>input_sequence_51423
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------------------AATGGCAT----TGACAGCTCCTGCGGCCTCCCCTATTCCTACGACAGCGCCAGGCCC----
-AACCCTCCACCGACGCCTCCGTCTTCGCTAGGCAGCCCCGTCGCCATTGACGGC--GCGCGCGCGCAGGCGC-------
-AGCAATGACCTCCTCCTCCGCCGCCTCCTCCTCCCACCTCCATATTACCATCACC---AACGCCTCCTCCACCATCACC
ACCAACACCAACGCCACCAAATCGCAGTCGCAGTCGCAGCACCACCACTCCAGCAGCGTCTCCCCCCGCAGCGGT-----
-------GGCTCCGGCGGT------GGGGGTGGGGGTGGCACGACCAACCAGGCCTGCGCGGCGTGCAAGTACCAGCGGC
GCAAGTGCAACCCCGACTGCCCCCTCGCGCCCTACTTCCCCGCCGACCAGCAGCGCCGGTTCCTCAACGCGCACCGCCTC
TTCGGCGTCAGCAACATCCTCAAGACGCTGCGCCGCCTCAAGCCGGAGCTCTGCGACGCGGCCATGCAGACGCTCATTTA
CCAGGCGGAGATGCGCGCCATGGACCCCGTCGGAGGCTGCTGCAGCATGATCATCGACCTCGAGCACACCAGCGAGCTTC
TGTCGGCCGAGCTCGCCGCCCTGCAACAGCACCTCGACATGTGCCGCCAGGCCGCA---TCTGGCGTGGCCGGCGGGGAC
GTCATGGACGGCCCGTGCGCTGACCTCGAGGTCACCTCCTCGAACCACCAGCAGGAGCAGCTGCTCCTCCACGCCGACCA
AGATCA---GGTCGTCGACGCGCTCTACGTCGCCCAAGAAGGCGCCGACCCCGTGATGCAAAATGGCGCCGATCACGACG
ACAGCCGGCAACCGCAATATCACGGTGGACAGCAGCAGCAACAACAACAGCAGCTGTACGACTATTTCTACTACGAGGCA
ACCGGCGCCGGCAGCGATGAAGCCGGGAGAAAGCCCAGTGGCAGCGGCGTCGACATTAACGTCGACGTCATGCAGCATTT
CGATTACGACTCCAGCTGTGATCGGACTGGAGCCGAT------GATCAACTGGAGCCGATGATCTCGTCGAGCCTCGAAG
AGCACTACCAGATCGGACAGAAGGAGTACGAGATGAAGGTGGCGTCATTCGTCGATGTGTTGGACGTCAGGCCGGAGCTG
CAGGCGGTGGACGGGAACGCCGACATCGGCATCAAGGAGGAGCTTCAGGAGGAGGATCCCAAGAATAACGATGACGACAT
CGCACTACGCAAAGCAGCACACAT---GGCTGAGTCGTCACATTGCAGGCTAGGGTTAGGCTTTTAAGTACATCTCTCTA
ATGCGCCATCAACCCATTCATGTGCCTACGTTTGCTTAACTTGTTTT--------------GATAGAGAGAGGCTGTAGA
AATCATATTGTTCT------TTTTTT--CAAATCCGCCGCGGCTCTATAGT--------------CTATATTAATC----
--AACAACAATATTACAGGAAATGGGCAAAACAAAAAA------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3A_1_TraesCS3A01G492000
GGCATGTGTGCAATTCCAGGAACTTGAACTTCTAATTCAAGATCTAACCCTCACCTCAAAAGTAGACTAGTGGCAATTGT
CTAAGGGATCAAATCAATACAAAGTTTCTAGGGTTTATAGGTTGCTTGCCATTGCACCTGAGGTTATGCCAATGATCAAA
TGGATATGGAAAACTTGCTGCCAACTCAAACACAAGATCTTCTATTGGCTCCTCACAAATGAGAAGTTAAATACTGGATC
TCTCCTACAAGGAAGCATGTTTTTATTCACGATTACACTTGTGGAAATCAGAGACCATCTC-----TTCTTTCATTGCCC
CATTGCACACTTGTGCTGGTCCTACATTTGTACAATTTGGGCACCAACTATGCTAGGCATACATGATGAAGTTACACACC
TAAAGAACATGTTGAATGTGACTTTCTCACTGGAAATCATCATCTTAGTACATGTTGAACTGTTTAAGACACTACT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTCTGTAC
TACTGTTTAGTTGCTGTTTCCTTGTTT----------------------------------------------------A
AAATCAAAATTGAAGATGCCAACCG-----------------ATCATGCGCACGCGATGGTAGGTCAGCTGCTCGATCTA
TGGCTGACCAGACCGAGCGGTGTTGCTCGATCGGTCACACGGTCGCTCACTCCTTTCCGCGTGAGTGA-----CCATGCC
ATGCGTGCGTACGTGCTATCGGCAGCAACGGCACGTACGTCGATGTCATGCATGCATCCCGTT-----------------
GGTGCCGTGCACGTCAACCTACTGGCAT-------ACTTCCAAATCCAAATCTAGGATGCCAAGCTCCATGCAGCTAGCT
AGCTGCGAATTTCAGACCACAAATTGCTACCAGATCGATCCTCCT--------GATGTTGACTGGAAAGT-AGTGGCGGG
CTACTGGAATCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTGATACTTAACAAACTCTGAGCACCCCGCAACGCTCGGAGCCCAAGCCGCGACCCTTTCCGCTAT
CGATCTTG----------TGCCACAGCGTCTGT---ATAC------------GATCCCTTTTAATAGGCATCA----CCC
AGCTAACTCCTAACTAACAATGGCAT----TGACAGCTCCTGCGGCCTCCCCTATTCCTACGACAGCGCCAGGCCC----
-AACCCTCCACCGACGCCTCCGTCTTCGCTAGGCAGCCCCGTCGCCATTGACGGC--GCGCGCGCGCAGGCGC-------
-AGCAATGACCTCCTCCTCCGCCGCCTCCTCCTCCCACCTCCATATTACCATCACC---AACGCCTCCTCCACCATCACC
ACCAACACCAACGCCACCAAATCGCAGTCGCAGTCGCAGCACCACCACTCCAGCAGCGTCTCCCCCCGCAGCGGT-----
-------GGCTCCGGCGGT------GGGGGTGGGGGTGGCACGACCAACCAGGCCTGCGCGGCGTGCAAGTACCAGCGGC
GCAAGTGCAACCCCGACTGCCCCCTCGCGCCCTACTTCCCCGCCGACCAGCAGCGCCGGTTCCTCAACGCGCACCGCCTC
TTCGGCGTCAGCAACATCCTCAAGACGCTGCGCCGCCTCAAGCCGGAGCTCTGCGACGCGGCCATGCAGACGCTCATTTA
CCAGGCGGAGATGCGCGCCATGGACCCCGTCGGAGGCTGCTGCAGCATGATCATCGACCTCGAGCACACCAGCGAGCTTC
TGTCGGCCGAGCTCGCCGCCCTGCAACAGCACCTCGACATGTGCCGCCAGGCCGCA---TCTGGCGTGGCCGGCGGGGAC
GTCATGGACGGCCCGTGCGCTGACCTCGAGGTCACCTCCTCGAACCACCAGCAGGAGCAGCTGCTCCTCCACGCCGACCA
AGATCA---GGTCGTCGACGCGCTCTACGTCGCCCAAGAAGGCGCCGACCCCGTGATGCAAAATGGCGCCGATCACGACG
ACAGCCGGCAACCGCAATATCACGGTGGACAGCAGCAGCAACAACAACAGCAGCTGTACGACTATTTCTACTACGAGGCA
ACCGGCGCCGGCAGCGATGAAGCCGGGAGAAAGCCCAGTGGCAGCGGCGTCGACATTAACGTCGACGTCATGCAGCATTT
CGATTACGACTCCAGCTGTGATCGGACTGGAGCCGAT------GATCAACTGGAGCCGATGATCTCGTCGAGCCTCGAAG
AGCACTACCAGATCGGACAGAAGGAGTACGAGATGAAGGTGGCGTCATTCGTCGATGTGTTGGACGTCAGGCCGGAGCTG
CAGGCGGTGGACGGGAACGCCGACATCGGCATCAAGGAGGAGCTTCAGGAGGAGGATCCCAAGAATAACGATGACGACAT
CGCACTACGCAAAGCAGCACACAT---GGCTGAGTCGTCACATTGCAGGCTAGGGTTAGGCTTTTAAGTACATCTCTCTA
ATGCGCCATCAACCCATTCATGTGCCTACGTTTGCTTAACTTGTTTT--------------GATAGAGAGAGGCTGTAGA
AATCATATTGTTCT------TTTTTT--CAAATCCGCCGCGGCTCTATAGT--------------CTATATTAATC----
--AACAACAATATTACAGGAAATGGGCAAAACAAAAAAGAATATATAATCCACTCCTTAGAGAATTGTCCCCTCACCACA
TGATGTGGTAAGCAATCCAAACTATTAAAATAAATTGTCGACTCCATCCCGTACATCCTCAAGACGGTCGGAGTTGCCTA
CGCTGGAGTTCCACGCCGTCACTAGAACAATAAAGTTCTACCAATGCAGGTAGTCTTGAAATTACCGTTCTCAGCCGATA
CGTGTCAGCGACATCGATCCCTAGGAATCCACGAGCTGAAGAAGAAGACGATGCCGAGTTTCTCATAGCTAGACGTCTTC
CTATGTCTGCAGAATACCGAAATCGGCGCCGATACTGCCGAAACACCACTGGCATATGAATACACAACCAACTACCCCTA
CGTTGAGCATAGAGGGAGGCCAACTTGTCAAACCCAATCCTGTGATCCTGTCTCTAGATTCGACAACTCGGGTAGTCCTA
TCAATGTCTATACGCTGGACATCTCA------TTGATAGGACTACCTGATCAAGGGCGTGGTACTGCACTTCATTGCCAA
TCGTACAACAAGATCTTCATTGCCCATTGTGCACAAGGAAGGAGTGGTAGCTCACCTCACAACCCTCTTATCTTAGACCA
AAGTGTGTCCAAATGTGCAACGTCGAAGGTTCTCACAATAGTGACTTATGGGGCTTTTCAAATCTCTGGGATTAATCCAG
CTCAGACC-AATTTTTTTAGGAAA-AAGGGGTTCACCACAGATTTTCATTAAGAAAACCATAAAAAGATTCATACAGGTA
ACAACCATTACCACACACCTCAGACGAATTTTGTATTGCGCAATTTTCTTCAGTAAGTCAGGTGGAATATCAAGATGCAA
AAGGTAATTATAGAGATCGATTACAATTTCGAATATCTTTTTGTTGTAACCCGAACACAACAAGCGCCGCCTTGTCGTCT
GGGAGATGCCTTCTGTGGGAAAGTATCCGGTACTCCCAGCATTGGGGTTTTCCCTGTGCTCCAAATTAAAAAAAAACATT
ATCGAA
>chr3D_1
GGCCTATGTGCAATTCTAGGAACTTGAACTTCTAATTCAAGATCTAGCCCTCACCTCAAAAGCAGACCGGTGGCAATTGC
CTAAGGGCTTAAATCAATACAAAGTTTCTAAGGTGTATAGGTTGCTTGCCATTGCACCTGAGGTTATGCCAATAATCAAA
TGGATATGGAAAACTTGCTGCCAACTCAAACACAAGATCTTCTAGTGGCTCCTCACAAATGACATGTTATACTAGA----
TCTCCTACAAGGAAGCAGGTTTTTATTCAGGATTACACTTGTGTGTCGTGCAATATGCAGGTTCTATTCTTTCATTGCCC
CTTTGCACACTTGTCCTGGTCCTACAGTTGTACAATTTGGGCACCAAGTATGCTAGGCATACATGATGAAGTCACACACC
TAAAGAACATGTTGAATTTGCCTTTCTCACTGGAAATCATCATCTTAGTTTCTTGGGCTATCTAGACTACAAGGAAGGAC
TAGATATTCCAGCATATACCTCCAAGCCTATATACTTGCACAAGAAAGTTCCAAGAAGACCTCAAATGGACTATCTATCG
GGTATAGAGGAAGGAATACAATGGTTTTGAGGATTGAGCAAGAAGCTTTAGATAATATGTATAGCTCCTTTCAGCCTTCT
GCTATTGTTGTATAGTTGTTATCTTTTCGAAAATTATTTTTGGAGCTCCATGGAGGTCTCCTTTCGTAAAATTCAAAATT
CATCAAAACTCAAATTTTTAATTTTCAAAAAATTCTGAAAAAATTACAGATATACATGGAGGCATAATGTAAATGTGTGT
AAATTCTAAATACATTGAAATGAGGATTGTGCAAAAAATAATCGGGGCTTTGAACACACGATACTATTCATCCTCTGTAC
TACTACTATTTATTATTGTTTCTTTAAAGGAGTAGGATTTTCTATCATAATTTGCCACATAACTAGTTAAGGTTTTCAAA
AAATCAAAATTGAAGATACCAACCG-----------------AT------------------GGTCAGCTGCTCGATCGA
TGGCTGACCAGACCGAGGGGTGCTGTTCGACCGGT--CACGGTCGATCACTCCTTTTCGCGTGAGTGA-----CCATGCC
ATGCGTGCGTACGTGCTATCAGCAGCAACGGCACGTCGATGG----CATGCATGCATCCCGTT-----------------
GGTGCCGTGCACGTCCACCTACTGGGCACTGGCTCACTTCCAAATCCAAATCTAGGATGTCAAGCTCCATGCAGCTAGCT
AGCTGCGAATTTCAGACCACAAATTGCTACCAGATCGATCGACCCCCCTGCTCGATGTTGACTGAAAAGT-AGTGGCGGG
CTGCTGGAATCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTAATACTTAACAGACTCTTAGCACCCCGCAACGATCGGAGCCCAAGCCGCGACCCTTTCCGCTAT
CGATCTTG----------TGCCACAACGTCTACTACATAC------------GATCCCTTTTAATAGGCATCA----CCC
AGCTAACTCCTAACTAATAATGGCAT----TGCCAGCTCCTGCGGCCTCCCCTATTCCTACGACAGCGCCAGGCCC----
-AACCCTCCACCGACGCCTCCGTCCTCGCTAGGCAGCTCCGTCGCCATTGCCGGCGGGCGCGCGCGCAGGCGC-------
-AGCAATGACCTCCTCCTCCGCCGCCTCCTCCTCCCACCTCCATATTACCATCACC---AACGCCTCCTCCACCATCACC
ACCAACACCAACGCCACCAAATCGCAGTCGCAGTCGCAGCACCACCACTCGAGCAGCGTCTCCCCCCGCAGCGGC-----
-------GGCTCCGGCGGT------GGGGGTGGGGGTGGCACGACCAACCAGGCCTGCGCGGCGTGCAAGTACCAGCGGC
GCAAGTGCAACCCCGACTGCCCCCTGGCGCCCTACTTCCCCGCCGACCAGCAGCGCCGGTTCCTCAACGCGCACCGCCTC
TTCGGCGTCAGCAACATCCTCAAGACGCTGCGCCGCCTCAAGCCGGAGCTCTGCGACGCGGCCATGCAGACGCTCATCTA
CCAGGCGGAGATGCGCGCCATGGACCCCGTCGGAGGCTGCTGCCGCATGATCATCGACCTCGAGCACACCAGCGAGCTCC
TGTCGGCCGAGCTCGCCGCCCTGCAACAGCACCTCGACATGTGCCGCCAGGCCGCA---TCCGGCGTGGCCGGCGGGGAC
GTCATGGACGGCCCGTGCGCTGACCTGGAGGTCACCTCCTCGAACCACCAGCAGGAGCAGCTGCTCCTCCACGCCGACCA
AGATCATCAGGTCGTCGACGCGATCTACGTCGCCCAAGAAGGCGCCGACCCCGTGATACAAAATGGCGCCGATCACGACG
ACAGCCGGCAACCGCAATATCACGGTGGACAGCAGCAGCAACAACAACAGCAGCTGTACGACTATTTCTACTACGAGGCA
ACCGGTGCCGGCAGCGATGAGGCCGGGAGAAAGCCCAGCGGCAGCGGCGTCGACATTAACGTCGACGTCATGCAGCATTT
CGATTACGACTCCAGCTGCGAGGTTGATGATCATCACAAGGTGGATCAACTGGAGCCGATGATCTCGTCCAGCCTCGAAG
AGCACTACCAGATCGGACAGAAGGAGTACGAGATGAAGGTGGCGTCATTCGTCGATGTGTTGGACGTCAGGCCGGAGCTG
CAGGCGGTGGACGGGAACGCCGACATCGGCATCAAGGAGGAGCTTCAGGAGGAGGATCCCAAGAATAACGACGAGGACAT
CGCACTACGTAAAGCAGCACACAT---GGCTGAGTCGTCACATTGCAGGCTAGGGTTAGGCTTTTAAGTACACCTCTCTA
ATGCGGCATCAACCCATTCATGTGCCTACGTTTGCTTAACTTTTTTTGATATAGAGAGAGAGAGAGAGAGAAGCTGTAGA
AAGTATAATGTTAT------TCTTTTTTCAAATCAGTAGCTGTTCTATATTAATCAACAGTAACACTATATTAATCAACA
GTAACACCAGTATTACAGGAAATCGCCAAAACAAAAAAGAATATAGAATCCACTCCTTAGAGAATTGTCCT---------
-----------------------------------------CTCCATCCCGTACATGCCCAAGACGGCCGGAGTTGCCTC
CGCTGGAGTTCCACACCGTCGCTAGAACAATAAAGTTCTACCAATGCAGGTTGTCGAGAAATTACCGTTCTCTGCAGATA
AGTGTTGGCGACGTCGATCCCTAAGAATCCAGGACCCGAA-----AGACGATGCCGAGTTGCTCATTCCTACACGTCTAC
CTATGTC-------TACCAAAATTGGCGCC------GCCGAAGCACCACTGGCGATGAAC-ACACAACCAACTGCCCCTA
CGTTGAGCATAGAGGGAGGCAAAATTGTTCACCAGTCT----------TGTCTCTATATTTGACGGCTCGGGTAGTGTTA
TCAATGAAACATAAATGTCCAGCACATGCACGTTGATAGGGCTACCCGAGCAAGGGTGTGGTACTGCACTCAGTTGCCGA
TGGTACAACAAGATCTTCATCGTGTA------ACAAGGAAGCAGTGGTAGCTCACTTCACAATCCTCTTGTTTTAGATCA
AAGTGTGTCCAAACATGCAACGTCTAAGGTTCTCACAATA--GACTTATGCGGCTTTTCAAATCTCTGGGATTAGTCCAG
CTCAAACAAAAATTATTTAGGAAAAAAGGGGTTTACCACCGATTTTCATTAAGAAAACCATAAAAAGATTCATACAGGTA
ATAACCATTACCACACACCTCAGACACAACACAACAATCAGTGAGTTGTG----------GGTGGAATATCAAGATGCAA
AAGGTGATTATAGAGATCGATTACAATTTTGAATATCTTTT-GTTGTAACCCCAACACAACAATCGTCGCCTTGTCGGCG
GGGAGATATCTTCT------------------------------------------------------------------
------
>chr3B_517
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---------TTGAAGATACCAACCGGTGATCATGCGCACGCGAT------------------GGTCAGCTGCTCGATCGA
TGGCTAACCTGACCGAGCGTTGGTGCTCGACCGGT--CACGGTCGCTCACTCCTTTTCGCGTGAGTGACCATGCCATGCC
ATGCGTGCGTACGTGCTATCAGCAGCAACGGCACGTCGGTGG----CATGTGCATGGATGCGTCCATGCCATTATTCCAC
GGTGCCGTGCACGTCAACCCACTCACGA-TGGCTCACTTTCAAATCCAAATCTAGGATGTCAAGCTCCATG--------T
AGCTGCGAATTTCAGACCACAAATTGCTACCAGATCCAT-----CCCGTGATCGATGTTGACTGACTGAAAAGTGGCGAG
CTGCTGGAATCCATCCGCTAGCACACGAGCCTTGGTGAACCACACTTGTCTTTTCTTCTAGCGTCTGCCTTGCACCTTGC
ACTCGTTTTCTCCTTCTCTTTATCTGAATCCGAGAATTTGACACGTACTCGAGTACTAGTAGAGAGTGCATGCACATCAA
TATTATTTCTTTTCTCACTTCTCAACTAGGATTTGGAGGGCTCACTTCCAAATCTAAGAGACCCGTACGTCAAGCTCCAT
GCATGCAGCTGCGAATTTCAGACCACAAATTGCTACTACCAGATCGATCCAGCTGATATTGACTGACTGAAAAGTGGCTA
CTGGAATCCATCCGCTAATACCCAACAAACTCTGAACACCCCGCAACGCTCGGAGCCGAAGCCGCGACCCTTTCTTCCAC
TGTCGATCGATCTCCTGCTGCCACAACACACGATCGAGTGGATCGATGGATGGATCCCTTTTAATAGGCATGCATCGCCC
AGCAAACTGGTAACTAATAATGGCATATATTGCCAGCTCCTGCGGCCTCCCCTATTCCTACGACAGCGCCAGGCCCAACG
TAACCCTCCACCGACGCCCCCGTCCTCGCTAGGCAGCTCCGTCGCCATTGCCGCCGGGCGCGCGCGCAGGCAGGCGCAGC
TAGCAATGACCTCCTCCTCCGCCGCCTCCTCCTCCCACCTCCATATTACCATCACCAACAACGCCTCCTCCACCATCACC
ACCAACACCAACAATAACACCAAGTCG---------------CACCACTCCAGCAGCGTCTCCCCTCGCAGCGGCAGCGG
CGGCTCCGGCTCCGGCGGTGGGGGTGGGGGTGGGGGTGGCACGACCAACCAGGCCTGCGCGGCGTGCAAGTACCAGCGGC
GCAAGTGCAACCCCGACTGCCCCCTCGCGCCCTACTTCCCCGCCGACCAGCAGCGCCGGTTCCTCAACGCGCACCGCCTC
TTCGGCGTCAGCAACATCCTCAAGACGCTGCGCCGGCTCAAGCCGGAGCTGTGCGACTCGGCCATGCAGACGCTCATCTA
CCAGGCGGAGATGCGCGCCATGGACCCCGTCGGCGGCTGCTGCCGCATGATCATCGACCTCGAGCACACCAGCGAGCTCC
TCTCGGCCGAGCTCGCCGCCCTGCAACAGCACCTCGACATGTGCCGCCAGGCCGCCGCGTCCGGCGTGGCCGGCGGGGAC
GTCATGGACGGCCCGTGCGCTGACCTGGAGGTCACCTCCTCGAACCACCAGCAGGAGCAGCTGCTCCTCCACGCCGACCA
AGATCATCATCAG------GCGCTCTACATCGGCCAAGAAGGCGCCGACCCCGTGATACAGAACGGCGCCGATCACGACG
ACAGCCGGCAACCGCAGTATCACGGCGGA---CAGCAGCACCAGCAACAGCAGCTGTACGACTATTTCTACTACGAGGCA
ACCGGTGCCGGCAGCGATGAGGCCGGGAGAAAGCCCAGTGGCAGCGGCGTCGACATTAACGTCGACGTCATGCAGCATTT
CGATTACGACTCCAGCTGCGAGGTTGATGATCATCACAAGGTGGATCAACTGGAGCCGATGATCTCGTCCAGCCTCGACG
AGCACTACCAGATCGGACAGAAGGAGTACGAGATGAAGGTGGCGTCGTTCGTCGATGTGTTGGACGTCAGGCCGGAGCTG
CAGGCGGTGGACGGGAACGCGGACATCGGCGTCAAGGAGGAGCTTCAGGAGGAGGATCCCAAGAATAACGA---CGACAT
CGCACTACGTAAAGCAGCACACATGGCGGCTGAGTCATCACATTGCAGGCTAGGGTTAGGCTTTTAAGTACATCTCTCTA
ATGCGGCATCAACCCATTCATGT--------TTGCTTAACTTGTTTTGATAGAGAGAGAGAGAGAG------GCTGTAGA
AAGTATAATATTGTTCTTTCTTTTTT--CAAATGAGTCGCGGCTCTATAGT--------------CTATATTAATC----
--AACACCAGTATTACAGGAAATCGCCCAAACAAAAAGAAT---------------------------------------
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------
>SNPs
---S-S----------S-----------------------------S---------------S----SS----------S
-------S-S--------------------S---S--------------------------------------S------
--------------------------------------------S-----------------S-S----S-SSSSSSSSS
-----------------S-----------S-------------SSSSSSSS-SSSSSSSSS-------------------
-S------------S-----------S--------------------S------------------------S-------
-----------------S--S----------------------------SSS-SSS-SSS-S-SS-SS---SSSSS----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----SS-SSS-SSSSS-S-SSS-S-SS-----------------------------------------------------
-----------------S--------------------------SSSSSSSSSSSSSSSSSS----------------S-
----------------------S-------S----SS-------------------S-----------------------
--------------------S---------------SS--S-SSSS----------------------------------
--------------------------SS-------------------------------S--------------------
----------------------------------------SS--S-------------------S---------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------------------------S------S-----------------------------------------------
-----------------S--------------S-----------------------------------------------
------------------------S------------S------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-------------------------------------------S----------------------------------S-
-------------------------------------------------------------S------------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-----S--------------S-----------------------------------------------------------
------------------S--SSSSSS--SSSSSS-S--------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------S----------------------------------------------------------------------
-----S---------------------------------------------------------S-------S--------
--SS---S----S---------------------S-S-------------------------------------------
------S--S-------------S-S-------------------S------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S--------S-----------S
--------------S-----S------------------------------S---SS---------------S--S----
S----SS-----S----------S-------S--S-S---SSSSS---------------S-----SS---S------S-
-------SSSSSSS----S----S------SSSSSS------S----------SSSSS-SS------------S------
--------------------S--S----SS-S-SSSS-SSSSSSSSSS--------S---S---SS----------SS--
------SSSSSSSSS--SS--S-S----------------S-----S--S------S-------------SSS-----S-
-S------------------S-SSS-SSSSSS---------S-------------S------S------S-S-----S--
-------------SS---------S---------------SS--------S-----------------------S-----
----S--S---S--S------------------S-----S----------------------------------------
-S-----------------------SS-SSSSSSSSSS-SSSSSS--S-SSSSSSSSSSS--------------------
-----S-----------------------S-----------S----------S----------S--S----------S-S
-------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_1697
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-----------------------------------------------------------------------------CGG
GCTACTGGAATCCTCTG---------------------------------------------------------------
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------
>reverse_2950
--------------------------------------------------------------------------------
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---------------------------------------------------------------------GAGCCTCGAAG
AGCACTACC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------
>forward_2912
--------------------------------------------------------------------------------
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------------CAGCTGTGATCGGACTGGAG------------------------------------------------
--------------------------------------------------------------------------------
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------
>reverse_3949
--------------------------------------------------------------------------------
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----------------------------GTGCACAAGGAAGGAGTGGT--------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
