>input_sequence_80049
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-------------------------------------------------------------ATGGCGAGGCATACTACCC
TCCTCCTCGTGGCAATAGTAGCCATACTCGTCACTGCCACCGCCGCCACCCTGGTCAAGGCCCCAGCCCCCGCAG---AC
AAGCCGATGGCATACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGGAGGGAGTGCATGACTACGAACT
CCGACTGGATGGCTCCTTTGAGGTACACTTATCCGATGAATGCAAATTACGTATCGACAGCCAGTACGACGTCCACTACA
ACACTCGGGTCACCGGGAACATAAAAAATGACACGATCAGCGGCCTCAAAGGCATTGAGGTGAAGGTCTTTATTGCGTGG
GTCAGCATAAAGGAGGTCGGCCGCGATGGGGATGAGCTTAGGCTGCACGCCGGGATGATATCCAAGTCATTCCCGGTCGA
CGCTTTCTCCTCTAGCCCGAAGTGTAACTGA-------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>chr3A_1_TraesCS3A01G482800
CACCAGTGTACACGTTGGGTGTCATGCGCTATACATTGCCGGTAGTCGGTAGAGGCCATATGCCAAGTTTTCCTAGGGAA
TAGGTCGCCTTGCAAGATTCAAAAGGTATTTGCGCGCCAAGATAAATAATAATTGCCATTATGGCCTTTGAGAAGAACTT
GGTGAATGTTATTAAAGTAGAAACTCGATTTCTGCTAAAATGCGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TACATATTCAATTCCA
CCTCAATGAATGTAAAGATC------T---TCT---TGGAGGGAATTAAATGTTTATGTTGTTACTACGATTTGAAAAAT
TAATGAGCATATATATCTCT---TATAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTGTGTGTGTGTGTGTGTGTG
TGTCTGTGTGTGCGCATGTGTGTATAGTTACTGGGGTGTGTGTACATATATGTGTGTAAATATATGCTATACTAAGTGTG
AGTGTAGAATAGCTTATTCTACACCCGAGTAACGATACATACAAAATGTAGTAACGCAATATATAAAATATAGTGATTTT
TCTAAAAATATAGTAAAATACAAACTTGGATAGTAAAACTAATATTTTTA------------------------------
----------------------------------AAATTACTATAGATTTATCTCTATATATAGTCTGCATCTTTCGATG
CTTTC--GCAAAAATATATCGGCAAAGCTTTAG-TTGTCAACCTGAGCTAGAGCACCAACAATGGCGAGGCATACTACCC
TCCTCCTCGTGGCAATAGTAGCCATACTCGTCACTGCCACCGCCGCCACCCTGGTCAAGGCCCCAGCCCCCGCAG---AC
AAGCCGATGGCATACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGGAGGGAGTGCATGACTACGAACT
CCGACTGGATGGCTCCTTTGAGGTACACTTATCCGATGAATGCAAATTACGTATCGACAGCCAGTACGACGTCCACTACA
ACACTCGGGTCACCGGGAACATAAAAAATGACACGATCAGCGGCCTCAAAGGCATTGAGGTGAAGGTCTTTATTGCGTGG
GTCAGCATAAAGGAGGTCGGCCGCGATGGGGATGAGCTTAGGCTGCACGCCGGGATGATATCCAAGTCATTCCCGGTCGA
CGCTTTCTCCTCTAGCCCGAAGTGTAACTGAGGCTCGACTGCAAGATCGACACAAGTGTCGCCACCCGAGTCTTCCTCTT
CGATCATGTTGCTTAATGTTTCCTTCTTTCTTCGTAG-ATTGATGATGCATGCGGCTGTCGCTGCTTGTTTTGCAACCCC
ATGCCATCTTGCCAATTCATGTACTCCCATT---GTTGTATGGGTTGAGACCAAGTGATATT----AA-ATGGTGCCTTA
TGTTCGTGATTGCAAAATTCATTTGTGAGATTTCAATTAACGAGGTGCTGGACGGTGAATGC-GTTATCTGATCAAAGAA
GGTATAATCGTATTGTGGCACAAATGGAAACTGTCACTTAATTAGCTCTCGGCATCATCTTAGATATAATTGGAATT-TA
TTTCGATCTTGAAGATAGCTTTACCGCATTTCCCATGTGGTATCTTTTTT-GCG--ATAAAACTTTTGATCTATTAGTGC
TGCCATGTCAGCATTGGAGTGAGCCAAAGGGGCGCCGTCGTCATCGTCCCTTCCTCATCGGAGTCAGGCCAAACATGTTT
TATTAGACAGTCGGAAAGTCATGGTATTAAGGCCCC-ACGGGATCAACGCACCAGAACAGTAAACATCGCGTATGAAAAG
AACTATAGATTGAAAGGATCCAACATAATGACACACGAACGAAGATGAACACAGACTGGATCCATGCAGATCCACCAAAC
ACTAGCACCGATTGAAACTCATGAGATCTGCCAGAAACACACCACCACATGCCATTTGATGATGCTAGATGCATCTGCCA
AAATGGGCACTAGGTAGGGACAAACTTATTCCATCTTTAGAGTGACACCGT--CATGGTCTTTCTGAGCAAGACACAAAC
C-TAAGCAAACTCACAAAAACACCAG--ATGG-GGCAAGATCCCTCCCGCCGGCAAGGGCCAGGGTCCACCACTCCTTCA
TAAAGATATTGATAGATACTTGCATATAGAAATTGACAAACACATGTTGGTGTGTGACCTTGAAAAAATAAACATAGAA-
-----TATTCTACACACT
>chr3A_80
-------------------------------------------------------------------------------A
TAGGCCGCCTTGCATGATTCAAAAGGTATT-GCAGGCCAAGATAAATAATAATGGCCCTCATGGCCTTTGAGAAGAACTT
GGTGAATGTTATTAAAGTAGAAAATTAATTTCTGCTAAAATAAGATACTCCCCACCGTTTCTAAATATAAGTCTTTTACA
ATATGAACTACATACGGAGTAAAATGAATGAATATACACTATAAAATGTGTCTATATACATCTGTATGTAGCGGAAATCC
CTTTTGGAGCTCGGCCTCAAGTGAGGCCTCCAAATTCAAATTTGAAATTACATCAAAATTCATATTTTTACATTTCAAAA
AATTCTGAAAAAATACAGATATAAATGAAGGCATAACACACATGTGTGTAAATTTTCAGTTCAAAATACGTTGAAATGAG
GGTTGTGTAAAACAGACAAATCTAGGGCTGTTTAACACATGATACTATTTATCCTCGCAGGCCATGAATTTGTCTTTTTT
GTACAGCTCGCAACTCAAGGTATTTCATCATGAAATTTTTCACGCATGTGAGTTACATCCTTACATACACGCATATTTTT
TTAGAATTTTTTGAACCATAAAAGTCTGAATTTGAATTTTTCAAATATAAAGGCCTCCATGGAGCTTGGCCTCCAAAACG
CCTTTCTGTGTATGTAGTCTATATTTAAATCTTTAAAAAGACTTATATTTAGGAAGGGAGAGAGTACATATTTAATTGCA
CCTCAATGAATGTAAAGATT------TGTTTTT---TGGAGGGAAGTAAAATTTTATTTTGTTACGACGATTTGAAAAAT
TAATGAGCATATATATCTTA---TATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTAATTTATATGCC----
----------------------------------------AATATTTTT------AGTAGGAGTGTATTTCCTATTAAAG
TTGGTGAGTACTGAATACACATTTATTGTATACCAAATATTTATAGATTTATCTCTATATATAGCCTGCATCTTTGGATG
CTTTC--ACACAAATATATCAGCACAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACCAACAATGGCAAAGCACACTACCC
TCCTCCTTGTGGCAATAGTAGCAATCCTTCTCACTGCCACCGCCGCCACCCTAGCCAACACCCCCGCCCCTGCAGC---C
AAGCCTACAGCGTATGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGCAGGGAGTGCATGACTACGAGCT
CCGACCAGACGGTTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTTGTATTGACGGCCAGTACGACATCCACTACA
GCACTCGGGTTGCCGGGAACATAAAAAATGACATGATCAGCGGCCTTGAAGGCA--------------------------
-------TACAGGATGTCGGCCGCGATGGCAATGAGCTTAGGCTGCACACCGGGATCATATCCAAGTCATTCTCGGTTGA
CGTTTTCTCCTCTAGCCCTAAGTGTAACTGAGTCTCGATTGCAAGATCGACACAAGTGTCGCCACCCGAGTCCGCCTCTT
CGACCACGTCGCTTGACATTTCCTTCTTTCTTCGCGGCATTGATGGTGCAC------GTTGCTGCTTGATTTGCAATCCC
GTGCCATCTTACTAATTTTTGTACTCCCATT---GTTTTATGGGCTGAGACCGAATGATATA----AAGAA-GTTCCTTT
TGTTCGTGATTGCAAAATTCATTTGTGAGATTTCAATTAACGTGGTGTTTGACGGTGAATCC-GTTATCTGATCAGATAA
AGCATAATGGTATTTTGGCACAACAATAAATTTTCACTTAATTAGCTCTGTACATCATCTTAGATACATCTGAATTT-TT
GT-GGATCTTGACGATAGC-TTACCACATTTCCCATGTGGTATCTTTTTTT-TGCAAGGAAACGTTCGATCTATTAATCA
TGTCATATCAGCATTGGAGCGAACCGAAGGTACGCCGCAGTCATCGCCCCTCC--------AGTTTGGCCAAACTTGTTG
TATTAGATAGTCAAGAAGACATCGGGCTAAGGCCCC-ACATGTTCAGCGCACCAGAAGAGCAAACATCTACGATGAAGAG
AACTATAGATTGAAAGGATCCAACATGAAGACACATAAACGAAGATGAACAAAGGCTGGATCTAAACATATCCACCAAAC
AATAGCACCAACTGAATCTCGTGAGATTTGCCGGAGACACACCTTCACA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3A_84
--------------------------------------------------------------------------------
---GTCGCCTTGAATGGTTTAAAAGGTATT-GCGGGCCGAGATAAATAATAATGGACCTCGGGGCCTTTGAGAAGAATTT
GGTGAATGTTATTAAAGTAGAAAATTAATTTCCGCTAAAATAAGA-----------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------GACATATTTAATTCCA
CCTCAATGAATGTACAGTAAAGATTAT---TTT---TTGAGGGAATTAAATGTTTATTTTGCTGCTATGATTTGAAAAAT
TAATGAGCATATATATCTTA---TATT-----------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TATCTAATTTATATGAG----
----------------------------------------AATATTTTT------AGTAGGGGTATATTTCCAATTAACT
TTGGTGAGTACTGAATACACATTTATTGTATACCAAATATTTATAAATTTATCTCTC--TATAGCCTGCATCTTTTTGTG
CTGAC--ACACAAATATATTTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACCAACAATGGCGAAGCACACTACCC
TCCTCCTCGTGGCAATAGTAGACATCCTTCTCACTGCCACCGCCGCCACCCTGGCCAAGGCCCTAGCCCCCGCAGC---C
AAGCCGACGGCGTACGAAATGCTAGGGCGATATGGCTTCCCACAGGGCATCCTCCCGCAGGGAGTGCATGACTACAAGCT
CCGACCGGACGGCTCCTCTGAGGTACACTTCTCCGATGAATGCAAATTGTGTGTCGACGGCCAGTACGACATCCACTACA
GCACTCGGGGCGCCGGGAACATAAAAAATGACACGATCAGCACTCTTGAAGGCATTAAGGTGAAGGTCTTTGTTGCGTGG
GTCAGCATAAAGGAGGTTGGCCGTGATGGGGATGAGCTTAGGCTGCACGCCGGGATGATATCCAAGTCATTCCCGGTAGA
TGTTTTCTCCTCTAGCCCTAAGTGTAACTGAGGCTCGACTGCAAGATCGACACAAGTGTCCCCATCCCAGTCCGCCTCTT
CGATCACGTCGCTTGACGTTTCCTTCTTTCTTCGTAGGATTGATTATGCAC------GTTGGTGCTTGTTTTGCAACCCC
TTACCATCTTACCAATTCATGTACTCCCATTTTAGTAGTATGGGCTGAGATTGAATGATATA----AA-AAAGTGCCTTT
TGTTCGTGATTGCAAAATTTATTTGTGAGATTTCAATTAACGAGGTGCTGGACGGTGAATGC-GTTATCTAATCAGAGAA
GGCATAATGGTATTGTGGCACAAAAGGAAACTTTCACTTAATTAGCTCTCAACGTCGTCTTAGATATAATTAGAATT-TT
TTT--ATCTTAAAGATAGC-TTACCACATTTCCCATCTGGTATCTTTTTTTGCG--AGGAAACTTTTGATCATTTAATCA
AGCCACGTCAGCATTGGAGCGAGCCAAAGACGCGCT-TCGTCATCGCCCCTCCCTCACCGGAGTCAGGCCAAACTTGTTG
TATTAGATAGTCAGAAACTCATCGTGCTAAGGCCCCCACAGGATCAGTGCACCAGGACAGTAAACCTTGCCTATGAAGAA
AAATATAGATCGAAAGGATCCAGCATGAAGACACACGACA-AAGATGAACACAGACTGGATCCATGCAGATCCACCAAAC
ACTAGCACCGGCTGAATCTCATGAGTCTGCC-----ACACACCACCACATGGCCTTCGATGACGCTAGATGCATCA-CCA
AGACGGGCGCTAGGCGGGGTGAACCTTATTCCATCTTTAGAGTGATACCATCGCATGGTCTTCCTGAGCAAGACACAAAC
CCTACACAAACTCACAAAAACAACTG--ATGGAGGCAAGATCCCTCCCGCCGGCAAGGGTCAGGGTCCACCACTCCTTCA
TAAAGATATTGATAGATACTTGCATATAGATATTGACAAACAGATGTTGGTGTGTTACCTTGAAAAAATAAA--------
------------------
>chr3D_206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------TACATAATTAATTGCA
CCTCAATGAATGTAAAGATT------T---TTTTTTTGGAGGGAAGTAAATGTTT-TTTTATTGCTACGATTTGAAAAAT
TAATGAGCATATATATCTTA---T--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CTAATTTATATGAC----
----------------------------------------AATATTTTC------A------GTATATTTCCTACTAACT
TTGGTGAGTACTGAATACACATTTATTGTGCACCAAATATTTACAGATTTATCTCTATATATAGCCTGCATCTTTCTATG
CATTC--ACACAAATATATCTGCAAAGATTTAG-TTGTCAGCCTGAGCTAGAGCACCAACAATGGCAAAGCACACTACCC
TCCTCCTCGTGGCAATAGTAGCCATCCTTCTCACTGCCACCGCCGCCACCCTGGCGAACGCCCCCGCCCCCGCAGC---C
AAGCCGACAGCGTACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGCAGGGAGTGCATGACTACGAGCT
CCGACCGGATGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTCGTATTGACGGCCAGTACGACATCCACTACA
GCACTCGGGTTGCCGGGAACATAAAAAATGACACGATCAGCGGCCTCGAAGGCATTAAGGTGAAGGTCTTTATTGCGTGG
GCTAGCATAAAGGATGTCGGCCGCGATGGCAATGAGCTTAGGCTGCACGCCGGGATCATATCCAAGTCATTCCCGGTCGA
CGTTTTCTCCTCTAGCCCGAAATGTAACTGAGGCTCGACTGCAAGATCGACACAAGTGTCGCCG-CCCAGTCTGCCTCTT
CGATCACGTCGCTTGGCATTTCCTTCTTTCTTCATACGATTGATGATGCAC------GTTGCTGCTTGTTTTGCAATCCC
GTGCCATCTTACCAATTAATGTACTCCCATT---GTAGTATGGGCAGAGACTGAATGATATA----AAGAA-GTGCCTTT
TGTTCATGATTGCAA------TTTGTGAGATTTCAATTAACGAGGTGTAGGACAGTGAATGTATTTATCTGATCACAGAA
GGCATGATGGTATTGTGGCACAAAA-GAAACTTTCAATTAATTAGCTCTCAGCGTCATCTTAGATATAATTGGATTT-TT
TT-CGA---------------------------------GTATCTTTTTGTGTG--AGGAAACTTTTAATCTAGTAATCA
TGTCATGTCAGCATTGGAACGAGCCGAAGGTGCGCCGCCGTCATCGCCCCTCCCTCACC--AGTCAGGCCAAAATTGTTG
TATTA--CAGTCAGAAAGTCATGGTGCTAAGGCCCC-ACACGACCAACACACCAGAACAGCAACCGCCACCTATGAAGAA
AAGTATAGATCGAAAGGATCCAACGTGAAGACACACGAATGAAGATGGACACAGACTGGATCCATGCAGATCCACCAAAC
ACTACCACCGACTGAATCTCACGAGATCTGCCGGAGACACACCACCACGTGCCCTTCGACGACGCTAGATGCATCA-CCA
AAACGGGGGCTAGGCGGGGAGAATATTATTCCATCTTTAG-GTGATACCGTCACATCGTCTTCCTGAGCAAGACACAAAC
-----------TCACAAAACCCCTAAAAATAG-GGCAAGATCCCTCATGCCGTCAAGGGCCACGGTCCACCGCACCTTCA
TATAGATATTGATAGATACTTGCGTATAGATACTGACAAACACATGTTGGTGTGTTACCTTGAAAAATTAAACATAGCAA
T-----------------
>chr3D_206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------TACATATTAAATTCCA
CCTCAATGAATGTAAAGATT------T---TTT---TTGAGGGAATTAAATGTTTATTTTGTTGCTATGATTTGAAAAAT
TAATGAGCATATATATTTTT---TATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTAACATATATTAC----
----------------------------------------AATATTTTT------A------GTATATTTCCCATTAACT
TTGGTGAGTACTGAATACACATTTATTGTACACCAAATATTTATAGATTTATCTCTATATATAGCTTGCATCTTTCGATG
CTCTC--ACACAAATATATCTGCAAAGCTTTAGTTTGTCAGCCTGAGCTAGAGCACCAACAATGGCGAAGCATACTACCC
TCCTCCTCGTGGCAATAGTAGCCGTCCTTCTCACTGCCACCGCCGCCACCCTGGCCAAGGCCCCCTCCCCCACAACCAAC
AAGCCGACAGCGTACGAAATGCTAGGGTGATATGGCTTCCCACCGGGGATCCTCCCGGAGGGAGTTCATGACTACGAGCT
CCACCTAGACGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTCGTGTTGACGGCCAGTACGACATCCACTACA
GCACTCGGGTCGCCGGGAACATAAAAAATGAAACGATCAGCGGCCTCGAAGGCATTAAGGTGAAGGCCTTTATTGCGTGG
ATCAGCATACGGGAGGTCGGCCGCGATGGCGATGAGCTTAGGCTGCACGCCGGGATGATATCCAAGTCATTCCCCGTCGG
CGATATCTCCTCTAGCCCTAAGTGTAACTGAGGCTCGACTCCAAGATAGACACATG--------------------TCTT
CGATCACGTCGCTTGAGGTTTCCTTCTTTCTTCGTAGGATTGATGATGCAC------GTTGCCGATTGTTTTGCAATCCC
GTGCCATCTTACCAATTCATGTACTCCCATT---GTAGTATGGGCTGAGACTGAATGATATA----AA-AA-GTGCCTTT
TGTTCGTGATTGCAAAATTTATTTGTGAGATTTCAGTTAT-GAGGTTTTGGATGGTGAACGC-TTTATCTGATTAGAGAA
AGCATAATGGTATTGTGGCACAAAAATAAACTTTTACTTAATTAGCTCTCAACATCATCTTAGATATAACTTGATTT-TT
T--GGATCTTGAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3B_206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------TACATATTTAATTCCA
CCTCAATGAATGTAAATATT------T---TTT---TGGAGGGAATTAAATGTTTATTTTGTTGCTAAGATTTGAAAAAT
TAATGAGCATATATATCTTGTAGTATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTAATTTATATGAA----
----------------------------------------AATATTTTTAGTAGGA------GTATATTTCCCATTAACT
TTGGTGAGTACTGAATACACATTTATTGCACACCAAATATTTATAGATTTATCTCTATATATAGCTTGCATCTTTCGATG
GTCTC--ACACAAATATATCTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACCAACAATGGCGAAGCACACTACCC
TCCTCCTTGTACCAATAGTAGCCATCCTTCTCACTGCCACCGCTGCCACCCTGGCCAAGGCCCCTGCCCCCACAGCCAAC
AAGCCGACGGCGTACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGGAGGGAGTGCATGACTATGAGCT
TCGACCGAACGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAATTTCGTGTTGACGGCCAATACGACGTCCACTACA
GCACCCGGGTCGCCGGGAACATAAAAAATGACACGATCAGCGGCCTCGAAGGCATTAAGGTGAAGGTCTTTATTGCGTGG
GCTAGCATAAAGGAGGTTGGCCGCGATGGGGATGAGCTTAGGCTACTCGCTGGGATCATATCCAAGTCATTCCCGGTCGG
CGATTTCTCCTCTAGCCCTAAGTGTAACTGAGGCTTGACTCCAAGATCGACACAAG--------------------TCTT
CGATCACGTCGCTTGACGTTTCCTTCTTTCTTCGTAGGATTGATGATGCAC------GTTGCTGCTTGTTTTGCAATCCC
GTGCCATCTTACCAATTAATGTACTCCCATT---GTAGTATGGGCCGAGACTGAATGATATATATAAAGAA-GTGCCATT
TGTTCATGATTGCAAAATTCGTTTGTGAGATTTCAATTAACGAGGTGCTGGACAGTGAATGT-GTTATCTGGTCAGAGAA
GGCATGATGGTATTGTGGCACAAAA-GAAACTGTCACTTAATTAGCTCTTAGCGTCATCTTAGATATAATTGGATTTGTT
TT-CGATCTTGAAGATAGC-TTACCACATTTCGCATGTGGTATCTTTTTTT-TG--AGGAAACTTTTGATCTGTTAATCA
TGTCATGTCAGCATTGGAACAAGCCGAAAGCGCGCCACCGTCATCGCCCCTCCCTCACCTCAGTCAGGCCAAAAATTTTG
TATTG--CAGTCGGAAAGTCCTGGTGCTAAGGCCCC-ACATGACCAACACACCAGAACAACAACCGTCACCTATGAAGAG
AAGTATAGATCGAAAGGATCCAACGTGAAGACACACGAACGAAGATGAACACAGACTGGATCCATGCAGATCCACCAAAC
ACTACCACCGATTGAATCTCATGACATCTGCCGAAGACACACCACCACATGCCCTTCGATGACACGAGATGCATCA-TCG
AAATGGGGGCTAGGCGGGGAGAATATTATTCCATCTTTACGGTGATACCTTCGCATCATCTTCCTGAGCAAGACACAAAC
CCTAAACAAACTCACAAGACCCCTAAAAATGG-GGCAAGATCCCTCCTGCCGGCAAGGGCCATGGTCCACCACTCCGTCA
TATAGATATTGATAGATACTTGCATATAGATACTGACAAACACATGTTGGTGTGTTACCTTGAAAAATTAAACGTAGCAA
T-----------------
>chr3B_206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TACATATTTAATTCCA
CCTCAATGAATGTAAAGATT------T---TTT---TGGAGGGAATTAAATGTTTATTTTGTTTCTACGATTTGAAAAAT
TAATGAGCATATATATCTTGTAGTATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTAATTTATATGAA----
----------------------------------------AATATTTTTAGTAGGA------GTATATTTCCCATTAACT
TTAGTGAGTACTGAATACACATTTATTGCACACCAAATATTTATAGATTTATCTCTATATATAGCTTGCATCTTTCGATG
CTCTC--ACACAAATATATCTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACCAACAATGGCGAAGCACACTACCC
TCCTCCTTGTGGCAATAGTAGCCATCCTTCTCATTGCCACCGCCGCCACCCTGGACAAGGACCCAGCCCCCGCAGC---C
AAGCCGACAGCATACGAAATGCTAGGGCGATATGGCTTCCCACAGGGCATCCTCCCGCAGGGAGTGCATGACTACGAGCT
CCGACCGGACGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTCGTATTGACGGCCAGTACGACATCCACTATA
GCACTCGGGTTGCCGGGAACATAAAAAATGACACGATCAGCGGCCTTGAAGGCATTAAGGTGAAGGTATTTTTTGCGTGG
ATCAGCATACAGGATGTCGGCCGGGATGGCAATGAGCTTAGGCTGCACGCCGGGATCATATCCAAGTCATTCCCGGTCGA
CGTTTTCTCCTCTAGCCCGAAATGTAACTGAGGCTCGACTGCAAGATCGACACAAGTGTCGCTA-CCCAATCTGCCTCTT
CGATCACGTCGCTTGACGTTTCCTTCTTTCTTCATAGGATTGATGATGCAC------GTTGCAGCTTGTTTTGCAATCCC
GTGCCATCTTACCAATTAATGTACTCCCATT---GTAGCATGGGCTGAGACTGAATGATATATATAAAGAA-GTGCCTTT
TGTTCATGATTGCAAAATTCATTTGTGAGATTTCAATTAACGAGGTGCTGGACAGTGAATGT-GTTATCTGATCCGAGAA
GGCATGATGGTATTGTGGCACAAAA-CAAACTTTCAATTAATTAGCTCTCAGTGTCATCTTAGATATAATTGGATTT-TT
TT-CGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3B_206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TACATATTTAATTCCA
CCTCAATGAATGTAAAGATT------T---TTT---TGGAGGGAATTAAATGTTTATTTTGTTGCTACGATTTGAAAAAT
TAATGAGCATATATATCTTGTAGTATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTAATTTATATGAA----
----------------------------------------AATATTTTTAGTAGGA------GTATATTTCCCATTAACT
TTGGTGAGTACTGAATACACATTTATTGCACACCAAATATTTATAGATTTATCTCTATATATAGCTTGCATCTTTCGATG
CTCTCATACACAAATATATCTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACAAACAATGGCGAAGCACACTACCT
TCCTCCTCGTAGCAATAGTAGCCATCCTTCTCACTGCCACTGCCGCCACCCTGGCCAAGGCCCCCGCCCCCACAGCCAAC
AAGCCGACGGCATACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGGAGGGAGTGCATGACTACGAGCT
CCGACCAGACGGCTCCTTTGAGGT-------------------AAATTTCGTGTTGACGGCCAGTACGACGTCCACTACA
GCACCCGGGTCGCCGGGAACATAAAAAATGACACGATCAGCAGCCTCGAAGGCATTAAGGTGAAGGTCTTTATTGCGTGG
GCCAGCATAAAGGAGGTTGGCCGCGATGGGGATGAGCTTAGGCTGCACGCTGGGATCATATCCAAGTCATTCCCGGTCGG
CGATTTCTCCTCTAGCCCAAAGTGTAACTGAAGCTCGACTCCAAGATCGACACAAG--------------------TCTT
CGATCACATCGCTTGACGTTTCCTTCTTTCTTCGTAGGATTGAAGATGCAC------GTTGCTGCTTGTTTTGTAATCCT
GTGTCATCTTACCAATTAATGTACTCCCATT---GTAGTATGGGCTGAGA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3D_904
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TATAGATTTATCTCTATATATAGCCTGCATCTTTCTGTG
CTTAC--ACACAA--ATATCTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACTAGCAATGGCGAAGCATACTACCC
TCCTCCTCATGGCAATAGTAAACATCCTTCTCACTTCCACCGCCGCCACCCTGGCCAAGGCCCCCGCCCCCGCAGCCAAC
AAGCCGACGGCGTACGAAATGCTAGGGCGATATGGCTTCCCACCGGGCATCCTCCCGCAGGGAGTGCATGACTACGAGCT
CCGACCGGACGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTCGTATTGACGGCCAGTACGACATCCACTACA
GCACTCGGGTTGCCGGGAACATAAAAAATGACACGATCAGCGGCCTCGAAGGCATTAAGGTGAAGGTCTTTATTGCGTGG
ATCAGCATACAGGATGTCGGCCGCGATGGCAATGAGCTTAGGCTGCACGCCGGGATCATATCCAAGTCATTCCCGGTCGA
CGTTTTCTCCTCTAGCCCGCAATGTAACTGAGGCTCGACTGCAAGATCGACACAAGTGTCGACAT-CCAGTTTGCCTCTT
CGATCACGTCGCTTGATGTTTCCTTCTTTCTTCGTAGGATTGATGATGCAC------GTTTCTGCTTGTTTTGCAATCCC
GTGCCATCTTACCAATTCATGTACTCCTATT---GTAGTATGGGCTGAGATTGAATGT----TATAAAGAA-GTGCCTTT
TCTTCATGATTGCAAAATTCATTTGTGAGATTTCAATTAACGAGGTGCTGGACAGTGAATGT-GTTATCTGATCAGAGAA
GGCATGATGGTATTGTGGCACAAAA-GAAACTGTCACTTAATTAGCTCTTAGCGTCATCTTACATATAATTGGATTT-TT
TT-CGATCTTGAAGATAGC-TTACCACATTTTGCATGTGGTATCTTTTTTTGCG--AGGAAACTTTTGATCTGTTAATCA
TGTCATGTCAGCATTGGAACGAGCTGAAAGCGCGCCTCCGTCATCGCCCCTCCCTCACCGGAGTCAGGCCAAAATTGTTG
TATTA--CAGTCGGAAAGACATGGTGCTAAGGCCCT-ACATGACCAACACACAAGAACAGCAACTGTCGCCAATGAAGAG
AAGTATAGATCGAAAGGATCCAACGTGAAGACACACGAACGAAGATGAACATAGACTGGATCCATGCAGATCCACCAAAC
ACTACCACCGACTGAATCTCATGAGATCTACTGGAGACACACCACCACGTGCCCTTCGATGACGTGAGATGCATCA-CCG
AAACGGGGGCTAGGCGAGGAGAATATTATTCCATCTTTAGGGTGACACCTTCGCATCATCTTCCTGAGCAAGACACAAAC
CCTAAACAAACTCACAAAACCCCTAAAAATGG-GGCAAGATCCCTCCTGCCGGCAAGGGCCACGGTCCACCACTCCTTCA
TATAGATATTGATATATACTTGCATATAGATACTGACAAACACATGTTGGTGTGTTACCTTGAAAAAGTAAACGTAATAA
TGTAGTATTCTACACACT
>chr3D_904
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TATAGATTTATCTCTATATATAGCCTGCATCTTTCTGTG
CTTAC--ACACAAATATATCTGCAAAGCTTTAG-TTGTCAGCCTGAGCTAGAGCACTAGCAATGGCGAAGCATACTACCC
TCCTCCTCATGGCAATAGTAAACATCCTTCTCACTGCCACCGCCGCCACCCTGGCCAAGGCCCCCGCCCCCGCAGCCAAC
AAGCCGACGGCGTACGAAATGCTAGGGAGATATGGCTTCCCGCCGGGCATCCTCCCGGAGGGAGTGCTTGACTACGAGCT
CCGACCAGACGGCTCCTTTGAGGTACACTTCTCCGATGAATGCAAACTTCGTGTTGACGGCCAGTACGACATCCACTACA
ACACTCGGGTCGCTGGGAACATAAAAAATGACACGCTCGGCGGCCTCGAAGGCATTAAGGTGAAGGTCTTTATTGCGTGG
GTCAGTATAAAGGAGGTTGACCGCGATGGGGATGAGCTTAGGCTGCACGCCGGGATGATATCCAAGTCATTCCCGGTCGG
CGATTTCTCCTCTAGCCCTAAGTGTAACTGAGGCTCGTCTCCAAGATGGACACAAG--------------------TCTT
CGATCACGTCGCTTGAGGTTTCCTTCTTTCTTCGTAGGATTGATGATGCAC------GTTACCTATTGTTTTGCAATCCC
GTGCCATCTTACCAATTCATGTACTCCCATT---GTAGTATGGGCTGAGACTGAATGATATA----AA-AA-GTGCCTTT
TGTTCGTGATTGCAAAATTTATTTGTGAGATTTTAG-TTACGAGGTTTTGGACGGTCAATGC-TTTATCTGATTAGAGAA
AGCATAATGGTATTGTGGCACAAAAAGAAACTTTTACTTGATTAGCTCTCAACATCATCTTAGATATAACTGGATTT-TT
T--GGATCTTGAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------S---------------S---S------------------S---S-S--------------------
-----------------------S-SS--------------SS-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------S-----------S-------------------------S----------------------
------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-----S-S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--------------------------------------SSS-----------------------S---------------
-------S--S---------S-------------------S---------------------------S-----------
-------------------------S--SS------------------------S-------------------------
-------S---------------------------------------------------------------------S--
------------------------------S-----------------S---------S---------------------
-----------S-----------------------------------S--------S-----------------------
--------------------------------------------------------------------------------
--S----------------------------------------------------------------------S------
------S--S----S-----------------------------------SSSSSSS--S--------------------
S---------S---------------------------------S-------S-S------S--------SS-------S
---------------------------------------------------------------------------S----
--S-----S---------------S-------------------------S----------------------------S
-------------------S-----S-------------------------------SS-----------------S-SS
-------------------S----------S---------------S----S-----S---------------------S
-------------------------SS------------S------------------------------S------S--
--------------------------S-S---------------------------------------------------
----------------S---------------S--S-----------------S--S-----S------------SS---
--------S-----SS----S--S--------------------------------------S-----------------
-----S--------------------------------------------------------------------------
------------------------------S------------------------S---------------------S--
------------------
>forward_1293
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GTGTGTG
TGTCTGTGTGTGC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_2217
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGTCGCTGCTTGTTTTGCAA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
