>input_sequence_44408
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-------------------------------------------------------------GGCATCG------------
GAGAGATAGATAGACACGGAAAGGAAGCGACTTTGCTGGTAGCTTCGTGAGCCGAGCGGGAACGCCGAGCGGAGCGGGCG
GCAGCGCTGGCGAGGCTGATGGTCCACCAGGACGAAGGCTCCTCCTCGTCGGTCACCTCCTCCCCGCTCCAGAACTTCTC
CAACATGCCGCTCCACCCGCACCCTGGCGCC---------------GGCGCCACG---------------CCGCCCTGGA
TGCTCCGGGAGCTCCGCTCCGACGAGCGCGGCCTCTGCCTCATCCACCTCCTGCTCAACTGCGCCGCCGCCGCCTCCGCC
GGCCGGCTCGACGCCGCCAACGCCGCGCTCGAGCACATCGCGACCCTGGCCGCGCCCGACGGCGACGCCATGCAGCGCGT
CGCCGCCGCCTTCGCGGAGGCGCTGGCCCGGCGCGCGCTCCGTGCGTGGCCCGGCCTCTGCCGGGCGCTGCTCCTGCCCC
GCGCGGGCCCCACGCCGGCCGAGGTCGCCGTCGCGCGTCGCCACTTCCTCGACCTCTGCCCCTTCCTCCGCCTCGCCGGG
GCAGCTGCCAACCAGGCGATCCTCGAGGCGATGGAGTCGGAGAAGATCGTCCACGTCATCGACCTCGGCGGCGCCGACTC
CACGCAGTGGCTCGAGCTGCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCCCACTTCCGCCTCACCGCCGTGCACG
AGCACAAGGACCTGCTCTCGCAGACGGCCATGGCGCTCACCAAGGAGGCGGAGCGGCTGGACGTGCCGTTCCAGTTCAAC
CCGGTGGTGTCCCGCCTGGACGCGCTGGACGTGGAGTCCCTCCGCGTGAAGACCGGCGAGGCGCTGGCCATCAGCTCCAG
CCTGCAGCTCCACCGCCTGCTCGCCACCGACGACGACA------CCTCCTCCGCCGCCCCAGCCGACAAGGAGCGGCGTC
G---GAGCAGCCCGGACTCGTCGGGGCTGCTGTCCCCGTCCACCTCGCGGGCGGACGCGTTCCTGGGCGCGCTGTGGGGG
CTGTCGCCCAAGGTGATGGTGGTTTGCGAGCAGGAGGCGAGCCACAACACGGCGGGGCTGACGGAGCGGTTCGTGGAGGC
GCTCAACTACTACGCGGCGCTGTTCGACTGCCTGGAGGTGGGCGCGGCGCGCGGGTCCGTGGAGCGCGCGCGCGTCGAGC
GGTGGCTCCTGGGCGAGGAGATCAAGAACATCGTGGCCTGCGACGGCGCGGACCGCCGCGAGCGGCACGAGCGGCTGGAC
CGCTGGGCGGCGCGCATGGAGGGCGCCGGCTTCGGGCGCGTCCCGCTGAGCTACTACGCGCTGCTGCAGGCCCGCCGGGC
GGCGCAGGGGCTGGGCTGCGACGGCTTCAAGGTCCGCGAGGAGAAGGGCACCTTCTTCCTGTGCTGGCAGGACCGCGCCC
TCTTCTCCGTCTCCGCCTGGCGCGGCCGCCGCTTCGACTGACCGCCGGCCGGCCGGCCATGTCTGCCTGGACTCTGGGTT
CGATTTCACCACTACTAGTAGTACC---ACCC-TGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------GCGTCG
AAAATTTCATTTCTTCTTCTGATTGTTTTGTTTAGTACTCC--TACTTTGTTGTAGACCGAACTTGGGGCATGCATATGC
ATGCGCTGCTTGTTTTGGGCTGAACTTG-CTGCATGCGTACGCATGCCATGGGTGTGTGTC----TGTTGATAGTACT--
---------------GTGTATGCCTTCCCG------TTTTGGTTCGGATT------------------------------
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------------
>chr3A_1_TraesCS3A01G487500
GATGTAAAAGAAACTCAGAAGTTTTTATTACTCTGCTTGCTACAATTTTTGGAATTTACCGTACATCACCGCTCTCAGCT
TCGCTTTCTCTCACCTTCTCCTGCTTTGGTATTTTCTCCTTCAGAGAATGCTCGCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTACTGAATACTGAATACTGATGCATGCGTGCGTGCATGCATGCCCGA
CGAGTGCATGCAGAAATAAATGGCCCCGATTTTCCCTTTGTCCGCTCCGCTCCTCGCTCTGACCTGACGGGGACGGGGTG
AACTGTATCCTTGCTCCTCGCGCCATTGCCCCTTGTTGCAGTCCTCTCGGACCTCTGCCCTTTGTTCCTCTCTGCTTGTC
TCCTTCTCCT----------CCCTGCCGTGTCCTCCCACTCCTCTC-----TGCCTGGC---CTCCTCCACCCCCGTCTA
TTTAAGCCTCCTGCCTTGGTTTGTTCATTGGATTTCCCCTTTGCAGTTTGCACCACGCAGCAGCCACCCGCTCCGCAGCG
AGCCAAAACCTCAGAG--ACG-CCGCCGTATAAATCCTCCGTCGTCCACCACGCCACGGCCGGCATCG------------
GAGAGATAGATAGACACGGAAAGGAAGCGACTTTGCTGGTAGCTTCGTGAGCCGAGCGGGAACGCCGAGCGGAGCGGGCG
GCAGCGCTGGCGAGGCTGATGGTCCACCAGGACGAAGGCTCCTCCTCGTCGGTCACCTCCTCCCCGCTCCAGAACTTCTC
CAACATGCCGCTCCACCCGCACCCTGGCGCC---------------GGCGCCACG---------------CCGCCCTGGA
TGCTCCGGGAGCTCCGCTCCGACGAGCGCGGCCTCTGCCTCATCCACCTCCTGCTCAACTGCGCCGCCGCCGCCTCCGCC
GGCCGGCTCGACGCCGCCAACGCCGCGCTCGAGCACATCGCGACCCTGGCCGCGCCCGACGGCGACGCCATGCAGCGCGT
CGCCGCCGCCTTCGCGGAGGCGCTGGCCCGGCGCGCGCTCCGTGCGTGGCCCGGCCTCTGCCGGGCGCTGCTCCTGCCCC
GCGCGGGCCCCACGCCGGCCGAGGTCGCCGTCGCGCGTCGCCACTTCCTCGACCTCTGCCCCTTCCTCCGCCTCGCCGGG
GCAGCTGCCAACCAGGCGATCCTCGAGGCGATGGAGTCGGAGAAGATCGTCCACGTCATCGACCTCGGCGGCGCCGACTC
CACGCAGTGGCTCGAGCTGCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCCCACTTCCGCCTCACCGCCGTGCACG
AGCACAAGGACCTGCTCTCGCAGACGGCCATGGCGCTCACCAAGGAGGCGGAGCGGCTGGACGTGCCGTTCCAGTTCAAC
CCGGTGGTGTCCCGCCTGGACGCGCTGGACGTGGAGTCCCTCCGCGTGAAGACCGGCGAGGCGCTGGCCATCAGCTCCAG
CCTGCAGCTCCACCGCCTGCTCGCCACCGACGACGACA------CCTCCTCCGCCGCCCCAGCCGACAAGGAGCGGCGTC
G---GAGCAGCCCGGACTCGTCGGGGCTGCTGTCCCCGTCCACCTCGCGGGCGGACGCGTTCCTGGGCGCGCTGTGGGGG
CTGTCGCCCAAGGTGATGGTGGTTTGCGAGCAGGAGGCGAGCCACAACACGGCGGGGCTGACGGAGCGGTTCGTGGAGGC
GCTCAACTACTACGCGGCGCTGTTCGACTGCCTGGAGGTGGGCGCGGCGCGCGGGTCCGTGGAGCGCGCGCGCGTCGAGC
GGTGGCTCCTGGGCGAGGAGATCAAGAACATCGTGGCCTGCGACGGCGCGGACCGCCGCGAGCGGCACGAGCGGCTGGAC
CGCTGGGCGGCGCGCATGGAGGGCGCCGGCTTCGGGCGCGTCCCGCTGAGCTACTACGCGCTGCTGCAGGCCCGCCGGGC
GGCGCAGGGGCTGGGCTGCGACGGCTTCAAGGTCCGCGAGGAGAAGGGCACCTTCTTCCTGTGCTGGCAGGACCGCGCCC
TCTTCTCCGTCTCCGCCTGGCGCGGCCGCCGCTTCGACTGACCGCCGGCCGGCCGGCCATGTCTGCCTGGACTCTGGGTT
CGATTTCACCACTACTAGTAGTACC---ACCC-TGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------GCGTCG
AAAATTTCATTTCTTCTTCTGATTGTTTTGTTTAGTACTCC--TACTTTGTTGTAGACCGAACTTGGGGCATGCATATGC
ATGCGCTGCTTGTTTTGGGCTGAACTTG-CTGCATGCGTACGCATGCCATGGGTGTGTGTC----TGTTGATAGTACT--
---------------GTGTATGCCTTCCCG------TTTTGGTTCGGATTAGTGCATAGATTTTGGTAGGAATGATGAAG
TGATC------TGCCGATTGATCATCGATTGGA-TTGGATC---------------------------------T-TTGA
TCTTTCCGTTCGATCGAATCGAATCGTGCCCAAGAGGGCAGGCTGCA-TTTG-GTGAAAAGGGGACAAACCCAGATGCGA
TCGGTTCCTGATGAGTTAGGTAAAAGGC-TTGTGAGCCGAAC----------------GATTGAATGCTTTCTTGTCATC
CAAAGAAAGAAGGCGATTGCGGGACGCCAGCTGATGCCTCGGGTCGAATTCAACGCTTTCGTCGTCGTCTTAACTTTGTT
GAAATC----TAATTGACGGGTTAAGGGGAGAAATTTTTGGC-----TTGTCTGAACGACTGAACTTTCACG----GTCC
TGCACCGCCGGGGAGCTTGCGCTATGTTTCGG-ATTCACGCGTGATTTTTCATAGAAAATAGCATGTACAT-ATGTAAAA
CATGCTGAACTGTCCTCGTCGATGGCTCATCCGGAACTGATGCTGCTGTGATGGCATATATTTTGGGTATGTCTAGGACA
CATGTAGATGTAACATTCTAACCTAATAAGCATTATGTTTGTGGTCTATTTTTTTTGTCCTAGCTTTTTTTCTTTTGTTT
TTTGTTGCTGCGTAGTTATTTTTGGGAGGTTAGATGTGACATCCTTAAAAAACATCTAGATGTGACAAACTGATATATTT
TGACCGGTGTGCGATGGTATCGGC--TCACGAGCCGTCTTTGAGCTGGACACGAGCAT-----GGCCCTGTTCTCCAATT
AGTGCACCGCACAGTGGAGGAGTTGCACCTATCTATGCTTTGGTTCCTCGCCTTGTCATTGGACACAAGGCAACACGTGG
CGATGGCATCGGCCGTTGGATCCTAGGCAGCCAAAGCTATTGCCTTGCTCTTTTGACATGCGGCGGTGATTGAATCCATC
CACGGGATCCTCCTCTGCACCACCGTTCTTTTGCTTGGATGGAGTTCTTCTCGTTCCCTCAACTGCACTACCCACTGTAC
ATTCATGGCCAC
>chr3B_608
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-----------------------------------------------TACTGATCCATGCGTGCATGCATACATGCCCGA
CGAGCGCGTGCAGAAATAATAGGCCCTGATTTCCCCTTTGTCCGCTCCGCTCCTCGCTCTGACCCGA----------GTG
AATTGTATTCTTGTTCCTCGAGCCATTGCCCCTTGTTGCCGTCCTCTTGGACCTCTGCCCTTTGTTCCTCTCTGCTTGTC
TCCTTCTCTTCCCTGCCCTGCCCTGCCGTGTCCTCCCGCTCCTCTCCG-TCTGCTTGGC---CTGCTCCACACCCGTCTA
TTTAAGCCTGCTGTCTCGGTTTGTTAATTGGATTTCTCCTTTGCG-------CCACGCAGCACGCAGCCT-TCCGCAGCG
AGCCAAAACCTCTGAGCCACGGCCACCGTATAAATCGTCCGTCGTCCACCACGCGACGGCCGGCATCGGAGAGATAGATA
GATAGATAGATAGACACGGAAACGAAGCGACTTTGCTACTAGCTTCGTGAACCGAGCGGCATCGCCGAGCAGAGCGGGCG
GCAGCGCTGGCCAGGCTGATGGTCCACCAGGACGAAGGCTCCTCCTCGTCGGTCACGTCCTCCCCGCTGCAGAACTTCTC
AAACATGCCGCTCCACCCGCACCCGGGAGCC---------------GGCGCCGCGGGCGCCGGCGCCACGCCGCCCTGGA
TGCTCCGGGAGCTCCGCTCCGACGAGCGCGGCCTCTGCCTCATCCACCTCCTGCTCAACTGCGCCGCCGCGGCGTCGTCC
GGCCGGCTCGACGCCGCCAACGCCGCGCTCGAGCACATCGCCACGCTCGCCGCGCCCGACGGCGACGCCATGCAGCGCGT
CGCGGCCGCCTTCGCGGAGGCGCTGGCCCGGCGCGCGCTCCGTGCGTGGCCCGGGCTGTGCCGGGCGCTGCTCCTGCCCC
GCGCGGGCCCCACGCCGGCCGAGGTCGCCGTCGCGCGCAGGCACTTCTTCGACCTCTGCCCCTTCCTCCGCCTCGCCGGC
GCAGCGGCCAACCAGGCGATCCTCGAGGCCATGGAGTCGGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGC
CACGCAGTGGCTCGAGCTGCTCCACCTCCTCGCCGCGCGTCCCGAGGGCCCGCCGCACTTCCGCCTCACCGCCGTGCACG
AGCACAAGGACCTGCTCTCGAAGACGGCCATGGCGCTCACCAAGGAGGCGGAGCGGCTGGACGTGCCGTTCCAGTTCAAC
CCCGTGGTGTCCCGCCTGGACGCGCTGGACGTGGAGTCCCTCCGCGTGAAGACCGGCGAGGCGCTGGCCATCAGCTCCAG
CCTGCAGCTCCACCGCCTGCTCGCCACCGACGACGACA------CCCCCGCCGCCCCGACCGCCGACAAGGAGCGGCGCA
GGAAGAGCAGCCCGGACTCCTCCGGGCTGCTGTCCCCGTCCACCTCGCGGGCGGACGCGTTCCTGGGCGCGCTGTGGGGG
CTGTCGCCCAAGGTGATGGTGGTGGCGGAGCAGGAGGCGAGCCACAACACGCCGGGGCTGACGGAGCGGTTCGTGGAGGC
GCTCAACTACTACGCGGCGCTGTTCGACTGCCTGGAGGTGGGCGCGGCGCGCGGGTCGGTGGAGCGCGCGCGCGTCGAGC
GGTGGCTCCTGGGCGAGGAGATCAAGAACATCGTGGCCTGCGACGGCGCGGAGCGCCGCGAGCGGCACGAGCGGCTGGAC
CGGTGGGCGGCGCGCATGGAGGGCGCCGGCTTCGGCCGCGTGCCCCTCAGCTACTACGCGCTGCTGCAGGCCCGGCGGGC
GGCGCAGGGGCTGGGGTGCGACGGCTTCAAGGTACGCGAGGAGAAGGGCACCTTCTTCCTGTGCTGGCAGGAGCGCGCCC
TCTTCTCCGTCTCCGCCTGGCGCGGCCGCCGCTTCGACTGACCGCCGGCCCTG--------------------------T
CGATGTCACCACTACTAGTACCACCACAACCCATGGACATTAGCTAGCTAGCTAGGCGTTTCATCTTCATCATCACATCT
AAAATTCCATTTCTTCTTCGGATTGTTTTGTTTAG-----------TTTGTTGTAGACTGAACTTGGGGCATGCATATGC
ATGCGCTGCTTGTTTTGGACCAAACTTG-CTGCATGCGTACGCATGCTCC----GTGTGTC----TGTCCATACTGCTCG
TGTGTGTGTGTGTGTGTGTGTCCCTTCCCC------TGTTGGTTCGGATCAGTGCACAGATTTCAGCAGGAATGATGAAG
TGGTCGATCCATGCGGA-----------------TTGGATCGTCTGGTGGTTTATCTATCTA--TCTAACTGTCAATCTA
TATTTCCATTCGATCGAATCCT-TCGTGCCTAAGAGGGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACCCAGATGCAA
ATC-----------GTTAGGTAAGGCTAATTGTGAGCCGCATGACTCACAAGACGGCTGATTGAGAACTTTGTTTTCATC
----GAAAGAAGGTGATTACGGGACGCCAGTTGATGCCTCTGGTCGGATCCAACGCTT---ACGTCTTGTTAACTTTGTT
GAAATCTACGTAATTGTCGGGTTAAGGGGAGAAATTTGTTGCTTGCGTTGTCTGAACGACTGAACTTTCAGGGCACGTAC
TGCACCTCTGGGGACCTTCCGCTATGTTTCCAG-TTCACGCATGATTTTTCATACTACTTTT-------TAGATGTAAAA
CATGCTGAGCCGTCCTTGTCGATGGCTCATCCAAAACTGATCCTGCTGGCTGGGCATA----------------------
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>chr3D_626
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-----------------------------------------------------------------TGCATGCGTGCCCGA
CGAATGCATGCAGAAATAAATGGCCCTGATTTCCCCTTTGTCCGCTCC-----TCGCTCTGACCAGA----------GTG
AATTGTATTCTTGTTCCTCGAGCCATTGCCTCTTGTTGCCGTCCTCTTGGACCTCTGCCGCTTGTTCCTCTCTGCTTGTT
TCCTTCCCTT----------CCCTGCCGTGTCCTCCCACTCCTCTCCTCTCTGCTTGGCCTACTCCTCCACACCCGTCTA
TTTAAGCCTGCTGCCTTGGTTTGTTAATTGGATTTCTCCTTTGCAGTTTGCATCAGT--------AGCCT-TCCGCAGCG
AGCCAACACCTCAGAG--ACGGCCGCCGTATAAATCCTCCGTCATCCACCACGCCACGGCCGGCATCGGAGAGATAGATA
GATAGATAGATAGACACGGAAAGGAAGCAAGTTTGCTAGTAGCTTCGTGAGCCGAGCGGGATCGCCGAGCAGAGCGGGCG
GCAGCGCTGGCGAGGCTGATGGTCCACCAGGACGAAGGCTCCTCCTCGTCGGTCACCTCCTCCCCGCTGCACAACTTCTC
CAACATGCCGCTCCACCCGCACCCTGGCGCGAACGGCGCCGGCGCAGGCGCCACG---------------CCGCCCTGGA
TGCTCCGGGAGCTCCGCTCCGACGAGCGCGGCCTCTGCCTCATCCACCTCCTGCTCAACTGCGCCGCCGCGGCCTCGGCC
GGCCGGCTCGACGCCGCCAACGCCGCGCTCGAGCACATCGCCACGCTCGCGGCGCCCGACGGGGACGCCATGCAGCGCGT
CGCCGCGGCCTTCGCGGAGGCGCTGGCCCGGCGCGCGCTCCGTGCGTGGCCCGGGCTGTGCCGCGCGCTGCTCCTGCCCC
GCGCGGGCCCCACGCCCGCCGAGGTCGCCGTCGCGCGCCGACACTTCTTGGACCTCTGCCCCTTCCTCCGCCTCGCCGGC
GCGGCGGCCAACCAGGCGATCCTCGAGGCCATGGAGTCGGAGAAGATCGTGCACGTCATCGACCTCGGCGGCGCCGACGC
CACGCAGTGGCTCGAGCTGCTCCACCTCCTCGCCGCGCGCCCCGAGGGCCCGCCGCACTTCCGCCTCACCGCCGTGCACG
AGCACAAGGACCTGCTCTCGCAGACGGCCATGGCGCTCACCAAGGAGGCGGAGCGGCTGGACGTGCCGTTCCAGTTCAAC
CCCGTGGTGTCCCGCCTGGACGCGCTGGACGTTGAGTCCCTCCGCGTGAAGACCGGCGAGGCGCTGGCCATCAGCTCCAG
CCTGCAGCTCCACCGCCTGCTCGCCACCGACGACGACTCCATCCCCGCCGCAGCCGCGGCCGCCGACAAGGACCGGCGCA
GGAAGAGCAGCCCGGACTCGTCGGGGCTGCTGTCCCCGTCGACCTCCCGGGCCGACGCGTTCCTGGGGGCGCTGTGGGGG
CTGTCGCCGAAGGTGATGGTGGTGGCGGAGCAGGAGGCGAGCCACAACACGCCGGGGCTGACGGAGCGGTTCGTGGAGGC
GCTCAACTACTACGCGGCGCTGTTCGACTGCCTGGAGGTGGGCGCGGCGCGCGGGTCGGTGGAGCGCGCGCGCGTCGAGC
GGTGGCTCCTGGGCGAGGAGATCAAGAACATCGTGGCCTGCGACGGCGCGGAGCGCCGCGAGCGGCACGAGCGGCTGGAC
CGGTGGGCGGCGCGCATGGAGGGCGCCGGCTTCGGGCGCGTGCCGCTGAGCTACTACGCGCTGCTGCAGGCCCGGCGGGC
GGCGCAGGGGCTCGGGTGCGACGGCTTCAAGGTCCGCGAGGAGAAGGGCACCTTCTTCCTCTGCTGGCAGGACCGCGCCC
TCTTCTCCGTCTCCGCATGGCGCGGCCGCCGCTTCGACTGACCGCCGGCCGGGC--------------GGACTCTGGATT
CGATTTCACCGCTACTAGTACCACC---ACCCATGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------GCATCT
GAAATTCCATTTCTTCTTCTGATTGTTTTGTTTAGTAGTACTATGTTATGTTGTAGACTGAACTTGGGGCATGCATATGC
ATGCGCTGCTTGTTTTGGGCTGAACTTG-CTGCATGCGTACGCATGCCATGGGTGTGTGTC----TGTTCATAGTACTCC
ATA----------GTGTGCGTGCCTTCCCG------TTTTGGTTCGGATTAGTGCATAGATTTTGGCAGGGATGATGAAG
TGATCGATCTATGCGGATTGAC--------GGG-TTGGATCGCTTGGTGGTTTATCTATCTA--ACTGTCTATGT-TTGA
TCTTTCCATTC-----AATCGAA-----CCCAAGAGGGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACCCAGATGCGA
TCAGTTCCTGACGAGTTACGTAAGGCTAATTGTGAGCCGAATGACTGACAAGAGGGCTGATTGAAAACTTTCTGGTCATC
GAAAGAAAGAAGGCGATTACGGGACGCCAGCTGATGCCTCGTGTCGAATTCAACAATT---TCGTCTTCTTGACTTTGTT
GAAATC----TAATTGTCGGGGTAAGGGGAGAAATTGCTGGC-----TTGTCTGAACGACTGAACTTTCAGGGCAC----
TGCACCTCTGGGGAGCTTCCGCTACGTTTTGCCATTCACGCTTGATTTTTCAGAGAAAAGTAGTATAGATAGATGTAAAA
CATGCTGAACCGTCCTTGTCGATGGCTCATCCGAAACTGATCGTGCCGGGCAC---------------------------
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--------------------------------------------------------------------------ATATTT
TGACAAGTGTGCGATGTTATCAGCTATCACGAGCCATCTTTGAGCTGGACACGAGCATAGCATGGCACTGTTCTCCAATT
AGTGCACCGCACAGTGGAGGAGTAGC----ATCTATGCTTTGGTTCCCCGTCTTGTCCATGGACACAAGGCAACACGTGG
CGATGGCACCGTCCGTTGGATCCCACGCAGCCAAAGCCGCTGCCTTGCTCTTTTGACATGCGGCGGTGATTGAATCCATC
CACGGGATCCTCCTCTGCACCGTTCGT-------TTGCATCGAGCTCTCCTCGTTCTCTCAACCGCACTACCAGCTGTAT
AGTTTCATGGC-
>chr6D_2225
CGCGGA--------------------------------------------------------------------------
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-------------------------------------------------------------GCGGCACGAGTGGCTGGAC
CGCTGGGCGGCGCGCATGGAGGGCGCCTGCTTCGGGCGCGTCCCGCTGAGCTAATACGCGCTGCTGCAGGCGCGGCGGGC
-----------TGGGCTGCGTCAGCTTTAAGGTCTGCG------------------------------AGGACCGCGCCC
TCTTCTCCGTCTCCACCTGGCGCGGCCGCCGCTTCAACTGCCCGCCGGCCGGCC----CTGTCCT-CTGGACTCTGGATT
CGATTTCACCACTACTGGTAGTACT---ACCCATGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------ACATCC
GAAATTTCATTTCTTCTTTTGATTGTTTCGTTG-------C--TACTCTGTTGTAGACTGAATTTGGGG---------GC
ATGCGCTGCTTGTTTTGGACTGAACTTGGGGG---GCGTACCCATGCCATGGGTGTGTGTC----TGTTCATAATAGG--
---------------GT-----GCGTGCCTTCCCTTTTTTGGTTCAGATTAGTGCATAGATTTTGGCAGGAAAGATGAAG
TGATG------TGCGGATTGATCATCGATTAGA-TTGGATGGTTTGGTGGTTTATCTATCTA--ACTGT----GT-TCGA
TCTTTCCATTC-----GATCGAATCGTGCCCAAGAGGGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACCCAGATGCAA
TCAGGTCCTGATGAGTTCGGTAAGGCTAATTGTGAGCCGAATGACTGACACGAGGGCTGATTGAAAGCTTTCTTGTCATC
ATAAGAA----GGCGATTACGGTACGCTAGTTGATGCCTCGGGACGAATTCAACGCTT----------------------
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>chr6B_2253
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----GGGAGGAGCGCATGGAGGGCACCGGCTTCTGGTGCGTCCCGCTGAGCTACTACGCGCTCTTGCAGGCACGGCGGGC
GGCGCAGGGGCTGGGCTGCGACGGCTTTAAGGTCCGCGTGGAGAAGGGCACCTTCTTCCTGTGCTGGCAGGACCGCGCCC
TCTTCTCCGTCTCCGCCTGGCGCCGCCGCCGCTTTGACTGACCGCCGGCCGGCC----CTGTTGTT-TGGACTCTGGATT
CAATTTCACCACTACTAGTAGTACC---ACCCATGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------ACATCC
AA-----------TTCTTCTAATCATTTCGTTG-------G--TACTCTGTTGTAGACTAAAGTTGGGACTTGCATATGC
ATGCGCTGCTTGTTTTGGTCTGAACTTG-CTGCATGCGTACGCATGCCATGGGTGTGTGTGTGTGTGTTCATAGTAGT--
---------------GT-----CCTTCCCG------TTTTGGTTCAGATTAGTGCATAGATTTTGGCAGGAATGATGAAC
T----------TGCCGATTGATCATCAATTGGA-TTGGATGGTTTGGTGGTTTATCTATCTA--ACTGT----GT-TTGA
TCTTTCCATTC-----GATCGAATCGAGCCCAAGAGGGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACC-AGATGCAA
TCAGGTCCTGATGAGATCAGTAAGGCTAATTGTGAGCCGAATGACTGACACAAGGGCTGATTGAAAGCTTTCATGTCATA
ATAAGAA----GGCGATTACGGTACGCCAGCTGATGCCTCATGTCGAATTCAATGCTTTCG-------------------
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>chr6B_2397
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--------------------------------------------------------------------AGGACCGTGCCC
TGTTCTCCGTCTCCGCCTGGCACGGCCGCCGCTTCGACTGCCCGCCGGCCGGCC----CTGTCCT-ATGG--TCTGGATT
CGATTTCACTACTACTGGTAATACC---ACCCATGGACATTAGCTAGCTAGCTAGGCATTTCATC---------ACATCC
AAAATCTCATTTCTTCTTCTGATTGTTTCGTCG-------G--TACTCTATTGTAGACTGAATTTGGGG---------GC
ATGCCCTGCTTGTTTTGGACTGAACTTG-GGG---GCGTACCCATGCCATGGGTGTGTGTC----TGTTCATAGCAGG--
---------------GT-----GCATGCCTCCCCGTTTCTGGTTCAGATTAGTGCATAGATTTTTGCAGGAATGATGAAG
TGATC------TGCCGATTGATCATCGATGGGATTTGGATGGTTTGGTGGTTTATTTTTCTATAACTGT----GT-TTGA
TCTTTCCATTC-----AATTGAATCGTGCCCAAGACAGCAGGTTGCATTTTG-GTGAAAAGGGGATAAACCCAGATGCAA
TTAGGTCCTGATGAGTTCGGTAAAA-------------------------------------------------------
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>chr4B_2397
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--------------------------------------------------------------------AGGACCACGCCC
TGTTCTCCGTCTCCGCCTGGCGCGGCCGCCGCTTTGACTGCCCGCAGGTCGGCC----CTGTCCT-ATGG--TCTAGATT
CGATTTCATCACTACTGGTAATACC---ACCCATGGACATTAGCTAGCTAGCTAGGCGTTTCATC---------ACATCT
AAAATCTCATTTCTTCTTCTGATTGTTTCGTTG-------G--TGCTCTGTTCTAGACTGAATTTGGGG---------GC
ATGCCCTGCTTGTTTTGGACTAAACTTT-GGG---GCGTACCCATGCCATGGGTGTGTGGC----TGTTCATAGCAGG--
---------------GT-----GCGTACCTCCCCGTTTCTGGTTCAGATTAGTGCATAGATTTTTGCAGGAATGATGAAG
CGATC------TGCCGATTGATCATCAATGGGATTTGGATGGTTTGGTGGTTTATTTTTCTGTAACTGT----GT-TTGA
TCTTTCCATTC-----AATCGAATCGTGCCCAAGAGAGCAGGTTGCA-TTTTCGTGAAAAGGGGATAAACCGAGATGCAA
TCAGGTCCTGATGAGTTCGGTAAAA-------------------------------------------------------
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>chr4B_2397
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--------------------------------------------------------------------AGGACCCCGCCC
TCTTCTCCGTCTTCGCCGAGCGTGGCCGCCGCTTCGACTGCCCGCCGACCGGCC----CTGTCCT-ATGGACTCTGGATT
CGATTTCACCACTACTTGTAATACC---ACCCATGGACATTAGCTAGCTAGCTAGGTGTTTCATC---------ACATGC
AAGATCTCATTTCTTCTTTTGATTGTTTCGTTG-------G--TACTCTGTTGTAGACTGAATTTGGGG---------GC
ATGCACTGCTTGTTTTGGACTGAACTTG-GTG---GCGTACCCATGCCAGGGGTGTGTGTC----TGTTCATAGCAGG--
---------------GT-----GCGTGCCTCCCCGTTTCTGGTTCAAATTAGTGCATAGATTTTTGCAGGAATGATGAAG
TGATC------TGCCGATTGATGATGAATGGGATTTGGATGGTTTGGTGGTTTATCTATCTATAACTAT----GT-TTGA
TATTTCCATTC-----AATCGAATCGTGCCCAAGAGTGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACCCAGATGCAA
TTAGGTCCTGATGAGTTCGGTAAAA------------------------------------------CTTTCTTGTCATC
ATAAGAA----GGCGATTATGGTACGCCAGCTGATGCCTCGGGTCGAATTCAATGCTTTC--------------------
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>chr5A_2452
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-------------------------------------------GCCTGCCGGCCGACCCTGTCCT-CTGGACTCTGGATT
CGATTTCACCACTACTAGTAGTACC---ACAGGTGAACATTAGCTACCTAGCTAGGCGTTTCATC---------ACATCC
AAAATTCCATTTCTTCTTCTGATTATTTCATTG-------G--TACTCTGTTGTAGACTGAATTTGGGG---------GC
ATGCACTGCTTGTTTTGGATTGAACTTGGGGCGTAC----CCCATGCCATGGGTGTGTGTC----TTTTCATTGTAGG--
---------------GT-----GCGTGCCTTCCCGTTTTTGGTTCAGATTAGTGCATAGATTTTGGCAGGAATGATGAAG
TGATC------TGCTGATTGATCATCGATTGGA-TTGGATGGTTTGGTGGTTTATCTGTCTA--ACTGT----GT-TTGA
TCTTTCCATTC-----GATCGAATCGTGCCCAAGAGGGCAGGTTGCA-TTTG-GTGAAAAGGGGATAAACCCAGATGCAA
TCAGGTCCTGATGAGTTCGGTAAGGCTAATTGTGAGCCGAATGACTGGCACTAGGGCGGATTGAAAGCTTTCTTGTCATC
ATAAGAA----GGCAATTACGGTATGCCAGCTGATGCCTCGGGTCGAATTCAACGCTTTC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------S---------------
--------------------------S-----S-------------------------------S--SSSSSSSSSS---
--S-----S----S------S------------------S-------S--------------------------------
--------S---------------------------------------------S----------------S--------
---------S---------------S----------S-------------------------SS--S--SS---------
--------------------------------------------------------------------------------
--S----------------------------------S-----------------------S--------S---------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S-----S---
-----------------------------------------S--S--S--------------------------------
------------------------------------------------------S--S----------------------
-------------------------------------S--S------S-------------------------------S
-----S-----------------------S--------------------S---------------------------S-
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------S--S-------SS-S-----------------SS
--------------------------------------------------------------------------------
-----------------------SSSS------------------------S----------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------------------------S--S----SSS-----------S--
----------------------------------------------------------------------------S--S
-------------------------------------S-S------------------S---------------------
---------------------------------------------------------------------S----------
-------------------S----------------------------------------------S-------------
--------------------------------------------------------------------------------
-------S----------------------------------S----------------------S--------------
--S----------------------SSS-------------S-----------------------S--------------
S-----------------S-----------------------------------------------S-------------
----------------S--------------------S--------------------------------S-------S-
------S-S---------S------------S---------S------------------SSSSSSSSSSS---------
----------S-----S----------------S-------S------S-SS------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----SS----------S----S-------------S------------------------------S-------------
-----------------------S--SSSS-----------------S--S------SS---------------------
--------S--S-----------S-S-----------SSS----------------------------------------
---------------------SSSSS-SSSSSSS---S--S---S---S-------S------S--------SS-----S
-S-SSSSSSSSS
>forward_82
--------------------------------------------------------------ACATCACCGCTCTCAGCT
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>reverse_1561
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCACTTCCTCGACCTCTGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_729
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGGACGGGGTG
AACTGTATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCTGGACTCTGGGTT
CGATT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_2107
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CCAAGGTGATGGTGGTTTGC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TCTCGTTCCCTCAACTGCAC------------
------------
