Multiple sequence alignment - TraesCS3A01G482800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G482800 | chr3A | 100.000 | 1786 | 0 | 0 | 662 | 2447 | 713343021 | 713341236 | 0.000000e+00 | 3299.0 |
1 | TraesCS3A01G482800 | chr3A | 87.744 | 1534 | 159 | 20 | 904 | 2427 | 713308305 | 713306791 | 0.000000e+00 | 1764.0 |
2 | TraesCS3A01G482800 | chr3A | 82.536 | 836 | 121 | 20 | 1341 | 2170 | 713417774 | 713416958 | 0.000000e+00 | 712.0 |
3 | TraesCS3A01G482800 | chr3A | 100.000 | 317 | 0 | 0 | 1 | 317 | 713343682 | 713343366 | 9.750000e-164 | 586.0 |
4 | TraesCS3A01G482800 | chr3A | 88.725 | 408 | 46 | 0 | 904 | 1311 | 713418178 | 713417771 | 1.310000e-137 | 499.0 |
5 | TraesCS3A01G482800 | chr3A | 84.783 | 230 | 28 | 3 | 84 | 307 | 713308632 | 713308404 | 8.810000e-55 | 224.0 |
6 | TraesCS3A01G482800 | chr3A | 89.922 | 129 | 12 | 1 | 80 | 208 | 713419085 | 713418958 | 5.410000e-37 | 165.0 |
7 | TraesCS3A01G482800 | chr3A | 87.402 | 127 | 14 | 2 | 757 | 882 | 334690550 | 334690425 | 7.050000e-31 | 145.0 |
8 | TraesCS3A01G482800 | chr3A | 88.571 | 105 | 9 | 1 | 206 | 307 | 713418381 | 713418277 | 9.190000e-25 | 124.0 |
9 | TraesCS3A01G482800 | chr3D | 86.931 | 1561 | 171 | 25 | 904 | 2447 | 577668783 | 577667239 | 0.000000e+00 | 1722.0 |
10 | TraesCS3A01G482800 | chr3D | 88.791 | 910 | 85 | 10 | 904 | 1811 | 578040999 | 578041893 | 0.000000e+00 | 1099.0 |
11 | TraesCS3A01G482800 | chr3D | 86.616 | 919 | 89 | 12 | 904 | 1818 | 577752813 | 577751925 | 0.000000e+00 | 985.0 |
12 | TraesCS3A01G482800 | chr3D | 86.196 | 920 | 92 | 14 | 904 | 1818 | 577779686 | 577778797 | 0.000000e+00 | 963.0 |
13 | TraesCS3A01G482800 | chr3D | 83.025 | 595 | 83 | 13 | 1845 | 2435 | 578041894 | 578042474 | 7.750000e-145 | 523.0 |
14 | TraesCS3A01G482800 | chr3D | 89.205 | 176 | 16 | 3 | 732 | 905 | 188626241 | 188626067 | 1.470000e-52 | 217.0 |
15 | TraesCS3A01G482800 | chr3D | 91.589 | 107 | 9 | 0 | 206 | 312 | 577779880 | 577779774 | 5.450000e-32 | 148.0 |
16 | TraesCS3A01G482800 | chr3D | 87.619 | 105 | 9 | 2 | 206 | 307 | 578040809 | 578040912 | 4.270000e-23 | 119.0 |
17 | TraesCS3A01G482800 | chr3B | 85.973 | 1547 | 170 | 22 | 904 | 2435 | 771241944 | 771243458 | 0.000000e+00 | 1611.0 |
18 | TraesCS3A01G482800 | chr3B | 89.157 | 913 | 85 | 12 | 904 | 1811 | 770964774 | 770963871 | 0.000000e+00 | 1125.0 |
19 | TraesCS3A01G482800 | chr3B | 85.379 | 725 | 55 | 28 | 904 | 1622 | 771178410 | 771179089 | 0.000000e+00 | 704.0 |
20 | TraesCS3A01G482800 | chr3B | 95.098 | 102 | 5 | 0 | 206 | 307 | 770964977 | 770964876 | 7.000000e-36 | 161.0 |
21 | TraesCS3A01G482800 | chr3B | 95.098 | 102 | 5 | 0 | 206 | 307 | 771178207 | 771178308 | 7.000000e-36 | 161.0 |
22 | TraesCS3A01G482800 | chr3B | 93.137 | 102 | 7 | 0 | 206 | 307 | 771241741 | 771241842 | 1.520000e-32 | 150.0 |
23 | TraesCS3A01G482800 | chr5A | 92.025 | 163 | 11 | 2 | 750 | 912 | 706935246 | 706935086 | 6.810000e-56 | 228.0 |
24 | TraesCS3A01G482800 | chr4A | 87.640 | 178 | 19 | 3 | 730 | 905 | 335689491 | 335689667 | 1.150000e-48 | 204.0 |
25 | TraesCS3A01G482800 | chr2A | 90.260 | 154 | 13 | 2 | 732 | 884 | 239911655 | 239911503 | 1.480000e-47 | 200.0 |
26 | TraesCS3A01G482800 | chr7A | 89.103 | 156 | 15 | 2 | 750 | 905 | 645406315 | 645406162 | 2.480000e-45 | 193.0 |
27 | TraesCS3A01G482800 | chr7D | 83.146 | 178 | 28 | 2 | 730 | 907 | 379740494 | 379740669 | 7.000000e-36 | 161.0 |
28 | TraesCS3A01G482800 | chr6A | 84.663 | 163 | 23 | 1 | 743 | 905 | 415388048 | 415388208 | 7.000000e-36 | 161.0 |
29 | TraesCS3A01G482800 | chr6D | 90.909 | 110 | 9 | 1 | 796 | 905 | 173359074 | 173358966 | 1.960000e-31 | 147.0 |
30 | TraesCS3A01G482800 | chr4D | 71.002 | 469 | 105 | 24 | 1897 | 2356 | 497237400 | 497236954 | 1.560000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G482800 | chr3A | 713341236 | 713343682 | 2446 | True | 1942.500000 | 3299 | 100.000000 | 1 | 2447 | 2 | chr3A.!!$R3 | 2446 |
1 | TraesCS3A01G482800 | chr3A | 713306791 | 713308632 | 1841 | True | 994.000000 | 1764 | 86.263500 | 84 | 2427 | 2 | chr3A.!!$R2 | 2343 |
2 | TraesCS3A01G482800 | chr3A | 713416958 | 713419085 | 2127 | True | 375.000000 | 712 | 87.438500 | 80 | 2170 | 4 | chr3A.!!$R4 | 2090 |
3 | TraesCS3A01G482800 | chr3D | 577667239 | 577668783 | 1544 | True | 1722.000000 | 1722 | 86.931000 | 904 | 2447 | 1 | chr3D.!!$R2 | 1543 |
4 | TraesCS3A01G482800 | chr3D | 577751925 | 577752813 | 888 | True | 985.000000 | 985 | 86.616000 | 904 | 1818 | 1 | chr3D.!!$R3 | 914 |
5 | TraesCS3A01G482800 | chr3D | 578040809 | 578042474 | 1665 | False | 580.333333 | 1099 | 86.478333 | 206 | 2435 | 3 | chr3D.!!$F1 | 2229 |
6 | TraesCS3A01G482800 | chr3D | 577778797 | 577779880 | 1083 | True | 555.500000 | 963 | 88.892500 | 206 | 1818 | 2 | chr3D.!!$R4 | 1612 |
7 | TraesCS3A01G482800 | chr3B | 771241741 | 771243458 | 1717 | False | 880.500000 | 1611 | 89.555000 | 206 | 2435 | 2 | chr3B.!!$F2 | 2229 |
8 | TraesCS3A01G482800 | chr3B | 770963871 | 770964977 | 1106 | True | 643.000000 | 1125 | 92.127500 | 206 | 1811 | 2 | chr3B.!!$R1 | 1605 |
9 | TraesCS3A01G482800 | chr3B | 771178207 | 771179089 | 882 | False | 432.500000 | 704 | 90.238500 | 206 | 1622 | 2 | chr3B.!!$F1 | 1416 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
698 | 1293 | 0.096976 | GTGTGTGTGTCTGTGTGTGC | 59.903 | 55.0 | 0.0 | 0.0 | 0.0 | 4.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1551 | 2217 | 0.172127 | TTGCAAAACAAGCAGCGACA | 59.828 | 45.0 | 0.0 | 0.0 | 43.75 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 2.612200 | CACCAGTGTACACGTTGGG | 58.388 | 57.895 | 28.39 | 24.28 | 32.66 | 4.12 |
19 | 20 | 0.179067 | CACCAGTGTACACGTTGGGT | 60.179 | 55.000 | 28.39 | 24.78 | 32.66 | 4.51 |
27 | 28 | 2.555782 | CACGTTGGGTGTCATGCG | 59.444 | 61.111 | 0.00 | 0.00 | 41.89 | 4.73 |
28 | 29 | 3.353836 | ACGTTGGGTGTCATGCGC | 61.354 | 61.111 | 0.00 | 0.00 | 0.00 | 6.09 |
29 | 30 | 3.049674 | CGTTGGGTGTCATGCGCT | 61.050 | 61.111 | 9.73 | 0.00 | 0.00 | 5.92 |
30 | 31 | 1.739929 | CGTTGGGTGTCATGCGCTA | 60.740 | 57.895 | 9.73 | 0.00 | 0.00 | 4.26 |
31 | 32 | 1.089481 | CGTTGGGTGTCATGCGCTAT | 61.089 | 55.000 | 9.73 | 0.00 | 0.00 | 2.97 |
32 | 33 | 1.804746 | CGTTGGGTGTCATGCGCTATA | 60.805 | 52.381 | 9.73 | 0.00 | 0.00 | 1.31 |
33 | 34 | 1.597663 | GTTGGGTGTCATGCGCTATAC | 59.402 | 52.381 | 9.73 | 4.17 | 0.00 | 1.47 |
34 | 35 | 0.827368 | TGGGTGTCATGCGCTATACA | 59.173 | 50.000 | 9.73 | 7.09 | 0.00 | 2.29 |
35 | 36 | 1.416030 | TGGGTGTCATGCGCTATACAT | 59.584 | 47.619 | 9.73 | 0.00 | 0.00 | 2.29 |
36 | 37 | 2.158827 | TGGGTGTCATGCGCTATACATT | 60.159 | 45.455 | 9.73 | 0.00 | 0.00 | 2.71 |
37 | 38 | 2.224079 | GGGTGTCATGCGCTATACATTG | 59.776 | 50.000 | 9.73 | 0.00 | 0.00 | 2.82 |
38 | 39 | 2.349817 | GGTGTCATGCGCTATACATTGC | 60.350 | 50.000 | 9.73 | 0.00 | 0.00 | 3.56 |
39 | 40 | 1.872952 | TGTCATGCGCTATACATTGCC | 59.127 | 47.619 | 9.73 | 0.00 | 0.00 | 4.52 |
40 | 41 | 1.136252 | GTCATGCGCTATACATTGCCG | 60.136 | 52.381 | 9.73 | 0.00 | 0.00 | 5.69 |
41 | 42 | 0.166597 | CATGCGCTATACATTGCCGG | 59.833 | 55.000 | 9.73 | 0.00 | 0.00 | 6.13 |
42 | 43 | 0.250295 | ATGCGCTATACATTGCCGGT | 60.250 | 50.000 | 9.73 | 0.00 | 0.00 | 5.28 |
43 | 44 | 0.389757 | TGCGCTATACATTGCCGGTA | 59.610 | 50.000 | 9.73 | 0.00 | 0.00 | 4.02 |
44 | 45 | 1.068474 | GCGCTATACATTGCCGGTAG | 58.932 | 55.000 | 1.90 | 0.00 | 0.00 | 3.18 |
45 | 46 | 1.604693 | GCGCTATACATTGCCGGTAGT | 60.605 | 52.381 | 1.90 | 0.00 | 0.00 | 2.73 |
46 | 47 | 2.325761 | CGCTATACATTGCCGGTAGTC | 58.674 | 52.381 | 1.90 | 0.00 | 0.00 | 2.59 |
47 | 48 | 2.325761 | GCTATACATTGCCGGTAGTCG | 58.674 | 52.381 | 1.90 | 0.00 | 38.88 | 4.18 |
56 | 57 | 3.429925 | CGGTAGTCGGTAGAGGCC | 58.570 | 66.667 | 0.00 | 0.00 | 34.75 | 5.19 |
57 | 58 | 1.452651 | CGGTAGTCGGTAGAGGCCA | 60.453 | 63.158 | 5.01 | 0.00 | 34.75 | 5.36 |
58 | 59 | 0.822532 | CGGTAGTCGGTAGAGGCCAT | 60.823 | 60.000 | 5.01 | 0.00 | 34.75 | 4.40 |
59 | 60 | 1.544093 | CGGTAGTCGGTAGAGGCCATA | 60.544 | 57.143 | 5.01 | 0.00 | 34.75 | 2.74 |
60 | 61 | 2.805194 | GGTAGTCGGTAGAGGCCATAT | 58.195 | 52.381 | 5.01 | 0.00 | 0.00 | 1.78 |
61 | 62 | 2.492484 | GGTAGTCGGTAGAGGCCATATG | 59.508 | 54.545 | 5.01 | 0.00 | 0.00 | 1.78 |
62 | 63 | 0.969894 | AGTCGGTAGAGGCCATATGC | 59.030 | 55.000 | 5.01 | 0.00 | 40.16 | 3.14 |
75 | 76 | 4.574599 | GCCATATGCCAAGTTTTCCTAG | 57.425 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
76 | 77 | 3.319122 | GCCATATGCCAAGTTTTCCTAGG | 59.681 | 47.826 | 0.82 | 0.82 | 0.00 | 3.02 |
77 | 78 | 3.891366 | CCATATGCCAAGTTTTCCTAGGG | 59.109 | 47.826 | 9.46 | 0.00 | 0.00 | 3.53 |
78 | 79 | 4.386312 | CCATATGCCAAGTTTTCCTAGGGA | 60.386 | 45.833 | 9.46 | 0.00 | 0.00 | 4.20 |
94 | 95 | 0.393808 | GGGAATAGGTCGCCTTGCAA | 60.394 | 55.000 | 0.00 | 0.00 | 34.61 | 4.08 |
110 | 111 | 5.934043 | GCCTTGCAAGATTCAAAAGGTATTT | 59.066 | 36.000 | 28.05 | 0.00 | 39.70 | 1.40 |
114 | 115 | 4.201618 | GCAAGATTCAAAAGGTATTTGCGC | 60.202 | 41.667 | 0.00 | 0.00 | 31.71 | 6.09 |
133 | 134 | 6.007936 | TGCGCGCCAAGATAAATAATAATT | 57.992 | 33.333 | 30.77 | 0.00 | 0.00 | 1.40 |
137 | 138 | 6.155827 | GCGCCAAGATAAATAATAATTGCCA | 58.844 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
139 | 140 | 7.331687 | GCGCCAAGATAAATAATAATTGCCATT | 59.668 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
186 | 187 | 9.968743 | GGTGAATGTTATTAAAGTAGAAACTCG | 57.031 | 33.333 | 0.00 | 0.00 | 33.75 | 4.18 |
202 | 203 | 6.546056 | GAAACTCGATTTCTGCTAAAATGC | 57.454 | 37.500 | 10.96 | 0.00 | 43.06 | 3.56 |
213 | 793 | 9.831737 | ATTTCTGCTAAAATGCGATACATATTC | 57.168 | 29.630 | 0.00 | 0.00 | 38.34 | 1.75 |
240 | 820 | 7.630242 | TTCCACCTCAATGAATGTAAAGATC | 57.370 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
243 | 832 | 7.554118 | TCCACCTCAATGAATGTAAAGATCTTC | 59.446 | 37.037 | 8.78 | 0.00 | 0.00 | 2.87 |
266 | 858 | 9.807649 | CTTCTTGGAGGGAATTAAATGTTTATG | 57.192 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
683 | 1278 | 2.695613 | TTTGTGTGTGTGTGTGTGTG | 57.304 | 45.000 | 0.00 | 0.00 | 0.00 | 3.82 |
684 | 1279 | 1.598882 | TTGTGTGTGTGTGTGTGTGT | 58.401 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
685 | 1280 | 0.871057 | TGTGTGTGTGTGTGTGTGTG | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
686 | 1281 | 0.871722 | GTGTGTGTGTGTGTGTGTGT | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
687 | 1282 | 0.871057 | TGTGTGTGTGTGTGTGTGTG | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
688 | 1283 | 0.871722 | GTGTGTGTGTGTGTGTGTGT | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
689 | 1284 | 1.136085 | GTGTGTGTGTGTGTGTGTGTC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
690 | 1285 | 1.270571 | TGTGTGTGTGTGTGTGTGTCT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
691 | 1286 | 1.128507 | GTGTGTGTGTGTGTGTGTCTG | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
692 | 1287 | 1.270571 | TGTGTGTGTGTGTGTGTCTGT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
693 | 1288 | 1.128507 | GTGTGTGTGTGTGTGTCTGTG | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
694 | 1289 | 1.270571 | TGTGTGTGTGTGTGTCTGTGT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
695 | 1290 | 1.128507 | GTGTGTGTGTGTGTCTGTGTG | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
696 | 1291 | 1.270571 | TGTGTGTGTGTGTCTGTGTGT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
697 | 1292 | 1.128507 | GTGTGTGTGTGTCTGTGTGTG | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
698 | 1293 | 0.096976 | GTGTGTGTGTCTGTGTGTGC | 59.903 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
699 | 1294 | 1.348250 | GTGTGTGTCTGTGTGTGCG | 59.652 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
700 | 1295 | 2.324477 | GTGTGTCTGTGTGTGCGC | 59.676 | 61.111 | 0.00 | 0.00 | 0.00 | 6.09 |
701 | 1296 | 2.125350 | TGTGTCTGTGTGTGCGCA | 60.125 | 55.556 | 5.66 | 5.66 | 0.00 | 6.09 |
702 | 1297 | 1.523484 | TGTGTCTGTGTGTGCGCAT | 60.523 | 52.632 | 15.91 | 0.00 | 34.29 | 4.73 |
703 | 1298 | 1.082561 | GTGTCTGTGTGTGCGCATG | 60.083 | 57.895 | 15.91 | 0.00 | 34.29 | 4.06 |
704 | 1299 | 1.523484 | TGTCTGTGTGTGCGCATGT | 60.523 | 52.632 | 15.91 | 0.00 | 34.29 | 3.21 |
705 | 1300 | 1.082561 | GTCTGTGTGTGCGCATGTG | 60.083 | 57.895 | 15.91 | 0.66 | 34.29 | 3.21 |
706 | 1301 | 1.523484 | TCTGTGTGTGCGCATGTGT | 60.523 | 52.632 | 15.91 | 0.00 | 34.29 | 3.72 |
707 | 1302 | 1.369568 | CTGTGTGTGCGCATGTGTG | 60.370 | 57.895 | 15.91 | 0.00 | 34.29 | 3.82 |
708 | 1303 | 2.050639 | CTGTGTGTGCGCATGTGTGT | 62.051 | 55.000 | 15.91 | 0.00 | 34.29 | 3.72 |
709 | 1304 | 0.811616 | TGTGTGTGCGCATGTGTGTA | 60.812 | 50.000 | 15.91 | 0.00 | 0.00 | 2.90 |
710 | 1305 | 0.516877 | GTGTGTGCGCATGTGTGTAT | 59.483 | 50.000 | 15.91 | 0.00 | 0.00 | 2.29 |
711 | 1306 | 1.729517 | GTGTGTGCGCATGTGTGTATA | 59.270 | 47.619 | 15.91 | 0.00 | 0.00 | 1.47 |
712 | 1307 | 1.999024 | TGTGTGCGCATGTGTGTATAG | 59.001 | 47.619 | 15.91 | 0.00 | 0.00 | 1.31 |
713 | 1308 | 1.999735 | GTGTGCGCATGTGTGTATAGT | 59.000 | 47.619 | 15.91 | 0.00 | 0.00 | 2.12 |
714 | 1309 | 2.415168 | GTGTGCGCATGTGTGTATAGTT | 59.585 | 45.455 | 15.91 | 0.00 | 0.00 | 2.24 |
715 | 1310 | 3.615056 | GTGTGCGCATGTGTGTATAGTTA | 59.385 | 43.478 | 15.91 | 0.00 | 0.00 | 2.24 |
716 | 1311 | 3.615056 | TGTGCGCATGTGTGTATAGTTAC | 59.385 | 43.478 | 15.91 | 0.00 | 0.00 | 2.50 |
717 | 1312 | 3.863424 | GTGCGCATGTGTGTATAGTTACT | 59.137 | 43.478 | 15.91 | 0.00 | 0.00 | 2.24 |
718 | 1313 | 3.862845 | TGCGCATGTGTGTATAGTTACTG | 59.137 | 43.478 | 5.66 | 0.00 | 0.00 | 2.74 |
719 | 1314 | 3.245284 | GCGCATGTGTGTATAGTTACTGG | 59.755 | 47.826 | 0.30 | 0.00 | 0.00 | 4.00 |
720 | 1315 | 3.802139 | CGCATGTGTGTATAGTTACTGGG | 59.198 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
721 | 1316 | 4.127171 | GCATGTGTGTATAGTTACTGGGG | 58.873 | 47.826 | 0.00 | 0.00 | 0.00 | 4.96 |
722 | 1317 | 4.383770 | GCATGTGTGTATAGTTACTGGGGT | 60.384 | 45.833 | 0.00 | 0.00 | 0.00 | 4.95 |
723 | 1318 | 4.811969 | TGTGTGTATAGTTACTGGGGTG | 57.188 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
724 | 1319 | 4.161876 | TGTGTGTATAGTTACTGGGGTGT | 58.838 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
725 | 1320 | 4.020928 | TGTGTGTATAGTTACTGGGGTGTG | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
726 | 1321 | 4.020839 | GTGTGTATAGTTACTGGGGTGTGT | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.72 |
727 | 1322 | 4.020928 | TGTGTATAGTTACTGGGGTGTGTG | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
728 | 1323 | 4.020839 | GTGTATAGTTACTGGGGTGTGTGT | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.72 |
729 | 1324 | 5.185635 | GTGTATAGTTACTGGGGTGTGTGTA | 59.814 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
730 | 1325 | 4.813750 | ATAGTTACTGGGGTGTGTGTAC | 57.186 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
731 | 1326 | 2.400573 | AGTTACTGGGGTGTGTGTACA | 58.599 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
732 | 1327 | 2.976882 | AGTTACTGGGGTGTGTGTACAT | 59.023 | 45.455 | 0.00 | 0.00 | 39.39 | 2.29 |
733 | 1328 | 4.161876 | AGTTACTGGGGTGTGTGTACATA | 58.838 | 43.478 | 0.00 | 0.00 | 39.39 | 2.29 |
734 | 1329 | 4.781087 | AGTTACTGGGGTGTGTGTACATAT | 59.219 | 41.667 | 0.00 | 0.00 | 39.39 | 1.78 |
735 | 1330 | 5.959594 | AGTTACTGGGGTGTGTGTACATATA | 59.040 | 40.000 | 0.00 | 0.00 | 39.39 | 0.86 |
736 | 1331 | 6.614087 | AGTTACTGGGGTGTGTGTACATATAT | 59.386 | 38.462 | 0.00 | 0.00 | 39.39 | 0.86 |
737 | 1332 | 5.290493 | ACTGGGGTGTGTGTACATATATG | 57.710 | 43.478 | 11.29 | 11.29 | 39.39 | 1.78 |
738 | 1333 | 4.719773 | ACTGGGGTGTGTGTACATATATGT | 59.280 | 41.667 | 21.57 | 21.57 | 44.48 | 2.29 |
739 | 1334 | 5.029807 | TGGGGTGTGTGTACATATATGTG | 57.970 | 43.478 | 25.48 | 0.00 | 41.89 | 3.21 |
740 | 1335 | 4.471747 | TGGGGTGTGTGTACATATATGTGT | 59.528 | 41.667 | 25.48 | 10.18 | 41.89 | 3.72 |
741 | 1336 | 4.814234 | GGGGTGTGTGTACATATATGTGTG | 59.186 | 45.833 | 25.48 | 0.00 | 41.89 | 3.82 |
742 | 1337 | 5.424757 | GGGTGTGTGTACATATATGTGTGT | 58.575 | 41.667 | 25.48 | 5.34 | 41.89 | 3.72 |
743 | 1338 | 6.407187 | GGGGTGTGTGTACATATATGTGTGTA | 60.407 | 42.308 | 25.48 | 5.35 | 41.89 | 2.90 |
744 | 1339 | 7.042950 | GGGTGTGTGTACATATATGTGTGTAA | 58.957 | 38.462 | 25.48 | 4.99 | 41.89 | 2.41 |
745 | 1340 | 7.549842 | GGGTGTGTGTACATATATGTGTGTAAA | 59.450 | 37.037 | 25.48 | 4.27 | 41.89 | 2.01 |
746 | 1341 | 9.104965 | GGTGTGTGTACATATATGTGTGTAAAT | 57.895 | 33.333 | 25.48 | 1.44 | 41.89 | 1.40 |
773 | 1368 | 9.794719 | ATATGCTATACTAAGTGTGAGTGTAGA | 57.205 | 33.333 | 9.84 | 0.00 | 39.64 | 2.59 |
774 | 1369 | 7.933215 | TGCTATACTAAGTGTGAGTGTAGAA | 57.067 | 36.000 | 9.84 | 0.00 | 39.64 | 2.10 |
775 | 1370 | 8.521170 | TGCTATACTAAGTGTGAGTGTAGAAT | 57.479 | 34.615 | 9.84 | 0.00 | 39.64 | 2.40 |
776 | 1371 | 9.623000 | TGCTATACTAAGTGTGAGTGTAGAATA | 57.377 | 33.333 | 9.84 | 0.00 | 39.64 | 1.75 |
779 | 1374 | 8.754991 | ATACTAAGTGTGAGTGTAGAATAGCT | 57.245 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
780 | 1375 | 7.469537 | ACTAAGTGTGAGTGTAGAATAGCTT | 57.530 | 36.000 | 0.00 | 0.00 | 0.00 | 3.74 |
781 | 1376 | 8.577048 | ACTAAGTGTGAGTGTAGAATAGCTTA | 57.423 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
782 | 1377 | 9.191479 | ACTAAGTGTGAGTGTAGAATAGCTTAT | 57.809 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
784 | 1379 | 8.934507 | AAGTGTGAGTGTAGAATAGCTTATTC | 57.065 | 34.615 | 0.00 | 0.00 | 43.77 | 1.75 |
795 | 1390 | 6.086785 | GAATAGCTTATTCTACACCCGAGT | 57.913 | 41.667 | 0.00 | 0.00 | 41.00 | 4.18 |
796 | 1391 | 7.211966 | GAATAGCTTATTCTACACCCGAGTA | 57.788 | 40.000 | 0.00 | 0.00 | 41.00 | 2.59 |
797 | 1392 | 7.592885 | AATAGCTTATTCTACACCCGAGTAA | 57.407 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
798 | 1393 | 5.259832 | AGCTTATTCTACACCCGAGTAAC | 57.740 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
799 | 1394 | 4.040376 | GCTTATTCTACACCCGAGTAACG | 58.960 | 47.826 | 0.00 | 0.00 | 42.18 | 3.18 |
800 | 1395 | 4.201950 | GCTTATTCTACACCCGAGTAACGA | 60.202 | 45.833 | 0.00 | 0.00 | 45.77 | 3.85 |
801 | 1396 | 5.506982 | GCTTATTCTACACCCGAGTAACGAT | 60.507 | 44.000 | 0.00 | 0.00 | 45.77 | 3.73 |
802 | 1397 | 6.293626 | GCTTATTCTACACCCGAGTAACGATA | 60.294 | 42.308 | 0.00 | 0.00 | 45.77 | 2.92 |
803 | 1398 | 4.882671 | TTCTACACCCGAGTAACGATAC | 57.117 | 45.455 | 0.00 | 0.00 | 45.77 | 2.24 |
804 | 1399 | 3.872696 | TCTACACCCGAGTAACGATACA | 58.127 | 45.455 | 5.59 | 0.00 | 45.77 | 2.29 |
805 | 1400 | 4.454678 | TCTACACCCGAGTAACGATACAT | 58.545 | 43.478 | 5.59 | 0.00 | 45.77 | 2.29 |
806 | 1401 | 5.610398 | TCTACACCCGAGTAACGATACATA | 58.390 | 41.667 | 5.59 | 0.00 | 45.77 | 2.29 |
807 | 1402 | 4.558538 | ACACCCGAGTAACGATACATAC | 57.441 | 45.455 | 5.59 | 0.00 | 45.77 | 2.39 |
808 | 1403 | 3.947196 | ACACCCGAGTAACGATACATACA | 59.053 | 43.478 | 5.59 | 0.00 | 45.77 | 2.29 |
809 | 1404 | 4.398988 | ACACCCGAGTAACGATACATACAA | 59.601 | 41.667 | 5.59 | 0.00 | 45.77 | 2.41 |
810 | 1405 | 5.105797 | ACACCCGAGTAACGATACATACAAA | 60.106 | 40.000 | 5.59 | 0.00 | 45.77 | 2.83 |
811 | 1406 | 5.806502 | CACCCGAGTAACGATACATACAAAA | 59.193 | 40.000 | 5.59 | 0.00 | 45.77 | 2.44 |
812 | 1407 | 6.477688 | CACCCGAGTAACGATACATACAAAAT | 59.522 | 38.462 | 5.59 | 0.00 | 45.77 | 1.82 |
813 | 1408 | 6.477688 | ACCCGAGTAACGATACATACAAAATG | 59.522 | 38.462 | 5.59 | 0.00 | 45.77 | 2.32 |
814 | 1409 | 6.477688 | CCCGAGTAACGATACATACAAAATGT | 59.522 | 38.462 | 5.59 | 0.00 | 45.77 | 2.71 |
815 | 1410 | 7.648908 | CCCGAGTAACGATACATACAAAATGTA | 59.351 | 37.037 | 5.59 | 0.69 | 45.77 | 2.29 |
816 | 1411 | 8.688184 | CCGAGTAACGATACATACAAAATGTAG | 58.312 | 37.037 | 5.59 | 0.00 | 45.77 | 2.74 |
817 | 1412 | 9.229784 | CGAGTAACGATACATACAAAATGTAGT | 57.770 | 33.333 | 5.59 | 0.00 | 45.77 | 2.73 |
822 | 1417 | 7.834529 | ACGATACATACAAAATGTAGTAACGC | 58.165 | 34.615 | 18.06 | 0.00 | 36.90 | 4.84 |
823 | 1418 | 7.488792 | ACGATACATACAAAATGTAGTAACGCA | 59.511 | 33.333 | 18.06 | 0.00 | 36.90 | 5.24 |
824 | 1419 | 8.322428 | CGATACATACAAAATGTAGTAACGCAA | 58.678 | 33.333 | 4.38 | 0.00 | 36.14 | 4.85 |
979 | 1641 | 2.946329 | TCGGCAAAGCTTTAGTTGTCAA | 59.054 | 40.909 | 12.25 | 0.00 | 29.64 | 3.18 |
1103 | 1768 | 4.473520 | CCCCGCAGACAAGCCGAT | 62.474 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1173 | 1838 | 1.476891 | GAGGGAGTGCATGACTACGAA | 59.523 | 52.381 | 0.00 | 0.00 | 36.16 | 3.85 |
1206 | 1871 | 3.244582 | TGGCTCCTTTGAGGTACACTTA | 58.755 | 45.455 | 0.00 | 0.00 | 39.14 | 2.24 |
1224 | 1889 | 7.566760 | ACACTTATCCGATGAATGCAAATTA | 57.433 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1234 | 1899 | 6.561350 | CGATGAATGCAAATTACGTATCGACA | 60.561 | 38.462 | 0.00 | 0.00 | 37.63 | 4.35 |
1267 | 1932 | 0.677288 | CCACTACAACACTCGGGTCA | 59.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1303 | 1968 | 3.356639 | GACACGATCAGCGGCCTCA | 62.357 | 63.158 | 0.00 | 0.00 | 46.49 | 3.86 |
1418 | 2083 | 2.830704 | AAGTCATTCCCGGTCGACGC | 62.831 | 60.000 | 9.92 | 1.55 | 42.52 | 5.19 |
1502 | 2167 | 2.621055 | CCGAGTCTTCCTCTTCGATCAT | 59.379 | 50.000 | 0.00 | 0.00 | 38.11 | 2.45 |
1505 | 2170 | 4.439426 | CGAGTCTTCCTCTTCGATCATGTT | 60.439 | 45.833 | 0.00 | 0.00 | 38.11 | 2.71 |
1510 | 2175 | 4.736126 | TCCTCTTCGATCATGTTGCTTA | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 3.09 |
1545 | 2211 | 6.988580 | TCTTTCTTCGTAGATTGATGATGCAT | 59.011 | 34.615 | 0.00 | 0.00 | 35.04 | 3.96 |
1546 | 2212 | 6.535274 | TTCTTCGTAGATTGATGATGCATG | 57.465 | 37.500 | 2.46 | 0.00 | 35.04 | 4.06 |
1547 | 2213 | 4.450080 | TCTTCGTAGATTGATGATGCATGC | 59.550 | 41.667 | 11.82 | 11.82 | 35.04 | 4.06 |
1548 | 2214 | 2.733026 | TCGTAGATTGATGATGCATGCG | 59.267 | 45.455 | 14.09 | 0.00 | 0.00 | 4.73 |
1549 | 2215 | 2.159747 | CGTAGATTGATGATGCATGCGG | 60.160 | 50.000 | 14.09 | 0.00 | 0.00 | 5.69 |
1550 | 2216 | 0.596577 | AGATTGATGATGCATGCGGC | 59.403 | 50.000 | 14.09 | 7.96 | 45.13 | 6.53 |
1551 | 2217 | 0.596577 | GATTGATGATGCATGCGGCT | 59.403 | 50.000 | 14.09 | 0.00 | 45.15 | 5.52 |
1554 | 2220 | 1.281960 | GATGATGCATGCGGCTGTC | 59.718 | 57.895 | 14.09 | 6.56 | 45.15 | 3.51 |
1575 | 2241 | 0.177604 | CTGCTTGTTTTGCAACCCCA | 59.822 | 50.000 | 0.00 | 0.00 | 40.13 | 4.96 |
1585 | 2251 | 1.259142 | TGCAACCCCATGCCATCTTG | 61.259 | 55.000 | 0.00 | 0.00 | 45.83 | 3.02 |
1646 | 2320 | 7.122715 | ACCAAGTGATATTAAATGGTGCCTTA | 58.877 | 34.615 | 5.06 | 0.00 | 39.57 | 2.69 |
1721 | 2396 | 3.555547 | CGGTGAATGCGTTATCTGATCAA | 59.444 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1728 | 2403 | 4.832248 | TGCGTTATCTGATCAAAGAAGGT | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
1750 | 2425 | 6.770785 | AGGTATAATCGTATTGTGGCACAAAT | 59.229 | 34.615 | 34.01 | 22.90 | 44.16 | 2.32 |
1776 | 2451 | 6.035112 | GGAAACTGTCACTTAATTAGCTCTCG | 59.965 | 42.308 | 0.00 | 0.00 | 0.00 | 4.04 |
1830 | 2506 | 5.520632 | TCGATCTTGAAGATAGCTTTACCG | 58.479 | 41.667 | 7.82 | 5.11 | 34.53 | 4.02 |
1881 | 2560 | 9.159470 | GCGATAAAACTTTTGATCTATTAGTGC | 57.841 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
1901 | 2580 | 0.038599 | TGCCATGTCAGCATTGGAGT | 59.961 | 50.000 | 0.00 | 0.00 | 34.69 | 3.85 |
1933 | 2612 | 2.882876 | CCGTCGTCATCGTCCCTT | 59.117 | 61.111 | 0.00 | 0.00 | 38.33 | 3.95 |
1939 | 2618 | 0.747255 | CGTCATCGTCCCTTCCTCAT | 59.253 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1961 | 2640 | 1.963515 | GGAGTCAGGCCAAACATGTTT | 59.036 | 47.619 | 18.13 | 18.13 | 0.00 | 2.83 |
1987 | 2666 | 3.162666 | AGACAGTCGGAAAGTCATGGTA | 58.837 | 45.455 | 11.98 | 0.00 | 34.80 | 3.25 |
1988 | 2667 | 3.769844 | AGACAGTCGGAAAGTCATGGTAT | 59.230 | 43.478 | 11.98 | 0.00 | 34.80 | 2.73 |
2000 | 2680 | 1.142060 | TCATGGTATTAAGGCCCCACG | 59.858 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
2031 | 2711 | 2.066262 | ACCAGAACAGTAAACATCGCG | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 5.87 |
2038 | 2718 | 5.636121 | AGAACAGTAAACATCGCGTATGAAA | 59.364 | 36.000 | 20.36 | 0.00 | 39.07 | 2.69 |
2137 | 2817 | 3.252215 | CCAAACACTAGCACCGATTGAAA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2153 | 2833 | 3.986996 | TGAAACTCATGAGATCTGCCA | 57.013 | 42.857 | 29.27 | 13.65 | 0.00 | 4.92 |
2156 | 2836 | 4.019950 | TGAAACTCATGAGATCTGCCAGAA | 60.020 | 41.667 | 29.27 | 6.45 | 0.00 | 3.02 |
2174 | 2854 | 0.685785 | AAACACACCACCACATGCCA | 60.686 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2177 | 2857 | 0.680618 | CACACCACCACATGCCATTT | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2183 | 2863 | 2.432874 | CCACCACATGCCATTTGATGAT | 59.567 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
2221 | 2901 | 1.508256 | AATGGGCACTAGGTAGGGAC | 58.492 | 55.000 | 0.00 | 0.00 | 32.54 | 4.46 |
2224 | 2904 | 1.282382 | GGGCACTAGGTAGGGACAAA | 58.718 | 55.000 | 0.00 | 0.00 | 36.07 | 2.83 |
2283 | 2966 | 4.380531 | TCTGAGCAAGACACAAACCTAAG | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.179067 | ACCCAACGTGTACACTGGTG | 60.179 | 55.000 | 24.86 | 23.11 | 0.00 | 4.17 |
1 | 2 | 0.179067 | CACCCAACGTGTACACTGGT | 60.179 | 55.000 | 24.86 | 20.50 | 37.73 | 4.00 |
2 | 3 | 2.612200 | CACCCAACGTGTACACTGG | 58.388 | 57.895 | 23.01 | 22.32 | 37.73 | 4.00 |
11 | 12 | 2.443260 | TAGCGCATGACACCCAACGT | 62.443 | 55.000 | 11.47 | 0.00 | 32.88 | 3.99 |
12 | 13 | 1.089481 | ATAGCGCATGACACCCAACG | 61.089 | 55.000 | 11.47 | 0.00 | 0.00 | 4.10 |
13 | 14 | 1.597663 | GTATAGCGCATGACACCCAAC | 59.402 | 52.381 | 11.47 | 0.00 | 0.00 | 3.77 |
14 | 15 | 1.208293 | TGTATAGCGCATGACACCCAA | 59.792 | 47.619 | 11.47 | 0.00 | 0.00 | 4.12 |
15 | 16 | 0.827368 | TGTATAGCGCATGACACCCA | 59.173 | 50.000 | 11.47 | 0.00 | 0.00 | 4.51 |
16 | 17 | 2.169832 | ATGTATAGCGCATGACACCC | 57.830 | 50.000 | 11.47 | 0.00 | 0.00 | 4.61 |
17 | 18 | 2.349817 | GCAATGTATAGCGCATGACACC | 60.350 | 50.000 | 11.47 | 0.00 | 0.00 | 4.16 |
18 | 19 | 2.349817 | GGCAATGTATAGCGCATGACAC | 60.350 | 50.000 | 11.47 | 0.00 | 0.00 | 3.67 |
19 | 20 | 1.872952 | GGCAATGTATAGCGCATGACA | 59.127 | 47.619 | 11.47 | 10.67 | 0.00 | 3.58 |
20 | 21 | 1.136252 | CGGCAATGTATAGCGCATGAC | 60.136 | 52.381 | 11.47 | 4.17 | 0.00 | 3.06 |
21 | 22 | 1.147473 | CGGCAATGTATAGCGCATGA | 58.853 | 50.000 | 11.47 | 0.00 | 0.00 | 3.07 |
22 | 23 | 0.166597 | CCGGCAATGTATAGCGCATG | 59.833 | 55.000 | 11.47 | 0.00 | 0.00 | 4.06 |
23 | 24 | 0.250295 | ACCGGCAATGTATAGCGCAT | 60.250 | 50.000 | 11.47 | 3.63 | 0.00 | 4.73 |
24 | 25 | 0.389757 | TACCGGCAATGTATAGCGCA | 59.610 | 50.000 | 11.47 | 0.00 | 0.00 | 6.09 |
25 | 26 | 1.068474 | CTACCGGCAATGTATAGCGC | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
26 | 27 | 2.325761 | GACTACCGGCAATGTATAGCG | 58.674 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
27 | 28 | 2.325761 | CGACTACCGGCAATGTATAGC | 58.674 | 52.381 | 0.00 | 0.00 | 33.91 | 2.97 |
39 | 40 | 0.822532 | ATGGCCTCTACCGACTACCG | 60.823 | 60.000 | 3.32 | 0.00 | 38.18 | 4.02 |
40 | 41 | 2.283145 | TATGGCCTCTACCGACTACC | 57.717 | 55.000 | 3.32 | 0.00 | 0.00 | 3.18 |
41 | 42 | 2.094649 | GCATATGGCCTCTACCGACTAC | 60.095 | 54.545 | 3.32 | 0.00 | 36.11 | 2.73 |
42 | 43 | 2.168496 | GCATATGGCCTCTACCGACTA | 58.832 | 52.381 | 3.32 | 0.00 | 36.11 | 2.59 |
43 | 44 | 0.969894 | GCATATGGCCTCTACCGACT | 59.030 | 55.000 | 3.32 | 0.00 | 36.11 | 4.18 |
44 | 45 | 3.516578 | GCATATGGCCTCTACCGAC | 57.483 | 57.895 | 3.32 | 0.00 | 36.11 | 4.79 |
54 | 55 | 3.319122 | CCTAGGAAAACTTGGCATATGGC | 59.681 | 47.826 | 21.76 | 21.76 | 43.74 | 4.40 |
55 | 56 | 3.891366 | CCCTAGGAAAACTTGGCATATGG | 59.109 | 47.826 | 11.48 | 0.00 | 40.30 | 2.74 |
56 | 57 | 4.792068 | TCCCTAGGAAAACTTGGCATATG | 58.208 | 43.478 | 11.48 | 0.00 | 40.30 | 1.78 |
57 | 58 | 5.466127 | TTCCCTAGGAAAACTTGGCATAT | 57.534 | 39.130 | 11.48 | 0.00 | 38.93 | 1.78 |
58 | 59 | 4.938575 | TTCCCTAGGAAAACTTGGCATA | 57.061 | 40.909 | 11.48 | 0.00 | 38.93 | 3.14 |
59 | 60 | 3.825908 | TTCCCTAGGAAAACTTGGCAT | 57.174 | 42.857 | 11.48 | 0.00 | 38.93 | 4.40 |
60 | 61 | 3.825908 | ATTCCCTAGGAAAACTTGGCA | 57.174 | 42.857 | 11.48 | 0.00 | 45.41 | 4.92 |
72 | 73 | 1.270358 | GCAAGGCGACCTATTCCCTAG | 60.270 | 57.143 | 0.00 | 0.00 | 31.13 | 3.02 |
73 | 74 | 0.756903 | GCAAGGCGACCTATTCCCTA | 59.243 | 55.000 | 0.00 | 0.00 | 31.13 | 3.53 |
74 | 75 | 1.271840 | TGCAAGGCGACCTATTCCCT | 61.272 | 55.000 | 0.00 | 0.00 | 31.13 | 4.20 |
75 | 76 | 0.393808 | TTGCAAGGCGACCTATTCCC | 60.394 | 55.000 | 0.00 | 0.00 | 31.13 | 3.97 |
76 | 77 | 1.017387 | CTTGCAAGGCGACCTATTCC | 58.983 | 55.000 | 19.14 | 0.00 | 31.13 | 3.01 |
77 | 78 | 2.024176 | TCTTGCAAGGCGACCTATTC | 57.976 | 50.000 | 25.73 | 0.00 | 31.13 | 1.75 |
78 | 79 | 2.717639 | ATCTTGCAAGGCGACCTATT | 57.282 | 45.000 | 25.73 | 0.00 | 31.13 | 1.73 |
94 | 95 | 3.758300 | CGCGCAAATACCTTTTGAATCT | 58.242 | 40.909 | 8.75 | 0.00 | 0.00 | 2.40 |
110 | 111 | 5.621197 | ATTATTATTTATCTTGGCGCGCA | 57.379 | 34.783 | 34.42 | 16.55 | 0.00 | 6.09 |
114 | 115 | 8.761575 | AATGGCAATTATTATTTATCTTGGCG | 57.238 | 30.769 | 0.00 | 0.00 | 37.37 | 5.69 |
137 | 138 | 5.420104 | CCAAGTTCTTCTCAAAGGCCATAAT | 59.580 | 40.000 | 5.01 | 0.00 | 33.03 | 1.28 |
139 | 140 | 4.202567 | ACCAAGTTCTTCTCAAAGGCCATA | 60.203 | 41.667 | 5.01 | 0.00 | 33.03 | 2.74 |
183 | 184 | 4.520743 | TCGCATTTTAGCAGAAATCGAG | 57.479 | 40.909 | 0.00 | 4.78 | 31.50 | 4.04 |
185 | 186 | 5.737353 | TGTATCGCATTTTAGCAGAAATCG | 58.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
186 | 187 | 9.831737 | AATATGTATCGCATTTTAGCAGAAATC | 57.168 | 29.630 | 0.00 | 0.00 | 38.94 | 2.17 |
201 | 202 | 5.700832 | TGAGGTGGAATTGAATATGTATCGC | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
202 | 203 | 7.728847 | TTGAGGTGGAATTGAATATGTATCG | 57.271 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
213 | 793 | 7.829725 | TCTTTACATTCATTGAGGTGGAATTG | 58.170 | 34.615 | 3.98 | 0.93 | 0.00 | 2.32 |
240 | 820 | 9.807649 | CATAAACATTTAATTCCCTCCAAGAAG | 57.192 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
243 | 832 | 9.369904 | CAACATAAACATTTAATTCCCTCCAAG | 57.630 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
661 | 1256 | 4.397730 | ACACACACACACACACACAAATAT | 59.602 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
662 | 1257 | 3.753797 | ACACACACACACACACACAAATA | 59.246 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
663 | 1258 | 2.556189 | ACACACACACACACACACAAAT | 59.444 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
664 | 1259 | 1.950216 | ACACACACACACACACACAAA | 59.050 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
665 | 1260 | 1.265365 | CACACACACACACACACACAA | 59.735 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
666 | 1261 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
667 | 1262 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
668 | 1263 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
669 | 1264 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
670 | 1265 | 1.152510 | GACACACACACACACACACA | 58.847 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
671 | 1266 | 1.128507 | CAGACACACACACACACACAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
672 | 1267 | 1.270571 | ACAGACACACACACACACACA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
673 | 1268 | 1.128507 | CACAGACACACACACACACAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
674 | 1269 | 1.270571 | ACACAGACACACACACACACA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
675 | 1270 | 1.128507 | CACACAGACACACACACACAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
676 | 1271 | 1.270571 | ACACACAGACACACACACACA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
677 | 1272 | 1.128507 | CACACACAGACACACACACAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
678 | 1273 | 1.437625 | CACACACAGACACACACACA | 58.562 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
679 | 1274 | 0.096976 | GCACACACAGACACACACAC | 59.903 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
680 | 1275 | 1.357991 | CGCACACACAGACACACACA | 61.358 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
681 | 1276 | 1.348250 | CGCACACACAGACACACAC | 59.652 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
682 | 1277 | 2.460275 | GCGCACACACAGACACACA | 61.460 | 57.895 | 0.30 | 0.00 | 0.00 | 3.72 |
683 | 1278 | 1.775039 | ATGCGCACACACAGACACAC | 61.775 | 55.000 | 14.90 | 0.00 | 0.00 | 3.82 |
684 | 1279 | 1.523484 | ATGCGCACACACAGACACA | 60.523 | 52.632 | 14.90 | 0.00 | 0.00 | 3.72 |
685 | 1280 | 1.082561 | CATGCGCACACACAGACAC | 60.083 | 57.895 | 14.90 | 0.00 | 0.00 | 3.67 |
686 | 1281 | 1.523484 | ACATGCGCACACACAGACA | 60.523 | 52.632 | 14.90 | 0.00 | 0.00 | 3.41 |
687 | 1282 | 1.082561 | CACATGCGCACACACAGAC | 60.083 | 57.895 | 14.90 | 0.00 | 0.00 | 3.51 |
688 | 1283 | 1.523484 | ACACATGCGCACACACAGA | 60.523 | 52.632 | 14.90 | 0.00 | 0.00 | 3.41 |
689 | 1284 | 1.369568 | CACACATGCGCACACACAG | 60.370 | 57.895 | 14.90 | 1.98 | 0.00 | 3.66 |
690 | 1285 | 0.811616 | TACACACATGCGCACACACA | 60.812 | 50.000 | 14.90 | 0.00 | 0.00 | 3.72 |
691 | 1286 | 0.516877 | ATACACACATGCGCACACAC | 59.483 | 50.000 | 14.90 | 0.00 | 0.00 | 3.82 |
692 | 1287 | 1.999024 | CTATACACACATGCGCACACA | 59.001 | 47.619 | 14.90 | 0.00 | 0.00 | 3.72 |
693 | 1288 | 1.999735 | ACTATACACACATGCGCACAC | 59.000 | 47.619 | 14.90 | 0.00 | 0.00 | 3.82 |
694 | 1289 | 2.378445 | ACTATACACACATGCGCACA | 57.622 | 45.000 | 14.90 | 0.00 | 0.00 | 4.57 |
695 | 1290 | 3.863424 | AGTAACTATACACACATGCGCAC | 59.137 | 43.478 | 14.90 | 0.00 | 34.29 | 5.34 |
696 | 1291 | 3.862845 | CAGTAACTATACACACATGCGCA | 59.137 | 43.478 | 14.96 | 14.96 | 34.29 | 6.09 |
697 | 1292 | 3.245284 | CCAGTAACTATACACACATGCGC | 59.755 | 47.826 | 0.00 | 0.00 | 34.29 | 6.09 |
698 | 1293 | 3.802139 | CCCAGTAACTATACACACATGCG | 59.198 | 47.826 | 0.00 | 0.00 | 34.29 | 4.73 |
699 | 1294 | 4.127171 | CCCCAGTAACTATACACACATGC | 58.873 | 47.826 | 0.00 | 0.00 | 34.29 | 4.06 |
700 | 1295 | 5.116180 | CACCCCAGTAACTATACACACATG | 58.884 | 45.833 | 0.00 | 0.00 | 34.29 | 3.21 |
701 | 1296 | 4.781087 | ACACCCCAGTAACTATACACACAT | 59.219 | 41.667 | 0.00 | 0.00 | 34.29 | 3.21 |
702 | 1297 | 4.020928 | CACACCCCAGTAACTATACACACA | 60.021 | 45.833 | 0.00 | 0.00 | 34.29 | 3.72 |
703 | 1298 | 4.020839 | ACACACCCCAGTAACTATACACAC | 60.021 | 45.833 | 0.00 | 0.00 | 34.29 | 3.82 |
704 | 1299 | 4.020928 | CACACACCCCAGTAACTATACACA | 60.021 | 45.833 | 0.00 | 0.00 | 34.29 | 3.72 |
705 | 1300 | 4.020839 | ACACACACCCCAGTAACTATACAC | 60.021 | 45.833 | 0.00 | 0.00 | 34.29 | 2.90 |
706 | 1301 | 4.161876 | ACACACACCCCAGTAACTATACA | 58.838 | 43.478 | 0.00 | 0.00 | 34.29 | 2.29 |
707 | 1302 | 4.813750 | ACACACACCCCAGTAACTATAC | 57.186 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
708 | 1303 | 5.331906 | TGTACACACACCCCAGTAACTATA | 58.668 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
709 | 1304 | 4.161876 | TGTACACACACCCCAGTAACTAT | 58.838 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
710 | 1305 | 3.574749 | TGTACACACACCCCAGTAACTA | 58.425 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
711 | 1306 | 2.400573 | TGTACACACACCCCAGTAACT | 58.599 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
712 | 1307 | 2.914695 | TGTACACACACCCCAGTAAC | 57.085 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
713 | 1308 | 6.384595 | ACATATATGTACACACACCCCAGTAA | 59.615 | 38.462 | 16.85 | 0.00 | 39.68 | 2.24 |
714 | 1309 | 5.900699 | ACATATATGTACACACACCCCAGTA | 59.099 | 40.000 | 16.85 | 0.00 | 39.68 | 2.74 |
715 | 1310 | 4.719773 | ACATATATGTACACACACCCCAGT | 59.280 | 41.667 | 16.85 | 0.00 | 39.68 | 4.00 |
716 | 1311 | 5.056480 | CACATATATGTACACACACCCCAG | 58.944 | 45.833 | 17.86 | 0.00 | 39.39 | 4.45 |
717 | 1312 | 4.471747 | ACACATATATGTACACACACCCCA | 59.528 | 41.667 | 17.86 | 0.00 | 39.39 | 4.96 |
718 | 1313 | 4.814234 | CACACATATATGTACACACACCCC | 59.186 | 45.833 | 17.86 | 0.00 | 39.39 | 4.95 |
719 | 1314 | 5.424757 | ACACACATATATGTACACACACCC | 58.575 | 41.667 | 17.86 | 0.00 | 39.39 | 4.61 |
720 | 1315 | 8.481974 | TTTACACACATATATGTACACACACC | 57.518 | 34.615 | 17.86 | 0.00 | 39.39 | 4.16 |
747 | 1342 | 9.794719 | TCTACACTCACACTTAGTATAGCATAT | 57.205 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
748 | 1343 | 9.623000 | TTCTACACTCACACTTAGTATAGCATA | 57.377 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
749 | 1344 | 8.521170 | TTCTACACTCACACTTAGTATAGCAT | 57.479 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
750 | 1345 | 7.933215 | TTCTACACTCACACTTAGTATAGCA | 57.067 | 36.000 | 0.00 | 0.00 | 0.00 | 3.49 |
753 | 1348 | 9.848710 | AGCTATTCTACACTCACACTTAGTATA | 57.151 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
754 | 1349 | 8.754991 | AGCTATTCTACACTCACACTTAGTAT | 57.245 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
755 | 1350 | 8.577048 | AAGCTATTCTACACTCACACTTAGTA | 57.423 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
756 | 1351 | 7.469537 | AAGCTATTCTACACTCACACTTAGT | 57.530 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
759 | 1354 | 8.934507 | GAATAAGCTATTCTACACTCACACTT | 57.065 | 34.615 | 0.00 | 0.00 | 41.00 | 3.16 |
772 | 1367 | 6.086785 | ACTCGGGTGTAGAATAAGCTATTC | 57.913 | 41.667 | 0.00 | 0.00 | 43.77 | 1.75 |
773 | 1368 | 7.432059 | GTTACTCGGGTGTAGAATAAGCTATT | 58.568 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
774 | 1369 | 6.293845 | CGTTACTCGGGTGTAGAATAAGCTAT | 60.294 | 42.308 | 0.00 | 0.00 | 35.71 | 2.97 |
775 | 1370 | 5.008019 | CGTTACTCGGGTGTAGAATAAGCTA | 59.992 | 44.000 | 0.00 | 0.00 | 35.71 | 3.32 |
776 | 1371 | 4.201990 | CGTTACTCGGGTGTAGAATAAGCT | 60.202 | 45.833 | 0.00 | 0.00 | 35.71 | 3.74 |
777 | 1372 | 4.040376 | CGTTACTCGGGTGTAGAATAAGC | 58.960 | 47.826 | 0.00 | 0.00 | 35.71 | 3.09 |
778 | 1373 | 5.490139 | TCGTTACTCGGGTGTAGAATAAG | 57.510 | 43.478 | 0.00 | 0.00 | 40.32 | 1.73 |
779 | 1374 | 6.542005 | TGTATCGTTACTCGGGTGTAGAATAA | 59.458 | 38.462 | 0.00 | 0.00 | 40.32 | 1.40 |
780 | 1375 | 6.054941 | TGTATCGTTACTCGGGTGTAGAATA | 58.945 | 40.000 | 0.00 | 0.00 | 40.32 | 1.75 |
781 | 1376 | 4.883585 | TGTATCGTTACTCGGGTGTAGAAT | 59.116 | 41.667 | 0.00 | 0.00 | 40.32 | 2.40 |
782 | 1377 | 4.260985 | TGTATCGTTACTCGGGTGTAGAA | 58.739 | 43.478 | 0.00 | 0.00 | 40.32 | 2.10 |
783 | 1378 | 3.872696 | TGTATCGTTACTCGGGTGTAGA | 58.127 | 45.455 | 0.00 | 0.00 | 40.32 | 2.59 |
784 | 1379 | 4.825546 | ATGTATCGTTACTCGGGTGTAG | 57.174 | 45.455 | 0.00 | 0.00 | 40.32 | 2.74 |
785 | 1380 | 5.122519 | TGTATGTATCGTTACTCGGGTGTA | 58.877 | 41.667 | 0.00 | 0.00 | 40.32 | 2.90 |
786 | 1381 | 3.947196 | TGTATGTATCGTTACTCGGGTGT | 59.053 | 43.478 | 0.00 | 0.00 | 40.32 | 4.16 |
787 | 1382 | 4.556942 | TGTATGTATCGTTACTCGGGTG | 57.443 | 45.455 | 0.00 | 0.00 | 40.32 | 4.61 |
788 | 1383 | 5.581126 | TTTGTATGTATCGTTACTCGGGT | 57.419 | 39.130 | 0.00 | 0.00 | 40.32 | 5.28 |
789 | 1384 | 6.477688 | ACATTTTGTATGTATCGTTACTCGGG | 59.522 | 38.462 | 5.32 | 0.00 | 40.32 | 5.14 |
790 | 1385 | 7.459394 | ACATTTTGTATGTATCGTTACTCGG | 57.541 | 36.000 | 5.32 | 0.00 | 40.32 | 4.63 |
791 | 1386 | 9.229784 | ACTACATTTTGTATGTATCGTTACTCG | 57.770 | 33.333 | 5.32 | 0.00 | 34.42 | 4.18 |
796 | 1391 | 8.323140 | GCGTTACTACATTTTGTATGTATCGTT | 58.677 | 33.333 | 17.14 | 0.00 | 35.37 | 3.85 |
797 | 1392 | 7.488792 | TGCGTTACTACATTTTGTATGTATCGT | 59.511 | 33.333 | 17.14 | 0.00 | 35.37 | 3.73 |
798 | 1393 | 7.833539 | TGCGTTACTACATTTTGTATGTATCG | 58.166 | 34.615 | 14.70 | 14.70 | 35.62 | 2.92 |
947 | 1608 | 6.588348 | AAAGCTTTGCCGATATATTTTTGC | 57.412 | 33.333 | 11.80 | 0.00 | 0.00 | 3.68 |
950 | 1611 | 8.466798 | ACAACTAAAGCTTTGCCGATATATTTT | 58.533 | 29.630 | 22.02 | 0.00 | 0.00 | 1.82 |
960 | 1621 | 3.068165 | AGGTTGACAACTAAAGCTTTGCC | 59.932 | 43.478 | 22.02 | 9.06 | 30.18 | 4.52 |
979 | 1641 | 0.610687 | GTTGGTGCTCTAGCTCAGGT | 59.389 | 55.000 | 3.26 | 0.00 | 42.66 | 4.00 |
1007 | 1669 | 1.634960 | GAGGAGGAGGGTAGTATGCC | 58.365 | 60.000 | 0.00 | 0.00 | 41.82 | 4.40 |
1044 | 1706 | 4.664677 | GCGGTGGCAGTGACGAGT | 62.665 | 66.667 | 0.00 | 0.00 | 39.62 | 4.18 |
1103 | 1768 | 1.813862 | GCCCTAGCATTTCGTATGCCA | 60.814 | 52.381 | 17.44 | 7.24 | 45.59 | 4.92 |
1206 | 1871 | 6.401047 | CGATACGTAATTTGCATTCATCGGAT | 60.401 | 38.462 | 0.00 | 0.00 | 31.58 | 4.18 |
1224 | 1889 | 0.376152 | CGTACTGGCTGTCGATACGT | 59.624 | 55.000 | 0.00 | 0.00 | 35.17 | 3.57 |
1234 | 1899 | 0.321919 | TAGTGGACGTCGTACTGGCT | 60.322 | 55.000 | 25.41 | 7.09 | 0.00 | 4.75 |
1303 | 1968 | 2.108952 | AGACCTTCACCTCAATGCCTTT | 59.891 | 45.455 | 0.00 | 0.00 | 0.00 | 3.11 |
1312 | 1977 | 3.125316 | CACGCAATAAAGACCTTCACCTC | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
1418 | 2083 | 2.104170 | ACTTCGGGCTAGAGGAGAAAG | 58.896 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
1489 | 2154 | 3.616956 | AAGCAACATGATCGAAGAGGA | 57.383 | 42.857 | 0.00 | 0.00 | 43.63 | 3.71 |
1502 | 2167 | 7.346751 | AGAAAGAAGGAAACATTAAGCAACA | 57.653 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1505 | 2170 | 6.262273 | ACGAAGAAAGAAGGAAACATTAAGCA | 59.738 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
1510 | 2175 | 8.507249 | CAATCTACGAAGAAAGAAGGAAACATT | 58.493 | 33.333 | 0.00 | 0.00 | 34.73 | 2.71 |
1547 | 2213 | 2.392613 | AAAACAAGCAGCGACAGCCG | 62.393 | 55.000 | 0.00 | 0.00 | 46.67 | 5.52 |
1548 | 2214 | 0.936297 | CAAAACAAGCAGCGACAGCC | 60.936 | 55.000 | 0.00 | 0.00 | 46.67 | 4.85 |
1549 | 2215 | 1.543106 | GCAAAACAAGCAGCGACAGC | 61.543 | 55.000 | 0.00 | 0.00 | 45.58 | 4.40 |
1550 | 2216 | 0.248580 | TGCAAAACAAGCAGCGACAG | 60.249 | 50.000 | 0.00 | 0.00 | 37.02 | 3.51 |
1551 | 2217 | 0.172127 | TTGCAAAACAAGCAGCGACA | 59.828 | 45.000 | 0.00 | 0.00 | 43.75 | 4.35 |
1585 | 2251 | 3.701040 | ACAATGGGAGTACATGAATTGGC | 59.299 | 43.478 | 0.00 | 0.00 | 30.97 | 4.52 |
1616 | 2285 | 7.148086 | GCACCATTTAATATCACTTGGTCTCAA | 60.148 | 37.037 | 0.00 | 0.00 | 35.35 | 3.02 |
1624 | 2293 | 8.766994 | ACATAAGGCACCATTTAATATCACTT | 57.233 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
1626 | 2295 | 7.803189 | CGAACATAAGGCACCATTTAATATCAC | 59.197 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
1633 | 2302 | 4.580868 | TCACGAACATAAGGCACCATTTA | 58.419 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1637 | 2311 | 2.746904 | CAATCACGAACATAAGGCACCA | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
1638 | 2312 | 2.477863 | GCAATCACGAACATAAGGCACC | 60.478 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1646 | 2320 | 7.292292 | CAAATGAATTTTGCAATCACGAACAT | 58.708 | 30.769 | 0.00 | 0.00 | 38.42 | 2.71 |
1721 | 2396 | 6.482308 | GTGCCACAATACGATTATACCTTCTT | 59.518 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1728 | 2403 | 6.768381 | TCCATTTGTGCCACAATACGATTATA | 59.232 | 34.615 | 11.67 | 0.00 | 38.00 | 0.98 |
1734 | 2409 | 3.567576 | TTCCATTTGTGCCACAATACG | 57.432 | 42.857 | 11.67 | 2.96 | 38.00 | 3.06 |
1750 | 2425 | 6.769512 | AGAGCTAATTAAGTGACAGTTTCCA | 58.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1804 | 2480 | 7.169982 | CGGTAAAGCTATCTTCAAGATCGAAAT | 59.830 | 37.037 | 2.18 | 0.00 | 36.20 | 2.17 |
1824 | 2500 | 1.821753 | CCACATGGGAAATGCGGTAAA | 59.178 | 47.619 | 0.00 | 0.00 | 40.01 | 2.01 |
1830 | 2506 | 5.343307 | AAAAGATACCACATGGGAAATGC | 57.657 | 39.130 | 0.00 | 0.00 | 41.15 | 3.56 |
1859 | 2538 | 8.458843 | GGCAGCACTAATAGATCAAAAGTTTTA | 58.541 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1860 | 2539 | 7.039784 | TGGCAGCACTAATAGATCAAAAGTTTT | 60.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
1881 | 2560 | 0.738975 | CTCCAATGCTGACATGGCAG | 59.261 | 55.000 | 25.09 | 25.09 | 43.15 | 4.85 |
1939 | 2618 | 0.321564 | CATGTTTGGCCTGACTCCGA | 60.322 | 55.000 | 3.32 | 0.00 | 0.00 | 4.55 |
1961 | 2640 | 6.070995 | ACCATGACTTTCCGACTGTCTAATAA | 60.071 | 38.462 | 6.21 | 0.00 | 0.00 | 1.40 |
1987 | 2666 | 0.991355 | TGATCCCGTGGGGCCTTAAT | 60.991 | 55.000 | 0.84 | 0.00 | 43.94 | 1.40 |
1988 | 2667 | 1.208844 | TTGATCCCGTGGGGCCTTAA | 61.209 | 55.000 | 0.84 | 0.00 | 43.94 | 1.85 |
2000 | 2680 | 0.605319 | TGTTCTGGTGCGTTGATCCC | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2038 | 2718 | 9.620259 | GTTGGATCCTTTCAATCTATAGTTCTT | 57.380 | 33.333 | 14.23 | 0.00 | 0.00 | 2.52 |
2067 | 2747 | 3.649073 | TCATCTTCGTTCGTGTGTCATT | 58.351 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2069 | 2749 | 2.785713 | TCATCTTCGTTCGTGTGTCA | 57.214 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2137 | 2817 | 3.262660 | TGTTTCTGGCAGATCTCATGAGT | 59.737 | 43.478 | 19.50 | 9.83 | 0.00 | 3.41 |
2153 | 2833 | 1.032014 | GCATGTGGTGGTGTGTTTCT | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2156 | 2836 | 0.469705 | ATGGCATGTGGTGGTGTGTT | 60.470 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2209 | 2889 | 6.027482 | TGGAATAAGTTTGTCCCTACCTAGT | 58.973 | 40.000 | 2.88 | 0.00 | 0.00 | 2.57 |
2215 | 2895 | 9.053472 | TCTAAAGATGGAATAAGTTTGTCCCTA | 57.947 | 33.333 | 2.88 | 0.00 | 0.00 | 3.53 |
2216 | 2896 | 7.928873 | TCTAAAGATGGAATAAGTTTGTCCCT | 58.071 | 34.615 | 2.88 | 0.00 | 0.00 | 4.20 |
2221 | 2901 | 9.219603 | TGTCACTCTAAAGATGGAATAAGTTTG | 57.780 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2224 | 2904 | 7.331791 | GGTGTCACTCTAAAGATGGAATAAGT | 58.668 | 38.462 | 2.35 | 0.00 | 0.00 | 2.24 |
2261 | 2943 | 4.380531 | CTTAGGTTTGTGTCTTGCTCAGA | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2283 | 2966 | 3.843999 | TCTGGTGTTTTTGTGAGTTTGC | 58.156 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.