Multiple sequence alignment - TraesCS3A01G488500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G488500 chr3A 100.000 3250 0 0 1 3250 716262835 716266084 0.000000e+00 6002
1 TraesCS3A01G488500 chr3D 90.401 2719 167 39 1 2648 581824849 581822154 0.000000e+00 3489
2 TraesCS3A01G488500 chr3D 81.385 231 36 5 2046 2270 581790754 581790525 7.160000e-42 182
3 TraesCS3A01G488500 chr3B 94.247 1269 53 9 1011 2267 776226678 776227938 0.000000e+00 1921
4 TraesCS3A01G488500 chr3B 86.564 841 57 17 1 804 776225646 776226467 0.000000e+00 876
5 TraesCS3A01G488500 chr3B 93.069 202 10 2 830 1027 776226454 776226655 3.170000e-75 292
6 TraesCS3A01G488500 chr3B 86.256 211 18 7 2327 2537 776227930 776228129 5.460000e-53 219
7 TraesCS3A01G488500 chr3B 88.750 160 16 2 2527 2684 776228330 776228489 9.200000e-46 195
8 TraesCS3A01G488500 chr3B 91.525 118 5 2 2750 2863 256548157 256548273 1.210000e-34 158
9 TraesCS3A01G488500 chr7D 85.383 862 60 24 1 826 67549954 67550785 0.000000e+00 833
10 TraesCS3A01G488500 chr5D 85.041 849 61 26 1 814 543759679 543758862 0.000000e+00 804
11 TraesCS3A01G488500 chr6D 84.688 849 65 28 1 814 429637715 429636897 0.000000e+00 787
12 TraesCS3A01G488500 chr1D 84.688 849 64 26 1 814 429377463 429376646 0.000000e+00 787
13 TraesCS3A01G488500 chr1D 91.944 360 28 1 2860 3219 51992536 51992894 1.350000e-138 503
14 TraesCS3A01G488500 chr2D 84.339 862 69 25 1 826 54821861 54822692 0.000000e+00 784
15 TraesCS3A01G488500 chr2D 91.969 386 31 0 2863 3248 287696308 287695923 2.850000e-150 542
16 TraesCS3A01G488500 chr2D 88.643 361 26 5 1 350 442839041 442838685 3.000000e-115 425
17 TraesCS3A01G488500 chr1A 87.846 469 44 5 354 814 80807471 80807008 3.690000e-149 538
18 TraesCS3A01G488500 chr1A 91.453 117 6 1 2751 2863 470400991 470400875 1.210000e-34 158
19 TraesCS3A01G488500 chr5A 87.660 470 44 5 354 814 565598176 565597712 4.770000e-148 534
20 TraesCS3A01G488500 chr5A 90.793 391 35 1 2860 3249 122987345 122987735 3.720000e-144 521
21 TraesCS3A01G488500 chr5A 89.922 387 32 5 2863 3248 670399964 670400344 2.910000e-135 492
22 TraesCS3A01G488500 chr4A 91.451 386 32 1 2863 3248 69275705 69275321 2.220000e-146 529
23 TraesCS3A01G488500 chr4A 90.674 386 35 1 2863 3248 379468370 379467986 2.240000e-141 512
24 TraesCS3A01G488500 chr4A 85.900 461 40 14 378 814 619882985 619882526 4.910000e-128 468
25 TraesCS3A01G488500 chr4A 87.812 361 29 5 1 350 619883338 619882982 3.020000e-110 409
26 TraesCS3A01G488500 chr7A 91.003 389 34 1 2863 3250 549564828 549564440 1.030000e-144 523
27 TraesCS3A01G488500 chr7A 86.798 356 32 3 3 347 99547126 99547477 1.830000e-102 383
28 TraesCS3A01G488500 chr7B 90.769 390 34 2 2860 3248 126029771 126029383 1.340000e-143 520
29 TraesCS3A01G488500 chr7B 87.372 293 20 5 1 282 493170355 493170641 1.450000e-83 320
30 TraesCS3A01G488500 chr6A 89.031 392 34 5 2859 3248 509578336 509578720 8.160000e-131 477
31 TraesCS3A01G488500 chr6B 90.000 370 28 3 453 814 91483255 91482887 1.370000e-128 470
32 TraesCS3A01G488500 chr6B 87.812 361 29 5 1 350 91483691 91483335 3.020000e-110 409
33 TraesCS3A01G488500 chr5B 84.492 187 11 12 378 547 592167589 592167404 5.580000e-38 169
34 TraesCS3A01G488500 chr2B 93.137 102 7 0 1049 1150 789982245 789982346 2.020000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G488500 chr3A 716262835 716266084 3249 False 6002.0 6002 100.0000 1 3250 1 chr3A.!!$F1 3249
1 TraesCS3A01G488500 chr3D 581822154 581824849 2695 True 3489.0 3489 90.4010 1 2648 1 chr3D.!!$R2 2647
2 TraesCS3A01G488500 chr3B 776225646 776228489 2843 False 700.6 1921 89.7772 1 2684 5 chr3B.!!$F2 2683
3 TraesCS3A01G488500 chr7D 67549954 67550785 831 False 833.0 833 85.3830 1 826 1 chr7D.!!$F1 825
4 TraesCS3A01G488500 chr5D 543758862 543759679 817 True 804.0 804 85.0410 1 814 1 chr5D.!!$R1 813
5 TraesCS3A01G488500 chr6D 429636897 429637715 818 True 787.0 787 84.6880 1 814 1 chr6D.!!$R1 813
6 TraesCS3A01G488500 chr1D 429376646 429377463 817 True 787.0 787 84.6880 1 814 1 chr1D.!!$R1 813
7 TraesCS3A01G488500 chr2D 54821861 54822692 831 False 784.0 784 84.3390 1 826 1 chr2D.!!$F1 825
8 TraesCS3A01G488500 chr4A 619882526 619883338 812 True 438.5 468 86.8560 1 814 2 chr4A.!!$R3 813
9 TraesCS3A01G488500 chr6B 91482887 91483691 804 True 439.5 470 88.9060 1 814 2 chr6B.!!$R1 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 381 0.03601 CTTTGTCTGACGCCCAGGAT 60.036 55.0 2.98 0.0 43.12 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2450 0.179037 ATCATGCATCCTCACCACCG 60.179 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.338249 CAGGTTGGTTCATGTCCTACTG 58.662 50.000 17.18 13.87 32.84 2.74
132 140 1.180456 TGCCACCTTGCAATGTCCTG 61.180 55.000 4.20 0.00 38.56 3.86
140 148 0.179004 TGCAATGTCCTGGTTCGGTT 60.179 50.000 0.00 0.00 0.00 4.44
198 206 4.065789 GGTGACTAGCAAAGCTGTAACTT 58.934 43.478 1.04 0.00 40.10 2.66
204 212 6.464222 ACTAGCAAAGCTGTAACTTCATACA 58.536 36.000 1.04 0.00 40.10 2.29
222 230 2.279517 GGTGTCGATGCTAGCCCG 60.280 66.667 13.29 15.70 0.00 6.13
223 231 2.494918 GTGTCGATGCTAGCCCGT 59.505 61.111 20.91 5.45 0.00 5.28
224 232 1.153628 GTGTCGATGCTAGCCCGTT 60.154 57.895 20.91 2.02 0.00 4.44
225 233 0.101759 GTGTCGATGCTAGCCCGTTA 59.898 55.000 20.91 11.71 0.00 3.18
226 234 0.384309 TGTCGATGCTAGCCCGTTAG 59.616 55.000 20.91 5.29 0.00 2.34
227 235 0.940047 GTCGATGCTAGCCCGTTAGC 60.940 60.000 20.91 3.82 44.97 3.09
352 377 1.070786 GGTCTTTGTCTGACGCCCA 59.929 57.895 2.98 0.00 35.45 5.36
355 380 1.118965 TCTTTGTCTGACGCCCAGGA 61.119 55.000 2.98 0.00 43.12 3.86
356 381 0.036010 CTTTGTCTGACGCCCAGGAT 60.036 55.000 2.98 0.00 43.12 3.24
357 382 0.036388 TTTGTCTGACGCCCAGGATC 60.036 55.000 2.98 0.00 43.12 3.36
405 449 7.148722 GCACGAGCCTTATTTCTTCAGATATAC 60.149 40.741 0.00 0.00 33.58 1.47
406 450 8.085296 CACGAGCCTTATTTCTTCAGATATACT 58.915 37.037 0.00 0.00 0.00 2.12
407 451 8.643324 ACGAGCCTTATTTCTTCAGATATACTT 58.357 33.333 0.00 0.00 0.00 2.24
521 579 3.632604 AGTGTAGGTATCCTGTGATGTCG 59.367 47.826 0.00 0.00 34.61 4.35
577 636 3.503363 TGATTTTGTCCTGTGTCATGCTC 59.497 43.478 0.00 0.00 0.00 4.26
641 700 1.801178 GTTTTGGACGCTCTCTCCTTG 59.199 52.381 0.00 0.00 0.00 3.61
644 703 0.251386 TGGACGCTCTCTCCTTGAGT 60.251 55.000 0.00 0.00 43.13 3.41
721 787 4.838423 TCAGGTACTTCATCTCCAAGTTCA 59.162 41.667 0.00 0.00 34.60 3.18
726 792 9.053410 AGGTACTTCATCTCCAAGTTCACTTGT 62.053 40.741 16.65 0.00 44.30 3.16
752 818 1.916181 ACCCTCCAACAACTATCCCAG 59.084 52.381 0.00 0.00 0.00 4.45
777 843 3.629398 GGCTATGAACTGAAAGATGGGTG 59.371 47.826 0.00 0.00 37.43 4.61
934 1000 9.799106 TTCCTTTTGAAATCTCTTATCTCTGTT 57.201 29.630 0.00 0.00 0.00 3.16
998 1068 5.296151 TGAGGATTTCATTTATCGAGGCT 57.704 39.130 0.00 0.00 0.00 4.58
1009 1079 4.537135 TTATCGAGGCTTATGATCCACC 57.463 45.455 0.00 0.00 0.00 4.61
1095 1206 9.712305 CCTGAATACGATCTTCCTATATTTTGT 57.288 33.333 0.00 0.00 0.00 2.83
1144 1255 5.061064 CAGAGTATCGTTGTCTTGTAAGTGC 59.939 44.000 0.00 0.00 42.67 4.40
1172 1284 9.970553 ATGATATGTATGCCATTCAAGACTTAT 57.029 29.630 0.00 0.00 34.86 1.73
1181 1293 8.450578 TGCCATTCAAGACTTATTTACTATGG 57.549 34.615 0.00 0.00 33.62 2.74
1306 1418 6.715347 AAATACTACAGGAATTTGATGCCC 57.285 37.500 0.00 0.00 0.00 5.36
1312 1424 3.962718 ACAGGAATTTGATGCCCCTTATG 59.037 43.478 0.00 0.00 0.00 1.90
1357 1470 4.279420 GGATCTTATCCTTCACCCAAATGC 59.721 45.833 0.00 0.00 46.19 3.56
1372 1485 3.515104 CCAAATGCATTACCCCAGTCTTT 59.485 43.478 13.39 0.00 0.00 2.52
1527 1640 3.669536 TGAACGCAACCATCATGTTCTA 58.330 40.909 5.19 0.00 39.61 2.10
1540 1653 7.082602 CCATCATGTTCTATATTCAGCTTTGC 58.917 38.462 0.00 0.00 0.00 3.68
1597 1711 3.996150 ATTTCTGAACTGTTGTGCCAG 57.004 42.857 0.00 0.00 38.45 4.85
1642 1758 5.766670 TGCTCTGTTTTCTCATGTTTCTGAT 59.233 36.000 0.00 0.00 0.00 2.90
1685 1801 2.693069 ACGGATCAAGCAACTGAAGAG 58.307 47.619 0.00 0.00 0.00 2.85
1781 1897 7.588143 TTGTATTTTTCATAAAACCCATGCG 57.412 32.000 0.00 0.00 36.15 4.73
1876 1997 3.302365 TCATTTGTTAAAGCAGCTGCC 57.698 42.857 34.39 19.29 43.38 4.85
1916 2037 0.249398 GTCGTGCCTTGTCTATGGGT 59.751 55.000 0.00 0.00 0.00 4.51
1980 2101 1.821136 CCATGCCAAGGTTTCTCTTCC 59.179 52.381 0.00 0.00 0.00 3.46
1981 2102 2.556114 CCATGCCAAGGTTTCTCTTCCT 60.556 50.000 0.00 0.00 35.34 3.36
1996 2117 7.761038 TTCTCTTCCTGCGATATTCACTATA 57.239 36.000 0.00 0.00 0.00 1.31
1997 2118 7.946381 TCTCTTCCTGCGATATTCACTATAT 57.054 36.000 0.00 0.00 31.98 0.86
1998 2119 8.354711 TCTCTTCCTGCGATATTCACTATATT 57.645 34.615 0.00 0.00 29.39 1.28
1999 2120 8.807118 TCTCTTCCTGCGATATTCACTATATTT 58.193 33.333 0.00 0.00 29.39 1.40
2002 2123 9.862371 CTTCCTGCGATATTCACTATATTTAGT 57.138 33.333 0.00 0.00 39.30 2.24
2072 2193 6.435430 TTTGATATTCAGGATTTGGTGACG 57.565 37.500 0.00 0.00 0.00 4.35
2094 2215 2.036089 GAGTTCCTGTTCGAAGGAGTGT 59.964 50.000 5.99 0.00 46.99 3.55
2267 2388 5.538433 AGGATGAGATCTTTAGCTGTAGGAC 59.462 44.000 0.00 0.00 0.00 3.85
2272 2393 2.821437 TCTTTAGCTGTAGGACCTGCT 58.179 47.619 11.19 10.32 41.69 4.24
2304 2426 1.253100 GGGTTTTCCTGAATTCGCCA 58.747 50.000 0.04 0.00 40.46 5.69
2343 2477 4.247258 GTGAGGATGCATGATGAGATCTC 58.753 47.826 16.21 16.21 0.00 2.75
2347 2481 4.004314 GGATGCATGATGAGATCTCTTGG 58.996 47.826 22.95 9.91 0.00 3.61
2352 2486 5.364735 TGCATGATGAGATCTCTTGGAGTAA 59.635 40.000 22.95 0.87 0.00 2.24
2428 2562 0.244994 GACGCTCTTGCTTCTCAGGA 59.755 55.000 0.00 0.00 35.01 3.86
2433 2567 3.543665 GCTCTTGCTTCTCAGGATTCAT 58.456 45.455 0.00 0.00 36.03 2.57
2459 2593 0.179282 CGTTCTTCGTTACACGCTGC 60.179 55.000 0.00 0.00 42.21 5.25
2476 2610 0.179468 TGCCCGGGCTACTTTGTATC 59.821 55.000 43.34 13.24 42.51 2.24
2514 2649 3.510360 TGAAGGGTCTGTGTAGCTTAGAC 59.490 47.826 0.00 1.36 39.98 2.59
2517 2652 4.097418 AGGGTCTGTGTAGCTTAGACAAT 58.903 43.478 16.66 6.52 41.93 2.71
2518 2653 4.081420 AGGGTCTGTGTAGCTTAGACAATG 60.081 45.833 16.66 3.56 41.93 2.82
2524 2659 6.015772 TCTGTGTAGCTTAGACAATGTGTGTA 60.016 38.462 0.00 0.00 41.96 2.90
2545 2891 7.548427 TGTGTAAATATTTGATTGGGTGCAATG 59.452 33.333 11.05 0.00 0.00 2.82
2660 3008 0.254178 ATCAGGCTGCCGTCAGAAAT 59.746 50.000 13.96 0.00 42.95 2.17
2678 3026 6.376864 TCAGAAATAGGCAAATCCGATGAAAA 59.623 34.615 0.00 0.00 40.77 2.29
2697 3045 3.915437 AAAAATGTGTAAGGAGTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
2698 3046 2.851263 AAATGTGTAAGGAGTGGCGA 57.149 45.000 0.00 0.00 0.00 5.54
2699 3047 2.851263 AATGTGTAAGGAGTGGCGAA 57.149 45.000 0.00 0.00 0.00 4.70
2700 3048 2.386661 ATGTGTAAGGAGTGGCGAAG 57.613 50.000 0.00 0.00 0.00 3.79
2713 3061 3.578456 CGAAGCGAGGGCAATGTT 58.422 55.556 0.00 0.00 43.41 2.71
2714 3062 2.762360 CGAAGCGAGGGCAATGTTA 58.238 52.632 0.00 0.00 43.41 2.41
2715 3063 0.652592 CGAAGCGAGGGCAATGTTAG 59.347 55.000 0.00 0.00 43.41 2.34
2716 3064 1.739035 CGAAGCGAGGGCAATGTTAGA 60.739 52.381 0.00 0.00 43.41 2.10
2717 3065 2.356135 GAAGCGAGGGCAATGTTAGAA 58.644 47.619 0.00 0.00 43.41 2.10
2718 3066 2.489938 AGCGAGGGCAATGTTAGAAA 57.510 45.000 0.00 0.00 43.41 2.52
2719 3067 2.359900 AGCGAGGGCAATGTTAGAAAG 58.640 47.619 0.00 0.00 43.41 2.62
2720 3068 2.084546 GCGAGGGCAATGTTAGAAAGT 58.915 47.619 0.00 0.00 39.62 2.66
2721 3069 2.488153 GCGAGGGCAATGTTAGAAAGTT 59.512 45.455 0.00 0.00 39.62 2.66
2722 3070 3.670627 GCGAGGGCAATGTTAGAAAGTTG 60.671 47.826 0.00 0.00 39.62 3.16
2723 3071 3.751175 CGAGGGCAATGTTAGAAAGTTGA 59.249 43.478 0.00 0.00 0.00 3.18
2724 3072 4.215399 CGAGGGCAATGTTAGAAAGTTGAA 59.785 41.667 0.00 0.00 0.00 2.69
2725 3073 5.278266 CGAGGGCAATGTTAGAAAGTTGAAA 60.278 40.000 0.00 0.00 0.00 2.69
2726 3074 6.478512 AGGGCAATGTTAGAAAGTTGAAAA 57.521 33.333 0.00 0.00 0.00 2.29
2727 3075 6.883744 AGGGCAATGTTAGAAAGTTGAAAAA 58.116 32.000 0.00 0.00 0.00 1.94
2747 3095 5.473796 AAAACGTGTAACATGACGAAAGT 57.526 34.783 11.17 0.00 43.96 2.66
2748 3096 5.473796 AAACGTGTAACATGACGAAAGTT 57.526 34.783 11.17 2.80 41.27 2.66
2749 3097 4.446857 ACGTGTAACATGACGAAAGTTG 57.553 40.909 11.17 0.00 41.27 3.16
2750 3098 3.246699 ACGTGTAACATGACGAAAGTTGG 59.753 43.478 11.17 0.00 41.27 3.77
2751 3099 3.363575 CGTGTAACATGACGAAAGTTGGG 60.364 47.826 0.00 0.00 41.27 4.12
2752 3100 3.058501 GTGTAACATGACGAAAGTTGGGG 60.059 47.826 0.00 0.00 40.90 4.96
2753 3101 5.277400 GTGTAACATGACGAAAGTTGGGGA 61.277 45.833 0.00 0.00 40.90 4.81
2754 3102 7.039267 GTGTAACATGACGAAAGTTGGGGAG 62.039 48.000 0.00 0.00 40.90 4.30
2758 3106 1.004918 ACGAAAGTTGGGGAGCTCG 60.005 57.895 7.83 0.00 46.40 5.03
2759 3107 1.004918 CGAAAGTTGGGGAGCTCGT 60.005 57.895 7.83 0.00 0.00 4.18
2760 3108 0.245539 CGAAAGTTGGGGAGCTCGTA 59.754 55.000 7.83 0.00 0.00 3.43
2761 3109 1.134788 CGAAAGTTGGGGAGCTCGTAT 60.135 52.381 7.83 0.00 0.00 3.06
2762 3110 2.677037 CGAAAGTTGGGGAGCTCGTATT 60.677 50.000 7.83 0.00 0.00 1.89
2763 3111 2.693267 AAGTTGGGGAGCTCGTATTC 57.307 50.000 7.83 0.00 0.00 1.75
2764 3112 1.568504 AGTTGGGGAGCTCGTATTCA 58.431 50.000 7.83 0.00 0.00 2.57
2765 3113 1.482593 AGTTGGGGAGCTCGTATTCAG 59.517 52.381 7.83 0.00 0.00 3.02
2766 3114 1.207329 GTTGGGGAGCTCGTATTCAGT 59.793 52.381 7.83 0.00 0.00 3.41
2767 3115 1.568504 TGGGGAGCTCGTATTCAGTT 58.431 50.000 7.83 0.00 0.00 3.16
2768 3116 1.480954 TGGGGAGCTCGTATTCAGTTC 59.519 52.381 7.83 0.00 0.00 3.01
2769 3117 1.536284 GGGGAGCTCGTATTCAGTTCG 60.536 57.143 7.83 0.00 0.00 3.95
2770 3118 1.536284 GGGAGCTCGTATTCAGTTCGG 60.536 57.143 7.83 0.00 0.00 4.30
2771 3119 1.201343 GAGCTCGTATTCAGTTCGGC 58.799 55.000 0.00 0.00 0.00 5.54
2772 3120 0.525668 AGCTCGTATTCAGTTCGGCG 60.526 55.000 0.00 0.00 0.00 6.46
2773 3121 1.917921 CTCGTATTCAGTTCGGCGC 59.082 57.895 0.00 0.00 0.00 6.53
2774 3122 1.480219 CTCGTATTCAGTTCGGCGCC 61.480 60.000 19.07 19.07 0.00 6.53
2775 3123 2.856346 CGTATTCAGTTCGGCGCCG 61.856 63.158 42.13 42.13 41.35 6.46
2776 3124 2.888534 TATTCAGTTCGGCGCCGC 60.889 61.111 42.78 29.76 39.59 6.53
2795 3143 3.919973 GAACGTCAACCGGCGCCTA 62.920 63.158 26.68 1.08 42.24 3.93
2796 3144 4.729856 ACGTCAACCGGCGCCTAC 62.730 66.667 26.68 13.15 42.24 3.18
2797 3145 4.728102 CGTCAACCGGCGCCTACA 62.728 66.667 26.68 0.00 0.00 2.74
2798 3146 2.813908 GTCAACCGGCGCCTACAG 60.814 66.667 26.68 12.93 0.00 2.74
2799 3147 4.752879 TCAACCGGCGCCTACAGC 62.753 66.667 26.68 0.00 38.52 4.40
2801 3149 4.323477 AACCGGCGCCTACAGCAA 62.323 61.111 26.68 0.00 44.04 3.91
2802 3150 3.835790 AACCGGCGCCTACAGCAAA 62.836 57.895 26.68 0.00 44.04 3.68
2803 3151 3.499737 CCGGCGCCTACAGCAAAG 61.500 66.667 26.68 4.88 44.04 2.77
2804 3152 4.166011 CGGCGCCTACAGCAAAGC 62.166 66.667 26.68 0.00 44.04 3.51
2805 3153 3.815396 GGCGCCTACAGCAAAGCC 61.815 66.667 22.15 0.00 44.04 4.35
2806 3154 3.055719 GCGCCTACAGCAAAGCCA 61.056 61.111 0.00 0.00 44.04 4.75
2807 3155 2.625823 GCGCCTACAGCAAAGCCAA 61.626 57.895 0.00 0.00 44.04 4.52
2808 3156 1.503542 CGCCTACAGCAAAGCCAAG 59.496 57.895 0.00 0.00 44.04 3.61
2809 3157 1.237285 CGCCTACAGCAAAGCCAAGT 61.237 55.000 0.00 0.00 44.04 3.16
2810 3158 0.242017 GCCTACAGCAAAGCCAAGTG 59.758 55.000 0.00 0.00 42.97 3.16
2811 3159 0.883833 CCTACAGCAAAGCCAAGTGG 59.116 55.000 0.00 0.00 38.53 4.00
2812 3160 0.883833 CTACAGCAAAGCCAAGTGGG 59.116 55.000 0.00 0.00 40.85 4.61
2832 3180 3.443045 GGCCCACGAATGCACCAG 61.443 66.667 0.00 0.00 0.00 4.00
2833 3181 4.120331 GCCCACGAATGCACCAGC 62.120 66.667 0.00 0.00 42.57 4.85
2834 3182 3.803082 CCCACGAATGCACCAGCG 61.803 66.667 0.00 0.00 46.23 5.18
2835 3183 4.465512 CCACGAATGCACCAGCGC 62.466 66.667 0.00 0.00 46.23 5.92
2836 3184 4.799473 CACGAATGCACCAGCGCG 62.799 66.667 0.00 0.00 46.23 6.86
2839 3187 3.430862 GAATGCACCAGCGCGGAA 61.431 61.111 22.10 9.53 46.23 4.30
2840 3188 3.386867 GAATGCACCAGCGCGGAAG 62.387 63.158 22.10 15.09 46.23 3.46
2853 3201 2.612200 CGGAAGCTGTTTTCGTGGA 58.388 52.632 0.00 0.00 0.00 4.02
2854 3202 0.941542 CGGAAGCTGTTTTCGTGGAA 59.058 50.000 0.00 0.00 0.00 3.53
2855 3203 1.332375 CGGAAGCTGTTTTCGTGGAAA 59.668 47.619 0.00 0.00 0.00 3.13
2856 3204 2.223386 CGGAAGCTGTTTTCGTGGAAAA 60.223 45.455 0.00 0.00 38.90 2.29
2857 3205 3.732471 CGGAAGCTGTTTTCGTGGAAAAA 60.732 43.478 5.20 0.00 42.09 1.94
2858 3206 3.796717 GGAAGCTGTTTTCGTGGAAAAAG 59.203 43.478 5.20 6.80 42.09 2.27
2859 3207 4.421058 GAAGCTGTTTTCGTGGAAAAAGT 58.579 39.130 5.20 0.00 42.09 2.66
2860 3208 4.450082 AGCTGTTTTCGTGGAAAAAGTT 57.550 36.364 5.20 2.33 42.09 2.66
2861 3209 4.816392 AGCTGTTTTCGTGGAAAAAGTTT 58.184 34.783 5.20 0.00 42.09 2.66
2862 3210 4.862574 AGCTGTTTTCGTGGAAAAAGTTTC 59.137 37.500 5.20 0.00 42.09 2.78
2863 3211 4.862574 GCTGTTTTCGTGGAAAAAGTTTCT 59.137 37.500 5.20 0.00 42.09 2.52
2864 3212 6.031471 GCTGTTTTCGTGGAAAAAGTTTCTA 58.969 36.000 5.20 0.00 42.09 2.10
2865 3213 6.528774 GCTGTTTTCGTGGAAAAAGTTTCTAA 59.471 34.615 5.20 0.00 42.09 2.10
2866 3214 7.062488 GCTGTTTTCGTGGAAAAAGTTTCTAAA 59.938 33.333 5.20 0.00 42.09 1.85
2867 3215 8.813643 TGTTTTCGTGGAAAAAGTTTCTAAAA 57.186 26.923 5.20 2.05 42.09 1.52
2868 3216 9.425577 TGTTTTCGTGGAAAAAGTTTCTAAAAT 57.574 25.926 5.20 0.00 42.09 1.82
2869 3217 9.895894 GTTTTCGTGGAAAAAGTTTCTAAAATC 57.104 29.630 5.20 0.00 42.09 2.17
2870 3218 9.863845 TTTTCGTGGAAAAAGTTTCTAAAATCT 57.136 25.926 1.31 0.00 38.37 2.40
2880 3228 8.865590 AAAGTTTCTAAAATCTAAAAAGCGCA 57.134 26.923 11.47 0.00 0.00 6.09
2881 3229 9.476202 AAAGTTTCTAAAATCTAAAAAGCGCAT 57.524 25.926 11.47 0.00 0.00 4.73
2883 3231 9.556030 AGTTTCTAAAATCTAAAAAGCGCATAC 57.444 29.630 11.47 0.00 0.00 2.39
2884 3232 8.513090 GTTTCTAAAATCTAAAAAGCGCATACG 58.487 33.333 11.47 0.00 44.07 3.06
2898 3246 3.997276 CGCATACGCACTATTTTGTTGA 58.003 40.909 0.00 0.00 38.40 3.18
2899 3247 4.399112 CGCATACGCACTATTTTGTTGAA 58.601 39.130 0.00 0.00 38.40 2.69
2900 3248 5.027737 CGCATACGCACTATTTTGTTGAAT 58.972 37.500 0.00 0.00 38.40 2.57
2901 3249 5.053091 CGCATACGCACTATTTTGTTGAATG 60.053 40.000 0.00 0.00 38.40 2.67
2902 3250 5.229887 GCATACGCACTATTTTGTTGAATGG 59.770 40.000 0.00 0.00 38.36 3.16
2903 3251 6.550843 CATACGCACTATTTTGTTGAATGGA 58.449 36.000 0.00 0.00 0.00 3.41
2904 3252 5.046910 ACGCACTATTTTGTTGAATGGAG 57.953 39.130 0.00 0.00 0.00 3.86
2905 3253 3.853671 CGCACTATTTTGTTGAATGGAGC 59.146 43.478 0.00 0.00 33.21 4.70
2906 3254 3.853671 GCACTATTTTGTTGAATGGAGCG 59.146 43.478 0.00 0.00 28.43 5.03
2907 3255 4.414852 CACTATTTTGTTGAATGGAGCGG 58.585 43.478 0.00 0.00 0.00 5.52
2908 3256 2.368655 ATTTTGTTGAATGGAGCGGC 57.631 45.000 0.00 0.00 0.00 6.53
2909 3257 0.316841 TTTTGTTGAATGGAGCGGCC 59.683 50.000 0.00 0.00 37.10 6.13
2910 3258 1.861542 TTTGTTGAATGGAGCGGCCG 61.862 55.000 24.05 24.05 40.66 6.13
2911 3259 4.179579 GTTGAATGGAGCGGCCGC 62.180 66.667 42.34 42.34 40.66 6.53
2923 3271 4.036804 GGCCGCGTTTCACATGCA 62.037 61.111 4.92 0.00 37.23 3.96
2924 3272 2.179018 GCCGCGTTTCACATGCAT 59.821 55.556 4.92 0.00 37.23 3.96
2925 3273 2.153945 GCCGCGTTTCACATGCATG 61.154 57.895 25.09 25.09 37.23 4.06
2926 3274 1.209898 CCGCGTTTCACATGCATGT 59.790 52.632 26.61 26.61 42.84 3.21
2938 3286 4.540359 ACATGCATGTGGCTGTTAATTT 57.460 36.364 30.92 1.38 45.15 1.82
2939 3287 4.897140 ACATGCATGTGGCTGTTAATTTT 58.103 34.783 30.92 0.90 45.15 1.82
2940 3288 5.307204 ACATGCATGTGGCTGTTAATTTTT 58.693 33.333 30.92 0.20 45.15 1.94
2960 3308 4.944962 TTTCGTCTTCTAATGCATGTGG 57.055 40.909 0.00 0.00 0.00 4.17
2961 3309 2.279741 TCGTCTTCTAATGCATGTGGC 58.720 47.619 0.00 0.00 45.13 5.01
2962 3310 2.093500 TCGTCTTCTAATGCATGTGGCT 60.093 45.455 0.00 0.00 45.15 4.75
2963 3311 2.031314 CGTCTTCTAATGCATGTGGCTG 59.969 50.000 0.00 0.00 45.15 4.85
2964 3312 3.012518 GTCTTCTAATGCATGTGGCTGT 58.987 45.455 0.00 0.00 45.15 4.40
2965 3313 3.441572 GTCTTCTAATGCATGTGGCTGTT 59.558 43.478 0.00 0.00 45.15 3.16
2966 3314 4.635765 GTCTTCTAATGCATGTGGCTGTTA 59.364 41.667 0.00 0.00 45.15 2.41
2967 3315 4.877823 TCTTCTAATGCATGTGGCTGTTAG 59.122 41.667 0.00 0.00 45.15 2.34
2968 3316 2.945008 TCTAATGCATGTGGCTGTTAGC 59.055 45.455 0.00 0.00 45.15 3.09
2969 3317 1.548081 AATGCATGTGGCTGTTAGCA 58.452 45.000 0.00 0.00 44.75 3.49
2970 3318 1.771565 ATGCATGTGGCTGTTAGCAT 58.228 45.000 0.00 0.00 44.75 3.79
2971 3319 1.548081 TGCATGTGGCTGTTAGCATT 58.452 45.000 2.99 0.00 44.75 3.56
2972 3320 2.720915 TGCATGTGGCTGTTAGCATTA 58.279 42.857 2.99 0.00 44.75 1.90
2973 3321 3.087781 TGCATGTGGCTGTTAGCATTAA 58.912 40.909 2.99 0.00 44.75 1.40
2974 3322 3.509184 TGCATGTGGCTGTTAGCATTAAA 59.491 39.130 2.99 0.00 44.75 1.52
2975 3323 3.859386 GCATGTGGCTGTTAGCATTAAAC 59.141 43.478 2.99 0.00 44.75 2.01
2976 3324 3.822594 TGTGGCTGTTAGCATTAAACG 57.177 42.857 2.99 0.00 44.75 3.60
2977 3325 3.142951 TGTGGCTGTTAGCATTAAACGT 58.857 40.909 2.99 0.00 44.75 3.99
2978 3326 3.058570 TGTGGCTGTTAGCATTAAACGTG 60.059 43.478 2.99 0.00 44.75 4.49
2979 3327 3.058501 GTGGCTGTTAGCATTAAACGTGT 60.059 43.478 2.99 0.00 44.75 4.49
2980 3328 3.566322 TGGCTGTTAGCATTAAACGTGTT 59.434 39.130 2.99 0.00 44.75 3.32
2981 3329 4.156182 GGCTGTTAGCATTAAACGTGTTC 58.844 43.478 2.99 0.00 44.75 3.18
2982 3330 4.319911 GGCTGTTAGCATTAAACGTGTTCA 60.320 41.667 2.99 0.00 44.75 3.18
2983 3331 4.611366 GCTGTTAGCATTAAACGTGTTCAC 59.389 41.667 0.00 0.00 41.89 3.18
2984 3332 5.736486 TGTTAGCATTAAACGTGTTCACA 57.264 34.783 0.00 0.00 0.00 3.58
2985 3333 5.503498 TGTTAGCATTAAACGTGTTCACAC 58.497 37.500 0.00 0.00 43.15 3.82
2986 3334 5.294799 TGTTAGCATTAAACGTGTTCACACT 59.705 36.000 8.41 0.00 44.34 3.55
2987 3335 4.209452 AGCATTAAACGTGTTCACACTG 57.791 40.909 8.41 4.79 44.34 3.66
2988 3336 3.874543 AGCATTAAACGTGTTCACACTGA 59.125 39.130 8.41 0.00 44.34 3.41
2989 3337 4.515191 AGCATTAAACGTGTTCACACTGAT 59.485 37.500 8.41 0.00 44.34 2.90
2990 3338 5.008613 AGCATTAAACGTGTTCACACTGATT 59.991 36.000 8.41 5.83 44.34 2.57
2991 3339 6.203915 AGCATTAAACGTGTTCACACTGATTA 59.796 34.615 8.41 5.03 44.34 1.75
2992 3340 6.302313 GCATTAAACGTGTTCACACTGATTAC 59.698 38.462 8.41 0.00 44.34 1.89
2993 3341 7.572759 CATTAAACGTGTTCACACTGATTACT 58.427 34.615 8.41 0.75 44.34 2.24
2994 3342 5.652744 AAACGTGTTCACACTGATTACTC 57.347 39.130 8.41 0.00 44.34 2.59
2995 3343 3.650139 ACGTGTTCACACTGATTACTCC 58.350 45.455 8.41 0.00 44.34 3.85
2996 3344 3.069016 ACGTGTTCACACTGATTACTCCA 59.931 43.478 8.41 0.00 44.34 3.86
2997 3345 4.245660 CGTGTTCACACTGATTACTCCAT 58.754 43.478 8.41 0.00 44.34 3.41
2998 3346 4.690748 CGTGTTCACACTGATTACTCCATT 59.309 41.667 8.41 0.00 44.34 3.16
2999 3347 5.179368 CGTGTTCACACTGATTACTCCATTT 59.821 40.000 8.41 0.00 44.34 2.32
3000 3348 6.603095 GTGTTCACACTGATTACTCCATTTC 58.397 40.000 2.65 0.00 43.25 2.17
3001 3349 5.408299 TGTTCACACTGATTACTCCATTTCG 59.592 40.000 0.00 0.00 0.00 3.46
3002 3350 5.400066 TCACACTGATTACTCCATTTCGA 57.600 39.130 0.00 0.00 0.00 3.71
3003 3351 5.789521 TCACACTGATTACTCCATTTCGAA 58.210 37.500 0.00 0.00 0.00 3.71
3004 3352 5.637810 TCACACTGATTACTCCATTTCGAAC 59.362 40.000 0.00 0.00 0.00 3.95
3005 3353 5.639506 CACACTGATTACTCCATTTCGAACT 59.360 40.000 0.00 0.00 0.00 3.01
3006 3354 5.639506 ACACTGATTACTCCATTTCGAACTG 59.360 40.000 8.45 8.45 0.00 3.16
3007 3355 5.869344 CACTGATTACTCCATTTCGAACTGA 59.131 40.000 16.33 3.96 0.00 3.41
3008 3356 6.368791 CACTGATTACTCCATTTCGAACTGAA 59.631 38.462 16.33 3.80 33.85 3.02
3009 3357 6.369065 ACTGATTACTCCATTTCGAACTGAAC 59.631 38.462 16.33 0.00 35.97 3.18
3010 3358 5.347635 TGATTACTCCATTTCGAACTGAACG 59.652 40.000 16.33 7.00 35.97 3.95
3011 3359 2.413837 ACTCCATTTCGAACTGAACGG 58.586 47.619 16.33 0.53 35.97 4.44
3012 3360 2.036733 ACTCCATTTCGAACTGAACGGA 59.963 45.455 16.33 4.84 36.50 4.69
3013 3361 3.262420 CTCCATTTCGAACTGAACGGAT 58.738 45.455 16.33 0.00 37.62 4.18
3014 3362 3.259064 TCCATTTCGAACTGAACGGATC 58.741 45.455 16.33 0.00 34.81 3.36
3015 3363 2.351726 CCATTTCGAACTGAACGGATCC 59.648 50.000 16.33 0.00 35.97 3.36
3016 3364 2.823924 TTTCGAACTGAACGGATCCA 57.176 45.000 13.41 0.00 35.97 3.41
3017 3365 2.074547 TTCGAACTGAACGGATCCAC 57.925 50.000 13.41 3.08 0.00 4.02
3018 3366 0.109458 TCGAACTGAACGGATCCACG 60.109 55.000 13.41 0.60 40.31 4.94
3019 3367 1.683790 CGAACTGAACGGATCCACGC 61.684 60.000 13.41 0.00 37.37 5.34
3020 3368 0.669318 GAACTGAACGGATCCACGCA 60.669 55.000 13.41 4.93 37.37 5.24
3021 3369 0.036388 AACTGAACGGATCCACGCAT 60.036 50.000 13.41 0.00 37.37 4.73
3022 3370 0.821517 ACTGAACGGATCCACGCATA 59.178 50.000 13.41 0.00 37.37 3.14
3023 3371 1.412710 ACTGAACGGATCCACGCATAT 59.587 47.619 13.41 0.00 37.37 1.78
3024 3372 2.158957 ACTGAACGGATCCACGCATATT 60.159 45.455 13.41 0.00 37.37 1.28
3025 3373 2.476619 CTGAACGGATCCACGCATATTC 59.523 50.000 13.41 4.17 37.37 1.75
3026 3374 2.159028 TGAACGGATCCACGCATATTCA 60.159 45.455 13.41 6.60 37.37 2.57
3027 3375 2.839486 ACGGATCCACGCATATTCAT 57.161 45.000 13.41 0.00 37.37 2.57
3028 3376 3.126001 ACGGATCCACGCATATTCATT 57.874 42.857 13.41 0.00 37.37 2.57
3029 3377 3.476552 ACGGATCCACGCATATTCATTT 58.523 40.909 13.41 0.00 37.37 2.32
3030 3378 3.498397 ACGGATCCACGCATATTCATTTC 59.502 43.478 13.41 0.00 37.37 2.17
3031 3379 3.498018 CGGATCCACGCATATTCATTTCA 59.502 43.478 13.41 0.00 0.00 2.69
3032 3380 4.377738 CGGATCCACGCATATTCATTTCAG 60.378 45.833 13.41 0.00 0.00 3.02
3033 3381 4.756642 GGATCCACGCATATTCATTTCAGA 59.243 41.667 6.95 0.00 0.00 3.27
3034 3382 5.106791 GGATCCACGCATATTCATTTCAGAG 60.107 44.000 6.95 0.00 0.00 3.35
3035 3383 4.769688 TCCACGCATATTCATTTCAGAGT 58.230 39.130 0.00 0.00 0.00 3.24
3036 3384 5.185454 TCCACGCATATTCATTTCAGAGTT 58.815 37.500 0.00 0.00 0.00 3.01
3037 3385 5.647658 TCCACGCATATTCATTTCAGAGTTT 59.352 36.000 0.00 0.00 0.00 2.66
3038 3386 6.150976 TCCACGCATATTCATTTCAGAGTTTT 59.849 34.615 0.00 0.00 0.00 2.43
3039 3387 7.335673 TCCACGCATATTCATTTCAGAGTTTTA 59.664 33.333 0.00 0.00 0.00 1.52
3040 3388 7.967854 CCACGCATATTCATTTCAGAGTTTTAA 59.032 33.333 0.00 0.00 0.00 1.52
3041 3389 9.340695 CACGCATATTCATTTCAGAGTTTTAAA 57.659 29.630 0.00 0.00 0.00 1.52
3069 3417 8.736751 TTAAAAAGTCATATCTTTCAAACCGC 57.263 30.769 0.00 0.00 36.75 5.68
3070 3418 4.600012 AAGTCATATCTTTCAAACCGCG 57.400 40.909 0.00 0.00 0.00 6.46
3071 3419 2.351726 AGTCATATCTTTCAAACCGCGC 59.648 45.455 0.00 0.00 0.00 6.86
3072 3420 1.326245 TCATATCTTTCAAACCGCGCG 59.674 47.619 25.67 25.67 0.00 6.86
3073 3421 1.062002 CATATCTTTCAAACCGCGCGT 59.938 47.619 29.95 14.24 0.00 6.01
3074 3422 0.717224 TATCTTTCAAACCGCGCGTC 59.283 50.000 29.95 0.00 0.00 5.19
3075 3423 2.222953 ATCTTTCAAACCGCGCGTCG 62.223 55.000 29.95 17.12 38.08 5.12
3084 3432 2.878991 CGCGCGTCGGAATTCAGA 60.879 61.111 24.19 5.92 33.78 3.27
3085 3433 2.230940 CGCGCGTCGGAATTCAGAT 61.231 57.895 24.19 0.00 33.78 2.90
3086 3434 1.560292 GCGCGTCGGAATTCAGATC 59.440 57.895 11.54 6.23 0.00 2.75
3087 3435 0.872021 GCGCGTCGGAATTCAGATCT 60.872 55.000 11.54 0.00 0.00 2.75
3088 3436 0.848942 CGCGTCGGAATTCAGATCTG 59.151 55.000 17.07 17.07 0.00 2.90
3089 3437 1.799181 CGCGTCGGAATTCAGATCTGT 60.799 52.381 21.92 3.10 0.00 3.41
3090 3438 2.271800 GCGTCGGAATTCAGATCTGTT 58.728 47.619 21.92 10.33 0.00 3.16
3091 3439 2.673368 GCGTCGGAATTCAGATCTGTTT 59.327 45.455 21.92 16.21 0.00 2.83
3092 3440 3.125316 GCGTCGGAATTCAGATCTGTTTT 59.875 43.478 21.92 15.87 0.00 2.43
3093 3441 4.725169 GCGTCGGAATTCAGATCTGTTTTC 60.725 45.833 21.92 21.85 0.00 2.29
3094 3442 4.388773 CGTCGGAATTCAGATCTGTTTTCA 59.611 41.667 26.67 14.36 0.00 2.69
3095 3443 5.622378 GTCGGAATTCAGATCTGTTTTCAC 58.378 41.667 26.67 19.04 0.00 3.18
3096 3444 5.409826 GTCGGAATTCAGATCTGTTTTCACT 59.590 40.000 26.67 9.77 0.00 3.41
3097 3445 5.409520 TCGGAATTCAGATCTGTTTTCACTG 59.590 40.000 26.67 19.90 0.00 3.66
3098 3446 5.397326 GGAATTCAGATCTGTTTTCACTGC 58.603 41.667 26.67 14.74 0.00 4.40
3099 3447 5.182760 GGAATTCAGATCTGTTTTCACTGCT 59.817 40.000 26.67 4.89 0.00 4.24
3100 3448 5.624344 ATTCAGATCTGTTTTCACTGCTG 57.376 39.130 21.92 0.00 0.00 4.41
3101 3449 3.405831 TCAGATCTGTTTTCACTGCTGG 58.594 45.455 21.92 0.00 0.00 4.85
3102 3450 3.071457 TCAGATCTGTTTTCACTGCTGGA 59.929 43.478 21.92 0.00 0.00 3.86
3103 3451 3.817084 CAGATCTGTTTTCACTGCTGGAA 59.183 43.478 14.95 0.00 0.00 3.53
3104 3452 3.817647 AGATCTGTTTTCACTGCTGGAAC 59.182 43.478 0.00 0.00 0.00 3.62
3105 3453 3.281727 TCTGTTTTCACTGCTGGAACT 57.718 42.857 0.00 0.00 0.00 3.01
3106 3454 3.206150 TCTGTTTTCACTGCTGGAACTC 58.794 45.455 0.00 0.00 0.00 3.01
3107 3455 3.118261 TCTGTTTTCACTGCTGGAACTCT 60.118 43.478 0.00 0.00 0.00 3.24
3108 3456 3.620488 TGTTTTCACTGCTGGAACTCTT 58.380 40.909 0.00 0.00 0.00 2.85
3109 3457 3.378112 TGTTTTCACTGCTGGAACTCTTG 59.622 43.478 0.00 0.00 0.00 3.02
3110 3458 1.597742 TTCACTGCTGGAACTCTTGC 58.402 50.000 0.00 0.00 0.00 4.01
3111 3459 0.601046 TCACTGCTGGAACTCTTGCG 60.601 55.000 0.00 0.00 0.00 4.85
3112 3460 0.601046 CACTGCTGGAACTCTTGCGA 60.601 55.000 0.00 0.00 0.00 5.10
3113 3461 0.601311 ACTGCTGGAACTCTTGCGAC 60.601 55.000 0.00 0.00 0.00 5.19
3114 3462 1.621301 CTGCTGGAACTCTTGCGACG 61.621 60.000 0.00 0.00 0.00 5.12
3115 3463 1.372997 GCTGGAACTCTTGCGACGA 60.373 57.895 0.00 0.00 0.00 4.20
3116 3464 1.347817 GCTGGAACTCTTGCGACGAG 61.348 60.000 0.00 0.00 34.70 4.18
3117 3465 0.241213 CTGGAACTCTTGCGACGAGA 59.759 55.000 0.00 0.00 32.87 4.04
3118 3466 0.888619 TGGAACTCTTGCGACGAGAT 59.111 50.000 0.00 0.00 32.87 2.75
3119 3467 1.135373 TGGAACTCTTGCGACGAGATC 60.135 52.381 0.00 5.28 32.87 2.75
3120 3468 1.133407 GGAACTCTTGCGACGAGATCT 59.867 52.381 0.00 0.00 32.73 2.75
3121 3469 2.416162 GGAACTCTTGCGACGAGATCTT 60.416 50.000 0.00 0.00 32.73 2.40
3122 3470 3.246619 GAACTCTTGCGACGAGATCTTT 58.753 45.455 0.00 0.00 30.40 2.52
3123 3471 2.600731 ACTCTTGCGACGAGATCTTTG 58.399 47.619 0.00 0.00 32.87 2.77
3124 3472 2.229062 ACTCTTGCGACGAGATCTTTGA 59.771 45.455 0.00 0.00 32.87 2.69
3125 3473 3.245797 CTCTTGCGACGAGATCTTTGAA 58.754 45.455 0.00 0.00 0.00 2.69
3126 3474 3.649073 TCTTGCGACGAGATCTTTGAAA 58.351 40.909 0.00 0.00 0.00 2.69
3127 3475 3.428870 TCTTGCGACGAGATCTTTGAAAC 59.571 43.478 0.00 0.00 0.00 2.78
3128 3476 3.026630 TGCGACGAGATCTTTGAAACT 57.973 42.857 0.00 0.00 0.00 2.66
3129 3477 4.168922 TGCGACGAGATCTTTGAAACTA 57.831 40.909 0.00 0.00 0.00 2.24
3130 3478 4.166523 TGCGACGAGATCTTTGAAACTAG 58.833 43.478 0.00 0.00 0.00 2.57
3131 3479 4.082949 TGCGACGAGATCTTTGAAACTAGA 60.083 41.667 0.00 0.00 0.00 2.43
3132 3480 5.038033 GCGACGAGATCTTTGAAACTAGAT 58.962 41.667 0.00 0.00 33.92 1.98
3133 3481 5.172411 GCGACGAGATCTTTGAAACTAGATC 59.828 44.000 0.00 0.00 44.54 2.75
3134 3482 5.683743 CGACGAGATCTTTGAAACTAGATCC 59.316 44.000 0.00 1.33 45.05 3.36
3135 3483 6.531503 ACGAGATCTTTGAAACTAGATCCA 57.468 37.500 0.00 0.00 45.05 3.41
3136 3484 6.568869 ACGAGATCTTTGAAACTAGATCCAG 58.431 40.000 0.00 5.93 45.05 3.86
3137 3485 5.461737 CGAGATCTTTGAAACTAGATCCAGC 59.538 44.000 0.00 0.03 45.05 4.85
3138 3486 6.305272 AGATCTTTGAAACTAGATCCAGCA 57.695 37.500 0.00 0.00 45.05 4.41
3139 3487 6.897986 AGATCTTTGAAACTAGATCCAGCAT 58.102 36.000 0.00 0.00 45.05 3.79
3140 3488 6.766944 AGATCTTTGAAACTAGATCCAGCATG 59.233 38.462 0.00 0.00 45.05 4.06
3141 3489 6.053632 TCTTTGAAACTAGATCCAGCATGA 57.946 37.500 0.00 0.00 39.69 3.07
3142 3490 6.111382 TCTTTGAAACTAGATCCAGCATGAG 58.889 40.000 0.00 0.00 39.69 2.90
3143 3491 3.801698 TGAAACTAGATCCAGCATGAGC 58.198 45.455 0.00 0.00 39.69 4.26
3144 3492 3.198417 TGAAACTAGATCCAGCATGAGCA 59.802 43.478 0.00 0.00 45.49 4.26
3145 3493 4.141551 TGAAACTAGATCCAGCATGAGCAT 60.142 41.667 0.00 0.00 45.49 3.79
3146 3494 3.404224 ACTAGATCCAGCATGAGCATG 57.596 47.619 6.11 6.11 45.49 4.06
3147 3495 2.704596 ACTAGATCCAGCATGAGCATGT 59.295 45.455 11.68 0.00 45.49 3.21
3148 3496 2.730934 AGATCCAGCATGAGCATGTT 57.269 45.000 11.68 3.28 45.49 2.71
3149 3497 3.014304 AGATCCAGCATGAGCATGTTT 57.986 42.857 11.68 0.00 45.49 2.83
3150 3498 2.950309 AGATCCAGCATGAGCATGTTTC 59.050 45.455 11.68 1.77 45.49 2.78
3151 3499 1.089112 TCCAGCATGAGCATGTTTCG 58.911 50.000 11.68 0.00 45.49 3.46
3152 3500 1.089112 CCAGCATGAGCATGTTTCGA 58.911 50.000 11.68 0.00 45.49 3.71
3153 3501 1.202110 CCAGCATGAGCATGTTTCGAC 60.202 52.381 11.68 0.00 45.49 4.20
3154 3502 1.465777 CAGCATGAGCATGTTTCGACA 59.534 47.619 11.68 0.00 45.49 4.35
3155 3503 2.095617 CAGCATGAGCATGTTTCGACAA 60.096 45.455 11.68 0.00 45.49 3.18
3156 3504 2.553602 AGCATGAGCATGTTTCGACAAA 59.446 40.909 11.68 0.00 45.49 2.83
3157 3505 3.004629 AGCATGAGCATGTTTCGACAAAA 59.995 39.130 11.68 0.00 45.49 2.44
3158 3506 3.735240 GCATGAGCATGTTTCGACAAAAA 59.265 39.130 11.68 0.00 40.80 1.94
3181 3529 5.616488 AATTTTGATGCCAACTTTGATGC 57.384 34.783 0.00 0.00 30.88 3.91
3182 3530 4.339872 TTTTGATGCCAACTTTGATGCT 57.660 36.364 0.00 0.00 30.88 3.79
3183 3531 5.465532 TTTTGATGCCAACTTTGATGCTA 57.534 34.783 0.00 0.00 30.88 3.49
3184 3532 5.664294 TTTGATGCCAACTTTGATGCTAT 57.336 34.783 0.00 0.00 30.88 2.97
3185 3533 6.772360 TTTGATGCCAACTTTGATGCTATA 57.228 33.333 0.00 0.00 30.88 1.31
3186 3534 6.964807 TTGATGCCAACTTTGATGCTATAT 57.035 33.333 0.00 0.00 0.00 0.86
3187 3535 6.321848 TGATGCCAACTTTGATGCTATATG 57.678 37.500 0.00 0.00 0.00 1.78
3188 3536 5.242171 TGATGCCAACTTTGATGCTATATGG 59.758 40.000 0.00 0.00 0.00 2.74
3189 3537 4.535781 TGCCAACTTTGATGCTATATGGT 58.464 39.130 0.00 0.00 0.00 3.55
3190 3538 4.338964 TGCCAACTTTGATGCTATATGGTG 59.661 41.667 0.00 0.00 0.00 4.17
3191 3539 4.794003 GCCAACTTTGATGCTATATGGTGC 60.794 45.833 0.00 0.00 0.00 5.01
3192 3540 4.338964 CCAACTTTGATGCTATATGGTGCA 59.661 41.667 0.00 0.00 43.67 4.57
3193 3541 5.163530 CCAACTTTGATGCTATATGGTGCAA 60.164 40.000 0.00 0.00 42.74 4.08
3194 3542 5.505173 ACTTTGATGCTATATGGTGCAAC 57.495 39.130 0.00 0.00 42.74 4.17
3195 3543 5.195940 ACTTTGATGCTATATGGTGCAACT 58.804 37.500 2.04 0.00 42.74 3.16
3196 3544 5.653769 ACTTTGATGCTATATGGTGCAACTT 59.346 36.000 2.04 0.00 42.74 2.66
3197 3545 6.153340 ACTTTGATGCTATATGGTGCAACTTT 59.847 34.615 2.04 0.00 42.74 2.66
3198 3546 7.339212 ACTTTGATGCTATATGGTGCAACTTTA 59.661 33.333 2.04 0.00 42.74 1.85
3199 3547 6.866010 TGATGCTATATGGTGCAACTTTAG 57.134 37.500 2.04 2.59 42.74 1.85
3200 3548 6.356556 TGATGCTATATGGTGCAACTTTAGT 58.643 36.000 2.04 0.00 42.74 2.24
3201 3549 7.505258 TGATGCTATATGGTGCAACTTTAGTA 58.495 34.615 2.04 1.43 42.74 1.82
3202 3550 7.441157 TGATGCTATATGGTGCAACTTTAGTAC 59.559 37.037 2.04 0.00 42.74 2.73
3203 3551 6.884832 TGCTATATGGTGCAACTTTAGTACT 58.115 36.000 2.04 0.00 36.15 2.73
3204 3552 6.761242 TGCTATATGGTGCAACTTTAGTACTG 59.239 38.462 5.39 0.00 36.15 2.74
3205 3553 6.761714 GCTATATGGTGCAACTTTAGTACTGT 59.238 38.462 5.39 0.00 36.74 3.55
3206 3554 7.924412 GCTATATGGTGCAACTTTAGTACTGTA 59.076 37.037 5.39 0.00 36.74 2.74
3207 3555 9.982651 CTATATGGTGCAACTTTAGTACTGTAT 57.017 33.333 5.39 0.00 36.74 2.29
3209 3557 6.795098 TGGTGCAACTTTAGTACTGTATTG 57.205 37.500 5.39 6.18 36.74 1.90
3210 3558 6.292923 TGGTGCAACTTTAGTACTGTATTGT 58.707 36.000 5.39 0.00 36.74 2.71
3211 3559 6.203915 TGGTGCAACTTTAGTACTGTATTGTG 59.796 38.462 5.39 0.00 36.74 3.33
3212 3560 6.077838 GTGCAACTTTAGTACTGTATTGTGC 58.922 40.000 5.39 8.72 0.00 4.57
3213 3561 5.760743 TGCAACTTTAGTACTGTATTGTGCA 59.239 36.000 5.39 11.14 0.00 4.57
3214 3562 6.261158 TGCAACTTTAGTACTGTATTGTGCAA 59.739 34.615 5.39 0.00 0.00 4.08
3215 3563 6.577427 GCAACTTTAGTACTGTATTGTGCAAC 59.423 38.462 5.39 0.00 37.35 4.17
3216 3564 7.519970 GCAACTTTAGTACTGTATTGTGCAACT 60.520 37.037 5.39 0.00 38.04 3.16
3217 3565 8.342634 CAACTTTAGTACTGTATTGTGCAACTT 58.657 33.333 5.39 0.00 38.04 2.66
3218 3566 8.446599 ACTTTAGTACTGTATTGTGCAACTTT 57.553 30.769 5.39 0.00 38.04 2.66
3219 3567 9.550406 ACTTTAGTACTGTATTGTGCAACTTTA 57.450 29.630 5.39 0.00 38.04 1.85
3232 3580 8.888332 TTGTGCAACTTTAATAATACATCGTG 57.112 30.769 0.00 0.00 38.04 4.35
3233 3581 6.964370 TGTGCAACTTTAATAATACATCGTGC 59.036 34.615 0.00 0.00 38.04 5.34
3234 3582 6.964370 GTGCAACTTTAATAATACATCGTGCA 59.036 34.615 0.00 0.00 0.00 4.57
3235 3583 7.483375 GTGCAACTTTAATAATACATCGTGCAA 59.517 33.333 0.00 0.00 0.00 4.08
3236 3584 7.483375 TGCAACTTTAATAATACATCGTGCAAC 59.517 33.333 0.00 0.00 0.00 4.17
3237 3585 7.696453 GCAACTTTAATAATACATCGTGCAACT 59.304 33.333 0.00 0.00 31.75 3.16
3238 3586 9.554724 CAACTTTAATAATACATCGTGCAACTT 57.445 29.630 0.00 0.00 31.75 2.66
3243 3591 9.900710 TTAATAATACATCGTGCAACTTTTTGT 57.099 25.926 0.00 0.00 34.90 2.83
3245 3593 9.900710 AATAATACATCGTGCAACTTTTTGTAA 57.099 25.926 0.00 0.00 34.90 2.41
3246 3594 9.900710 ATAATACATCGTGCAACTTTTTGTAAA 57.099 25.926 0.00 0.00 34.90 2.01
3247 3595 8.635877 AATACATCGTGCAACTTTTTGTAAAA 57.364 26.923 0.00 0.00 34.90 1.52
3248 3596 8.810652 ATACATCGTGCAACTTTTTGTAAAAT 57.189 26.923 0.00 0.00 34.90 1.82
3249 3597 7.160633 ACATCGTGCAACTTTTTGTAAAATC 57.839 32.000 0.00 0.00 34.90 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.746991 CGAGCAAGGGAAGGGAAGC 60.747 63.158 0.00 0.00 0.00 3.86
132 140 4.072088 CGCAGCGTGAACCGAACC 62.072 66.667 6.65 0.00 39.56 3.62
198 206 2.034685 GCTAGCATCGACACCTGTATGA 59.965 50.000 10.63 0.00 0.00 2.15
204 212 2.786495 CGGGCTAGCATCGACACCT 61.786 63.158 18.24 0.00 0.00 4.00
211 219 0.319986 GGAGCTAACGGGCTAGCATC 60.320 60.000 18.24 7.15 45.69 3.91
222 230 3.001736 GCATCTGAATTCGTGGAGCTAAC 59.998 47.826 0.04 0.00 0.00 2.34
223 231 3.198068 GCATCTGAATTCGTGGAGCTAA 58.802 45.455 0.04 0.00 0.00 3.09
224 232 2.799562 CGCATCTGAATTCGTGGAGCTA 60.800 50.000 0.04 0.00 0.00 3.32
225 233 1.661341 GCATCTGAATTCGTGGAGCT 58.339 50.000 0.04 0.00 0.00 4.09
226 234 0.302890 CGCATCTGAATTCGTGGAGC 59.697 55.000 0.04 0.72 0.00 4.70
227 235 0.302890 GCGCATCTGAATTCGTGGAG 59.697 55.000 0.30 0.00 0.00 3.86
270 289 7.217200 ACAGTACTGATTTTGCTTCTCTGTTA 58.783 34.615 29.30 0.00 0.00 2.41
355 380 3.591527 TGGGGTCATTGTTTACAGGAGAT 59.408 43.478 0.00 0.00 0.00 2.75
356 381 2.983192 TGGGGTCATTGTTTACAGGAGA 59.017 45.455 0.00 0.00 0.00 3.71
357 382 3.433306 TGGGGTCATTGTTTACAGGAG 57.567 47.619 0.00 0.00 0.00 3.69
408 452 9.826574 TCAACGGCTTAACTAGTCAATAATTAT 57.173 29.630 0.00 0.00 0.00 1.28
409 453 9.309516 CTCAACGGCTTAACTAGTCAATAATTA 57.690 33.333 0.00 0.00 0.00 1.40
414 458 4.504858 CCTCAACGGCTTAACTAGTCAAT 58.495 43.478 0.00 0.00 0.00 2.57
428 472 1.592223 GGAGACTGACCCTCAACGG 59.408 63.158 0.00 0.00 32.48 4.44
430 474 0.528470 CTCGGAGACTGACCCTCAAC 59.472 60.000 0.00 0.00 32.48 3.18
508 563 0.176680 GTCAGCCGACATCACAGGAT 59.823 55.000 0.00 0.00 42.13 3.24
577 636 1.202927 TGAGCCTGAACTTTTCCTGGG 60.203 52.381 0.00 0.00 0.00 4.45
641 700 0.107459 GTCTGATCTTGGGGGCACTC 60.107 60.000 0.00 0.00 0.00 3.51
644 703 1.993653 CAGTCTGATCTTGGGGGCA 59.006 57.895 0.00 0.00 0.00 5.36
721 787 2.291930 TGTTGGAGGGTTTTGGACAAGT 60.292 45.455 0.00 0.00 0.00 3.16
726 792 2.838637 AGTTGTTGGAGGGTTTTGGA 57.161 45.000 0.00 0.00 0.00 3.53
752 818 4.578105 CCCATCTTTCAGTTCATAGCCTTC 59.422 45.833 0.00 0.00 0.00 3.46
835 901 9.784531 ACCTGTAATATTATGGAACTTCAGATG 57.215 33.333 18.48 3.75 0.00 2.90
1009 1079 8.562892 GGGCATATGCATTATAAGTATAGCTTG 58.437 37.037 28.07 0.00 44.36 4.01
1047 1158 2.138320 TCAGAGAAAGCAGCAAAGTCG 58.862 47.619 0.00 0.00 0.00 4.18
1095 1206 0.863144 GAGTCGTAAAAGCGTTGGCA 59.137 50.000 0.00 0.00 43.41 4.92
1144 1255 6.657966 AGTCTTGAATGGCATACATATCATGG 59.342 38.462 0.00 0.00 39.40 3.66
1306 1418 6.412362 ACCTCACTATACTTCTGCATAAGG 57.588 41.667 15.45 1.32 0.00 2.69
1312 1424 5.360144 TCCAAGTACCTCACTATACTTCTGC 59.640 44.000 0.00 0.00 39.15 4.26
1357 1470 7.775561 AGCTAATAGAAAAAGACTGGGGTAATG 59.224 37.037 0.00 0.00 0.00 1.90
1597 1711 6.270815 AGCATGATACTTGAAATTGCATGTC 58.729 36.000 8.20 0.00 35.38 3.06
1642 1758 1.153066 TGAAGCCAAACCTGCGTCA 60.153 52.632 0.00 0.00 43.30 4.35
1876 1997 4.511527 ACATTAGTGGAAGATGCTCTGTG 58.488 43.478 0.00 0.00 0.00 3.66
1916 2037 2.661176 AGTGGAAACCCAGGATCCTA 57.339 50.000 15.67 0.00 33.65 2.94
1997 2118 9.132923 TGAATTGGGTGTGTGTAAATAACTAAA 57.867 29.630 0.00 0.00 0.00 1.85
1998 2119 8.693120 TGAATTGGGTGTGTGTAAATAACTAA 57.307 30.769 0.00 0.00 0.00 2.24
1999 2120 8.735315 CATGAATTGGGTGTGTGTAAATAACTA 58.265 33.333 0.00 0.00 0.00 2.24
2000 2121 7.232534 ACATGAATTGGGTGTGTGTAAATAACT 59.767 33.333 0.00 0.00 0.00 2.24
2001 2122 7.375053 ACATGAATTGGGTGTGTGTAAATAAC 58.625 34.615 0.00 0.00 0.00 1.89
2002 2123 7.531857 ACATGAATTGGGTGTGTGTAAATAA 57.468 32.000 0.00 0.00 0.00 1.40
2003 2124 7.531857 AACATGAATTGGGTGTGTGTAAATA 57.468 32.000 0.00 0.00 0.00 1.40
2072 2193 1.619332 ACTCCTTCGAACAGGAACTCC 59.381 52.381 7.26 0.00 42.76 3.85
2094 2215 9.672673 CAGGAAAGATTTACTTCCAAGAGAATA 57.327 33.333 3.83 0.00 37.93 1.75
2304 2426 3.432749 CCTCACCACCGATGAATTCTCAT 60.433 47.826 7.05 0.00 45.34 2.90
2316 2450 0.179037 ATCATGCATCCTCACCACCG 60.179 55.000 0.00 0.00 0.00 4.94
2343 2477 3.813443 CCCATGTGGATCTTACTCCAAG 58.187 50.000 0.00 0.00 46.66 3.61
2347 2481 3.498774 ATGCCCATGTGGATCTTACTC 57.501 47.619 0.00 0.00 37.39 2.59
2352 2486 3.181436 CCTAAGAATGCCCATGTGGATCT 60.181 47.826 0.00 2.37 37.39 2.75
2402 2536 2.914213 GCAAGAGCGTCGCGATAC 59.086 61.111 14.06 7.79 0.00 2.24
2459 2593 1.129058 AGGATACAAAGTAGCCCGGG 58.871 55.000 19.09 19.09 41.41 5.73
2476 2610 6.660949 AGACCCTTCAGATGAAATTACAAAGG 59.339 38.462 0.00 0.00 33.07 3.11
2496 2630 3.955650 TTGTCTAAGCTACACAGACCC 57.044 47.619 12.51 0.00 38.32 4.46
2514 2649 8.871862 CACCCAATCAAATATTTACACACATTG 58.128 33.333 0.00 3.63 0.00 2.82
2517 2652 6.015095 TGCACCCAATCAAATATTTACACACA 60.015 34.615 0.00 0.00 0.00 3.72
2518 2653 6.393990 TGCACCCAATCAAATATTTACACAC 58.606 36.000 0.00 0.00 0.00 3.82
2524 2659 6.709281 TGACATTGCACCCAATCAAATATTT 58.291 32.000 0.00 0.00 39.60 1.40
2569 2915 8.588472 TCCTCACAAATAGATGACCAGTATATG 58.412 37.037 0.00 0.00 0.00 1.78
2582 2930 6.214615 TGGACCTGTATTTCCTCACAAATAGA 59.785 38.462 0.00 0.00 30.46 1.98
2653 3001 5.034852 TCATCGGATTTGCCTATTTCTGA 57.965 39.130 0.00 0.00 0.00 3.27
2678 3026 3.134574 TCGCCACTCCTTACACATTTT 57.865 42.857 0.00 0.00 0.00 1.82
2682 3030 0.320421 GCTTCGCCACTCCTTACACA 60.320 55.000 0.00 0.00 0.00 3.72
2683 3031 1.352156 CGCTTCGCCACTCCTTACAC 61.352 60.000 0.00 0.00 0.00 2.90
2686 3034 1.511305 CTCGCTTCGCCACTCCTTA 59.489 57.895 0.00 0.00 0.00 2.69
2687 3035 2.262915 CTCGCTTCGCCACTCCTT 59.737 61.111 0.00 0.00 0.00 3.36
2688 3036 3.764466 CCTCGCTTCGCCACTCCT 61.764 66.667 0.00 0.00 0.00 3.69
2689 3037 4.821589 CCCTCGCTTCGCCACTCC 62.822 72.222 0.00 0.00 0.00 3.85
2693 3041 4.408821 ATTGCCCTCGCTTCGCCA 62.409 61.111 0.00 0.00 35.36 5.69
2694 3042 3.880846 CATTGCCCTCGCTTCGCC 61.881 66.667 0.00 0.00 35.36 5.54
2695 3043 1.366111 TAACATTGCCCTCGCTTCGC 61.366 55.000 0.00 0.00 35.36 4.70
2696 3044 0.652592 CTAACATTGCCCTCGCTTCG 59.347 55.000 0.00 0.00 35.36 3.79
2697 3045 2.024176 TCTAACATTGCCCTCGCTTC 57.976 50.000 0.00 0.00 35.36 3.86
2698 3046 2.489938 TTCTAACATTGCCCTCGCTT 57.510 45.000 0.00 0.00 35.36 4.68
2699 3047 2.290323 ACTTTCTAACATTGCCCTCGCT 60.290 45.455 0.00 0.00 35.36 4.93
2700 3048 2.084546 ACTTTCTAACATTGCCCTCGC 58.915 47.619 0.00 0.00 0.00 5.03
2701 3049 3.751175 TCAACTTTCTAACATTGCCCTCG 59.249 43.478 0.00 0.00 0.00 4.63
2702 3050 5.705609 TTCAACTTTCTAACATTGCCCTC 57.294 39.130 0.00 0.00 0.00 4.30
2703 3051 6.478512 TTTTCAACTTTCTAACATTGCCCT 57.521 33.333 0.00 0.00 0.00 5.19
2724 3072 5.871539 ACTTTCGTCATGTTACACGTTTTT 58.128 33.333 4.80 0.00 37.30 1.94
2725 3073 5.473796 ACTTTCGTCATGTTACACGTTTT 57.526 34.783 4.80 0.00 37.30 2.43
2726 3074 5.260140 CAACTTTCGTCATGTTACACGTTT 58.740 37.500 4.80 0.00 37.30 3.60
2727 3075 4.260456 CCAACTTTCGTCATGTTACACGTT 60.260 41.667 4.80 0.00 37.30 3.99
2728 3076 3.246699 CCAACTTTCGTCATGTTACACGT 59.753 43.478 4.80 0.00 37.30 4.49
2729 3077 3.363575 CCCAACTTTCGTCATGTTACACG 60.364 47.826 0.00 0.00 37.36 4.49
2730 3078 3.058501 CCCCAACTTTCGTCATGTTACAC 60.059 47.826 0.00 0.00 0.00 2.90
2731 3079 3.142951 CCCCAACTTTCGTCATGTTACA 58.857 45.455 0.00 0.00 0.00 2.41
2732 3080 3.404899 TCCCCAACTTTCGTCATGTTAC 58.595 45.455 0.00 0.00 0.00 2.50
2733 3081 3.670625 CTCCCCAACTTTCGTCATGTTA 58.329 45.455 0.00 0.00 0.00 2.41
2734 3082 2.504367 CTCCCCAACTTTCGTCATGTT 58.496 47.619 0.00 0.00 0.00 2.71
2735 3083 1.882352 GCTCCCCAACTTTCGTCATGT 60.882 52.381 0.00 0.00 0.00 3.21
2736 3084 0.804989 GCTCCCCAACTTTCGTCATG 59.195 55.000 0.00 0.00 0.00 3.07
2737 3085 0.693049 AGCTCCCCAACTTTCGTCAT 59.307 50.000 0.00 0.00 0.00 3.06
2738 3086 0.034896 GAGCTCCCCAACTTTCGTCA 59.965 55.000 0.87 0.00 0.00 4.35
2739 3087 1.014564 CGAGCTCCCCAACTTTCGTC 61.015 60.000 8.47 0.00 0.00 4.20
2740 3088 1.004918 CGAGCTCCCCAACTTTCGT 60.005 57.895 8.47 0.00 0.00 3.85
2741 3089 0.245539 TACGAGCTCCCCAACTTTCG 59.754 55.000 8.47 0.00 0.00 3.46
2742 3090 2.693267 ATACGAGCTCCCCAACTTTC 57.307 50.000 8.47 0.00 0.00 2.62
2743 3091 2.304761 TGAATACGAGCTCCCCAACTTT 59.695 45.455 8.47 0.00 0.00 2.66
2744 3092 1.906574 TGAATACGAGCTCCCCAACTT 59.093 47.619 8.47 0.00 0.00 2.66
2745 3093 1.482593 CTGAATACGAGCTCCCCAACT 59.517 52.381 8.47 0.00 0.00 3.16
2746 3094 1.207329 ACTGAATACGAGCTCCCCAAC 59.793 52.381 8.47 0.00 0.00 3.77
2747 3095 1.568504 ACTGAATACGAGCTCCCCAA 58.431 50.000 8.47 0.00 0.00 4.12
2748 3096 1.480954 GAACTGAATACGAGCTCCCCA 59.519 52.381 8.47 0.00 0.00 4.96
2749 3097 1.536284 CGAACTGAATACGAGCTCCCC 60.536 57.143 8.47 0.00 0.00 4.81
2750 3098 1.536284 CCGAACTGAATACGAGCTCCC 60.536 57.143 8.47 0.00 0.00 4.30
2751 3099 1.841450 CCGAACTGAATACGAGCTCC 58.159 55.000 8.47 0.00 0.00 4.70
2752 3100 1.201343 GCCGAACTGAATACGAGCTC 58.799 55.000 2.73 2.73 0.00 4.09
2753 3101 0.525668 CGCCGAACTGAATACGAGCT 60.526 55.000 0.00 0.00 0.00 4.09
2754 3102 1.917921 CGCCGAACTGAATACGAGC 59.082 57.895 0.00 0.00 0.00 5.03
2755 3103 1.480219 GGCGCCGAACTGAATACGAG 61.480 60.000 12.58 0.00 0.00 4.18
2756 3104 1.517694 GGCGCCGAACTGAATACGA 60.518 57.895 12.58 0.00 0.00 3.43
2757 3105 2.856346 CGGCGCCGAACTGAATACG 61.856 63.158 44.86 11.91 42.83 3.06
2758 3106 3.003478 CGGCGCCGAACTGAATAC 58.997 61.111 44.86 1.62 42.83 1.89
2777 3125 3.919973 TAGGCGCCGGTTGACGTTC 62.920 63.158 23.20 0.00 42.24 3.95
2778 3126 3.993584 TAGGCGCCGGTTGACGTT 61.994 61.111 23.20 1.83 42.24 3.99
2779 3127 4.729856 GTAGGCGCCGGTTGACGT 62.730 66.667 23.20 2.71 42.24 4.34
2780 3128 4.728102 TGTAGGCGCCGGTTGACG 62.728 66.667 23.20 0.00 43.80 4.35
2781 3129 2.813908 CTGTAGGCGCCGGTTGAC 60.814 66.667 23.20 15.37 0.00 3.18
2782 3130 4.752879 GCTGTAGGCGCCGGTTGA 62.753 66.667 23.20 1.91 0.00 3.18
2784 3132 3.835790 TTTGCTGTAGGCGCCGGTT 62.836 57.895 23.20 6.30 45.43 4.44
2785 3133 4.323477 TTTGCTGTAGGCGCCGGT 62.323 61.111 23.20 7.21 45.43 5.28
2786 3134 3.499737 CTTTGCTGTAGGCGCCGG 61.500 66.667 23.20 13.79 45.43 6.13
2787 3135 4.166011 GCTTTGCTGTAGGCGCCG 62.166 66.667 23.20 7.90 45.43 6.46
2788 3136 3.815396 GGCTTTGCTGTAGGCGCC 61.815 66.667 21.89 21.89 45.43 6.53
2789 3137 2.533391 CTTGGCTTTGCTGTAGGCGC 62.533 60.000 0.00 0.00 45.43 6.53
2790 3138 1.237285 ACTTGGCTTTGCTGTAGGCG 61.237 55.000 0.00 0.00 45.43 5.52
2791 3139 0.242017 CACTTGGCTTTGCTGTAGGC 59.758 55.000 0.00 0.00 42.22 3.93
2792 3140 0.883833 CCACTTGGCTTTGCTGTAGG 59.116 55.000 0.00 0.00 0.00 3.18
2793 3141 0.883833 CCCACTTGGCTTTGCTGTAG 59.116 55.000 0.00 0.00 0.00 2.74
2794 3142 3.034924 CCCACTTGGCTTTGCTGTA 57.965 52.632 0.00 0.00 0.00 2.74
2795 3143 3.860681 CCCACTTGGCTTTGCTGT 58.139 55.556 0.00 0.00 0.00 4.40
2815 3163 3.443045 CTGGTGCATTCGTGGGCC 61.443 66.667 0.00 0.00 0.00 5.80
2816 3164 4.120331 GCTGGTGCATTCGTGGGC 62.120 66.667 0.00 0.00 39.41 5.36
2817 3165 3.803082 CGCTGGTGCATTCGTGGG 61.803 66.667 0.00 0.00 39.64 4.61
2818 3166 4.465512 GCGCTGGTGCATTCGTGG 62.466 66.667 0.00 0.00 39.64 4.94
2819 3167 4.799473 CGCGCTGGTGCATTCGTG 62.799 66.667 5.56 0.00 39.64 4.35
2822 3170 3.386867 CTTCCGCGCTGGTGCATTC 62.387 63.158 16.00 0.00 39.64 2.67
2823 3171 3.434319 CTTCCGCGCTGGTGCATT 61.434 61.111 16.00 0.00 39.64 3.56
2831 3179 2.946762 GAAAACAGCTTCCGCGCT 59.053 55.556 5.56 0.00 42.32 5.92
2832 3180 2.499732 CGAAAACAGCTTCCGCGC 60.500 61.111 0.00 0.00 42.32 6.86
2833 3181 1.438710 CACGAAAACAGCTTCCGCG 60.439 57.895 0.00 0.00 42.32 6.46
2834 3182 1.082104 CCACGAAAACAGCTTCCGC 60.082 57.895 0.00 0.00 0.00 5.54
2835 3183 0.941542 TTCCACGAAAACAGCTTCCG 59.058 50.000 0.00 0.00 0.00 4.30
2836 3184 3.430333 TTTTCCACGAAAACAGCTTCC 57.570 42.857 0.00 0.00 36.73 3.46
2837 3185 4.421058 ACTTTTTCCACGAAAACAGCTTC 58.579 39.130 0.00 0.00 40.56 3.86
2838 3186 4.450082 ACTTTTTCCACGAAAACAGCTT 57.550 36.364 0.00 0.00 40.56 3.74
2839 3187 4.450082 AACTTTTTCCACGAAAACAGCT 57.550 36.364 0.00 0.00 40.56 4.24
2840 3188 4.862574 AGAAACTTTTTCCACGAAAACAGC 59.137 37.500 0.00 0.00 40.56 4.40
2841 3189 8.455598 TTTAGAAACTTTTTCCACGAAAACAG 57.544 30.769 0.00 4.15 40.56 3.16
2842 3190 8.813643 TTTTAGAAACTTTTTCCACGAAAACA 57.186 26.923 0.00 0.00 40.56 2.83
2843 3191 9.895894 GATTTTAGAAACTTTTTCCACGAAAAC 57.104 29.630 0.00 0.00 40.56 2.43
2844 3192 9.863845 AGATTTTAGAAACTTTTTCCACGAAAA 57.136 25.926 0.00 0.00 39.36 2.29
2854 3202 9.308318 TGCGCTTTTTAGATTTTAGAAACTTTT 57.692 25.926 9.73 0.00 0.00 2.27
2855 3203 8.865590 TGCGCTTTTTAGATTTTAGAAACTTT 57.134 26.923 9.73 0.00 0.00 2.66
2857 3205 9.556030 GTATGCGCTTTTTAGATTTTAGAAACT 57.444 29.630 9.73 0.00 0.00 2.66
2858 3206 8.513090 CGTATGCGCTTTTTAGATTTTAGAAAC 58.487 33.333 9.73 0.00 0.00 2.78
2859 3207 8.595781 CGTATGCGCTTTTTAGATTTTAGAAA 57.404 30.769 9.73 0.00 0.00 2.52
2878 3226 5.229887 CCATTCAACAAAATAGTGCGTATGC 59.770 40.000 0.00 0.00 43.20 3.14
2879 3227 6.550843 TCCATTCAACAAAATAGTGCGTATG 58.449 36.000 0.00 0.00 0.00 2.39
2880 3228 6.677920 GCTCCATTCAACAAAATAGTGCGTAT 60.678 38.462 0.00 0.00 0.00 3.06
2881 3229 5.391523 GCTCCATTCAACAAAATAGTGCGTA 60.392 40.000 0.00 0.00 0.00 4.42
2882 3230 4.615912 GCTCCATTCAACAAAATAGTGCGT 60.616 41.667 0.00 0.00 0.00 5.24
2883 3231 3.853671 GCTCCATTCAACAAAATAGTGCG 59.146 43.478 0.00 0.00 0.00 5.34
2884 3232 3.853671 CGCTCCATTCAACAAAATAGTGC 59.146 43.478 0.00 0.00 0.00 4.40
2885 3233 4.414852 CCGCTCCATTCAACAAAATAGTG 58.585 43.478 0.00 0.00 0.00 2.74
2886 3234 3.119495 GCCGCTCCATTCAACAAAATAGT 60.119 43.478 0.00 0.00 0.00 2.12
2887 3235 3.438360 GCCGCTCCATTCAACAAAATAG 58.562 45.455 0.00 0.00 0.00 1.73
2888 3236 2.165437 GGCCGCTCCATTCAACAAAATA 59.835 45.455 0.00 0.00 34.01 1.40
2889 3237 1.066929 GGCCGCTCCATTCAACAAAAT 60.067 47.619 0.00 0.00 34.01 1.82
2890 3238 0.316841 GGCCGCTCCATTCAACAAAA 59.683 50.000 0.00 0.00 34.01 2.44
2891 3239 1.861542 CGGCCGCTCCATTCAACAAA 61.862 55.000 14.67 0.00 34.01 2.83
2892 3240 2.331893 CGGCCGCTCCATTCAACAA 61.332 57.895 14.67 0.00 34.01 2.83
2893 3241 2.745884 CGGCCGCTCCATTCAACA 60.746 61.111 14.67 0.00 34.01 3.33
2894 3242 4.179579 GCGGCCGCTCCATTCAAC 62.180 66.667 41.71 9.84 38.26 3.18
2906 3254 3.340953 ATGCATGTGAAACGCGGCC 62.341 57.895 12.47 0.00 42.39 6.13
2907 3255 2.153945 CATGCATGTGAAACGCGGC 61.154 57.895 18.91 1.15 42.39 6.53
2908 3256 1.209898 ACATGCATGTGAAACGCGG 59.790 52.632 30.92 1.39 42.39 6.46
2909 3257 4.845177 ACATGCATGTGAAACGCG 57.155 50.000 30.92 3.53 42.39 6.01
2917 3265 4.540359 AAATTAACAGCCACATGCATGT 57.460 36.364 26.61 26.61 44.83 3.21
2918 3266 5.866335 AAAAATTAACAGCCACATGCATG 57.134 34.783 25.09 25.09 44.83 4.06
2937 3285 5.698832 CCACATGCATTAGAAGACGAAAAA 58.301 37.500 0.00 0.00 0.00 1.94
2938 3286 4.379394 GCCACATGCATTAGAAGACGAAAA 60.379 41.667 0.00 0.00 40.77 2.29
2939 3287 3.126858 GCCACATGCATTAGAAGACGAAA 59.873 43.478 0.00 0.00 40.77 3.46
2940 3288 2.677836 GCCACATGCATTAGAAGACGAA 59.322 45.455 0.00 0.00 40.77 3.85
2941 3289 2.093500 AGCCACATGCATTAGAAGACGA 60.093 45.455 0.00 0.00 44.83 4.20
2942 3290 2.031314 CAGCCACATGCATTAGAAGACG 59.969 50.000 0.00 0.00 44.83 4.18
2943 3291 3.012518 ACAGCCACATGCATTAGAAGAC 58.987 45.455 0.00 0.00 44.83 3.01
2944 3292 3.354948 ACAGCCACATGCATTAGAAGA 57.645 42.857 0.00 0.00 44.83 2.87
2945 3293 4.497006 GCTAACAGCCACATGCATTAGAAG 60.497 45.833 0.00 0.00 44.83 2.85
2946 3294 3.378112 GCTAACAGCCACATGCATTAGAA 59.622 43.478 0.00 0.00 44.83 2.10
2947 3295 2.945008 GCTAACAGCCACATGCATTAGA 59.055 45.455 0.00 0.00 44.83 2.10
2948 3296 2.684374 TGCTAACAGCCACATGCATTAG 59.316 45.455 0.00 0.00 44.83 1.73
2949 3297 2.720915 TGCTAACAGCCACATGCATTA 58.279 42.857 0.00 0.00 44.83 1.90
2950 3298 1.548081 TGCTAACAGCCACATGCATT 58.452 45.000 0.00 0.00 44.83 3.56
2951 3299 1.771565 ATGCTAACAGCCACATGCAT 58.228 45.000 0.00 0.00 44.83 3.96
2952 3300 1.548081 AATGCTAACAGCCACATGCA 58.452 45.000 0.00 0.00 44.83 3.96
2953 3301 3.781079 TTAATGCTAACAGCCACATGC 57.219 42.857 0.00 0.00 41.51 4.06
2954 3302 4.097714 CGTTTAATGCTAACAGCCACATG 58.902 43.478 0.00 0.00 41.51 3.21
2955 3303 3.756434 ACGTTTAATGCTAACAGCCACAT 59.244 39.130 0.00 0.00 41.51 3.21
2956 3304 3.058570 CACGTTTAATGCTAACAGCCACA 60.059 43.478 0.00 0.00 41.51 4.17
2957 3305 3.058501 ACACGTTTAATGCTAACAGCCAC 60.059 43.478 0.00 0.00 41.51 5.01
2958 3306 3.142951 ACACGTTTAATGCTAACAGCCA 58.857 40.909 0.00 0.00 41.51 4.75
2959 3307 3.824414 ACACGTTTAATGCTAACAGCC 57.176 42.857 0.00 0.00 41.51 4.85
2960 3308 4.611366 GTGAACACGTTTAATGCTAACAGC 59.389 41.667 0.00 0.00 42.82 4.40
2961 3309 5.619607 GTGTGAACACGTTTAATGCTAACAG 59.380 40.000 0.00 0.00 37.10 3.16
2962 3310 5.503498 GTGTGAACACGTTTAATGCTAACA 58.497 37.500 0.00 0.00 37.10 2.41
2976 3324 6.560253 AAATGGAGTAATCAGTGTGAACAC 57.440 37.500 5.42 5.42 46.77 3.32
2977 3325 5.408299 CGAAATGGAGTAATCAGTGTGAACA 59.592 40.000 0.00 0.00 0.00 3.18
2978 3326 5.637810 TCGAAATGGAGTAATCAGTGTGAAC 59.362 40.000 0.00 0.00 0.00 3.18
2979 3327 5.789521 TCGAAATGGAGTAATCAGTGTGAA 58.210 37.500 0.00 0.00 0.00 3.18
2980 3328 5.400066 TCGAAATGGAGTAATCAGTGTGA 57.600 39.130 0.00 0.00 0.00 3.58
2981 3329 5.639506 AGTTCGAAATGGAGTAATCAGTGTG 59.360 40.000 0.00 0.00 0.00 3.82
2982 3330 5.639506 CAGTTCGAAATGGAGTAATCAGTGT 59.360 40.000 17.48 0.00 0.00 3.55
2983 3331 5.869344 TCAGTTCGAAATGGAGTAATCAGTG 59.131 40.000 23.82 0.00 0.00 3.66
2984 3332 6.037786 TCAGTTCGAAATGGAGTAATCAGT 57.962 37.500 23.82 0.00 0.00 3.41
2985 3333 6.454318 CGTTCAGTTCGAAATGGAGTAATCAG 60.454 42.308 23.82 5.07 34.69 2.90
2986 3334 5.347635 CGTTCAGTTCGAAATGGAGTAATCA 59.652 40.000 23.82 0.61 34.69 2.57
2987 3335 5.220416 CCGTTCAGTTCGAAATGGAGTAATC 60.220 44.000 23.82 3.76 34.67 1.75
2988 3336 4.630069 CCGTTCAGTTCGAAATGGAGTAAT 59.370 41.667 23.82 0.00 34.67 1.89
2989 3337 3.991773 CCGTTCAGTTCGAAATGGAGTAA 59.008 43.478 23.82 9.28 34.67 2.24
2990 3338 3.256383 TCCGTTCAGTTCGAAATGGAGTA 59.744 43.478 23.82 3.22 36.16 2.59
2991 3339 2.036733 TCCGTTCAGTTCGAAATGGAGT 59.963 45.455 23.82 0.00 36.16 3.85
2992 3340 2.683968 TCCGTTCAGTTCGAAATGGAG 58.316 47.619 23.82 15.07 36.16 3.86
2993 3341 2.823924 TCCGTTCAGTTCGAAATGGA 57.176 45.000 23.82 14.35 37.83 3.41
2994 3342 2.351726 GGATCCGTTCAGTTCGAAATGG 59.648 50.000 23.82 12.04 34.69 3.16
2995 3343 3.000041 TGGATCCGTTCAGTTCGAAATG 59.000 45.455 19.04 19.04 34.69 2.32
2996 3344 3.000727 GTGGATCCGTTCAGTTCGAAAT 58.999 45.455 7.39 0.00 34.69 2.17
2997 3345 2.409975 GTGGATCCGTTCAGTTCGAAA 58.590 47.619 7.39 0.00 34.69 3.46
2998 3346 1.667756 CGTGGATCCGTTCAGTTCGAA 60.668 52.381 7.39 0.00 0.00 3.71
2999 3347 0.109458 CGTGGATCCGTTCAGTTCGA 60.109 55.000 7.39 0.00 0.00 3.71
3000 3348 1.683790 GCGTGGATCCGTTCAGTTCG 61.684 60.000 7.39 3.14 0.00 3.95
3001 3349 0.669318 TGCGTGGATCCGTTCAGTTC 60.669 55.000 7.39 0.00 0.00 3.01
3002 3350 0.036388 ATGCGTGGATCCGTTCAGTT 60.036 50.000 7.39 0.00 0.00 3.16
3003 3351 0.821517 TATGCGTGGATCCGTTCAGT 59.178 50.000 7.39 0.00 0.00 3.41
3004 3352 2.154854 ATATGCGTGGATCCGTTCAG 57.845 50.000 7.39 0.00 0.00 3.02
3005 3353 2.159028 TGAATATGCGTGGATCCGTTCA 60.159 45.455 7.39 4.67 0.00 3.18
3006 3354 2.479837 TGAATATGCGTGGATCCGTTC 58.520 47.619 7.39 0.00 0.00 3.95
3007 3355 2.613026 TGAATATGCGTGGATCCGTT 57.387 45.000 7.39 0.00 0.00 4.44
3008 3356 2.839486 ATGAATATGCGTGGATCCGT 57.161 45.000 7.39 0.00 0.00 4.69
3009 3357 3.498018 TGAAATGAATATGCGTGGATCCG 59.502 43.478 7.39 0.00 0.00 4.18
3010 3358 4.756642 TCTGAAATGAATATGCGTGGATCC 59.243 41.667 4.20 4.20 0.00 3.36
3011 3359 5.468072 ACTCTGAAATGAATATGCGTGGATC 59.532 40.000 0.00 0.00 0.00 3.36
3012 3360 5.371526 ACTCTGAAATGAATATGCGTGGAT 58.628 37.500 0.00 0.00 0.00 3.41
3013 3361 4.769688 ACTCTGAAATGAATATGCGTGGA 58.230 39.130 0.00 0.00 0.00 4.02
3014 3362 5.490139 AACTCTGAAATGAATATGCGTGG 57.510 39.130 0.00 0.00 0.00 4.94
3015 3363 8.894409 TTAAAACTCTGAAATGAATATGCGTG 57.106 30.769 0.00 0.00 0.00 5.34
3043 3391 9.187455 GCGGTTTGAAAGATATGACTTTTTAAA 57.813 29.630 0.00 0.00 39.71 1.52
3044 3392 7.535940 CGCGGTTTGAAAGATATGACTTTTTAA 59.464 33.333 0.00 0.00 39.71 1.52
3045 3393 7.018826 CGCGGTTTGAAAGATATGACTTTTTA 58.981 34.615 0.00 0.00 39.71 1.52
3046 3394 5.856455 CGCGGTTTGAAAGATATGACTTTTT 59.144 36.000 0.00 0.00 39.71 1.94
3047 3395 5.390613 CGCGGTTTGAAAGATATGACTTTT 58.609 37.500 0.00 0.00 39.71 2.27
3048 3396 4.671766 GCGCGGTTTGAAAGATATGACTTT 60.672 41.667 8.83 0.00 41.86 2.66
3049 3397 3.181510 GCGCGGTTTGAAAGATATGACTT 60.182 43.478 8.83 0.00 0.00 3.01
3050 3398 2.351726 GCGCGGTTTGAAAGATATGACT 59.648 45.455 8.83 0.00 0.00 3.41
3051 3399 2.705154 GCGCGGTTTGAAAGATATGAC 58.295 47.619 8.83 0.00 0.00 3.06
3052 3400 1.326245 CGCGCGGTTTGAAAGATATGA 59.674 47.619 24.84 0.00 0.00 2.15
3053 3401 1.062002 ACGCGCGGTTTGAAAGATATG 59.938 47.619 35.22 0.00 0.00 1.78
3054 3402 1.326548 GACGCGCGGTTTGAAAGATAT 59.673 47.619 35.22 7.72 0.00 1.63
3055 3403 0.717224 GACGCGCGGTTTGAAAGATA 59.283 50.000 35.22 0.00 0.00 1.98
3056 3404 1.495951 GACGCGCGGTTTGAAAGAT 59.504 52.632 35.22 8.59 0.00 2.40
3057 3405 2.932905 GACGCGCGGTTTGAAAGA 59.067 55.556 35.22 0.00 0.00 2.52
3058 3406 2.496794 CGACGCGCGGTTTGAAAG 60.497 61.111 35.22 11.38 36.03 2.62
3067 3415 2.135283 GATCTGAATTCCGACGCGCG 62.135 60.000 30.96 30.96 40.47 6.86
3068 3416 0.872021 AGATCTGAATTCCGACGCGC 60.872 55.000 5.73 0.00 0.00 6.86
3069 3417 0.848942 CAGATCTGAATTCCGACGCG 59.151 55.000 18.34 3.53 0.00 6.01
3070 3418 1.927895 ACAGATCTGAATTCCGACGC 58.072 50.000 29.27 0.00 0.00 5.19
3071 3419 4.388773 TGAAAACAGATCTGAATTCCGACG 59.611 41.667 29.27 0.00 32.20 5.12
3072 3420 5.409826 AGTGAAAACAGATCTGAATTCCGAC 59.590 40.000 29.27 21.74 32.20 4.79
3073 3421 5.409520 CAGTGAAAACAGATCTGAATTCCGA 59.590 40.000 29.27 13.47 32.20 4.55
3074 3422 5.625251 CAGTGAAAACAGATCTGAATTCCG 58.375 41.667 29.27 16.63 32.20 4.30
3075 3423 5.182760 AGCAGTGAAAACAGATCTGAATTCC 59.817 40.000 29.27 20.75 32.20 3.01
3076 3424 6.084925 CAGCAGTGAAAACAGATCTGAATTC 58.915 40.000 29.27 26.71 33.07 2.17
3077 3425 5.048224 CCAGCAGTGAAAACAGATCTGAATT 60.048 40.000 29.27 20.93 0.00 2.17
3078 3426 4.458295 CCAGCAGTGAAAACAGATCTGAAT 59.542 41.667 29.27 14.23 0.00 2.57
3079 3427 3.817084 CCAGCAGTGAAAACAGATCTGAA 59.183 43.478 29.27 6.26 0.00 3.02
3080 3428 3.071457 TCCAGCAGTGAAAACAGATCTGA 59.929 43.478 29.27 3.06 0.00 3.27
3081 3429 3.405831 TCCAGCAGTGAAAACAGATCTG 58.594 45.455 21.37 21.37 0.00 2.90
3082 3430 3.777106 TCCAGCAGTGAAAACAGATCT 57.223 42.857 0.00 0.00 0.00 2.75
3083 3431 3.817647 AGTTCCAGCAGTGAAAACAGATC 59.182 43.478 0.00 0.00 0.00 2.75
3084 3432 3.817647 GAGTTCCAGCAGTGAAAACAGAT 59.182 43.478 0.00 0.00 0.00 2.90
3085 3433 3.118261 AGAGTTCCAGCAGTGAAAACAGA 60.118 43.478 0.00 0.00 0.00 3.41
3086 3434 3.209410 AGAGTTCCAGCAGTGAAAACAG 58.791 45.455 0.00 0.00 0.00 3.16
3087 3435 3.281727 AGAGTTCCAGCAGTGAAAACA 57.718 42.857 0.00 0.00 0.00 2.83
3088 3436 3.793465 GCAAGAGTTCCAGCAGTGAAAAC 60.793 47.826 0.00 0.00 0.00 2.43
3089 3437 2.358898 GCAAGAGTTCCAGCAGTGAAAA 59.641 45.455 0.00 0.00 0.00 2.29
3090 3438 1.949525 GCAAGAGTTCCAGCAGTGAAA 59.050 47.619 0.00 0.00 0.00 2.69
3091 3439 1.597742 GCAAGAGTTCCAGCAGTGAA 58.402 50.000 0.00 0.00 0.00 3.18
3092 3440 0.601046 CGCAAGAGTTCCAGCAGTGA 60.601 55.000 0.00 0.00 43.02 3.41
3093 3441 0.601046 TCGCAAGAGTTCCAGCAGTG 60.601 55.000 0.00 0.00 45.01 3.66
3094 3442 1.748403 TCGCAAGAGTTCCAGCAGT 59.252 52.632 0.00 0.00 45.01 4.40
3095 3443 4.681421 TCGCAAGAGTTCCAGCAG 57.319 55.556 0.00 0.00 45.01 4.24
3106 3454 3.430218 AGTTTCAAAGATCTCGTCGCAAG 59.570 43.478 0.00 0.00 0.00 4.01
3107 3455 3.390135 AGTTTCAAAGATCTCGTCGCAA 58.610 40.909 0.00 0.00 0.00 4.85
3108 3456 3.026630 AGTTTCAAAGATCTCGTCGCA 57.973 42.857 0.00 0.00 0.00 5.10
3109 3457 4.413087 TCTAGTTTCAAAGATCTCGTCGC 58.587 43.478 0.00 0.00 0.00 5.19
3110 3458 5.683743 GGATCTAGTTTCAAAGATCTCGTCG 59.316 44.000 11.05 0.00 44.94 5.12
3111 3459 6.565234 TGGATCTAGTTTCAAAGATCTCGTC 58.435 40.000 11.05 0.00 44.94 4.20
3112 3460 6.531503 TGGATCTAGTTTCAAAGATCTCGT 57.468 37.500 11.05 0.00 44.94 4.18
3113 3461 5.461737 GCTGGATCTAGTTTCAAAGATCTCG 59.538 44.000 8.00 0.00 44.94 4.04
3114 3462 6.344500 TGCTGGATCTAGTTTCAAAGATCTC 58.656 40.000 8.00 4.03 44.94 2.75
3115 3463 6.305272 TGCTGGATCTAGTTTCAAAGATCT 57.695 37.500 8.00 0.00 44.94 2.75
3116 3464 6.765036 TCATGCTGGATCTAGTTTCAAAGATC 59.235 38.462 8.00 4.15 44.88 2.75
3117 3465 6.656902 TCATGCTGGATCTAGTTTCAAAGAT 58.343 36.000 8.00 0.00 35.15 2.40
3118 3466 6.053632 TCATGCTGGATCTAGTTTCAAAGA 57.946 37.500 8.00 0.00 0.00 2.52
3119 3467 5.220815 GCTCATGCTGGATCTAGTTTCAAAG 60.221 44.000 8.00 1.95 36.03 2.77
3120 3468 4.637534 GCTCATGCTGGATCTAGTTTCAAA 59.362 41.667 8.00 0.00 36.03 2.69
3121 3469 4.194640 GCTCATGCTGGATCTAGTTTCAA 58.805 43.478 8.00 0.00 36.03 2.69
3122 3470 3.198417 TGCTCATGCTGGATCTAGTTTCA 59.802 43.478 8.00 0.00 40.48 2.69
3123 3471 3.801698 TGCTCATGCTGGATCTAGTTTC 58.198 45.455 8.00 0.00 40.48 2.78
3124 3472 3.920231 TGCTCATGCTGGATCTAGTTT 57.080 42.857 8.00 0.00 40.48 2.66
3125 3473 3.136077 ACATGCTCATGCTGGATCTAGTT 59.864 43.478 8.00 0.00 42.39 2.24
3126 3474 2.704596 ACATGCTCATGCTGGATCTAGT 59.295 45.455 8.00 0.00 42.39 2.57
3127 3475 3.404224 ACATGCTCATGCTGGATCTAG 57.596 47.619 9.58 0.86 42.39 2.43
3128 3476 3.851458 AACATGCTCATGCTGGATCTA 57.149 42.857 9.58 0.00 42.39 1.98
3129 3477 2.730934 AACATGCTCATGCTGGATCT 57.269 45.000 9.58 0.00 42.39 2.75
3130 3478 2.286831 CGAAACATGCTCATGCTGGATC 60.287 50.000 9.58 0.00 42.39 3.36
3131 3479 1.674441 CGAAACATGCTCATGCTGGAT 59.326 47.619 9.58 0.00 42.39 3.41
3132 3480 1.089112 CGAAACATGCTCATGCTGGA 58.911 50.000 9.58 0.00 42.39 3.86
3133 3481 1.089112 TCGAAACATGCTCATGCTGG 58.911 50.000 9.58 0.20 42.39 4.85
3134 3482 1.465777 TGTCGAAACATGCTCATGCTG 59.534 47.619 9.58 0.00 42.39 4.41
3135 3483 1.812235 TGTCGAAACATGCTCATGCT 58.188 45.000 9.58 0.00 42.39 3.79
3136 3484 2.617250 TTGTCGAAACATGCTCATGC 57.383 45.000 9.58 0.00 42.39 4.06
3156 3504 6.919115 GCATCAAAGTTGGCATCAAAATTTTT 59.081 30.769 0.00 0.00 34.28 1.94
3157 3505 6.263617 AGCATCAAAGTTGGCATCAAAATTTT 59.736 30.769 0.00 0.00 34.28 1.82
3158 3506 5.766174 AGCATCAAAGTTGGCATCAAAATTT 59.234 32.000 0.00 0.00 34.28 1.82
3159 3507 5.310451 AGCATCAAAGTTGGCATCAAAATT 58.690 33.333 0.00 0.00 34.28 1.82
3160 3508 4.901868 AGCATCAAAGTTGGCATCAAAAT 58.098 34.783 0.00 0.00 34.28 1.82
3161 3509 4.339872 AGCATCAAAGTTGGCATCAAAA 57.660 36.364 0.00 0.00 34.28 2.44
3162 3510 5.664294 ATAGCATCAAAGTTGGCATCAAA 57.336 34.783 0.00 0.00 34.28 2.69
3163 3511 6.239092 CCATATAGCATCAAAGTTGGCATCAA 60.239 38.462 0.00 0.00 0.00 2.57
3164 3512 5.242171 CCATATAGCATCAAAGTTGGCATCA 59.758 40.000 0.00 0.00 0.00 3.07
3165 3513 5.242393 ACCATATAGCATCAAAGTTGGCATC 59.758 40.000 0.00 0.00 0.00 3.91
3166 3514 5.010314 CACCATATAGCATCAAAGTTGGCAT 59.990 40.000 0.00 0.00 0.00 4.40
3167 3515 4.338964 CACCATATAGCATCAAAGTTGGCA 59.661 41.667 0.00 0.00 0.00 4.92
3168 3516 4.794003 GCACCATATAGCATCAAAGTTGGC 60.794 45.833 0.00 0.00 0.00 4.52
3169 3517 4.338964 TGCACCATATAGCATCAAAGTTGG 59.661 41.667 0.00 0.00 35.51 3.77
3170 3518 5.503662 TGCACCATATAGCATCAAAGTTG 57.496 39.130 0.00 0.00 35.51 3.16
3171 3519 5.653769 AGTTGCACCATATAGCATCAAAGTT 59.346 36.000 0.00 0.00 40.94 2.66
3172 3520 5.195940 AGTTGCACCATATAGCATCAAAGT 58.804 37.500 0.00 0.00 40.94 2.66
3173 3521 5.762825 AGTTGCACCATATAGCATCAAAG 57.237 39.130 0.00 0.00 40.94 2.77
3174 3522 6.528537 AAAGTTGCACCATATAGCATCAAA 57.471 33.333 0.00 0.00 40.94 2.69
3175 3523 6.828273 ACTAAAGTTGCACCATATAGCATCAA 59.172 34.615 0.00 0.00 40.94 2.57
3176 3524 6.356556 ACTAAAGTTGCACCATATAGCATCA 58.643 36.000 0.00 0.00 40.94 3.07
3177 3525 6.867662 ACTAAAGTTGCACCATATAGCATC 57.132 37.500 0.00 0.00 40.94 3.91
3178 3526 7.442364 CAGTACTAAAGTTGCACCATATAGCAT 59.558 37.037 0.00 0.00 40.94 3.79
3179 3527 6.761242 CAGTACTAAAGTTGCACCATATAGCA 59.239 38.462 0.00 0.00 39.32 3.49
3180 3528 6.761714 ACAGTACTAAAGTTGCACCATATAGC 59.238 38.462 0.00 0.00 0.00 2.97
3181 3529 9.982651 ATACAGTACTAAAGTTGCACCATATAG 57.017 33.333 0.00 0.00 0.00 1.31
3183 3531 9.109393 CAATACAGTACTAAAGTTGCACCATAT 57.891 33.333 0.00 0.00 0.00 1.78
3184 3532 8.098286 ACAATACAGTACTAAAGTTGCACCATA 58.902 33.333 0.00 0.00 0.00 2.74
3185 3533 6.940298 ACAATACAGTACTAAAGTTGCACCAT 59.060 34.615 0.00 0.00 0.00 3.55
3186 3534 6.203915 CACAATACAGTACTAAAGTTGCACCA 59.796 38.462 0.00 0.00 0.00 4.17
3187 3535 6.599437 CACAATACAGTACTAAAGTTGCACC 58.401 40.000 0.00 0.00 0.00 5.01
3188 3536 6.077838 GCACAATACAGTACTAAAGTTGCAC 58.922 40.000 0.00 0.00 0.00 4.57
3189 3537 5.760743 TGCACAATACAGTACTAAAGTTGCA 59.239 36.000 11.22 11.22 0.00 4.08
3190 3538 6.236017 TGCACAATACAGTACTAAAGTTGC 57.764 37.500 0.00 1.42 0.00 4.17
3191 3539 7.861630 AGTTGCACAATACAGTACTAAAGTTG 58.138 34.615 0.00 1.73 0.00 3.16
3192 3540 8.446599 AAGTTGCACAATACAGTACTAAAGTT 57.553 30.769 0.00 0.00 0.00 2.66
3193 3541 8.446599 AAAGTTGCACAATACAGTACTAAAGT 57.553 30.769 0.00 0.00 0.00 2.66
3206 3554 9.502145 CACGATGTATTATTAAAGTTGCACAAT 57.498 29.630 0.00 0.00 0.00 2.71
3207 3555 7.483375 GCACGATGTATTATTAAAGTTGCACAA 59.517 33.333 0.00 0.00 0.00 3.33
3208 3556 6.964370 GCACGATGTATTATTAAAGTTGCACA 59.036 34.615 0.00 0.00 0.00 4.57
3209 3557 6.964370 TGCACGATGTATTATTAAAGTTGCAC 59.036 34.615 0.00 0.00 0.00 4.57
3210 3558 7.078011 TGCACGATGTATTATTAAAGTTGCA 57.922 32.000 0.00 0.00 0.00 4.08
3211 3559 7.696453 AGTTGCACGATGTATTATTAAAGTTGC 59.304 33.333 0.00 0.00 0.00 4.17
3212 3560 9.554724 AAGTTGCACGATGTATTATTAAAGTTG 57.445 29.630 0.00 0.00 0.00 3.16
3217 3565 9.900710 ACAAAAAGTTGCACGATGTATTATTAA 57.099 25.926 0.00 0.00 38.39 1.40
3219 3567 9.900710 TTACAAAAAGTTGCACGATGTATTATT 57.099 25.926 0.00 0.00 38.39 1.40
3220 3568 9.900710 TTTACAAAAAGTTGCACGATGTATTAT 57.099 25.926 0.00 0.00 38.39 1.28
3221 3569 9.731819 TTTTACAAAAAGTTGCACGATGTATTA 57.268 25.926 0.00 0.00 38.39 0.98
3222 3570 8.635877 TTTTACAAAAAGTTGCACGATGTATT 57.364 26.923 0.00 0.00 38.39 1.89
3223 3571 8.810652 ATTTTACAAAAAGTTGCACGATGTAT 57.189 26.923 0.00 0.00 38.39 2.29
3224 3572 8.276060 GATTTTACAAAAAGTTGCACGATGTA 57.724 30.769 0.00 0.00 38.39 2.29
3225 3573 7.160633 GATTTTACAAAAAGTTGCACGATGT 57.839 32.000 0.00 0.00 38.39 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.