>input_sequence_56396
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-----------------------------ATGATCCACCAAGCTATACTTATAATGC-----------------------
------------------ATATGCCCATGCAGGTTCTCGACTTTGCTGCTTTCTCTGAACCTGAATACGATCTTCCTATA
TTTTGTGCCAACGCTTTTACGACTCCTGCACAGAGTATCGTTGTCTTGTAAGTGCCATGATATGTA-TGCCATTCAAGAC
TTATTTACTATGGTTAAACTAGAATATGAATAATGGCCTGAAAGAACTATTTGAATTACTTGCAGGGACCTCAATCCGCT
ATACGATATAACTGAAGACAAGGATTACAAAGATAAATACTACAGGAATTTGATGCCCCTTATGCAGAAGTATAGTGAGG
TACTTGGATCTTATCCTTCACCCAAATG-CATTACCCCAGTCTTTTTCTATTAGCTTTATACATAGAGTGTTATCTTTAT
TTAGAGAAAATGCAGCTTCTGCCATGGGGTGGCAAGATTACGAGCGAATCTCTGAGATTCTTCTCTCCAATCGTGATCTG
GACTATATTTGAGCCCACTGAACGCAACCATCATGTTCTATATTCAGCTTTGCTGGATTACTATAAGGTATTCA-CGATT
GCTTTATTAAATTTCTGAACTGTTGTGCCAGACATGCAATTTCAAGTATCATGCTCT--GTTTTCTCATGTTTCTGATGA
CGCAGGTTTGGCTTCAGTTAACGGATCAAGCAACTGAAGAGAATGACACAACGAAAGTTGTTCGTAACAGAGAAGCGCAA
CATAGATATCTCACATGGAGGGCTGAAAAGGTTTGTATTTTTCATAAAACCCATGCGGAGAAAGTTATATTCATTGACT-
---ATTTGTCATTACACTGTTACTTGCGCCAAATTAGGACTGC-CATTAGATATTATCATTTGTTAAAGCAGCTGCCACA
GAGCATCTTCCACTAATGTCGTGCCTTGTCTATGGGTAGGATCCTGGGTTTCCACTTCTGAAGAAGTTGATTGGTGAAAG
CCATGCCAAGGTTTCTCTTCCTGCGATATTCACTATATTTAGTTATTTACACACACCCAATTCATGTTATTTGCAGAGTT
ACTTATTGCTTTGATATTCAGGATTTGGTGACGGAGTTCCTGTTCGAAGGAGTGTATTCTCTTGGAAGTAAATCTTTCCT
GGACTATTTCCCCGAGTACGCGCGTGACGACGGGACAGTAAACAAGAAGAGGAGTATGATCGGGAAATCTTTCGAAGCTA
GGCCTTGGGATGCTACCGGAGAATTCATTGGTGGCAAGGATGCAGGATGA------------------------------
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>chr3A_1_TraesCS3A01G488500
TGGAGCAGACCCGCCTCCGCACCGCCCTCACACCCCACCCCTCGCAGGTTGGTTCATGTCCTACTGCTTCCCTTCCCTTG
CTCGCCTTGCTGAGCTCCCTGTTCCTCTTTCCTTGC-------CACCTTGCAATGTCCTGGTTCGGTTCACGCTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCTGTAACTTCATACAGGTGTCGATGCTAGCCCGTTAGC-----
------TCCACGAATTCAGATGCGCCTGCTAACTGAAAATTCAGTCTATAACAGAGAAGCAAAATCAGTACTGTTGTGAT
GTCGCACTAGTGCCGGCTGAATTTCGGTGCTT------GGTCTTTGTCTGACGCCCAGGATC--------------T--C
CTGTAAACAATGACCCCAAGCACGAGCCTTATTTCTTCAGATAT---ACTTATAATTATTGACTAGTTAAGCCGT----T
GAGGGTCAGTCTCCGAGTCTGGTATAGGCAT-------TTTTTTTATGCAATTGTCCATCTAGAACATCTTAAAGTGTAG
GTATCCTGTG---ATGTCGGCTGACGCCAGTCACATTTGTCATT-ACAGAAGATGATTTTGTCCTGTGTCATGCTCCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCTGCTGTTTTGGACGCTCTCTCCTTGAGTGCCCCCAAGATCAGACT
GCTTCGCAGCTTGACAGTTGAGAAGAAAAACTCGGTTCAGGTACTTCATCTCCAAGT-------TCACTTGTCCAAAACC
CTCCAACAACTATCCCAGAAGGCTATGAACTGAAAGATGGGTGTACATGTGAAGTTGATTATATCTGAATATTACAGCTT
TAATTTGTTCTATCTGATTACATCTGAAGTTCCATAATATTACAGGTTTCATTTGTTCTATGAATATCGTACAGTCGAAT
CAGTGGTGATATTTTCCTTTTGAAATCTCTTATCTCTGTTT----CATCACTCAGTTTATGACTGAAGGGACAAGGGAGT
GTCATTGAGGATTTCATTTATCGAGGCTTATGATCCACCAAGCTATACTTATAATGC-----------------------
------------------ATATGCCCATGCAGGTTCTCGACTTTGCTGCTTTCTCTGAACCTGAATACGATCTTCCTATA
TTTTGTGCCAACGCTTTTACGACTCCTGCACAGAGTATCGTTGTCTTGTAAGTGCCATGATATGTA-TGCCATTCAAGAC
TTATTTACTATGGTTAAACTAGAATATGAATAATGGCCTGAAAGAACTATTTGAATTACTTGCAGGGACCTCAATCCGCT
ATACGATATAACTGAAGACAAGGATTACAAAGATAAATACTACAGGAATTTGATGCCCCTTATGCAGAAGTATAGTGAGG
TACTTGGATCTTATCCTTCACCCAAATG-CATTACCCCAGTCTTTTTCTATTAGCTTTATACATAGAGTGTTATCTTTAT
TTAGAGAAAATGCAGCTTCTGCCATGGGGTGGCAAGATTACGAGCGAATCTCTGAGATTCTTCTCTCCAATCGTGATCTG
GACTATATTTGAGCCCACTGAACGCAACCATCATGTTCTATATTCAGCTTTGCTGGATTACTATAAGGTATTCA-CGATT
GCTTTATTAAATTTCTGAACTGTTGTGCCAGACATGCAATTTCAAGTATCATGCTCT--GTTTTCTCATGTTTCTGATGA
CGCAGGTTTGGCTTCAGTTAACGGATCAAGCAACTGAAGAGAATGACACAACGAAAGTTGTTCGTAACAGAGAAGCGCAA
CATAGATATCTCACATGGAGGGCTGAAAAGGTTTGTATTTTTCATAAAACCCATGCGGAGAAAGTTATATTCATTGACT-
---ATTTGTCATTACACTGTTACTTGCGCCAAATTAGGACTGC-CATTAGATATTATCATTTGTTAAAGCAGCTGCCACA
GAGCATCTTCCACTAATGTCGTGCCTTGTCTATGGGTAGGATCCTGGGTTTCCACTTCTGAAGAAGTTGATTGGTGAAAG
CCATGCCAAGGTTTCTCTTCCTGCGATATTCACTATATTTAGTTATTTACACACACCCAATTCATGTTATTTGCAGAGTT
ACTTATTGCTTTGATATTCAGGATTTGGTGACGGAGTTCCTGTTCGAAGGAGTGTATTCTCTTGGAAGTAAATCTTTCCT
GGACTATTTCCCCGAGTACGCGCGTGACGACGGGACAGTAAACAAGAAGAGGAGTATGATCGGGAAATCTTTCGAAGCTA
GGCCTTGGGATGCTACCGGAGAATTCATTGGTGGCAAGGATGCAGGATGAGATCTTTAGCTGTAGGACCTGCTCGAGC-A
TCCTTCGGGTTTTCCTGAATTCGCCAT------------GAGAATTCATCGGTGGTGAGGATGCATGATGAGATCTCTTG
GAGTAAGATCCACATGGGCATTCTTAGGGTTTTGCTGAGCTCCTAGCGACAATCAGTATCGCGACGCTCTTGCTTCTCAG
GATTCATTTTTAACGTTCTTCGTTACACGCTGCCCGGGCTACTTTGTATCCTTTGTAATTTCATCTGAAGGGTCTGTGTA
GCTTAG-ACAATGTGTGTAAATATTTGATTGG------------------------------------------------
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---GTGCAATGTCAATAATAACTTACACTGATATC--ATATACTGGTCATCTATTTGTGAGGAAATACAGGTCCAACATA
GGGCAGAAACCAGCAGCCGTCGTGCAGAATCAGGCTGCCGTCAGAAATAGGCAAATCCGATGAAAAAAATGTGTAAGGAG
TGGCGAAGCGAGGGCAATGTTAGAAAGTTGAAAAAACGTGTAACATGACGAAAGTTGGGGAGCTCGTATTCAGTTCGGCG
CCGCGAACGTCAACCGGCGCCTACAGCAAAGCCAAGTGGGCCGGCCCACGAATGCACCAGCGCGGAAGCTGTTTTCGTGG
AAAAAGTTTCTAAAATCTAAAAAGCGCATACGCACTATTTTGTTGAATGGAGCGGCCGCGTTTCACATGCATGTGGCTGT
TAATTTTTTCGTCTTCTAATGCATGTGGCTGTTAGCATTAAACGTGTTCACACTGATTACTCCATTTCGAACTGAACGGA
TCCACGCATATTCATTTCAGAGTTTTAAATTTTAAAAAGTCATATCTTTCAAACCGCGCGTCGGAATTCAGATCTGTTTT
CACTGCTGGAACTCTTGCGACGAGATCTTTGAAACTAGATCCAGCATGAGCATGTTTCGACAAAAAAATTTTGATGCCAA
CTTTGATGCTATATGGTGCAACTTTAGTACTGTATTGTGCAACTTTAATAATACATCGTGCAACTTTTTGTAAAATC
>chr3D_1
TGGAGCAGACCCGCCACCGCACCGCCCTCACGCCACACCCCTCGCAGGTTGGTTCCTG--CTACTACTG--CTTCCCTTG
CTCGCCTTGCTGAGCTCCCTGTTCCTCTTTCCTTGCGACCTTGCAACTTTGCAAGTCCAAGCTCGGGACACGCTGCGCCG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCTGTAACTGCATATTGGTGCCCATGCTAGCACAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCCCGCTAATTGAAAATTCAGTCTAAAACAGAGAAGCAGAATCACTGCTGTTGTGCT
GTCGCGCTAGTACCAGCTGAATTTCGGTTCTT------GGTCTTTGTCTGACGCCCTGGGGTGGACTCTGAACGAAT--C
CTGTAAACAACGACCCCAACCACGAGCCTCATTTCTTCAGATAC---AT----AATTGTTGACTACTTAAGGCCTTGAG-
---GGTCAGTCT-AGAGTCTGGTATAGGCAT-------TTTTTTAATGCAATTGCCCATCTAGAACATCTTAAAGTGTAG
GTCTCCTGTAACAATGTCAGCTGACGCCAGTCATATTTCTCATT-ACAGAAGATGACTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCTGCTGTTTTGGATGCTCTCTCATTCACCGCCCCCAAGATCAGACT
GCTTCGCAGCTTGACAGTTGAGAAGAAAAACTCGGTCCAGGTACTTCATCTCCAAGTCCAAAGTTCCCTTGACCAAAACC
CTCCAACAACTATCCTGAAAGGCTATGAACTGAAAGATAGGTTTACATCTGAAGTTGATTATATCTGAATATTACAGCTG
CAGTTTGTTCTATCTGATTATATCTGAAGTTCCATAATATTACAGGTTTTATTTGTTCTATGAATATCGTACAGTCGAAC
CAGTGGTGATATTTTCCTTTTAAAATCTCTTATCTTTGTCTAAAACATCATTCAGTTTATGACTGAAGGAACAAGGGAGT
GTCCTGGAGGATTTTATTTATCAAGGCATATGATCCACAAAGCTATACTTATAATGC-----------------------
------------------ATATGCCCATGCAGGTTCTAGACTTTGCTGCTTTCTCTGAACCTGAATACGATCTTCCAATA
TTTTGCGCCAACGCTTTTACTACTCCTGCACAGAGTATTGTTGTCTTGTAAGTGTCATGATATGTAATGTCATTCAAGAC
TTAATTACTGTGCTTAAACTAGAATATGAATAATGGCCTGAATGAACTATTTGAATTTCTTGCAGGGACCTCAATCCGCT
ATACGATATCACTGAAGACAGGGATTACAAAGATAAATACTACAGGAATTTGATGCCTCTTATACAGAAGTATAGTGAGG
TACTTGGATCTTATCCTTCACCCAGATG-TATTACCCCAGTCTTCTTCTATTAGCTTTATACACAGAGTGTTATCTTTAT
TTAGAGAAAATGCAGCTTCTGCCATGGGGTGGCAAGATTACGAGCGAATCTCTGAGATTCTTCTCTCCAATCGTGATCTG
GACTATATTTGAGCCCACTGAACGCAACCATCATGTTCTGTATTCAGCTTTGATGGATTACTATAAGGTATTCA-CGATT
GCTCTGTTAAATTTTTAAACTGTTGTGCCAAACATGCAATTCCAAGTATCATGCTCTTTGTTTTCTCATGTTTCTGACGA
CGCAGGCTTGGCTTCAGTTAACGGATCAAGCGGCTGAAGAAAATGACAAAACAAAAGTTGTTCGTAACAGAGAAGCGCAA
CATAGATATCTCACATGGAGGGCTGAAAAGGTTTGTATTTTTCA--AAAACCATGCACAGAAAGTTATATTGATTGACTA
GTGATTTATCATTACACTGTTACCTGCGCCAAATTAGGACTGCTCATTAGATATTATCATTTGTAAAACCAGCTGCTACA
GAGCATCTTCCACTAACTTCGTGCCTTGTCTATGGGCAGGATCCTGGGTTTCCACTTCTGAAGAAGTTGATTGGTGAAAG
CTATGCCAAGGTTTCTCTTCTGCCAACATTCACTAT--------ATTTACACACACCCAATTCATGTTATTTGCAGAGTT
ACTTGTTGCTTTGATATTCAGGATTTGGTGACTGAGTTCCTGTTCGAAGGAGTGCATTCTCTTGGAAGTAAATCTTTCCT
GGACTATTTCCCCGAGTACGCGCGTGACGACGGAACAGTAAACAAGAAGAGGAGTATGATTGGGAAATCTTTCGAAGCTA
GGCCTTGGGATGCTACCGGAGAATTCATTGGTGGCAAGGATGCAGAATGAGATCTTTAGCTGTAGGATCTGCACGAGCAA
TCCTTCGGGTTTTCCTGAATTCGCCTTGGGATGCTACCAGAGAATTCATTGGTGGTGAGGATGCATGATGAGATCTTTTG
CAGTAGGATCCACATGGGCATTCTTAGGGTTTTGCTGAGCTCCTAGCGACAATCATTTTCGTGACCCTCTTGCTTCTCAG
GTTTCA-TTTTAACATTCTTCGTTACACGCTGTCCGGGCTACTTTGTAT-CTTTGTAATTTCATCTGAATGGTCTGTGTA
GCTTAAAAAAACTTGTGT-AATATTGGATTGG------------------------------------------------
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---GTGCAATATCAATAGTAACTTAGACTGATATTATATATATCCGTCACCTAGTTGTGAGAAAATACAGATGCAACATA
GGGTAGAAACCAGCAGCCGTCGTGTATAAACAGGC---------------------------------------------
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>chr3B_1
TGGAACAGACCCGCCTCCGCACCGCCCTCACGCCCCACCCCTCGCAGGTAGGTTCCTG--CTGCTACTG--CCTCCCTTG
CTCGCCTTGCTGAGCTCCATGTTCCTCTTTCCTTACAACCTTGCAGAGTCCTA----CTAGTTCGGTACACGCTGCGCCG
GCGAGCATGCTCTGTCTGCTCGAGGTGGCTAGCAAAGCTGTAACTGCATACTGGCGTCCATGCTAGGCCAGCCCGTTAGG
CAGGTGTCCACGAATGCAGATGCGCCTGCTAATTGTAAATTCAGTCCAAAACAGAGAAGCAAAACCACTGCTGTTGTGAT
GTCGCGCTAGTGCCGGCTGAATTTCGGTGCCT------GGTCTTTGTCTGACGCACTAGGGTGGAGTCTGAACGGATCTC
CTGTAAACAATGACCCCAAGCACGAGCCTTATTTCTTCAGACATACTAT----AATTGTTGACTAGTTAAGGCCTTGACG
GTCAGT-----CTAGAGTCTGGTATAG--------------------GCAAATGTCCATCTAGAACATCTTAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGCCATATTTTTCATT-ACAGAAGATGATTTTGTAATGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCTGCTGTTTTGGACGCTCTCTCATTCAGCGCCCCCAAGATCAGACT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTCGGTTCAGGTACTTCACCTCCAAGCCCAAAGTTTCCTTGACCAAAACC
CTCCAACAACTATCCCAAAAGGCTATGAATTGAAAGATGGGTTTACATCTGAAGTTGATTATATCTGAA-----------
----------------------------GTTCCATAATATTACAGGTTTGATTTGTTCTATGAATATCTTACAGTCGAAT
CAGTGCTGATATTTTTCTTTTGAGATCTCTTATCTCTGTCTAAAACATCACTCAGTTTATGACTCAAGGGACAAGGGAGT
GTCATTGAGGATTTCATTTATCGAGGCATATGATCCACAAAGCTATACTTATAATGTTACCCCGCAAAAAAGAAGAAGAA
GATATACTTACAATGCATATATGCCCGTGCAGGTTCTTGACTTTGCTGCTTTCTCTGAACCTGAATATGATCTTCCTATA
TTTTGCGCCAACGCTTTTACGACTCCTGCACAGAGTATCGTTGTCTTGTAAGTGTGATGATATGTAATGCCATTCAAGAC
TCAGCTACTGCGCTTAAACTAGAATATGAATAATTGCCTGAAAGAACTATTTGAATTACTTGCAGGGACCTCAATCCGCT
ATACGATATAACTGAAGACAAGGATTACAAAGATAAATACTACAGGAATTTGATGCCTCTTATACACAAGTATAGTGAGG
TGCTTGGATCTTATCCTTCACCCCAAATATATTACCCCAGTCTTCTTCTATTAGCTTTATACATAGAGTGCTATCTTTAT
TTAGAGAAAATGCAGCTTCTGCCATGGGGTGGCAAGATTACGAGCGAATCTCTGAGATTCTTCTCTCCAATCGTGATCTG
GACTATATTTGAGCCCACTGAACGTAACCATCATGTTCTGTATTCAGCTTTGATGGATTACTATAAGGTATGCACCGATT
GTTTCATTAAATTTCTGAAATGTTGTGCCAAACATGCAATTTCAAGTATCATGCTCCCTGTTTTCTCATGTTTCTGCCGA
CGCAGGTTTGGCTTCAGTTAACGGATCAAGCAACTGAAGAAAATGACACAACGAAAGTTGTTCGTAACAGAGAAGCGCAA
CATAGATATCTCACATGGAGGGCTGAAAAGGTTTGTATTTTTCATAAAACCCATGCAGAGAAAGTTATATTCATTGACTA
GTGATTTGTCATTACACTGTTACTTGCGCCAAATTAGGACTGCCCATTAGATATTATCATTTGTTAAAGCAGCTGCTACA
GAGCATCTTCCACTAATGTCGTGCCTTGTCTATGGGCAGGATCCTGGGTTTCCACTTCTGAAGAAGTTGATTGGTGAAAG
CCATGCCAAGGTTTCTCTTCTGGCGATATTCACTAA--------ATTTACACACACCCAATTCATGTTATTTGTAGAGTT
GCTTATTGCTTTGATATTCAGGATTTGGTGACTGAGTTCCTGTTCGAAGGAGTGCATTCTCTTGGAACTAAATCTTTCCT
GGACTATTTTCGCGAGTACGCATGTGACGACGGGACAGTAAACAAGAAGAGGAGTATGATCGGGAAATCTTTCGAAGATA
GGCCTTGGGATGCTACGGGAGAATTCATTGGTGGCAAGGATGCAGGATGAGATCTTTT----------------------
-----------------------------------------------------------GATGCAGGATGATATCTTTTG
CAGTAGGATCCACATGGGCATTCTTAGGGTTTTGCTGAGCTCCTAGCGAT--------TCACGGCGCTCTTGCTTCTCAG
GTTTCA-TTTTAACGTTCTTCGTTACACGCTGTCCGGGCTAATTTGCAT-CCATGTAATTTCATCTGAGTTCTCTGTGTA
GCTTAG-AAAACATGTGT-AATATTTGATTGACCCTGATAAGTTTTTATGGCAAGTTTAGCGACGCGAGAATGGCAACTT
TAGTTGTCAAGCAAGTCAACTTCTTTTCGGATGGTAAGTTTTAGTTTTTTTTCGGGTTTGTTTTTTTCAATTTGGATAGC
AACTTTAATTGTAAAAAAAATATCAGGGCCGGAGTGCTTCGTGCTACACGTGTGGCACTTATCATTTGGGTATATTAAAT
TGAGTGCATTATCAATAATACCTTGCAGTGATATTATAC--ACTGGTCACCTATTTGTGAGGAAATACAGGTCCAACATT
GGGCAGAAACCAGCAGCCGTCGTGCAGAATGACGCTGCCGCCAGAAACAGGCAAATCCGATGAAACAAACATG-------
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>chr7D_1
TGGAGCAGACCCGCCTCCGCACCGCCCTCACGCCCCACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCTGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACACTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCCGTAACTGCATACTGGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCCTGCTAACTGAAAATTTAGTCTAAAACAGAGGAGCAAAACCAGTACTGTTGTGAT
GTCGCACTAGTGCCAGCTGAATTTCGGTGCAATATTCAGGTCTTTGTCTGAAGCACGAGCGTCATT--------------
----------------------------TCATTTCTTCAGATAT---ATAATCAATTGTTGACTACTTAAGGCTTTGAGT
GAGGGTCAGTCTCCGAGTCTGGTATAGTGGTATAGGCATTTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGTCACATTTGTCATTCACAGAAGATGATTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTTTTGGATGCTCTCTCCTTCAGCGCTCGTAAAATTAGACT
GCTTCACAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCCAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGCTGCTTATATCTGAATATTACAGCTG
CAGTTTGTTCT---------------------------------------------------------------------
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>chr5D_1
TGGAGCAGACCCGCCTCCGCACCGCCCTCACGCCAAACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCTGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTTGGTACACGCTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCCGTAACTGCATACTGGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCCTGCTAACTGAAAATTTAGTCTAAAACAGAGGAGCAAAACCAGTACTGTTGTGAT
GTCGCACTAGTGCCAGCTGAATTTCGGTGCAATATTCAGGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCATTTCTTCAGATAT---ATAATCAATTGTTGACTACCTAAGGCTTTGAGT
GAGGGTCAGTCTCCGAGTCTGGTATAGTGGTATAGGCATTTTTT--TGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGTCACATTTGTCATTCACAGAAGATGATTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTTTTGGATGCTCTCTCCTTCAGCGCTCGTAAAATTAGACT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCCAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAAGCTATGAACTGAAATATAGGTTTACATGTGAAGCTGCTTATATCTGAATATTACAGCT-
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>chr6D_1
TGGAGCAGACCCGCCTCCGCACCGGCCTCACACCCCACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCTGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACGCTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCCGTAACTGCATACTGGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCCTGCTAACTGAAAATTTAGTCTAAAACAGAGGAGCAAAACTAGTACTGTTGTGAT
GTCGCACTAGTGCCAGCTGAATTTCGGTGCAATATTCAGGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCCTTTCTTCAGATAT---ATAATCAATTGTTGACTACTTAAGGCTTTGAGT
GAGGGTCAGTCCTCGAGTCTGGTATAGTGGTATAGACA-TTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGTCACATTTGTCATTCACACAAGATGATTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTCTTGGATGCTCTCTCCTTCAGCACTCGTAAAGTTAGACT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCGGGTACTTCATCTCCAAGTCCAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGCTGCTTATATCTGAATATTACAGCT-
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>chr1D_1
TGGAGCAGACCCGCCTCCGCACCGCCCTCACGCCCCACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCTGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACGCTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCCATAACTGCATACTGGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTATCCACGAATTCAGATGCGTCTGCTAACTGAAAATTTAGTATAAAACAGAGGAGCAAAACCAGTACTGTTGTGGT
GTCGCACTAGTGGCAGCTGAATTTCGGTGCAATATTCAGGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCATTTCTTCAGATAT---ATAATCAATGGTTGACTACTTAAGGCTTGGAGT
GAGGGTCAGTCTCCGAGTCTGGTATAGTGGTATAGGCA-TTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAG-CACATTTGTCATTCACAGAAGATGATTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTCTTTTGGATGCTCTCTCCTTCAGCGCTCGTAAAATTAGACT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCCAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGCTGCTTATATCTGAATGTTACAGCT-
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>chr2D_1
TGGAGCAGACCCTCCTCCACACCGCCCTCATGCCCCACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCCGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACGCTGCGCTG
GCTAGCATGCTCTGTCTGCTCGAGGTGATTAGCAAAGCCGTAACTGCATACTGGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCCTGCTAACTAAAAATTTAGTCTAAAACAGAGGAGCAAAACCAGTACTGTTGTGAT
GTCGCACTAATGCCAGCTGAATTTCGGTGCAATATTCAGGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCATTTCTTCAGATAT---ATAATCAATAGTTGACTACTTAAGGCTTTGAGT
GAGGGTCAGTCTCCGAGTCTGGTATAGTGGTATAGGCATTTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGTCACATTTGTCATTCACAGAAGATGATTTTGTCCTGTGTCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTTTTGGATGCTCTCTCCTTCAGCGCTCGTAAAATTAGAGT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCCAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGCTACTTATATCTGAATATTACAGCTG
CAGTTTGTTCT---------------------------------------------------------------------
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>chr4A_1
TGGAGCAGACCCACCTCCGCACCGCCCTCATGCCCCACCTCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCTGAGCTCCCTGCTCCTGTTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACGCTGCGCTG
GCGAGCATGCTCTGTCTGCTCGAGGTGACTAGCAAAGCCGTAACCACATACTAGTGTCCATGCTAGCCTAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCGCGTGATAACTAAAAATTCAGTCTAAAACAGATGAGCAAAACCAGTGCTGTTGTGAT
GTCGCACTAGTGCCAGATGAATTTTGGTGCCT------GGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCATTTCTTCAGATAT---ATAATCAATTGTTGACTACTTAAGGCTTTGAGT
GAGGGTCAGTCTCCGAGTCTGGTATAGTGTTATAGGCA-TTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTT---ATATCAGCTAACGCCAGTCACATTTTTCATTCACAGAAGATGATTTTGTCCTGTATCATGCTTCCAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTTTTGGATGCTCTCTCCTTCAGCGCTCTCAAAATTAGACT
ACTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCGAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGCTGCTTATATCTGAATATTACAGCT-
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>chr6B_1
TGGAGCAGACCCGCCTCCGCACCGCCCTCACGCCCCACCCCTCGCAGGTTGGTTCATGTCCTACTACTTCCCTT----TG
CTCGCCTTGCCGAGCTCCCTGCTCCTATTTCCTTGC-------CACCTTGCAATGTCCTAGCTCGGTACACGCTGCGCTG
GCAAGCATGCTTTGTCTGCTCAAGGTGACTAGCAAAGCCGTAACCGCATACTAGTGTCCATGCTAGCCCAGCCCGTTAGG
CAGGTGTCCACGAATTCAGATGCACCTGATAACTGAAAATTCGGTCTAAAACAGAGGAGCAAAACCAGTACTGTTGTGAC
GTCGCACTAGTGCCAGATGAATTTTGGTGCCT------GGTCTTTGTCTGAAGCACGAGCCTCATT--------------
----------------------------TCATTTAATCAGATAT---ATAATCAATTGTCCATCTCC---------GAGT
GAGGGTCAATCTTCGAGTCTGGTATAGTGGTATAGGCATTTTTTTATGCAATTGTCCATCTAGAACATCATAAAGTGTAG
GTCTCCTGTG---ATATCAGCTGACGCCAGTCACATTTGTCATTCACAGAAGATGATTTTGTCCTGTGTCATGCTTCTAG
GAAAAGTTCAGGCTCATACGAGCCAACGACGATGCGACTGTTTTGGATGCTCTCTCCTTCAGCGCTCTCAAAATTAGACT
GCTTCGCAGCTTGACGGTTGAGAAGAAAAACTATGTTCAGGTACTTCATCTCCAAGTCGAAAGTTTCCTTGACCAAAACC
CACCAACAATTATCCCAAAAGGCTATGAACTGAAATATAGGTTTACATGTGAAGTTGCTTATATCTGAATATTACAGCT-
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>SNPs
-----------------------------------------------------------------S--------------
-----------------------------------------------------------S-------S------------
---------------------------------------------S-----S------S----------SSSSSS-----
------------------------------------------------S-------------------------------
--------------------------------------------------------S--SSS------------------
------------------------------------------------SSSSS----S-------------S-S------
--------------------------------------------------------------------------------
--S---------------S--------------------------------------------------------S----
-----------------------------------------------------------S--S-----------------
------------------------------------------------------------------S----S--------
-----------------S------------------------S------------------------------------S
S-S-----------------S----------------------------S------------------------------
---------------------------------------S----------------------------------------
---------------------------S----------S-----------------------------------------
-------------------------------------S------------------------------------------
-----S------------------------------------------------S-------------------------
---S-----S--S-------------------------------------------------------------------
---------------------------------------------------------S-----S----------------
-----------------------------S--------------S-----------------------------------
--------------------------------------------------------------------------------
---------------------------------------S------------S---------------------------
------------------------------S----------------------------------------------S--
----------------------------------------S---------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------------------------S---
------------------------------------S-------------------------------------------
--------------------SS--------------SSSSSSSS------------------------------------
--------------------------------S---------------------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S----S-------
-------------------------S-----------------------S--------------------------S---
S----S-------------------------------------------------S-S----------------------
-S----S-------------------------S----------------S-------------------S----------
--------S--SS-----S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------------S--------------S------------------------------
----------------------------------------S------S-----------------S---SS--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_381
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-----------------------------------------CTTTGTCTGACGCCCAGGAT-------------------
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>reverse_2450
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-------------------------------------------------CGGTGGTGAGGATGCATGAT-----------
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-----------------------------------------------------------------------------
