Multiple sequence alignment - TraesCS3A01G487500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G487500 chr3A 100.000 3144 0 0 592 3735 715277963 715281106 0.000000e+00 5806.0
1 TraesCS3A01G487500 chr3A 100.000 135 0 0 1 135 715277372 715277506 2.230000e-62 250.0
2 TraesCS3A01G487500 chr3D 89.079 2683 151 54 626 3211 580087972 580090609 0.000000e+00 3201.0
3 TraesCS3A01G487500 chr3D 86.053 337 27 8 3405 3732 580090622 580090947 9.930000e-91 344.0
4 TraesCS3A01G487500 chr3B 86.372 2737 188 75 608 3228 774949035 774946368 0.000000e+00 2817.0
5 TraesCS3A01G487500 chr6B 82.560 797 60 37 2253 3006 234921801 234922561 2.450000e-176 628.0
6 TraesCS3A01G487500 chr6B 80.891 539 49 27 2397 2907 334782893 334782381 3.520000e-100 375.0
7 TraesCS3A01G487500 chr6B 83.457 405 38 18 2397 2798 529052999 529053377 2.130000e-92 350.0
8 TraesCS3A01G487500 chr6D 81.077 650 51 27 2397 3003 10407904 10407284 1.580000e-123 453.0
9 TraesCS3A01G487500 chr6D 94.286 105 5 1 2225 2328 10408036 10407932 3.860000e-35 159.0
10 TraesCS3A01G487500 chr6D 80.702 171 22 7 3227 3395 453197348 453197187 5.070000e-24 122.0
11 TraesCS3A01G487500 chr6A 84.901 404 35 10 2397 2798 11905854 11905475 5.850000e-103 385.0
12 TraesCS3A01G487500 chr5A 79.766 598 50 26 2452 3005 80937716 80937146 5.890000e-98 368.0
13 TraesCS3A01G487500 chr5A 81.250 176 19 9 3224 3395 678231977 678232142 3.030000e-26 130.0
14 TraesCS3A01G487500 chr5A 95.122 41 1 1 2225 2264 81081195 81081155 3.110000e-06 63.9
15 TraesCS3A01G487500 chr4B 80.112 538 56 21 2397 2907 47130881 47131394 1.650000e-93 353.0
16 TraesCS3A01G487500 chr4B 79.406 539 57 24 2397 2907 175062682 175062170 7.730000e-87 331.0
17 TraesCS3A01G487500 chr4B 87.671 73 5 2 2933 3005 47131395 47131463 8.600000e-12 82.4
18 TraesCS3A01G487500 chr2A 87.218 133 11 4 3264 3395 663327451 663327578 3.010000e-31 147.0
19 TraesCS3A01G487500 chr2D 86.232 138 12 3 3258 3395 409579331 409579201 3.890000e-30 143.0
20 TraesCS3A01G487500 chr1D 83.333 162 16 5 3234 3395 473449207 473449057 5.030000e-29 139.0
21 TraesCS3A01G487500 chr7B 84.892 139 15 5 3257 3395 328553411 328553543 6.510000e-28 135.0
22 TraesCS3A01G487500 chr4A 82.424 165 18 7 3235 3395 35878118 35877961 2.340000e-27 134.0
23 TraesCS3A01G487500 chr5B 81.481 162 20 6 3235 3395 702029171 702029019 1.410000e-24 124.0
24 TraesCS3A01G487500 chr5B 81.481 162 21 6 3235 3395 702071306 702071153 1.410000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G487500 chr3A 715277372 715281106 3734 False 3028.0 5806 100.0000 1 3735 2 chr3A.!!$F1 3734
1 TraesCS3A01G487500 chr3D 580087972 580090947 2975 False 1772.5 3201 87.5660 626 3732 2 chr3D.!!$F1 3106
2 TraesCS3A01G487500 chr3B 774946368 774949035 2667 True 2817.0 2817 86.3720 608 3228 1 chr3B.!!$R1 2620
3 TraesCS3A01G487500 chr6B 234921801 234922561 760 False 628.0 628 82.5600 2253 3006 1 chr6B.!!$F1 753
4 TraesCS3A01G487500 chr6B 334782381 334782893 512 True 375.0 375 80.8910 2397 2907 1 chr6B.!!$R1 510
5 TraesCS3A01G487500 chr6D 10407284 10408036 752 True 306.0 453 87.6815 2225 3003 2 chr6D.!!$R2 778
6 TraesCS3A01G487500 chr5A 80937146 80937716 570 True 368.0 368 79.7660 2452 3005 1 chr5A.!!$R1 553
7 TraesCS3A01G487500 chr4B 175062170 175062682 512 True 331.0 331 79.4060 2397 2907 1 chr4B.!!$R1 510
8 TraesCS3A01G487500 chr4B 47130881 47131463 582 False 217.7 353 83.8915 2397 3005 2 chr4B.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.108424 ACATCACCGCTCTCAGCTTC 60.108 55.0 0.0 0.0 39.60 3.86 F
728 729 0.177373 GGGACGGGGTGAACTGTATC 59.823 60.0 0.0 0.0 0.00 2.24 F
2034 2107 0.318120 CCAAGGTGATGGTGGTTTGC 59.682 55.0 0.0 0.0 35.65 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1561 1.216710 GCAGAGGTCGAGGAAGTGG 59.783 63.158 0.0 0.0 0.0 4.00 R
2473 2546 0.905357 AATCGAACCCAGAGTCCAGG 59.095 55.000 0.0 0.0 0.0 4.45 R
3691 3889 0.033504 GTGCAGTTGAGGGAACGAGA 59.966 55.000 0.0 0.0 39.8 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.910351 AACTCAGAAGTTTTTATTACTCTGCT 57.090 30.769 0.00 0.00 43.28 4.24
37 38 8.910351 ACTCAGAAGTTTTTATTACTCTGCTT 57.090 30.769 0.00 0.00 28.74 3.91
38 39 8.778358 ACTCAGAAGTTTTTATTACTCTGCTTG 58.222 33.333 0.00 0.00 28.74 4.01
39 40 7.584987 TCAGAAGTTTTTATTACTCTGCTTGC 58.415 34.615 0.00 0.00 0.00 4.01
40 41 7.445402 TCAGAAGTTTTTATTACTCTGCTTGCT 59.555 33.333 0.00 0.00 0.00 3.91
41 42 8.721478 CAGAAGTTTTTATTACTCTGCTTGCTA 58.279 33.333 0.00 0.00 0.00 3.49
42 43 8.722394 AGAAGTTTTTATTACTCTGCTTGCTAC 58.278 33.333 0.00 0.00 0.00 3.58
43 44 7.979444 AGTTTTTATTACTCTGCTTGCTACA 57.021 32.000 0.00 0.00 0.00 2.74
44 45 8.391075 AGTTTTTATTACTCTGCTTGCTACAA 57.609 30.769 0.00 0.00 0.00 2.41
45 46 9.014297 AGTTTTTATTACTCTGCTTGCTACAAT 57.986 29.630 0.00 0.00 0.00 2.71
46 47 9.626045 GTTTTTATTACTCTGCTTGCTACAATT 57.374 29.630 0.00 0.00 0.00 2.32
50 51 9.624697 TTATTACTCTGCTTGCTACAATTTTTG 57.375 29.630 0.00 0.00 0.00 2.44
51 52 4.874970 ACTCTGCTTGCTACAATTTTTGG 58.125 39.130 0.00 0.00 34.12 3.28
52 53 4.584325 ACTCTGCTTGCTACAATTTTTGGA 59.416 37.500 0.00 0.00 34.12 3.53
53 54 5.068987 ACTCTGCTTGCTACAATTTTTGGAA 59.931 36.000 0.00 0.00 34.12 3.53
54 55 6.100404 TCTGCTTGCTACAATTTTTGGAAT 57.900 33.333 0.00 0.00 34.12 3.01
55 56 6.523840 TCTGCTTGCTACAATTTTTGGAATT 58.476 32.000 0.00 0.00 34.12 2.17
56 57 6.991531 TCTGCTTGCTACAATTTTTGGAATTT 59.008 30.769 0.00 0.00 34.12 1.82
57 58 8.147058 TCTGCTTGCTACAATTTTTGGAATTTA 58.853 29.630 0.00 0.00 34.12 1.40
58 59 8.082334 TGCTTGCTACAATTTTTGGAATTTAC 57.918 30.769 0.00 0.00 34.12 2.01
59 60 7.172361 TGCTTGCTACAATTTTTGGAATTTACC 59.828 33.333 0.00 0.00 34.12 2.85
60 61 7.621219 GCTTGCTACAATTTTTGGAATTTACCG 60.621 37.037 0.00 0.00 34.12 4.02
61 62 6.750148 TGCTACAATTTTTGGAATTTACCGT 58.250 32.000 0.00 0.00 34.12 4.83
62 63 7.883217 TGCTACAATTTTTGGAATTTACCGTA 58.117 30.769 0.00 0.00 34.12 4.02
63 64 7.808856 TGCTACAATTTTTGGAATTTACCGTAC 59.191 33.333 0.00 0.00 34.12 3.67
64 65 7.808856 GCTACAATTTTTGGAATTTACCGTACA 59.191 33.333 0.00 0.00 34.12 2.90
65 66 9.849166 CTACAATTTTTGGAATTTACCGTACAT 57.151 29.630 0.00 0.00 34.12 2.29
66 67 8.751302 ACAATTTTTGGAATTTACCGTACATC 57.249 30.769 0.00 0.00 34.12 3.06
67 68 8.361139 ACAATTTTTGGAATTTACCGTACATCA 58.639 29.630 0.00 0.00 34.12 3.07
68 69 8.643752 CAATTTTTGGAATTTACCGTACATCAC 58.356 33.333 0.00 0.00 0.00 3.06
69 70 5.883503 TTTGGAATTTACCGTACATCACC 57.116 39.130 0.00 0.00 0.00 4.02
70 71 3.523547 TGGAATTTACCGTACATCACCG 58.476 45.455 0.00 0.00 0.00 4.94
71 72 2.286025 GGAATTTACCGTACATCACCGC 59.714 50.000 0.00 0.00 0.00 5.68
72 73 2.973694 ATTTACCGTACATCACCGCT 57.026 45.000 0.00 0.00 0.00 5.52
73 74 2.282701 TTTACCGTACATCACCGCTC 57.717 50.000 0.00 0.00 0.00 5.03
74 75 1.466856 TTACCGTACATCACCGCTCT 58.533 50.000 0.00 0.00 0.00 4.09
75 76 1.019673 TACCGTACATCACCGCTCTC 58.980 55.000 0.00 0.00 0.00 3.20
76 77 0.963856 ACCGTACATCACCGCTCTCA 60.964 55.000 0.00 0.00 0.00 3.27
77 78 0.248661 CCGTACATCACCGCTCTCAG 60.249 60.000 0.00 0.00 0.00 3.35
78 79 0.867753 CGTACATCACCGCTCTCAGC 60.868 60.000 0.00 0.00 38.02 4.26
79 80 0.457851 GTACATCACCGCTCTCAGCT 59.542 55.000 0.00 0.00 39.60 4.24
80 81 1.134965 GTACATCACCGCTCTCAGCTT 60.135 52.381 0.00 0.00 39.60 3.74
81 82 0.108424 ACATCACCGCTCTCAGCTTC 60.108 55.000 0.00 0.00 39.60 3.86
82 83 1.140589 ATCACCGCTCTCAGCTTCG 59.859 57.895 0.00 0.00 39.60 3.79
83 84 2.897641 ATCACCGCTCTCAGCTTCGC 62.898 60.000 0.00 0.00 39.60 4.70
84 85 3.377759 ACCGCTCTCAGCTTCGCT 61.378 61.111 0.00 0.00 39.60 4.93
85 86 2.125753 CCGCTCTCAGCTTCGCTT 60.126 61.111 0.00 0.00 39.60 4.68
86 87 1.739562 CCGCTCTCAGCTTCGCTTT 60.740 57.895 0.00 0.00 39.60 3.51
87 88 1.691215 CCGCTCTCAGCTTCGCTTTC 61.691 60.000 0.00 0.00 39.60 2.62
88 89 0.735632 CGCTCTCAGCTTCGCTTTCT 60.736 55.000 0.00 0.00 39.60 2.52
89 90 0.998669 GCTCTCAGCTTCGCTTTCTC 59.001 55.000 0.00 0.00 36.40 2.87
90 91 1.404047 GCTCTCAGCTTCGCTTTCTCT 60.404 52.381 0.00 0.00 36.40 3.10
91 92 2.529151 CTCTCAGCTTCGCTTTCTCTC 58.471 52.381 0.00 0.00 36.40 3.20
92 93 1.889170 TCTCAGCTTCGCTTTCTCTCA 59.111 47.619 0.00 0.00 36.40 3.27
93 94 1.991965 CTCAGCTTCGCTTTCTCTCAC 59.008 52.381 0.00 0.00 36.40 3.51
94 95 1.074752 CAGCTTCGCTTTCTCTCACC 58.925 55.000 0.00 0.00 36.40 4.02
95 96 0.972883 AGCTTCGCTTTCTCTCACCT 59.027 50.000 0.00 0.00 33.89 4.00
96 97 1.346068 AGCTTCGCTTTCTCTCACCTT 59.654 47.619 0.00 0.00 33.89 3.50
97 98 1.729517 GCTTCGCTTTCTCTCACCTTC 59.270 52.381 0.00 0.00 0.00 3.46
98 99 2.611722 GCTTCGCTTTCTCTCACCTTCT 60.612 50.000 0.00 0.00 0.00 2.85
99 100 3.249917 CTTCGCTTTCTCTCACCTTCTC 58.750 50.000 0.00 0.00 0.00 2.87
100 101 1.546476 TCGCTTTCTCTCACCTTCTCC 59.454 52.381 0.00 0.00 0.00 3.71
101 102 1.548269 CGCTTTCTCTCACCTTCTCCT 59.452 52.381 0.00 0.00 0.00 3.69
102 103 2.673610 CGCTTTCTCTCACCTTCTCCTG 60.674 54.545 0.00 0.00 0.00 3.86
103 104 2.934801 GCTTTCTCTCACCTTCTCCTGC 60.935 54.545 0.00 0.00 0.00 4.85
104 105 2.317371 TTCTCTCACCTTCTCCTGCT 57.683 50.000 0.00 0.00 0.00 4.24
105 106 2.317371 TCTCTCACCTTCTCCTGCTT 57.683 50.000 0.00 0.00 0.00 3.91
106 107 2.614259 TCTCTCACCTTCTCCTGCTTT 58.386 47.619 0.00 0.00 0.00 3.51
107 108 2.301296 TCTCTCACCTTCTCCTGCTTTG 59.699 50.000 0.00 0.00 0.00 2.77
108 109 1.349026 TCTCACCTTCTCCTGCTTTGG 59.651 52.381 0.00 0.00 0.00 3.28
109 110 1.072965 CTCACCTTCTCCTGCTTTGGT 59.927 52.381 0.00 0.00 0.00 3.67
110 111 2.303022 CTCACCTTCTCCTGCTTTGGTA 59.697 50.000 0.00 0.00 0.00 3.25
111 112 2.912956 TCACCTTCTCCTGCTTTGGTAT 59.087 45.455 0.00 0.00 0.00 2.73
112 113 3.330701 TCACCTTCTCCTGCTTTGGTATT 59.669 43.478 0.00 0.00 0.00 1.89
113 114 4.082125 CACCTTCTCCTGCTTTGGTATTT 58.918 43.478 0.00 0.00 0.00 1.40
114 115 4.524328 CACCTTCTCCTGCTTTGGTATTTT 59.476 41.667 0.00 0.00 0.00 1.82
115 116 4.767409 ACCTTCTCCTGCTTTGGTATTTTC 59.233 41.667 0.00 0.00 0.00 2.29
116 117 5.012893 CCTTCTCCTGCTTTGGTATTTTCT 58.987 41.667 0.00 0.00 0.00 2.52
117 118 5.124617 CCTTCTCCTGCTTTGGTATTTTCTC 59.875 44.000 0.00 0.00 0.00 2.87
118 119 4.589908 TCTCCTGCTTTGGTATTTTCTCC 58.410 43.478 0.00 0.00 0.00 3.71
119 120 4.289672 TCTCCTGCTTTGGTATTTTCTCCT 59.710 41.667 0.00 0.00 0.00 3.69
120 121 4.998051 TCCTGCTTTGGTATTTTCTCCTT 58.002 39.130 0.00 0.00 0.00 3.36
121 122 5.010282 TCCTGCTTTGGTATTTTCTCCTTC 58.990 41.667 0.00 0.00 0.00 3.46
122 123 4.766891 CCTGCTTTGGTATTTTCTCCTTCA 59.233 41.667 0.00 0.00 0.00 3.02
123 124 5.105997 CCTGCTTTGGTATTTTCTCCTTCAG 60.106 44.000 0.00 0.00 0.00 3.02
124 125 5.630121 TGCTTTGGTATTTTCTCCTTCAGA 58.370 37.500 0.00 0.00 0.00 3.27
125 126 5.707298 TGCTTTGGTATTTTCTCCTTCAGAG 59.293 40.000 0.00 0.00 44.75 3.35
134 135 1.569708 CTCCTTCAGAGAATGCTCGC 58.430 55.000 0.00 0.00 46.50 5.03
666 667 2.807837 GCATGCAGAAATAAATGGCCCC 60.808 50.000 14.21 0.00 0.00 5.80
672 673 4.683129 GCAGAAATAAATGGCCCCGATTTT 60.683 41.667 0.00 0.00 0.00 1.82
704 705 3.137459 CGCTCCTCGCTCTGACCT 61.137 66.667 0.00 0.00 36.13 3.85
707 708 1.806568 CTCCTCGCTCTGACCTGAC 59.193 63.158 0.00 0.00 0.00 3.51
708 709 1.987704 CTCCTCGCTCTGACCTGACG 61.988 65.000 0.00 0.00 0.00 4.35
709 710 2.487428 CTCGCTCTGACCTGACGG 59.513 66.667 0.00 0.00 0.00 4.79
710 711 3.057547 CTCGCTCTGACCTGACGGG 62.058 68.421 0.00 0.00 41.89 5.28
711 712 4.135153 CGCTCTGACCTGACGGGG 62.135 72.222 5.03 0.00 40.03 5.73
712 713 2.680352 GCTCTGACCTGACGGGGA 60.680 66.667 5.03 0.00 40.03 4.81
713 714 3.007973 GCTCTGACCTGACGGGGAC 62.008 68.421 5.03 0.00 40.03 4.46
728 729 0.177373 GGGACGGGGTGAACTGTATC 59.823 60.000 0.00 0.00 0.00 2.24
733 734 1.751437 GGGGTGAACTGTATCCTTGC 58.249 55.000 0.00 0.00 0.00 4.01
740 741 0.461961 ACTGTATCCTTGCTCCTCGC 59.538 55.000 0.00 0.00 39.77 5.03
759 760 2.881528 GCCATTGCCCCTTGTTGCA 61.882 57.895 0.00 0.00 35.27 4.08
767 768 0.322008 CCCCTTGTTGCAGTCCTCTC 60.322 60.000 0.00 0.00 0.00 3.20
808 809 2.166254 CTCTCTGCTTGTCTCCTTCTCC 59.834 54.545 0.00 0.00 0.00 3.71
839 855 2.063378 CCTCCCACTCCTCTCTGCC 61.063 68.421 0.00 0.00 0.00 4.85
871 890 1.767088 ACCCCCGTCTATTTAAGCCTC 59.233 52.381 0.00 0.00 0.00 4.70
887 906 0.961753 CCTCCTGCCTTGGTTTGTTC 59.038 55.000 0.00 0.00 0.00 3.18
898 917 4.996758 CCTTGGTTTGTTCATTGGATTTCC 59.003 41.667 0.00 0.00 0.00 3.13
1044 1078 1.068954 GGAAAGGAAGCGACTTTGCTG 60.069 52.381 12.48 0.00 46.60 4.41
1155 1189 3.462678 GTCACCTCCTCCCCGCTC 61.463 72.222 0.00 0.00 0.00 5.03
1566 1630 4.637489 CAGGCGATCCTCGAGGCG 62.637 72.222 27.39 24.62 43.74 5.52
1587 1651 1.380524 TGGAGTCGGAGAAGATCGTC 58.619 55.000 0.00 0.00 39.69 4.20
1779 1843 2.613506 GCCGTTCCAGTTCAACCCG 61.614 63.158 0.00 0.00 0.00 5.28
1897 1967 3.667282 CCACCGACGACGACACCT 61.667 66.667 9.28 0.00 42.66 4.00
1900 1970 3.054503 CCGACGACGACACCTCCT 61.055 66.667 9.28 0.00 42.66 3.69
2031 2104 1.228862 GCCCAAGGTGATGGTGGTT 60.229 57.895 0.00 0.00 38.91 3.67
2032 2105 0.831711 GCCCAAGGTGATGGTGGTTT 60.832 55.000 0.00 0.00 38.91 3.27
2033 2106 0.968405 CCCAAGGTGATGGTGGTTTG 59.032 55.000 0.00 0.00 38.91 2.93
2034 2107 0.318120 CCAAGGTGATGGTGGTTTGC 59.682 55.000 0.00 0.00 35.65 3.68
2059 2132 4.988598 AGGCGAGCCACAACACGG 62.989 66.667 17.18 0.00 38.92 4.94
2485 2558 1.270414 ATGTCTGCCTGGACTCTGGG 61.270 60.000 0.00 0.00 37.16 4.45
2611 2699 6.587206 AGTACTCCTACTTTGTTGTAGACC 57.413 41.667 0.00 0.00 41.63 3.85
2697 2790 0.953727 CCATGGGTGTGTGTCTGTTG 59.046 55.000 2.85 0.00 0.00 3.33
2710 2820 6.263617 TGTGTGTCTGTTGATAGTACTGTGTA 59.736 38.462 5.39 0.00 0.00 2.90
2751 2867 5.680619 TCGGATTAGTGCATAGATTTTGGT 58.319 37.500 0.00 0.00 0.00 3.67
2811 2968 4.883585 TGGATTGGATCTTTGATCTTTCCG 59.116 41.667 7.38 0.00 0.00 4.30
2867 3026 1.691434 TGCATTTGGTGAAAAGGGGAC 59.309 47.619 0.00 0.00 30.15 4.46
2884 3043 0.652592 GACAAACCCAGATGCGATCG 59.347 55.000 11.69 11.69 0.00 3.69
2907 3066 5.581085 CGGTTCCTGATGAGTTAGGTAAAAG 59.419 44.000 0.00 0.00 35.54 2.27
2908 3067 5.880887 GGTTCCTGATGAGTTAGGTAAAAGG 59.119 44.000 0.00 0.00 35.54 3.11
2909 3068 5.099042 TCCTGATGAGTTAGGTAAAAGGC 57.901 43.478 0.00 0.00 35.54 4.35
2930 3106 2.093306 TGTGAGCCGAACGATTGAAT 57.907 45.000 0.00 0.00 0.00 2.57
2945 3121 5.032863 CGATTGAATGCTTTCTTGTCATCC 58.967 41.667 12.96 0.00 32.78 3.51
2963 3139 4.156556 TCATCCAAAGAAAGAAGGCGATTG 59.843 41.667 0.00 0.00 0.00 2.67
3058 3238 4.084287 GACGGGTTAAGGGGAGAAATTTT 58.916 43.478 0.00 0.00 0.00 1.82
3086 3271 3.863424 TGTCTGAACGACTGAACTTTCAC 59.137 43.478 0.00 0.00 43.25 3.18
3090 3279 1.849097 ACGACTGAACTTTCACGGTC 58.151 50.000 6.85 0.00 32.87 4.79
3123 3312 2.089854 AGCTTGCGCTATGTTTCGG 58.910 52.632 9.73 0.00 46.79 4.30
3132 3322 1.332028 GCTATGTTTCGGATTCACGCG 60.332 52.381 3.53 3.53 0.00 6.01
3151 3341 7.744059 TCACGCGTGATTTTTCATAGAAAATA 58.256 30.769 36.40 9.19 38.85 1.40
3152 3342 7.902917 TCACGCGTGATTTTTCATAGAAAATAG 59.097 33.333 36.40 5.22 38.85 1.73
3153 3343 6.687105 ACGCGTGATTTTTCATAGAAAATAGC 59.313 34.615 12.93 6.73 38.85 2.97
3154 3344 6.686679 CGCGTGATTTTTCATAGAAAATAGCA 59.313 34.615 0.00 4.29 38.85 3.49
3155 3345 7.376866 CGCGTGATTTTTCATAGAAAATAGCAT 59.623 33.333 0.00 0.00 38.85 3.79
3156 3346 8.474577 GCGTGATTTTTCATAGAAAATAGCATG 58.525 33.333 5.83 10.90 38.85 4.06
3157 3347 9.507280 CGTGATTTTTCATAGAAAATAGCATGT 57.493 29.630 5.83 0.00 38.85 3.21
3180 3371 8.560355 TGTACATATGTAAAACATGCTGAACT 57.440 30.769 17.07 0.00 39.53 3.01
3186 3377 4.515191 TGTAAAACATGCTGAACTGTCCTC 59.485 41.667 0.00 0.00 0.00 3.71
3203 3394 2.355126 CGTCGATGGCTCATCCGG 60.355 66.667 0.00 0.00 37.57 5.14
3218 3409 1.376424 CCGGAACTGATGCTGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
3220 3411 0.671472 CGGAACTGATGCTGCTGTGA 60.671 55.000 0.00 0.00 0.00 3.58
3221 3412 1.747709 GGAACTGATGCTGCTGTGAT 58.252 50.000 0.00 0.00 0.00 3.06
3228 3419 2.160205 GATGCTGCTGTGATGGCATAT 58.840 47.619 0.00 0.00 44.06 1.78
3229 3420 2.934886 TGCTGCTGTGATGGCATATA 57.065 45.000 0.00 0.00 39.07 0.86
3230 3421 3.428413 TGCTGCTGTGATGGCATATAT 57.572 42.857 0.00 0.00 39.07 0.86
3231 3422 3.758425 TGCTGCTGTGATGGCATATATT 58.242 40.909 0.00 0.00 39.07 1.28
3232 3423 4.146564 TGCTGCTGTGATGGCATATATTT 58.853 39.130 0.00 0.00 39.07 1.40
3233 3424 4.585581 TGCTGCTGTGATGGCATATATTTT 59.414 37.500 0.00 0.00 39.07 1.82
3234 3425 4.921515 GCTGCTGTGATGGCATATATTTTG 59.078 41.667 0.00 0.00 39.07 2.44
3235 3426 5.456548 TGCTGTGATGGCATATATTTTGG 57.543 39.130 0.00 0.00 34.56 3.28
3236 3427 4.281435 TGCTGTGATGGCATATATTTTGGG 59.719 41.667 0.00 0.00 34.56 4.12
3237 3428 4.281688 GCTGTGATGGCATATATTTTGGGT 59.718 41.667 0.00 0.00 0.00 4.51
3238 3429 5.476599 GCTGTGATGGCATATATTTTGGGTA 59.523 40.000 0.00 0.00 0.00 3.69
3239 3430 6.153340 GCTGTGATGGCATATATTTTGGGTAT 59.847 38.462 0.00 0.00 0.00 2.73
3240 3431 7.465353 TGTGATGGCATATATTTTGGGTATG 57.535 36.000 0.00 0.00 0.00 2.39
3241 3432 7.009550 TGTGATGGCATATATTTTGGGTATGT 58.990 34.615 0.00 0.00 0.00 2.29
3242 3433 7.176515 TGTGATGGCATATATTTTGGGTATGTC 59.823 37.037 0.00 0.00 32.52 3.06
3243 3434 7.394359 GTGATGGCATATATTTTGGGTATGTCT 59.606 37.037 0.00 0.00 32.97 3.41
3244 3435 8.610369 TGATGGCATATATTTTGGGTATGTCTA 58.390 33.333 0.00 0.00 32.97 2.59
3245 3436 9.113838 GATGGCATATATTTTGGGTATGTCTAG 57.886 37.037 0.00 0.00 32.97 2.43
3246 3437 7.402054 TGGCATATATTTTGGGTATGTCTAGG 58.598 38.462 0.00 0.00 32.97 3.02
3247 3438 7.238723 TGGCATATATTTTGGGTATGTCTAGGA 59.761 37.037 0.00 0.00 32.97 2.94
3248 3439 7.553044 GGCATATATTTTGGGTATGTCTAGGAC 59.447 40.741 0.00 0.00 30.01 3.85
3249 3440 8.100791 GCATATATTTTGGGTATGTCTAGGACA 58.899 37.037 2.80 2.80 46.90 4.02
3250 3441 9.436957 CATATATTTTGGGTATGTCTAGGACAC 57.563 37.037 2.34 0.00 45.65 3.67
3251 3442 5.772393 ATTTTGGGTATGTCTAGGACACA 57.228 39.130 2.34 0.00 45.65 3.72
3252 3443 5.772393 TTTTGGGTATGTCTAGGACACAT 57.228 39.130 2.34 1.62 45.65 3.21
3253 3444 4.753516 TTGGGTATGTCTAGGACACATG 57.246 45.455 2.34 0.00 45.65 3.21
3254 3445 3.719871 TGGGTATGTCTAGGACACATGT 58.280 45.455 2.34 0.00 45.65 3.21
3255 3446 4.874199 TGGGTATGTCTAGGACACATGTA 58.126 43.478 0.00 0.00 45.65 2.29
3256 3447 4.893524 TGGGTATGTCTAGGACACATGTAG 59.106 45.833 0.00 0.00 45.65 2.74
3257 3448 5.138276 GGGTATGTCTAGGACACATGTAGA 58.862 45.833 0.00 0.00 45.65 2.59
3258 3449 5.775701 GGGTATGTCTAGGACACATGTAGAT 59.224 44.000 0.00 0.00 45.65 1.98
3259 3450 6.294787 GGGTATGTCTAGGACACATGTAGATG 60.295 46.154 0.00 0.00 45.65 2.90
3260 3451 6.265649 GGTATGTCTAGGACACATGTAGATGT 59.734 42.308 0.00 0.00 45.65 3.06
3261 3452 7.447545 GGTATGTCTAGGACACATGTAGATGTA 59.552 40.741 5.01 0.00 45.65 2.29
3262 3453 7.898014 ATGTCTAGGACACATGTAGATGTAA 57.102 36.000 5.01 0.00 45.65 2.41
3263 3454 7.096884 TGTCTAGGACACATGTAGATGTAAC 57.903 40.000 5.01 3.02 41.12 2.50
3264 3455 6.661805 TGTCTAGGACACATGTAGATGTAACA 59.338 38.462 5.01 0.00 41.12 2.41
3265 3456 7.342026 TGTCTAGGACACATGTAGATGTAACAT 59.658 37.037 5.01 3.53 41.12 2.71
3266 3457 8.198109 GTCTAGGACACATGTAGATGTAACATT 58.802 37.037 5.01 0.00 41.12 2.71
3267 3458 8.414003 TCTAGGACACATGTAGATGTAACATTC 58.586 37.037 5.01 0.00 41.12 2.67
3268 3459 7.187824 AGGACACATGTAGATGTAACATTCT 57.812 36.000 5.01 0.00 41.12 2.40
3269 3460 8.306313 AGGACACATGTAGATGTAACATTCTA 57.694 34.615 5.01 0.00 41.12 2.10
3270 3461 8.758829 AGGACACATGTAGATGTAACATTCTAA 58.241 33.333 5.01 0.00 41.12 2.10
3271 3462 8.818057 GGACACATGTAGATGTAACATTCTAAC 58.182 37.037 5.01 0.00 41.12 2.34
3272 3463 8.718102 ACACATGTAGATGTAACATTCTAACC 57.282 34.615 5.01 0.00 41.12 2.85
3273 3464 8.540388 ACACATGTAGATGTAACATTCTAACCT 58.460 33.333 5.01 0.00 41.12 3.50
3293 3484 9.950680 CTAACCTAATAAGCATTATGTTTGTGG 57.049 33.333 4.57 0.00 41.21 4.17
3294 3485 7.954666 ACCTAATAAGCATTATGTTTGTGGT 57.045 32.000 4.57 0.55 41.21 4.16
3295 3486 7.996385 ACCTAATAAGCATTATGTTTGTGGTC 58.004 34.615 4.57 0.00 41.21 4.02
3296 3487 7.834181 ACCTAATAAGCATTATGTTTGTGGTCT 59.166 33.333 4.57 0.00 41.21 3.85
3297 3488 9.337396 CCTAATAAGCATTATGTTTGTGGTCTA 57.663 33.333 4.57 0.00 41.21 2.59
3352 3543 7.527084 TTTTTGTTGCTGCGTAGTTATTTTT 57.473 28.000 1.53 0.00 0.00 1.94
3353 3544 6.503616 TTTGTTGCTGCGTAGTTATTTTTG 57.496 33.333 1.53 0.00 0.00 2.44
3354 3545 4.541779 TGTTGCTGCGTAGTTATTTTTGG 58.458 39.130 1.53 0.00 0.00 3.28
3355 3546 3.840890 TGCTGCGTAGTTATTTTTGGG 57.159 42.857 1.53 0.00 0.00 4.12
3356 3547 3.413327 TGCTGCGTAGTTATTTTTGGGA 58.587 40.909 1.53 0.00 0.00 4.37
3357 3548 3.438781 TGCTGCGTAGTTATTTTTGGGAG 59.561 43.478 1.53 0.00 0.00 4.30
3358 3549 3.181500 GCTGCGTAGTTATTTTTGGGAGG 60.181 47.826 1.53 0.00 0.00 4.30
3359 3550 4.007659 CTGCGTAGTTATTTTTGGGAGGT 58.992 43.478 0.00 0.00 0.00 3.85
3360 3551 4.400120 TGCGTAGTTATTTTTGGGAGGTT 58.600 39.130 0.00 0.00 0.00 3.50
3361 3552 5.558818 TGCGTAGTTATTTTTGGGAGGTTA 58.441 37.500 0.00 0.00 0.00 2.85
3362 3553 5.644636 TGCGTAGTTATTTTTGGGAGGTTAG 59.355 40.000 0.00 0.00 0.00 2.34
3363 3554 5.876460 GCGTAGTTATTTTTGGGAGGTTAGA 59.124 40.000 0.00 0.00 0.00 2.10
3364 3555 6.541278 GCGTAGTTATTTTTGGGAGGTTAGAT 59.459 38.462 0.00 0.00 0.00 1.98
3365 3556 7.466860 GCGTAGTTATTTTTGGGAGGTTAGATG 60.467 40.741 0.00 0.00 0.00 2.90
3366 3557 7.551617 CGTAGTTATTTTTGGGAGGTTAGATGT 59.448 37.037 0.00 0.00 0.00 3.06
3367 3558 7.703058 AGTTATTTTTGGGAGGTTAGATGTG 57.297 36.000 0.00 0.00 0.00 3.21
3368 3559 7.466804 AGTTATTTTTGGGAGGTTAGATGTGA 58.533 34.615 0.00 0.00 0.00 3.58
3369 3560 7.393515 AGTTATTTTTGGGAGGTTAGATGTGAC 59.606 37.037 0.00 0.00 0.00 3.67
3370 3561 4.715534 TTTTGGGAGGTTAGATGTGACA 57.284 40.909 0.00 0.00 0.00 3.58
3371 3562 4.927267 TTTGGGAGGTTAGATGTGACAT 57.073 40.909 0.00 0.00 0.00 3.06
3372 3563 4.487714 TTGGGAGGTTAGATGTGACATC 57.512 45.455 17.46 17.46 0.00 3.06
3373 3564 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
3374 3565 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
3375 3566 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
3376 3567 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
3377 3568 5.130477 GGGAGGTTAGATGTGACATCCTTAA 59.870 44.000 21.05 11.73 44.05 1.85
3378 3569 6.352737 GGGAGGTTAGATGTGACATCCTTAAA 60.353 42.308 21.05 8.69 44.05 1.52
3379 3570 7.110155 GGAGGTTAGATGTGACATCCTTAAAA 58.890 38.462 21.05 6.42 42.00 1.52
3380 3571 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
3414 3605 9.722056 GATGTGACAAACTGATATATTTTGACC 57.278 33.333 13.01 6.84 34.21 4.02
3415 3606 7.747888 TGTGACAAACTGATATATTTTGACCG 58.252 34.615 13.01 0.00 34.21 4.79
3426 3617 1.511318 TTTTGACCGGTGTGCGATGG 61.511 55.000 14.63 0.00 0.00 3.51
3506 3704 2.140792 ACCGCACAGTGGAGGAGTT 61.141 57.895 1.84 0.00 36.58 3.01
3509 3707 1.227943 GCACAGTGGAGGAGTTGCA 60.228 57.895 1.84 0.00 0.00 4.08
3530 3728 4.687219 GCACCTATCTATGCTTTGGTTCCT 60.687 45.833 0.00 0.00 38.84 3.36
3533 3731 2.024176 TCTATGCTTTGGTTCCTCGC 57.976 50.000 0.00 0.00 0.00 5.03
3540 3738 0.181587 TTTGGTTCCTCGCCTTGTCA 59.818 50.000 0.00 0.00 0.00 3.58
3541 3739 0.400213 TTGGTTCCTCGCCTTGTCAT 59.600 50.000 0.00 0.00 0.00 3.06
3571 3769 2.359850 AACACGTGGCGATGGCAT 60.360 55.556 21.57 0.00 40.92 4.40
3586 3784 2.505982 CATCGGCCGTTGGATCCT 59.494 61.111 27.15 0.00 0.00 3.24
3588 3786 0.319900 CATCGGCCGTTGGATCCTAG 60.320 60.000 27.15 4.03 0.00 3.02
3664 3862 1.690633 GGGATCCTCCTCTGCACCA 60.691 63.158 12.58 0.00 36.57 4.17
3665 3863 1.524482 GGATCCTCCTCTGCACCAC 59.476 63.158 3.84 0.00 32.53 4.16
3666 3864 1.524482 GATCCTCCTCTGCACCACC 59.476 63.158 0.00 0.00 0.00 4.61
3667 3865 2.303549 GATCCTCCTCTGCACCACCG 62.304 65.000 0.00 0.00 0.00 4.94
3668 3866 3.314331 CCTCCTCTGCACCACCGT 61.314 66.667 0.00 0.00 0.00 4.83
3670 3868 1.374758 CTCCTCTGCACCACCGTTC 60.375 63.158 0.00 0.00 0.00 3.95
3671 3869 1.821061 CTCCTCTGCACCACCGTTCT 61.821 60.000 0.00 0.00 0.00 3.01
3672 3870 1.071471 CCTCTGCACCACCGTTCTT 59.929 57.895 0.00 0.00 0.00 2.52
3673 3871 0.535102 CCTCTGCACCACCGTTCTTT 60.535 55.000 0.00 0.00 0.00 2.52
3674 3872 1.308998 CTCTGCACCACCGTTCTTTT 58.691 50.000 0.00 0.00 0.00 2.27
3675 3873 1.002468 CTCTGCACCACCGTTCTTTTG 60.002 52.381 0.00 0.00 0.00 2.44
3676 3874 0.594796 CTGCACCACCGTTCTTTTGC 60.595 55.000 0.00 0.00 0.00 3.68
3680 3878 0.744281 ACCACCGTTCTTTTGCTTGG 59.256 50.000 0.00 0.00 0.00 3.61
3683 3881 2.607771 CCACCGTTCTTTTGCTTGGATG 60.608 50.000 0.00 0.00 0.00 3.51
3687 3885 2.554032 CGTTCTTTTGCTTGGATGGAGT 59.446 45.455 0.00 0.00 0.00 3.85
3691 3889 4.473444 TCTTTTGCTTGGATGGAGTTCTT 58.527 39.130 0.00 0.00 0.00 2.52
3699 3897 2.233922 TGGATGGAGTTCTTCTCGTTCC 59.766 50.000 0.00 0.00 43.60 3.62
3706 3904 2.966516 AGTTCTTCTCGTTCCCTCAACT 59.033 45.455 0.00 0.00 32.09 3.16
3715 3913 0.690762 TTCCCTCAACTGCACTACCC 59.309 55.000 0.00 0.00 0.00 3.69
3716 3914 0.472925 TCCCTCAACTGCACTACCCA 60.473 55.000 0.00 0.00 0.00 4.51
3722 3920 2.036733 TCAACTGCACTACCCACTGTAC 59.963 50.000 0.00 0.00 0.00 2.90
3724 3922 2.257207 ACTGCACTACCCACTGTACAT 58.743 47.619 0.00 0.00 0.00 2.29
3726 3924 3.262420 CTGCACTACCCACTGTACATTC 58.738 50.000 0.00 0.00 0.00 2.67
3727 3925 2.635427 TGCACTACCCACTGTACATTCA 59.365 45.455 0.00 0.00 0.00 2.57
3728 3926 3.263170 TGCACTACCCACTGTACATTCAT 59.737 43.478 0.00 0.00 0.00 2.57
3729 3927 3.623060 GCACTACCCACTGTACATTCATG 59.377 47.826 0.00 0.00 0.00 3.07
3730 3928 4.191544 CACTACCCACTGTACATTCATGG 58.808 47.826 0.00 2.38 0.00 3.66
3731 3929 2.128771 ACCCACTGTACATTCATGGC 57.871 50.000 0.00 0.00 0.00 4.40
3732 3930 1.340991 ACCCACTGTACATTCATGGCC 60.341 52.381 0.00 0.00 0.00 5.36
3733 3931 1.340893 CCCACTGTACATTCATGGCCA 60.341 52.381 8.56 8.56 0.00 5.36
3734 3932 1.745087 CCACTGTACATTCATGGCCAC 59.255 52.381 8.16 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.778358 CAAGCAGAGTAATAAAAACTTCTGAGT 58.222 33.333 3.68 0.00 37.87 3.41
13 14 7.748241 GCAAGCAGAGTAATAAAAACTTCTGAG 59.252 37.037 3.68 0.00 30.35 3.35
14 15 7.445402 AGCAAGCAGAGTAATAAAAACTTCTGA 59.555 33.333 3.68 0.00 30.35 3.27
15 16 7.588512 AGCAAGCAGAGTAATAAAAACTTCTG 58.411 34.615 0.00 0.00 0.00 3.02
16 17 7.751768 AGCAAGCAGAGTAATAAAAACTTCT 57.248 32.000 0.00 0.00 0.00 2.85
17 18 8.504005 TGTAGCAAGCAGAGTAATAAAAACTTC 58.496 33.333 0.00 0.00 0.00 3.01
18 19 8.391075 TGTAGCAAGCAGAGTAATAAAAACTT 57.609 30.769 0.00 0.00 0.00 2.66
19 20 7.979444 TGTAGCAAGCAGAGTAATAAAAACT 57.021 32.000 0.00 0.00 0.00 2.66
20 21 9.626045 AATTGTAGCAAGCAGAGTAATAAAAAC 57.374 29.630 0.00 0.00 0.00 2.43
24 25 9.624697 CAAAAATTGTAGCAAGCAGAGTAATAA 57.375 29.630 0.00 0.00 0.00 1.40
25 26 8.243426 CCAAAAATTGTAGCAAGCAGAGTAATA 58.757 33.333 0.00 0.00 0.00 0.98
26 27 7.039784 TCCAAAAATTGTAGCAAGCAGAGTAAT 60.040 33.333 0.00 0.00 0.00 1.89
27 28 6.264292 TCCAAAAATTGTAGCAAGCAGAGTAA 59.736 34.615 0.00 0.00 0.00 2.24
28 29 5.767665 TCCAAAAATTGTAGCAAGCAGAGTA 59.232 36.000 0.00 0.00 0.00 2.59
29 30 4.584325 TCCAAAAATTGTAGCAAGCAGAGT 59.416 37.500 0.00 0.00 0.00 3.24
30 31 5.125100 TCCAAAAATTGTAGCAAGCAGAG 57.875 39.130 0.00 0.00 0.00 3.35
31 32 5.528043 TTCCAAAAATTGTAGCAAGCAGA 57.472 34.783 0.00 0.00 0.00 4.26
32 33 6.790285 AATTCCAAAAATTGTAGCAAGCAG 57.210 33.333 0.00 0.00 0.00 4.24
33 34 7.172361 GGTAAATTCCAAAAATTGTAGCAAGCA 59.828 33.333 0.00 0.00 0.00 3.91
34 35 7.518161 GGTAAATTCCAAAAATTGTAGCAAGC 58.482 34.615 0.00 0.00 0.00 4.01
35 36 7.383843 ACGGTAAATTCCAAAAATTGTAGCAAG 59.616 33.333 0.00 0.00 0.00 4.01
36 37 7.210873 ACGGTAAATTCCAAAAATTGTAGCAA 58.789 30.769 0.00 0.00 0.00 3.91
37 38 6.750148 ACGGTAAATTCCAAAAATTGTAGCA 58.250 32.000 0.00 0.00 0.00 3.49
38 39 7.808856 TGTACGGTAAATTCCAAAAATTGTAGC 59.191 33.333 0.00 0.00 0.00 3.58
39 40 9.849166 ATGTACGGTAAATTCCAAAAATTGTAG 57.151 29.630 0.00 0.00 0.00 2.74
40 41 9.843334 GATGTACGGTAAATTCCAAAAATTGTA 57.157 29.630 0.00 0.00 0.00 2.41
41 42 8.361139 TGATGTACGGTAAATTCCAAAAATTGT 58.639 29.630 0.00 0.00 0.00 2.71
42 43 8.643752 GTGATGTACGGTAAATTCCAAAAATTG 58.356 33.333 0.00 0.00 0.00 2.32
43 44 7.815549 GGTGATGTACGGTAAATTCCAAAAATT 59.184 33.333 0.00 0.00 0.00 1.82
44 45 7.317390 GGTGATGTACGGTAAATTCCAAAAAT 58.683 34.615 0.00 0.00 0.00 1.82
45 46 6.568081 CGGTGATGTACGGTAAATTCCAAAAA 60.568 38.462 11.38 0.00 0.00 1.94
46 47 5.106634 CGGTGATGTACGGTAAATTCCAAAA 60.107 40.000 11.38 0.00 0.00 2.44
47 48 4.392445 CGGTGATGTACGGTAAATTCCAAA 59.608 41.667 11.38 0.00 0.00 3.28
48 49 3.933955 CGGTGATGTACGGTAAATTCCAA 59.066 43.478 11.38 0.00 0.00 3.53
49 50 3.523547 CGGTGATGTACGGTAAATTCCA 58.476 45.455 11.38 0.00 0.00 3.53
50 51 2.286025 GCGGTGATGTACGGTAAATTCC 59.714 50.000 0.00 0.00 32.62 3.01
51 52 3.192466 AGCGGTGATGTACGGTAAATTC 58.808 45.455 0.00 0.00 39.22 2.17
52 53 3.118884 AGAGCGGTGATGTACGGTAAATT 60.119 43.478 0.00 0.00 41.25 1.82
53 54 2.429610 AGAGCGGTGATGTACGGTAAAT 59.570 45.455 0.00 0.00 41.25 1.40
54 55 1.820519 AGAGCGGTGATGTACGGTAAA 59.179 47.619 0.00 0.00 41.25 2.01
55 56 1.402968 GAGAGCGGTGATGTACGGTAA 59.597 52.381 0.00 0.00 41.25 2.85
56 57 1.019673 GAGAGCGGTGATGTACGGTA 58.980 55.000 0.00 0.00 41.25 4.02
57 58 0.963856 TGAGAGCGGTGATGTACGGT 60.964 55.000 0.00 0.00 44.11 4.83
58 59 0.248661 CTGAGAGCGGTGATGTACGG 60.249 60.000 0.00 0.00 0.00 4.02
59 60 0.867753 GCTGAGAGCGGTGATGTACG 60.868 60.000 0.00 0.00 0.00 3.67
60 61 2.964911 GCTGAGAGCGGTGATGTAC 58.035 57.895 0.00 0.00 0.00 2.90
78 79 3.249917 GAGAAGGTGAGAGAAAGCGAAG 58.750 50.000 0.00 0.00 0.00 3.79
79 80 2.028930 GGAGAAGGTGAGAGAAAGCGAA 60.029 50.000 0.00 0.00 0.00 4.70
80 81 1.546476 GGAGAAGGTGAGAGAAAGCGA 59.454 52.381 0.00 0.00 0.00 4.93
81 82 1.548269 AGGAGAAGGTGAGAGAAAGCG 59.452 52.381 0.00 0.00 0.00 4.68
82 83 2.934801 GCAGGAGAAGGTGAGAGAAAGC 60.935 54.545 0.00 0.00 0.00 3.51
83 84 2.566724 AGCAGGAGAAGGTGAGAGAAAG 59.433 50.000 0.00 0.00 0.00 2.62
84 85 2.614259 AGCAGGAGAAGGTGAGAGAAA 58.386 47.619 0.00 0.00 0.00 2.52
85 86 2.317371 AGCAGGAGAAGGTGAGAGAA 57.683 50.000 0.00 0.00 0.00 2.87
86 87 2.301296 CAAAGCAGGAGAAGGTGAGAGA 59.699 50.000 0.00 0.00 0.00 3.10
87 88 2.614987 CCAAAGCAGGAGAAGGTGAGAG 60.615 54.545 0.00 0.00 0.00 3.20
88 89 1.349026 CCAAAGCAGGAGAAGGTGAGA 59.651 52.381 0.00 0.00 0.00 3.27
89 90 1.072965 ACCAAAGCAGGAGAAGGTGAG 59.927 52.381 0.00 0.00 0.00 3.51
90 91 1.140312 ACCAAAGCAGGAGAAGGTGA 58.860 50.000 0.00 0.00 0.00 4.02
91 92 2.859165 TACCAAAGCAGGAGAAGGTG 57.141 50.000 0.00 0.00 0.00 4.00
92 93 4.388577 AAATACCAAAGCAGGAGAAGGT 57.611 40.909 0.00 0.00 0.00 3.50
93 94 5.012893 AGAAAATACCAAAGCAGGAGAAGG 58.987 41.667 0.00 0.00 0.00 3.46
94 95 5.124617 GGAGAAAATACCAAAGCAGGAGAAG 59.875 44.000 0.00 0.00 0.00 2.85
95 96 5.010282 GGAGAAAATACCAAAGCAGGAGAA 58.990 41.667 0.00 0.00 0.00 2.87
96 97 4.289672 AGGAGAAAATACCAAAGCAGGAGA 59.710 41.667 0.00 0.00 0.00 3.71
97 98 4.593956 AGGAGAAAATACCAAAGCAGGAG 58.406 43.478 0.00 0.00 0.00 3.69
98 99 4.657814 AGGAGAAAATACCAAAGCAGGA 57.342 40.909 0.00 0.00 0.00 3.86
99 100 4.766891 TGAAGGAGAAAATACCAAAGCAGG 59.233 41.667 0.00 0.00 0.00 4.85
100 101 5.707298 TCTGAAGGAGAAAATACCAAAGCAG 59.293 40.000 0.00 0.00 0.00 4.24
101 102 5.630121 TCTGAAGGAGAAAATACCAAAGCA 58.370 37.500 0.00 0.00 0.00 3.91
102 103 5.940470 TCTCTGAAGGAGAAAATACCAAAGC 59.060 40.000 0.00 0.00 46.85 3.51
115 116 1.569708 GCGAGCATTCTCTGAAGGAG 58.430 55.000 0.00 0.00 43.12 3.69
116 117 3.748863 GCGAGCATTCTCTGAAGGA 57.251 52.632 0.00 0.00 37.19 3.36
591 592 6.925718 TGCATCAGTATTCAGTATTCAGTAGC 59.074 38.462 0.00 0.00 0.00 3.58
592 593 8.923683 CATGCATCAGTATTCAGTATTCAGTAG 58.076 37.037 0.00 0.00 0.00 2.57
593 594 7.386025 GCATGCATCAGTATTCAGTATTCAGTA 59.614 37.037 14.21 0.00 0.00 2.74
594 595 6.204301 GCATGCATCAGTATTCAGTATTCAGT 59.796 38.462 14.21 0.00 0.00 3.41
595 596 6.600350 GCATGCATCAGTATTCAGTATTCAG 58.400 40.000 14.21 0.00 0.00 3.02
596 597 5.178067 CGCATGCATCAGTATTCAGTATTCA 59.822 40.000 19.57 0.00 0.00 2.57
597 598 5.178252 ACGCATGCATCAGTATTCAGTATTC 59.822 40.000 19.57 0.00 0.00 1.75
598 599 5.049886 CACGCATGCATCAGTATTCAGTATT 60.050 40.000 19.57 0.00 0.00 1.89
599 600 4.450080 CACGCATGCATCAGTATTCAGTAT 59.550 41.667 19.57 0.00 0.00 2.12
600 601 3.803778 CACGCATGCATCAGTATTCAGTA 59.196 43.478 19.57 0.00 0.00 2.74
601 602 2.610833 CACGCATGCATCAGTATTCAGT 59.389 45.455 19.57 0.00 0.00 3.41
602 603 3.249013 CACGCATGCATCAGTATTCAG 57.751 47.619 19.57 0.00 0.00 3.02
666 667 1.130561 GAGCGGACAAAGGGAAAATCG 59.869 52.381 0.00 0.00 0.00 3.34
704 705 4.938074 TTCACCCCGTCCCCGTCA 62.938 66.667 0.00 0.00 0.00 4.35
707 708 4.388499 CAGTTCACCCCGTCCCCG 62.388 72.222 0.00 0.00 0.00 5.73
708 709 1.269703 ATACAGTTCACCCCGTCCCC 61.270 60.000 0.00 0.00 0.00 4.81
709 710 0.177373 GATACAGTTCACCCCGTCCC 59.823 60.000 0.00 0.00 0.00 4.46
710 711 0.177373 GGATACAGTTCACCCCGTCC 59.823 60.000 0.00 0.00 0.00 4.79
711 712 1.192428 AGGATACAGTTCACCCCGTC 58.808 55.000 0.00 0.00 41.41 4.79
712 713 1.278127 CAAGGATACAGTTCACCCCGT 59.722 52.381 0.00 0.00 41.41 5.28
713 714 2.012051 GCAAGGATACAGTTCACCCCG 61.012 57.143 0.00 0.00 41.41 5.73
714 715 1.282157 AGCAAGGATACAGTTCACCCC 59.718 52.381 0.00 0.00 41.41 4.95
715 716 2.633488 GAGCAAGGATACAGTTCACCC 58.367 52.381 0.00 0.00 41.41 4.61
716 717 2.237392 AGGAGCAAGGATACAGTTCACC 59.763 50.000 0.00 0.00 41.41 4.02
740 741 2.262292 CAACAAGGGGCAATGGCG 59.738 61.111 0.00 0.00 42.47 5.69
767 768 0.955919 GAACAAAGGGCAGAGGTCCG 60.956 60.000 0.00 0.00 46.12 4.79
808 809 3.775654 GGAGGACACGGCAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
853 872 2.047830 AGGAGGCTTAAATAGACGGGG 58.952 52.381 0.00 0.00 36.79 5.73
871 890 2.548493 CCAATGAACAAACCAAGGCAGG 60.548 50.000 0.00 0.00 0.00 4.85
887 906 2.568509 ACTGCAAAGGGGAAATCCAATG 59.431 45.455 1.22 0.00 37.91 2.82
932 951 3.049674 TTTTGGCTCGCTGCGGAG 61.050 61.111 23.03 17.88 44.05 4.63
1009 1043 6.636562 TTCCTTTCCGTGTCTATCTATCTC 57.363 41.667 0.00 0.00 0.00 2.75
1155 1189 1.815003 GGCATGTTGGAGAAGTTCTGG 59.185 52.381 10.90 0.00 0.00 3.86
1494 1558 2.282958 AGGTCGAGGAAGTGGCGA 60.283 61.111 0.00 0.00 0.00 5.54
1497 1561 1.216710 GCAGAGGTCGAGGAAGTGG 59.783 63.158 0.00 0.00 0.00 4.00
1504 1568 2.726351 GGAAGGGGCAGAGGTCGAG 61.726 68.421 0.00 0.00 0.00 4.04
1566 1630 1.950909 ACGATCTTCTCCGACTCCATC 59.049 52.381 0.00 0.00 0.00 3.51
1587 1651 2.102357 CCGAGGTCGATGACGTGG 59.898 66.667 0.00 0.00 43.02 4.94
2031 2104 4.441695 CTCGCCTCCTGCTCGCAA 62.442 66.667 0.00 0.00 38.05 4.85
2466 2539 1.270414 CCCAGAGTCCAGGCAGACAT 61.270 60.000 9.90 0.00 39.34 3.06
2471 2544 2.583441 CGAACCCAGAGTCCAGGCA 61.583 63.158 0.00 0.00 0.00 4.75
2472 2545 1.617947 ATCGAACCCAGAGTCCAGGC 61.618 60.000 0.00 0.00 0.00 4.85
2473 2546 0.905357 AATCGAACCCAGAGTCCAGG 59.095 55.000 0.00 0.00 0.00 4.45
2485 2558 6.850555 ACTACTAGTAGTGGTGAAATCGAAC 58.149 40.000 30.33 0.00 44.11 3.95
2592 2678 4.778534 TCGGTCTACAACAAAGTAGGAG 57.221 45.455 0.00 0.00 41.39 3.69
2594 2680 4.879598 AGTTCGGTCTACAACAAAGTAGG 58.120 43.478 0.00 0.00 41.39 3.18
2611 2699 1.001048 CATATGCATGCCCCAAGTTCG 60.001 52.381 16.68 0.00 0.00 3.95
2697 2790 4.558898 CGGGAAGGCATACACAGTACTATC 60.559 50.000 0.00 0.00 0.00 2.08
2710 2820 0.966179 GAACCAAAACGGGAAGGCAT 59.034 50.000 0.00 0.00 40.22 4.40
2751 2867 4.502087 CGGCAGATCACTTCATCATTCCTA 60.502 45.833 0.00 0.00 0.00 2.94
2846 3003 1.969923 TCCCCTTTTCACCAAATGCAG 59.030 47.619 0.00 0.00 0.00 4.41
2867 3026 0.744414 ACCGATCGCATCTGGGTTTG 60.744 55.000 10.32 0.00 0.00 2.93
2884 3043 5.880887 CCTTTTACCTAACTCATCAGGAACC 59.119 44.000 0.00 0.00 35.76 3.62
2909 3068 1.428448 TCAATCGTTCGGCTCACAAG 58.572 50.000 0.00 0.00 0.00 3.16
2922 3082 5.032863 GGATGACAAGAAAGCATTCAATCG 58.967 41.667 4.27 0.00 38.06 3.34
2930 3106 5.593909 TCTTTCTTTGGATGACAAGAAAGCA 59.406 36.000 21.65 12.51 43.90 3.91
2945 3121 2.245096 CGCAATCGCCTTCTTTCTTTG 58.755 47.619 0.00 0.00 33.11 2.77
3037 3217 3.820195 AAATTTCTCCCCTTAACCCGT 57.180 42.857 0.00 0.00 0.00 5.28
3110 3299 1.332028 CGTGAATCCGAAACATAGCGC 60.332 52.381 0.00 0.00 0.00 5.92
3123 3312 5.795766 TCTATGAAAAATCACGCGTGAATC 58.204 37.500 41.74 32.78 43.58 2.52
3153 3343 9.225201 GTTCAGCATGTTTTACATATGTACATG 57.775 33.333 29.64 29.64 41.71 3.21
3154 3344 9.177608 AGTTCAGCATGTTTTACATATGTACAT 57.822 29.630 15.20 14.72 36.53 2.29
3155 3345 8.450180 CAGTTCAGCATGTTTTACATATGTACA 58.550 33.333 15.20 13.09 36.53 2.90
3156 3346 8.450964 ACAGTTCAGCATGTTTTACATATGTAC 58.549 33.333 15.20 7.63 36.53 2.90
3157 3347 8.560355 ACAGTTCAGCATGTTTTACATATGTA 57.440 30.769 11.62 11.62 36.53 2.29
3158 3348 7.362056 GGACAGTTCAGCATGTTTTACATATGT 60.362 37.037 13.93 13.93 36.53 2.29
3159 3349 6.968904 GGACAGTTCAGCATGTTTTACATATG 59.031 38.462 0.00 0.00 36.53 1.78
3160 3350 6.886459 AGGACAGTTCAGCATGTTTTACATAT 59.114 34.615 0.00 0.00 36.53 1.78
3161 3351 6.237901 AGGACAGTTCAGCATGTTTTACATA 58.762 36.000 0.00 0.00 36.53 2.29
3180 3371 1.037579 ATGAGCCATCGACGAGGACA 61.038 55.000 11.71 8.54 0.00 4.02
3186 3377 2.349969 TTCCGGATGAGCCATCGACG 62.350 60.000 4.15 7.56 41.35 5.12
3203 3394 1.400846 CCATCACAGCAGCATCAGTTC 59.599 52.381 0.00 0.00 0.00 3.01
3211 3402 4.778534 AAATATATGCCATCACAGCAGC 57.221 40.909 0.00 0.00 44.90 5.25
3218 3409 7.469343 AGACATACCCAAAATATATGCCATCA 58.531 34.615 0.00 0.00 30.78 3.07
3220 3411 8.055181 CCTAGACATACCCAAAATATATGCCAT 58.945 37.037 0.00 0.00 30.78 4.40
3221 3412 7.238723 TCCTAGACATACCCAAAATATATGCCA 59.761 37.037 0.00 0.00 30.78 4.92
3228 3419 6.877668 TGTGTCCTAGACATACCCAAAATA 57.122 37.500 0.05 0.00 44.63 1.40
3229 3420 5.772393 TGTGTCCTAGACATACCCAAAAT 57.228 39.130 0.05 0.00 44.63 1.82
3230 3421 5.013704 ACATGTGTCCTAGACATACCCAAAA 59.986 40.000 0.00 0.00 44.63 2.44
3231 3422 4.534500 ACATGTGTCCTAGACATACCCAAA 59.466 41.667 0.00 0.00 44.63 3.28
3232 3423 4.101114 ACATGTGTCCTAGACATACCCAA 58.899 43.478 0.00 0.00 44.63 4.12
3233 3424 3.719871 ACATGTGTCCTAGACATACCCA 58.280 45.455 0.00 0.00 44.63 4.51
3234 3425 5.138276 TCTACATGTGTCCTAGACATACCC 58.862 45.833 9.11 0.00 44.63 3.69
3235 3426 6.265649 ACATCTACATGTGTCCTAGACATACC 59.734 42.308 9.11 0.00 44.63 2.73
3236 3427 7.278461 ACATCTACATGTGTCCTAGACATAC 57.722 40.000 9.11 0.00 44.63 2.39
3237 3428 8.847196 GTTACATCTACATGTGTCCTAGACATA 58.153 37.037 9.11 0.00 44.63 2.29
3238 3429 7.342026 TGTTACATCTACATGTGTCCTAGACAT 59.658 37.037 9.11 0.00 44.63 3.06
3239 3430 6.661805 TGTTACATCTACATGTGTCCTAGACA 59.338 38.462 9.11 3.61 43.54 3.41
3240 3431 7.096884 TGTTACATCTACATGTGTCCTAGAC 57.903 40.000 9.11 0.94 43.54 2.59
3241 3432 7.898014 ATGTTACATCTACATGTGTCCTAGA 57.102 36.000 9.11 2.84 43.54 2.43
3242 3433 8.417106 AGAATGTTACATCTACATGTGTCCTAG 58.583 37.037 9.11 0.00 43.54 3.02
3243 3434 8.306313 AGAATGTTACATCTACATGTGTCCTA 57.694 34.615 9.11 0.00 43.54 2.94
3244 3435 7.187824 AGAATGTTACATCTACATGTGTCCT 57.812 36.000 9.11 0.00 43.54 3.85
3245 3436 8.818057 GTTAGAATGTTACATCTACATGTGTCC 58.182 37.037 9.11 0.00 43.54 4.02
3246 3437 8.818057 GGTTAGAATGTTACATCTACATGTGTC 58.182 37.037 9.11 0.00 43.54 3.67
3247 3438 8.540388 AGGTTAGAATGTTACATCTACATGTGT 58.460 33.333 9.11 0.00 43.54 3.72
3248 3439 8.948631 AGGTTAGAATGTTACATCTACATGTG 57.051 34.615 9.11 0.00 43.54 3.21
3267 3458 9.950680 CCACAAACATAATGCTTATTAGGTTAG 57.049 33.333 9.56 4.92 39.24 2.34
3268 3459 9.469097 ACCACAAACATAATGCTTATTAGGTTA 57.531 29.630 9.56 0.00 39.24 2.85
3269 3460 8.361169 ACCACAAACATAATGCTTATTAGGTT 57.639 30.769 4.75 4.75 41.09 3.50
3270 3461 7.834181 AGACCACAAACATAATGCTTATTAGGT 59.166 33.333 0.00 0.00 33.13 3.08
3271 3462 8.225603 AGACCACAAACATAATGCTTATTAGG 57.774 34.615 0.00 0.00 0.00 2.69
3328 3519 7.394872 CAAAAATAACTACGCAGCAACAAAAA 58.605 30.769 0.00 0.00 0.00 1.94
3329 3520 6.019479 CCAAAAATAACTACGCAGCAACAAAA 60.019 34.615 0.00 0.00 0.00 2.44
3330 3521 5.460419 CCAAAAATAACTACGCAGCAACAAA 59.540 36.000 0.00 0.00 0.00 2.83
3331 3522 4.979197 CCAAAAATAACTACGCAGCAACAA 59.021 37.500 0.00 0.00 0.00 2.83
3332 3523 4.541779 CCAAAAATAACTACGCAGCAACA 58.458 39.130 0.00 0.00 0.00 3.33
3333 3524 3.917985 CCCAAAAATAACTACGCAGCAAC 59.082 43.478 0.00 0.00 0.00 4.17
3334 3525 3.821600 TCCCAAAAATAACTACGCAGCAA 59.178 39.130 0.00 0.00 0.00 3.91
3335 3526 3.413327 TCCCAAAAATAACTACGCAGCA 58.587 40.909 0.00 0.00 0.00 4.41
3336 3527 3.181500 CCTCCCAAAAATAACTACGCAGC 60.181 47.826 0.00 0.00 0.00 5.25
3337 3528 4.007659 ACCTCCCAAAAATAACTACGCAG 58.992 43.478 0.00 0.00 0.00 5.18
3338 3529 4.023726 ACCTCCCAAAAATAACTACGCA 57.976 40.909 0.00 0.00 0.00 5.24
3339 3530 5.876460 TCTAACCTCCCAAAAATAACTACGC 59.124 40.000 0.00 0.00 0.00 4.42
3340 3531 7.551617 ACATCTAACCTCCCAAAAATAACTACG 59.448 37.037 0.00 0.00 0.00 3.51
3341 3532 8.674607 CACATCTAACCTCCCAAAAATAACTAC 58.325 37.037 0.00 0.00 0.00 2.73
3342 3533 8.607713 TCACATCTAACCTCCCAAAAATAACTA 58.392 33.333 0.00 0.00 0.00 2.24
3343 3534 7.393515 GTCACATCTAACCTCCCAAAAATAACT 59.606 37.037 0.00 0.00 0.00 2.24
3344 3535 7.175990 TGTCACATCTAACCTCCCAAAAATAAC 59.824 37.037 0.00 0.00 0.00 1.89
3345 3536 7.235079 TGTCACATCTAACCTCCCAAAAATAA 58.765 34.615 0.00 0.00 0.00 1.40
3346 3537 6.785076 TGTCACATCTAACCTCCCAAAAATA 58.215 36.000 0.00 0.00 0.00 1.40
3347 3538 5.640147 TGTCACATCTAACCTCCCAAAAAT 58.360 37.500 0.00 0.00 0.00 1.82
3348 3539 5.055265 TGTCACATCTAACCTCCCAAAAA 57.945 39.130 0.00 0.00 0.00 1.94
3349 3540 4.715534 TGTCACATCTAACCTCCCAAAA 57.284 40.909 0.00 0.00 0.00 2.44
3350 3541 4.324254 GGATGTCACATCTAACCTCCCAAA 60.324 45.833 17.46 0.00 0.00 3.28
3351 3542 3.199946 GGATGTCACATCTAACCTCCCAA 59.800 47.826 17.46 0.00 0.00 4.12
3352 3543 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
3353 3544 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
3354 3545 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
3355 3546 8.561738 TTTTTAAGGATGTCACATCTAACCTC 57.438 34.615 17.46 0.00 0.00 3.85
3388 3579 9.722056 GGTCAAAATATATCAGTTTGTCACATC 57.278 33.333 7.79 0.00 41.74 3.06
3389 3580 8.397906 CGGTCAAAATATATCAGTTTGTCACAT 58.602 33.333 7.79 0.00 41.74 3.21
3390 3581 7.148323 CCGGTCAAAATATATCAGTTTGTCACA 60.148 37.037 0.00 0.00 41.74 3.58
3391 3582 7.148306 ACCGGTCAAAATATATCAGTTTGTCAC 60.148 37.037 0.00 2.01 41.74 3.67
3392 3583 6.882140 ACCGGTCAAAATATATCAGTTTGTCA 59.118 34.615 0.00 0.00 41.74 3.58
3393 3584 7.148306 ACACCGGTCAAAATATATCAGTTTGTC 60.148 37.037 2.59 3.81 41.74 3.18
3394 3585 6.657541 ACACCGGTCAAAATATATCAGTTTGT 59.342 34.615 2.59 0.00 41.74 2.83
3395 3586 6.966632 CACACCGGTCAAAATATATCAGTTTG 59.033 38.462 2.59 3.03 42.26 2.93
3396 3587 6.404293 GCACACCGGTCAAAATATATCAGTTT 60.404 38.462 2.59 0.00 0.00 2.66
3397 3588 5.065988 GCACACCGGTCAAAATATATCAGTT 59.934 40.000 2.59 0.00 0.00 3.16
3398 3589 4.574828 GCACACCGGTCAAAATATATCAGT 59.425 41.667 2.59 0.00 0.00 3.41
3399 3590 4.318760 CGCACACCGGTCAAAATATATCAG 60.319 45.833 2.59 0.00 0.00 2.90
3400 3591 3.558006 CGCACACCGGTCAAAATATATCA 59.442 43.478 2.59 0.00 0.00 2.15
3401 3592 3.805422 TCGCACACCGGTCAAAATATATC 59.195 43.478 2.59 0.00 37.59 1.63
3402 3593 3.799366 TCGCACACCGGTCAAAATATAT 58.201 40.909 2.59 0.00 37.59 0.86
3403 3594 3.248495 TCGCACACCGGTCAAAATATA 57.752 42.857 2.59 0.00 37.59 0.86
3414 3605 3.612919 CGATACCATCGCACACCG 58.387 61.111 0.00 0.00 46.55 4.94
3443 3636 1.423395 CTCGTGTCCAGCTCAAAGAC 58.577 55.000 0.00 0.00 0.00 3.01
3469 3667 2.749621 GGTGCACTAATTGGAGAACAGG 59.250 50.000 17.98 0.00 0.00 4.00
3506 3704 3.931907 ACCAAAGCATAGATAGGTGCA 57.068 42.857 0.00 0.00 43.63 4.57
3509 3707 4.202264 CGAGGAACCAAAGCATAGATAGGT 60.202 45.833 0.00 0.00 0.00 3.08
3510 3708 4.310769 CGAGGAACCAAAGCATAGATAGG 58.689 47.826 0.00 0.00 0.00 2.57
3511 3709 3.743396 GCGAGGAACCAAAGCATAGATAG 59.257 47.826 0.00 0.00 0.00 2.08
3512 3710 3.494398 GGCGAGGAACCAAAGCATAGATA 60.494 47.826 0.00 0.00 0.00 1.98
3540 3738 0.667993 CGTGTTGCCTTGTGTCCAAT 59.332 50.000 0.00 0.00 0.00 3.16
3541 3739 0.678366 ACGTGTTGCCTTGTGTCCAA 60.678 50.000 0.00 0.00 0.00 3.53
3571 3769 2.131709 CCTAGGATCCAACGGCCGA 61.132 63.158 35.90 10.13 0.00 5.54
3574 3772 1.227674 CTGCCTAGGATCCAACGGC 60.228 63.158 24.24 24.24 41.06 5.68
3600 3798 4.618927 GCATGTCAAAAGAGCAAGGCAATA 60.619 41.667 0.00 0.00 0.00 1.90
3601 3799 3.863400 GCATGTCAAAAGAGCAAGGCAAT 60.863 43.478 0.00 0.00 0.00 3.56
3602 3800 2.546373 GCATGTCAAAAGAGCAAGGCAA 60.546 45.455 0.00 0.00 0.00 4.52
3664 3862 1.613437 CCATCCAAGCAAAAGAACGGT 59.387 47.619 0.00 0.00 0.00 4.83
3665 3863 1.885887 TCCATCCAAGCAAAAGAACGG 59.114 47.619 0.00 0.00 0.00 4.44
3666 3864 2.554032 ACTCCATCCAAGCAAAAGAACG 59.446 45.455 0.00 0.00 0.00 3.95
3667 3865 4.279420 AGAACTCCATCCAAGCAAAAGAAC 59.721 41.667 0.00 0.00 0.00 3.01
3668 3866 4.473444 AGAACTCCATCCAAGCAAAAGAA 58.527 39.130 0.00 0.00 0.00 2.52
3670 3868 4.522022 AGAAGAACTCCATCCAAGCAAAAG 59.478 41.667 0.00 0.00 0.00 2.27
3671 3869 4.473444 AGAAGAACTCCATCCAAGCAAAA 58.527 39.130 0.00 0.00 0.00 2.44
3672 3870 4.074970 GAGAAGAACTCCATCCAAGCAAA 58.925 43.478 0.00 0.00 39.53 3.68
3673 3871 3.679389 GAGAAGAACTCCATCCAAGCAA 58.321 45.455 0.00 0.00 39.53 3.91
3674 3872 2.354103 CGAGAAGAACTCCATCCAAGCA 60.354 50.000 0.00 0.00 42.18 3.91
3675 3873 2.275318 CGAGAAGAACTCCATCCAAGC 58.725 52.381 0.00 0.00 42.18 4.01
3676 3874 3.601443 ACGAGAAGAACTCCATCCAAG 57.399 47.619 0.00 0.00 42.18 3.61
3680 3878 2.498078 AGGGAACGAGAAGAACTCCATC 59.502 50.000 0.00 0.00 42.18 3.51
3683 3881 1.893801 TGAGGGAACGAGAAGAACTCC 59.106 52.381 0.00 0.00 42.18 3.85
3687 3885 2.548067 GCAGTTGAGGGAACGAGAAGAA 60.548 50.000 0.00 0.00 39.80 2.52
3691 3889 0.033504 GTGCAGTTGAGGGAACGAGA 59.966 55.000 0.00 0.00 39.80 4.04
3699 3897 0.687354 AGTGGGTAGTGCAGTTGAGG 59.313 55.000 0.00 0.00 0.00 3.86
3706 3904 2.635427 TGAATGTACAGTGGGTAGTGCA 59.365 45.455 0.00 0.00 34.93 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.