1.135972 GCAATGAAGTGCAGTACCACG 60.136 52.381 0.00 0.00 44.29 4.94
2949 3911 4.068599 TCTTGTTGTACGATTGGCAATGA 58.931 39.130 19.07 1.34 0.00 2.57
2950 3912 4.418013 TCTTGTTGTACGATTGGCAATG 57.582 40.909 19.07 12.21 0.00 2.82
2951 3913 4.943705 AGATCTTGTTGTACGATTGGCAAT 59.056 37.500 13.54 13.54 0.00 3.56
2957 3919 6.403636 GGCAATGAAGATCTTGTTGTACGATT 60.404 38.462 14.00 0.00 0.00 3.34
2960 3922 4.437390 GGGCAATGAAGATCTTGTTGTACG 60.437 45.833 14.00 0.00 0.00 3.67
2979 3941 0.758310 TTCCTTGTGCACAATGGGCA 60.758 50.000 31.17 18.10 39.32 5.36
2981 3943 0.604578 CCTTCCTTGTGCACAATGGG 59.395 55.000 31.17 27.65 35.02 4.00
2982 3944 1.542915 CTCCTTCCTTGTGCACAATGG 59.457 52.381 31.17 29.36 35.02 3.16
2983 3945 2.030540 CACTCCTTCCTTGTGCACAATG 60.031 50.000 31.17 27.30 35.02 2.82
2985 3947 1.679139 CACTCCTTCCTTGTGCACAA 58.321 50.000 29.36 29.36 0.00 3.33
2986 3948 0.179020 CCACTCCTTCCTTGTGCACA 60.179 55.000 17.42 17.42 0.00 4.57
2987 3949 0.179018 ACCACTCCTTCCTTGTGCAC 60.179 55.000 10.75 10.75 0.00 4.57
2988 3950 1.347707 CTACCACTCCTTCCTTGTGCA 59.652 52.381 0.00 0.00 0.00 4.57
2989 3951 1.946283 GCTACCACTCCTTCCTTGTGC 60.946 57.143 0.00 0.00 0.00 4.57
2990 3952 1.625818 AGCTACCACTCCTTCCTTGTG 59.374 52.381 0.00 0.00 0.00 3.33
3014 3976 5.422331 TGGTCTAAGATAAGAGGGTTGTGAG 59.578 44.000 0.00 0.00 0.00 3.51
3021 3983 6.109359 CACACTTTGGTCTAAGATAAGAGGG 58.891 44.000 0.00 0.00 0.00 4.30
3028 3990 4.974645 TGGACACACTTTGGTCTAAGAT 57.025 40.909 0.00 0.00 34.49 2.40
3030 3992 5.299279 ACATTTGGACACACTTTGGTCTAAG 59.701 40.000 0.00 0.00 36.17 2.18
3036 3998 2.159128 TGCACATTTGGACACACTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
3052 4014 0.179094 AGAACCTTCGACGTTGCACA 60.179 50.000 0.00 0.00 0.00 4.57
3053 4015 0.507358 GAGAACCTTCGACGTTGCAC 59.493 55.000 0.00 0.00 0.00 4.57
3079 4041 4.864704 TTTGAAAAGCCCCATAAGTCAC 57.135 40.909 0.00 0.00 0.00 3.67
3080 4042 5.332743 AGATTTGAAAAGCCCCATAAGTCA 58.667 37.500 0.00 0.00 0.00 3.41
3089 4051 2.807676 TCCCAGAGATTTGAAAAGCCC 58.192 47.619 0.00 0.00 0.00 5.19
3132 4095 4.406326 GTGGTGAACCCCTTTTTCCTAAAA 59.594 41.667 0.00 0.00 34.29 1.52
3198 4162 2.813754 CTGAGGTGTGTGGTAATGGTTG 59.186 50.000 0.00 0.00 0.00 3.77
3222 4186 8.008844 TGAAGAAAATTGCGCAATACAAAATTC 58.991 29.630 34.05 27.74 0.00 2.17
3223 4187 7.859598 TGAAGAAAATTGCGCAATACAAAATT 58.140 26.923 34.05 20.92 0.00 1.82
3225 4189 6.478344 ACTGAAGAAAATTGCGCAATACAAAA 59.522 30.769 34.05 16.13 0.00 2.44
3226 4190 5.982516 ACTGAAGAAAATTGCGCAATACAAA 59.017 32.000 34.05 15.67 0.00 2.83
3227 4191 5.527951 ACTGAAGAAAATTGCGCAATACAA 58.472 33.333 34.05 8.89 0.00 2.41
3228 4192 5.119931 ACTGAAGAAAATTGCGCAATACA 57.880 34.783 34.05 22.83 0.00 2.29
3229 4193 6.801862 ACTTACTGAAGAAAATTGCGCAATAC 59.198 34.615 34.05 25.69 36.45 1.89
3230 4194 6.908825 ACTTACTGAAGAAAATTGCGCAATA 58.091 32.000 34.05 16.72 36.45 1.90
3231 4195 5.772521 ACTTACTGAAGAAAATTGCGCAAT 58.227 33.333 29.36 29.36 36.45 3.56
3232 4196 5.181690 ACTTACTGAAGAAAATTGCGCAA 57.818 34.783 27.24 27.24 36.45 4.85
3233 4197 4.274705 TGACTTACTGAAGAAAATTGCGCA 59.725 37.500 5.66 5.66 36.45 6.09
3234 4198 4.783242 TGACTTACTGAAGAAAATTGCGC 58.217 39.130 0.00 0.00 36.45 6.09
3236 4200 6.145535 CACCTGACTTACTGAAGAAAATTGC 58.854 40.000 0.00 0.00 36.45 3.56
3237 4201 6.486657 TCCACCTGACTTACTGAAGAAAATTG 59.513 38.462 0.00 0.00 36.45 2.32
3238 4202 6.601332 TCCACCTGACTTACTGAAGAAAATT 58.399 36.000 0.00 0.00 36.45 1.82
3239 4203 6.187727 TCCACCTGACTTACTGAAGAAAAT 57.812 37.500 0.00 0.00 36.45 1.82
3240 4204 5.623956 TCCACCTGACTTACTGAAGAAAA 57.376 39.130 0.00 0.00 36.45 2.29
3241 4205 5.623956 TTCCACCTGACTTACTGAAGAAA 57.376 39.130 0.00 0.00 36.45 2.52
3244 4208 6.878317 TGATATTCCACCTGACTTACTGAAG 58.122 40.000 0.00 0.00 38.76 3.02
3246 4210 6.667848 TCTTGATATTCCACCTGACTTACTGA 59.332 38.462 0.00 0.00 0.00 3.41
3247 4211 6.878317 TCTTGATATTCCACCTGACTTACTG 58.122 40.000 0.00 0.00 0.00 2.74
3248 4212 7.504403 CATCTTGATATTCCACCTGACTTACT 58.496 38.462 0.00 0.00 0.00 2.24
3249 4213 6.203723 GCATCTTGATATTCCACCTGACTTAC 59.796 42.308 0.00 0.00 0.00 2.34
3250 4214 6.126796 TGCATCTTGATATTCCACCTGACTTA 60.127 38.462 0.00 0.00 0.00 2.24
3251 4215 5.128919 GCATCTTGATATTCCACCTGACTT 58.871 41.667 0.00 0.00 0.00 3.01
3252 4216 4.164796 TGCATCTTGATATTCCACCTGACT 59.835 41.667 0.00 0.00 0.00 3.41
3253 4217 4.454678 TGCATCTTGATATTCCACCTGAC 58.545 43.478 0.00 0.00 0.00 3.51
3254 4218 4.776435 TGCATCTTGATATTCCACCTGA 57.224 40.909 0.00 0.00 0.00 3.86
3255 4219 5.840243 TTTGCATCTTGATATTCCACCTG 57.160 39.130 0.00 0.00 0.00 4.00
3256 4220 5.361857 CCTTTTGCATCTTGATATTCCACCT 59.638 40.000 0.00 0.00 0.00 4.00
3306 4270 6.833839 TCGGGTTACAACAAAAAGATATTCG 58.166 36.000 0.00 0.00 0.00 3.34
3329 4293 2.725815 GCGGCGCTTGTTGTGTTC 60.726 61.111 26.86 0.00 0.00 3.18
3343 4307 3.649277 CTCCCAGACGACAAGGCGG 62.649 68.421 0.00 0.00 35.12 6.13
3354 4318 0.907486 CACAGAAGGCATCTCCCAGA 59.093 55.000 0.00 0.00 35.73 3.86
3356 4320 1.565390 CCCACAGAAGGCATCTCCCA 61.565 60.000 0.00 0.00 35.73 4.37
3364 4328 2.644676 GGATACTTTCCCACAGAAGGC 58.355 52.381 0.00 0.00 38.75 4.35
3365 4329 2.420129 CCGGATACTTTCCCACAGAAGG 60.420 54.545 0.00 0.00 42.06 3.46
3371 4335 2.102084 GGAGTACCGGATACTTTCCCAC 59.898 54.545 9.46 0.00 44.64 4.61
3372 4336 2.391678 GGAGTACCGGATACTTTCCCA 58.608 52.381 9.46 0.00 44.64 4.37
3373 4337 1.690893 GGGAGTACCGGATACTTTCCC 59.309 57.143 9.46 15.46 44.64 3.97
3374 4338 2.391678 TGGGAGTACCGGATACTTTCC 58.608 52.381 9.46 16.55 44.64 3.13
3384 4348 4.540153 CCAATGCTGGGAGTACCG 57.460 61.111 0.00 0.00 44.64 4.02
3401 4365 0.469144 TTGGAGCACAGGGAAAACCC 60.469 55.000 0.00 0.00 41.63 4.11
3402 4366 1.408969 TTTGGAGCACAGGGAAAACC 58.591 50.000 0.00 0.00 40.67 3.27
3403 4367 3.751479 AATTTGGAGCACAGGGAAAAC 57.249 42.857 0.00 0.00 0.00 2.43
3404 4368 5.878406 TTTAATTTGGAGCACAGGGAAAA 57.122 34.783 0.00 0.00 0.00 2.29
3405 4369 5.878406 TTTTAATTTGGAGCACAGGGAAA 57.122 34.783 0.00 0.00 0.00 3.13
3406 4370 5.878406 TTTTTAATTTGGAGCACAGGGAA 57.122 34.783 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.