Multiple sequence alignment - TraesCS3A01G465500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G465500 chr3A 100.000 2708 0 0 1 2708 699762407 699765114 0.000000e+00 5001.0
1 TraesCS3A01G465500 chr3A 78.528 978 167 27 1111 2062 699750895 699751855 1.070000e-168 603.0
2 TraesCS3A01G465500 chr3A 74.918 1531 272 65 566 2060 698858311 698856857 4.990000e-167 597.0
3 TraesCS3A01G465500 chr3A 79.656 349 63 8 1348 1692 699976677 699977021 7.490000e-61 244.0
4 TraesCS3A01G465500 chr3A 96.000 125 4 1 2483 2606 521303517 521303641 4.570000e-48 202.0
5 TraesCS3A01G465500 chr3A 71.500 1000 211 52 1099 2054 699633125 699634094 1.640000e-47 200.0
6 TraesCS3A01G465500 chr3A 83.684 190 27 3 529 714 699438486 699438297 2.770000e-40 176.0
7 TraesCS3A01G465500 chr3A 83.684 190 27 4 529 714 699450432 699450243 2.770000e-40 176.0
8 TraesCS3A01G465500 chr3A 83.684 190 27 4 529 714 699459919 699459730 2.770000e-40 176.0
9 TraesCS3A01G465500 chr3A 83.696 184 27 3 534 714 699443615 699443432 1.290000e-38 171.0
10 TraesCS3A01G465500 chr3A 83.246 191 26 5 529 714 699457485 699457296 1.290000e-38 171.0
11 TraesCS3A01G465500 chr3A 83.246 191 26 5 529 714 699462243 699462054 1.290000e-38 171.0
12 TraesCS3A01G465500 chr3A 82.632 190 29 3 529 714 699431283 699431094 6.000000e-37 165.0
13 TraesCS3A01G465500 chr3A 83.333 186 24 6 534 714 699464554 699464371 6.000000e-37 165.0
14 TraesCS3A01G465500 chr3A 78.656 253 40 8 573 812 157045035 157044784 3.610000e-34 156.0
15 TraesCS3A01G465500 chr3D 94.857 2139 68 17 351 2470 565604013 565606128 0.000000e+00 3302.0
16 TraesCS3A01G465500 chr3D 78.304 1203 200 27 530 1707 565535511 565536677 0.000000e+00 719.0
17 TraesCS3A01G465500 chr3D 74.984 1563 273 78 536 2060 564308529 564307047 1.780000e-171 612.0
18 TraesCS3A01G465500 chr3D 76.260 615 116 21 1100 1704 564392615 564392021 1.580000e-77 300.0
19 TraesCS3A01G465500 chr3D 73.083 613 129 30 1099 1690 565452711 565453308 4.600000e-43 185.0
20 TraesCS3A01G465500 chr3D 76.454 361 65 12 534 881 565162776 565163129 7.700000e-41 178.0
21 TraesCS3A01G465500 chr3D 76.374 364 64 14 534 883 565258642 565258997 2.770000e-40 176.0
22 TraesCS3A01G465500 chr3D 98.947 95 0 1 2614 2708 565606131 565606224 4.640000e-38 169.0
23 TraesCS3A01G465500 chr3D 89.524 105 9 2 2605 2708 565559331 565559434 6.080000e-27 132.0
24 TraesCS3A01G465500 chr3D 82.524 103 17 1 2604 2706 564522201 564522100 3.710000e-14 89.8
25 TraesCS3A01G465500 chr3D 84.416 77 10 2 1248 1323 564904736 564904661 1.040000e-09 75.0
26 TraesCS3A01G465500 chr3D 92.308 52 4 0 2011 2062 565558794 565558845 1.040000e-09 75.0
27 TraesCS3A01G465500 chr3B 93.511 2096 80 19 337 2404 753672546 753674613 0.000000e+00 3066.0
28 TraesCS3A01G465500 chr3B 77.950 1551 259 43 530 2039 753560994 753562502 0.000000e+00 893.0
29 TraesCS3A01G465500 chr3B 75.000 1560 272 65 538 2060 752041289 752039811 1.780000e-171 612.0
30 TraesCS3A01G465500 chr3B 76.416 1183 188 43 536 1693 752050222 752049106 3.050000e-154 555.0
31 TraesCS3A01G465500 chr3B 87.440 207 17 7 12 214 753672344 753672545 2.100000e-56 230.0
32 TraesCS3A01G465500 chr3B 82.266 203 30 2 527 723 756105944 756105742 1.290000e-38 171.0
33 TraesCS3A01G465500 chr3B 91.597 119 10 0 2590 2708 753674634 753674752 6.000000e-37 165.0
34 TraesCS3A01G465500 chr6D 90.211 950 81 7 1109 2046 380452260 380451311 0.000000e+00 1229.0
35 TraesCS3A01G465500 chr6D 87.156 763 48 27 339 1087 380453112 380452386 0.000000e+00 821.0
36 TraesCS3A01G465500 chr6D 91.237 388 24 6 2089 2470 380451322 380450939 1.110000e-143 520.0
37 TraesCS3A01G465500 chr6D 93.162 117 7 1 2593 2708 380450929 380450813 1.290000e-38 171.0
38 TraesCS3A01G465500 chr6D 89.256 121 12 1 232 351 221864960 221864840 1.680000e-32 150.0
39 TraesCS3A01G465500 chr6D 87.179 78 7 1 53 127 380453271 380453194 4.800000e-13 86.1
40 TraesCS3A01G465500 chr6B 90.670 836 55 11 1662 2485 565399811 565400635 0.000000e+00 1090.0
41 TraesCS3A01G465500 chr6B 88.467 763 45 20 339 1087 565398339 565399072 0.000000e+00 881.0
42 TraesCS3A01G465500 chr6B 89.608 587 54 3 1072 1651 565399099 565399685 0.000000e+00 739.0
43 TraesCS3A01G465500 chr6B 92.174 115 9 0 2594 2708 565400634 565400748 2.160000e-36 163.0
44 TraesCS3A01G465500 chr6B 85.897 78 8 2 53 127 565398180 565398257 2.240000e-11 80.5
45 TraesCS3A01G465500 chr4A 95.588 136 3 3 2467 2601 580709473 580709340 5.870000e-52 215.0
46 TraesCS3A01G465500 chr5B 97.561 123 3 0 2479 2601 410690088 410690210 7.600000e-51 211.0
47 TraesCS3A01G465500 chr7A 98.305 118 2 0 2485 2602 85417370 85417253 9.830000e-50 207.0
48 TraesCS3A01G465500 chr5D 95.868 121 5 0 2486 2606 140016630 140016510 2.130000e-46 196.0
49 TraesCS3A01G465500 chr5D 90.678 118 9 2 233 348 490311621 490311738 3.610000e-34 156.0
50 TraesCS3A01G465500 chr5D 90.000 120 10 2 232 349 100549437 100549556 1.300000e-33 154.0
51 TraesCS3A01G465500 chr5A 94.531 128 5 2 2483 2609 513817949 513818075 2.130000e-46 196.0
52 TraesCS3A01G465500 chr7B 93.846 130 7 1 2477 2605 539687403 539687274 7.650000e-46 195.0
53 TraesCS3A01G465500 chr7B 94.286 105 5 1 236 339 531821043 531820939 2.790000e-35 159.0
54 TraesCS3A01G465500 chr2A 93.798 129 7 1 2486 2613 435799805 435799677 2.750000e-45 193.0
55 TraesCS3A01G465500 chr2D 90.476 147 11 3 2458 2603 451299386 451299530 9.900000e-45 191.0
56 TraesCS3A01G465500 chr2D 92.661 109 7 1 236 343 203448789 203448681 3.610000e-34 156.0
57 TraesCS3A01G465500 chr1D 93.750 112 4 3 232 340 80656644 80656533 6.000000e-37 165.0
58 TraesCS3A01G465500 chr4D 92.727 110 7 1 232 340 230473400 230473291 1.000000e-34 158.0
59 TraesCS3A01G465500 chr2B 90.756 119 10 1 232 349 514027918 514028036 1.000000e-34 158.0
60 TraesCS3A01G465500 chr2B 89.431 123 7 5 232 350 550975053 550974933 1.680000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G465500 chr3A 699762407 699765114 2707 False 5001.000000 5001 100.000000 1 2708 1 chr3A.!!$F4 2707
1 TraesCS3A01G465500 chr3A 699750895 699751855 960 False 603.000000 603 78.528000 1111 2062 1 chr3A.!!$F3 951
2 TraesCS3A01G465500 chr3A 698856857 698858311 1454 True 597.000000 597 74.918000 566 2060 1 chr3A.!!$R2 1494
3 TraesCS3A01G465500 chr3D 565604013 565606224 2211 False 1735.500000 3302 96.902000 351 2708 2 chr3D.!!$F6 2357
4 TraesCS3A01G465500 chr3D 565535511 565536677 1166 False 719.000000 719 78.304000 530 1707 1 chr3D.!!$F4 1177
5 TraesCS3A01G465500 chr3D 564307047 564308529 1482 True 612.000000 612 74.984000 536 2060 1 chr3D.!!$R1 1524
6 TraesCS3A01G465500 chr3D 564392021 564392615 594 True 300.000000 300 76.260000 1100 1704 1 chr3D.!!$R2 604
7 TraesCS3A01G465500 chr3B 753672344 753674752 2408 False 1153.666667 3066 90.849333 12 2708 3 chr3B.!!$F2 2696
8 TraesCS3A01G465500 chr3B 753560994 753562502 1508 False 893.000000 893 77.950000 530 2039 1 chr3B.!!$F1 1509
9 TraesCS3A01G465500 chr3B 752039811 752041289 1478 True 612.000000 612 75.000000 538 2060 1 chr3B.!!$R1 1522
10 TraesCS3A01G465500 chr3B 752049106 752050222 1116 True 555.000000 555 76.416000 536 1693 1 chr3B.!!$R2 1157
11 TraesCS3A01G465500 chr6D 380450813 380453271 2458 True 565.420000 1229 89.789000 53 2708 5 chr6D.!!$R2 2655
12 TraesCS3A01G465500 chr6B 565398180 565400748 2568 False 590.700000 1090 89.363200 53 2708 5 chr6B.!!$F1 2655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 527 0.037605 CACGACCACCACTTACTCCC 60.038 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2485 2884 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 3.879295 TGCAGATCAATAAAGCTAGCCAC 59.121 43.478 12.13 0.00 0.00 5.01
214 252 8.465999 GTGGTGATCATGTGGATAAAAACATAA 58.534 33.333 0.00 0.00 36.00 1.90
233 271 9.868277 AAACATAATACTCTCTCTGTTTCTGAG 57.132 33.333 0.00 0.00 32.94 3.35
234 272 8.588290 ACATAATACTCTCTCTGTTTCTGAGT 57.412 34.615 0.00 0.00 40.52 3.41
235 273 9.688091 ACATAATACTCTCTCTGTTTCTGAGTA 57.312 33.333 0.00 0.00 42.15 2.59
240 278 9.868277 ATACTCTCTCTGTTTCTGAGTAAAATG 57.132 33.333 0.00 0.00 41.56 2.32
241 279 7.957002 ACTCTCTCTGTTTCTGAGTAAAATGA 58.043 34.615 0.00 0.00 36.39 2.57
242 280 8.087750 ACTCTCTCTGTTTCTGAGTAAAATGAG 58.912 37.037 0.00 0.00 36.39 2.90
243 281 7.957002 TCTCTCTGTTTCTGAGTAAAATGAGT 58.043 34.615 4.20 0.00 32.50 3.41
244 282 7.869937 TCTCTCTGTTTCTGAGTAAAATGAGTG 59.130 37.037 4.20 0.00 32.50 3.51
245 283 7.726216 TCTCTGTTTCTGAGTAAAATGAGTGA 58.274 34.615 4.20 0.00 32.50 3.41
246 284 8.204160 TCTCTGTTTCTGAGTAAAATGAGTGAA 58.796 33.333 4.20 0.00 32.50 3.18
247 285 8.908786 TCTGTTTCTGAGTAAAATGAGTGAAT 57.091 30.769 0.00 0.00 0.00 2.57
248 286 8.993121 TCTGTTTCTGAGTAAAATGAGTGAATC 58.007 33.333 0.00 0.00 0.00 2.52
249 287 8.908786 TGTTTCTGAGTAAAATGAGTGAATCT 57.091 30.769 0.00 0.00 0.00 2.40
250 288 9.996554 TGTTTCTGAGTAAAATGAGTGAATCTA 57.003 29.630 0.00 0.00 0.00 1.98
252 290 9.996554 TTTCTGAGTAAAATGAGTGAATCTACA 57.003 29.630 0.00 0.00 0.00 2.74
253 291 8.988064 TCTGAGTAAAATGAGTGAATCTACAC 57.012 34.615 0.00 0.00 40.60 2.90
334 372 9.503399 AGACAAATATTTAAGAACGAAAGGAGT 57.497 29.630 0.00 0.00 0.00 3.85
335 373 9.543018 GACAAATATTTAAGAACGAAAGGAGTG 57.457 33.333 0.00 0.00 0.00 3.51
460 498 3.379688 CCGTTCCTGGTTACTAGGAGTAC 59.620 52.174 16.71 12.45 44.65 2.73
489 527 0.037605 CACGACCACCACTTACTCCC 60.038 60.000 0.00 0.00 0.00 4.30
490 528 1.214589 CGACCACCACTTACTCCCG 59.785 63.158 0.00 0.00 0.00 5.14
491 529 1.595357 GACCACCACTTACTCCCGG 59.405 63.158 0.00 0.00 0.00 5.73
492 530 1.152183 ACCACCACTTACTCCCGGT 60.152 57.895 0.00 0.00 0.00 5.28
493 531 1.190178 ACCACCACTTACTCCCGGTC 61.190 60.000 0.00 0.00 0.00 4.79
494 532 1.595357 CACCACTTACTCCCGGTCC 59.405 63.158 0.00 0.00 0.00 4.46
1116 1329 3.473625 TGATGATGCCTGCTACATCTTG 58.526 45.455 20.27 0.00 43.53 3.02
1407 1639 1.448893 TTGTAATGAGGCCGCGGAC 60.449 57.895 33.48 30.81 0.00 4.79
1419 1651 0.319555 CCGCGGACACCATCGATATT 60.320 55.000 24.07 0.00 0.00 1.28
1660 2009 6.759272 TCACTCAGTCTTACTAAATTGCAGT 58.241 36.000 0.00 0.00 0.00 4.40
1693 2042 7.881775 ACTCTTGTTCCACATACTTTCTTTT 57.118 32.000 0.00 0.00 0.00 2.27
1727 2099 8.424918 AGAATAATAGATGGTTCGTCTGAATGT 58.575 33.333 0.33 0.00 36.29 2.71
1731 2103 4.836825 AGATGGTTCGTCTGAATGTTGAT 58.163 39.130 0.00 0.00 36.29 2.57
1739 2117 3.373130 CGTCTGAATGTTGATGCTGTGAT 59.627 43.478 0.00 0.00 0.00 3.06
1763 2141 5.102953 TGGTGCTTCTTTATGTGCTAGAT 57.897 39.130 0.00 0.00 0.00 1.98
1785 2164 2.462456 TTGTACCTCTTCTGCTGCAG 57.538 50.000 23.31 23.31 0.00 4.41
1872 2255 5.620206 TCAAGAAGCTCACATTGTTTCCTA 58.380 37.500 0.00 0.00 0.00 2.94
2014 2402 6.582636 TCTGCGTGATGTTCCTATTATCTTT 58.417 36.000 0.00 0.00 0.00 2.52
2054 2443 4.578928 TGCTCTTTTAACTTGTGGTCTTCC 59.421 41.667 0.00 0.00 0.00 3.46
2066 2455 7.938715 ACTTGTGGTCTTCCTAGTATAATACG 58.061 38.462 0.00 0.00 34.23 3.06
2067 2456 6.889301 TGTGGTCTTCCTAGTATAATACGG 57.111 41.667 0.00 0.00 34.23 4.02
2068 2457 6.604171 TGTGGTCTTCCTAGTATAATACGGA 58.396 40.000 0.00 0.00 34.23 4.69
2069 2458 6.713903 TGTGGTCTTCCTAGTATAATACGGAG 59.286 42.308 0.00 0.00 34.23 4.63
2243 2637 3.563808 TGTTGAGACATTGTAACTGCCAC 59.436 43.478 0.00 0.00 0.00 5.01
2321 2719 6.154706 GGGAAGTTTTCTACTCATCTGGTCTA 59.845 42.308 0.00 0.00 35.54 2.59
2345 2744 3.776969 AGCAGAGGACAAGACCATCAATA 59.223 43.478 0.00 0.00 0.00 1.90
2399 2798 7.461749 AGTTGGAAGTTCCTTCTCATCATTTA 58.538 34.615 22.41 0.00 40.07 1.40
2404 2803 9.578439 GGAAGTTCCTTCTCATCATTTAAATTG 57.422 33.333 15.09 0.00 40.07 2.32
2435 2834 8.068893 TCTGTAGCTTTTTACAAGACGTTTAG 57.931 34.615 0.00 0.00 33.44 1.85
2436 2835 7.707893 TCTGTAGCTTTTTACAAGACGTTTAGT 59.292 33.333 0.00 0.00 33.44 2.24
2456 2855 1.160137 GAGTCCATGGCAGTGTCAAC 58.840 55.000 6.96 0.00 0.00 3.18
2470 2869 7.826744 TGGCAGTGTCAACAAATGTCTTATATA 59.173 33.333 0.00 0.00 0.00 0.86
2471 2870 8.840321 GGCAGTGTCAACAAATGTCTTATATAT 58.160 33.333 0.00 0.00 0.00 0.86
2495 2894 4.532314 AAGTTACAAAGTACTCCCTCCG 57.468 45.455 0.00 0.00 0.00 4.63
2496 2895 3.504375 AGTTACAAAGTACTCCCTCCGT 58.496 45.455 0.00 0.00 0.00 4.69
2497 2896 3.509184 AGTTACAAAGTACTCCCTCCGTC 59.491 47.826 0.00 0.00 0.00 4.79
2498 2897 1.264295 ACAAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2499 2898 0.172803 CAAAGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
2500 2899 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2501 2900 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2502 2901 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2503 2902 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2504 2903 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2505 2904 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2506 2905 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2507 2906 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2508 2907 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2509 2908 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2510 2909 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2511 2910 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2512 2911 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2513 2912 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2514 2913 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
2515 2914 2.537401 GTCCGGAAATACTTGTCCTCG 58.463 52.381 5.23 0.00 0.00 4.63
2516 2915 2.165030 GTCCGGAAATACTTGTCCTCGA 59.835 50.000 5.23 0.00 0.00 4.04
2517 2916 2.827322 TCCGGAAATACTTGTCCTCGAA 59.173 45.455 0.00 0.00 0.00 3.71
2518 2917 3.258872 TCCGGAAATACTTGTCCTCGAAA 59.741 43.478 0.00 0.00 0.00 3.46
2519 2918 4.081309 TCCGGAAATACTTGTCCTCGAAAT 60.081 41.667 0.00 0.00 0.00 2.17
2520 2919 4.034048 CCGGAAATACTTGTCCTCGAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2521 2920 4.034048 CGGAAATACTTGTCCTCGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2522 2921 5.183228 GGAAATACTTGTCCTCGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
2523 2922 5.823045 GGAAATACTTGTCCTCGAAATGGAT 59.177 40.000 0.00 0.00 35.87 3.41
2524 2923 6.990349 GGAAATACTTGTCCTCGAAATGGATA 59.010 38.462 0.00 0.00 35.87 2.59
2525 2924 7.497909 GGAAATACTTGTCCTCGAAATGGATAA 59.502 37.037 0.00 0.00 35.87 1.75
2526 2925 8.801882 AAATACTTGTCCTCGAAATGGATAAA 57.198 30.769 3.54 0.00 34.98 1.40
2527 2926 8.801882 AATACTTGTCCTCGAAATGGATAAAA 57.198 30.769 3.54 0.00 34.98 1.52
2528 2927 8.980481 ATACTTGTCCTCGAAATGGATAAAAT 57.020 30.769 3.54 0.00 34.98 1.82
2529 2928 7.088589 ACTTGTCCTCGAAATGGATAAAATG 57.911 36.000 3.54 0.00 34.98 2.32
2530 2929 6.095440 ACTTGTCCTCGAAATGGATAAAATGG 59.905 38.462 3.54 0.00 34.98 3.16
2531 2930 5.750524 TGTCCTCGAAATGGATAAAATGGA 58.249 37.500 0.00 0.00 35.87 3.41
2532 2931 6.364701 TGTCCTCGAAATGGATAAAATGGAT 58.635 36.000 0.00 0.00 35.87 3.41
2533 2932 6.262944 TGTCCTCGAAATGGATAAAATGGATG 59.737 38.462 0.00 0.00 35.87 3.51
2534 2933 6.263168 GTCCTCGAAATGGATAAAATGGATGT 59.737 38.462 0.00 0.00 35.87 3.06
2535 2934 7.444183 GTCCTCGAAATGGATAAAATGGATGTA 59.556 37.037 0.00 0.00 35.87 2.29
2536 2935 8.163408 TCCTCGAAATGGATAAAATGGATGTAT 58.837 33.333 0.00 0.00 0.00 2.29
2537 2936 8.454106 CCTCGAAATGGATAAAATGGATGTATC 58.546 37.037 0.00 0.00 0.00 2.24
2538 2937 9.224267 CTCGAAATGGATAAAATGGATGTATCT 57.776 33.333 0.00 0.00 0.00 1.98
2567 2966 9.975218 AACTAAAATAAGTCCAGATACAACCAT 57.025 29.630 0.00 0.00 0.00 3.55
2568 2967 9.975218 ACTAAAATAAGTCCAGATACAACCATT 57.025 29.630 0.00 0.00 0.00 3.16
2571 2970 7.645058 AATAAGTCCAGATACAACCATTTGG 57.355 36.000 0.00 0.00 37.00 3.28
2572 2971 4.927267 AGTCCAGATACAACCATTTGGA 57.073 40.909 3.01 0.00 36.97 3.53
2573 2972 4.848357 AGTCCAGATACAACCATTTGGAG 58.152 43.478 3.01 0.00 39.24 3.86
2574 2973 3.947834 GTCCAGATACAACCATTTGGAGG 59.052 47.826 3.01 0.00 39.24 4.30
2575 2974 3.849574 TCCAGATACAACCATTTGGAGGA 59.150 43.478 3.01 0.00 35.00 3.71
2576 2975 3.947834 CCAGATACAACCATTTGGAGGAC 59.052 47.826 3.01 0.00 37.00 3.85
2577 2976 4.567537 CCAGATACAACCATTTGGAGGACA 60.568 45.833 3.01 0.00 37.00 4.02
2578 2977 5.009631 CAGATACAACCATTTGGAGGACAA 58.990 41.667 3.01 0.00 37.00 3.18
2579 2978 5.124457 CAGATACAACCATTTGGAGGACAAG 59.876 44.000 3.01 0.00 40.82 3.16
2580 2979 3.312736 ACAACCATTTGGAGGACAAGT 57.687 42.857 3.01 0.00 40.82 3.16
2581 2980 4.447138 ACAACCATTTGGAGGACAAGTA 57.553 40.909 3.01 0.00 40.82 2.24
2582 2981 4.998051 ACAACCATTTGGAGGACAAGTAT 58.002 39.130 3.01 0.00 40.82 2.12
2583 2982 5.393866 ACAACCATTTGGAGGACAAGTATT 58.606 37.500 3.01 0.00 40.82 1.89
2584 2983 5.838521 ACAACCATTTGGAGGACAAGTATTT 59.161 36.000 3.01 0.00 40.82 1.40
2585 2984 6.326323 ACAACCATTTGGAGGACAAGTATTTT 59.674 34.615 3.01 0.00 40.82 1.82
2586 2985 6.590234 ACCATTTGGAGGACAAGTATTTTC 57.410 37.500 3.01 0.00 40.82 2.29
2587 2986 5.183140 ACCATTTGGAGGACAAGTATTTTCG 59.817 40.000 3.01 0.00 40.82 3.46
2588 2987 5.393027 CCATTTGGAGGACAAGTATTTTCGG 60.393 44.000 0.00 0.00 40.82 4.30
2591 2990 2.928116 GGAGGACAAGTATTTTCGGACG 59.072 50.000 0.00 0.00 0.00 4.79
2596 2995 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2603 3002 1.108776 TTCGGACGGAGGGAGTATTG 58.891 55.000 0.00 0.00 0.00 1.90
2613 3012 4.344102 CGGAGGGAGTATTGTTGAAGGATA 59.656 45.833 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.693095 TCAAAAAGCACAACAAAAGGTTCC 59.307 37.500 0.00 0.00 37.72 3.62
1 2 5.854431 TCAAAAAGCACAACAAAAGGTTC 57.146 34.783 0.00 0.00 37.72 3.62
3 4 6.206438 ACAAATCAAAAAGCACAACAAAAGGT 59.794 30.769 0.00 0.00 0.00 3.50
4 5 6.610456 ACAAATCAAAAAGCACAACAAAAGG 58.390 32.000 0.00 0.00 0.00 3.11
33 34 6.276832 ACTACCGAAGCAGAAGTGTTATAA 57.723 37.500 0.00 0.00 0.00 0.98
37 38 4.595762 TTACTACCGAAGCAGAAGTGTT 57.404 40.909 0.00 0.00 0.00 3.32
39 40 6.757010 ACATAATTACTACCGAAGCAGAAGTG 59.243 38.462 0.00 0.00 0.00 3.16
41 42 7.772332 AACATAATTACTACCGAAGCAGAAG 57.228 36.000 0.00 0.00 0.00 2.85
42 43 7.413657 GCAAACATAATTACTACCGAAGCAGAA 60.414 37.037 0.00 0.00 0.00 3.02
43 44 6.036735 GCAAACATAATTACTACCGAAGCAGA 59.963 38.462 0.00 0.00 0.00 4.26
44 45 6.183360 TGCAAACATAATTACTACCGAAGCAG 60.183 38.462 0.00 0.00 0.00 4.24
45 46 5.644206 TGCAAACATAATTACTACCGAAGCA 59.356 36.000 0.00 0.00 0.00 3.91
46 47 6.036735 TCTGCAAACATAATTACTACCGAAGC 59.963 38.462 0.00 0.00 0.00 3.86
47 48 7.534085 TCTGCAAACATAATTACTACCGAAG 57.466 36.000 0.00 0.00 0.00 3.79
48 49 7.766738 TGATCTGCAAACATAATTACTACCGAA 59.233 33.333 0.00 0.00 0.00 4.30
49 50 7.269316 TGATCTGCAAACATAATTACTACCGA 58.731 34.615 0.00 0.00 0.00 4.69
50 51 7.477144 TGATCTGCAAACATAATTACTACCG 57.523 36.000 0.00 0.00 0.00 4.02
123 127 2.189594 TCCTGTTGGTCTGCATTGAG 57.810 50.000 0.00 0.00 34.23 3.02
127 131 4.508551 TGAATATCCTGTTGGTCTGCAT 57.491 40.909 0.00 0.00 34.23 3.96
180 218 4.471025 TCCACATGATCACCACAGACTAAT 59.529 41.667 0.00 0.00 0.00 1.73
214 252 9.868277 CATTTTACTCAGAAACAGAGAGAGTAT 57.132 33.333 0.00 0.00 40.35 2.12
216 254 7.957002 TCATTTTACTCAGAAACAGAGAGAGT 58.043 34.615 0.00 0.00 41.88 3.24
217 255 8.087750 ACTCATTTTACTCAGAAACAGAGAGAG 58.912 37.037 0.00 0.00 36.91 3.20
218 256 7.869937 CACTCATTTTACTCAGAAACAGAGAGA 59.130 37.037 0.00 0.00 36.91 3.10
219 257 7.869937 TCACTCATTTTACTCAGAAACAGAGAG 59.130 37.037 0.00 0.00 36.91 3.20
220 258 7.726216 TCACTCATTTTACTCAGAAACAGAGA 58.274 34.615 0.00 0.00 36.91 3.10
221 259 7.953158 TCACTCATTTTACTCAGAAACAGAG 57.047 36.000 0.00 0.00 39.04 3.35
222 260 8.908786 ATTCACTCATTTTACTCAGAAACAGA 57.091 30.769 0.00 0.00 0.00 3.41
223 261 8.997323 AGATTCACTCATTTTACTCAGAAACAG 58.003 33.333 0.00 0.00 0.00 3.16
224 262 8.908786 AGATTCACTCATTTTACTCAGAAACA 57.091 30.769 0.00 0.00 0.00 2.83
226 264 9.996554 TGTAGATTCACTCATTTTACTCAGAAA 57.003 29.630 0.00 0.00 0.00 2.52
227 265 9.424319 GTGTAGATTCACTCATTTTACTCAGAA 57.576 33.333 0.00 0.00 35.68 3.02
228 266 8.807118 AGTGTAGATTCACTCATTTTACTCAGA 58.193 33.333 0.00 0.00 44.07 3.27
229 267 8.994429 AGTGTAGATTCACTCATTTTACTCAG 57.006 34.615 0.00 0.00 44.07 3.35
308 346 9.503399 ACTCCTTTCGTTCTTAAATATTTGTCT 57.497 29.630 11.05 0.00 0.00 3.41
309 347 9.543018 CACTCCTTTCGTTCTTAAATATTTGTC 57.457 33.333 11.05 0.00 0.00 3.18
310 348 9.063615 ACACTCCTTTCGTTCTTAAATATTTGT 57.936 29.630 11.05 0.00 0.00 2.83
316 354 9.280174 TGAAATACACTCCTTTCGTTCTTAAAT 57.720 29.630 0.00 0.00 34.76 1.40
317 355 8.665643 TGAAATACACTCCTTTCGTTCTTAAA 57.334 30.769 0.00 0.00 34.76 1.52
318 356 8.665643 TTGAAATACACTCCTTTCGTTCTTAA 57.334 30.769 0.00 0.00 34.76 1.85
319 357 8.665643 TTTGAAATACACTCCTTTCGTTCTTA 57.334 30.769 0.00 0.00 34.76 2.10
320 358 7.282450 ACTTTGAAATACACTCCTTTCGTTCTT 59.718 33.333 0.00 0.00 34.76 2.52
321 359 6.766467 ACTTTGAAATACACTCCTTTCGTTCT 59.234 34.615 0.00 0.00 34.76 3.01
322 360 6.956047 ACTTTGAAATACACTCCTTTCGTTC 58.044 36.000 0.00 0.00 34.76 3.95
323 361 6.766467 AGACTTTGAAATACACTCCTTTCGTT 59.234 34.615 0.00 0.00 34.76 3.85
324 362 6.289064 AGACTTTGAAATACACTCCTTTCGT 58.711 36.000 0.00 0.00 34.76 3.85
325 363 6.423905 TGAGACTTTGAAATACACTCCTTTCG 59.576 38.462 0.00 0.00 34.76 3.46
326 364 7.730364 TGAGACTTTGAAATACACTCCTTTC 57.270 36.000 0.00 0.00 33.06 2.62
327 365 7.255277 GCTTGAGACTTTGAAATACACTCCTTT 60.255 37.037 0.00 0.00 0.00 3.11
328 366 6.205658 GCTTGAGACTTTGAAATACACTCCTT 59.794 38.462 0.00 0.00 0.00 3.36
329 367 5.703130 GCTTGAGACTTTGAAATACACTCCT 59.297 40.000 0.00 0.00 0.00 3.69
330 368 5.470098 TGCTTGAGACTTTGAAATACACTCC 59.530 40.000 0.00 0.00 0.00 3.85
331 369 6.545504 TGCTTGAGACTTTGAAATACACTC 57.454 37.500 0.00 0.00 0.00 3.51
332 370 7.516198 AATGCTTGAGACTTTGAAATACACT 57.484 32.000 0.00 0.00 0.00 3.55
333 371 8.482429 CAAAATGCTTGAGACTTTGAAATACAC 58.518 33.333 0.00 0.00 0.00 2.90
334 372 8.196771 ACAAAATGCTTGAGACTTTGAAATACA 58.803 29.630 0.00 0.00 32.57 2.29
335 373 8.579682 ACAAAATGCTTGAGACTTTGAAATAC 57.420 30.769 0.00 0.00 32.57 1.89
378 416 4.810790 ACACAGAAATAGAGACTCGGTTG 58.189 43.478 0.00 0.00 0.00 3.77
460 498 0.676782 GGTGGTCGTGAGGAAATGGG 60.677 60.000 0.00 0.00 0.00 4.00
490 528 3.846430 GATCCACGTCCCGGGACC 61.846 72.222 41.24 25.65 41.76 4.46
491 529 2.758737 AGATCCACGTCCCGGGAC 60.759 66.667 39.19 39.19 41.40 4.46
492 530 2.758327 CAGATCCACGTCCCGGGA 60.758 66.667 22.63 22.63 37.64 5.14
493 531 3.849951 CCAGATCCACGTCCCGGG 61.850 72.222 16.85 16.85 0.00 5.73
494 532 4.530857 GCCAGATCCACGTCCCGG 62.531 72.222 0.00 0.00 0.00 5.73
1116 1329 4.424711 TGGACGGAGCCCAATGCC 62.425 66.667 0.00 0.00 42.71 4.40
1419 1651 1.702401 TCATAGTCCTGCAACACCCAA 59.298 47.619 0.00 0.00 0.00 4.12
1478 1712 5.882000 CACAATACCTTGATCTCAATGACCA 59.118 40.000 0.00 0.00 36.20 4.02
1693 2042 8.692710 ACGAACCATCTATTATTCTAGTGTCAA 58.307 33.333 0.00 0.00 0.00 3.18
1727 2099 1.003928 AGCACCAGATCACAGCATCAA 59.996 47.619 0.00 0.00 0.00 2.57
1731 2103 0.689055 AGAAGCACCAGATCACAGCA 59.311 50.000 0.00 0.00 0.00 4.41
1739 2117 3.423539 AGCACATAAAGAAGCACCAGA 57.576 42.857 0.00 0.00 0.00 3.86
1763 2141 2.158827 TGCAGCAGAAGAGGTACAAACA 60.159 45.455 0.00 0.00 0.00 2.83
1785 2164 9.376075 CTTATGGTGGATCTGATTCATACATAC 57.624 37.037 18.29 1.27 0.00 2.39
1884 2268 3.778265 AGGGTGTCAAAAACAGGCATAT 58.222 40.909 0.00 0.00 38.97 1.78
2063 2452 7.279090 CACATGTTGATTGGTAAATACTCCGTA 59.721 37.037 0.00 0.00 0.00 4.02
2064 2453 6.093495 CACATGTTGATTGGTAAATACTCCGT 59.907 38.462 0.00 0.00 0.00 4.69
2065 2454 6.093495 ACACATGTTGATTGGTAAATACTCCG 59.907 38.462 0.00 0.00 0.00 4.63
2066 2455 7.391148 ACACATGTTGATTGGTAAATACTCC 57.609 36.000 0.00 0.00 0.00 3.85
2067 2456 8.511321 TGAACACATGTTGATTGGTAAATACTC 58.489 33.333 1.07 0.00 38.56 2.59
2068 2457 8.402798 TGAACACATGTTGATTGGTAAATACT 57.597 30.769 1.07 0.00 38.56 2.12
2069 2458 9.638239 ATTGAACACATGTTGATTGGTAAATAC 57.362 29.630 1.07 0.00 38.56 1.89
2281 2679 3.046374 ACTTCCCTTCACCAACAGTAGT 58.954 45.455 0.00 0.00 0.00 2.73
2321 2719 2.373169 TGATGGTCTTGTCCTCTGCTTT 59.627 45.455 0.00 0.00 0.00 3.51
2345 2744 5.709631 TGTACAACTGCATCACCACATAATT 59.290 36.000 0.00 0.00 0.00 1.40
2399 2798 3.728385 AAGCTACAGAGGGAGCAATTT 57.272 42.857 1.26 0.00 41.36 1.82
2404 2803 3.939066 TGTAAAAAGCTACAGAGGGAGC 58.061 45.455 0.00 0.00 39.08 4.70
2435 2834 0.035317 TGACACTGCCATGGACTCAC 59.965 55.000 18.40 0.00 0.00 3.51
2436 2835 0.764271 TTGACACTGCCATGGACTCA 59.236 50.000 18.40 2.70 0.00 3.41
2470 2869 7.101700 CGGAGGGAGTACTTTGTAACTTTAAT 58.898 38.462 0.00 0.00 0.00 1.40
2471 2870 6.041979 ACGGAGGGAGTACTTTGTAACTTTAA 59.958 38.462 0.00 0.00 0.00 1.52
2472 2871 5.539955 ACGGAGGGAGTACTTTGTAACTTTA 59.460 40.000 0.00 0.00 0.00 1.85
2473 2872 4.346127 ACGGAGGGAGTACTTTGTAACTTT 59.654 41.667 0.00 0.00 0.00 2.66
2474 2873 3.899980 ACGGAGGGAGTACTTTGTAACTT 59.100 43.478 0.00 0.00 0.00 2.66
2475 2874 3.504375 ACGGAGGGAGTACTTTGTAACT 58.496 45.455 0.00 0.00 0.00 2.24
2476 2875 3.367806 GGACGGAGGGAGTACTTTGTAAC 60.368 52.174 0.00 0.00 0.00 2.50
2477 2876 2.827921 GGACGGAGGGAGTACTTTGTAA 59.172 50.000 0.00 0.00 0.00 2.41
2478 2877 2.450476 GGACGGAGGGAGTACTTTGTA 58.550 52.381 0.00 0.00 0.00 2.41
2479 2878 1.264295 GGACGGAGGGAGTACTTTGT 58.736 55.000 0.00 0.00 0.00 2.83
2480 2879 0.172803 CGGACGGAGGGAGTACTTTG 59.827 60.000 0.00 0.00 0.00 2.77
2481 2880 0.969409 CCGGACGGAGGGAGTACTTT 60.969 60.000 4.40 0.00 37.50 2.66
2482 2881 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
2483 2882 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2484 2883 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2485 2884 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2486 2885 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2487 2886 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2488 2887 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2489 2888 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2490 2889 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2491 2890 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2492 2891 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2493 2892 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2494 2893 2.537401 GAGGACAAGTATTTCCGGACG 58.463 52.381 1.83 0.00 36.95 4.79
2495 2894 2.165030 TCGAGGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 36.95 4.79
2496 2895 2.449464 TCGAGGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 36.95 5.14
2497 2896 2.953466 TCGAGGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 36.95 5.14
2498 2897 4.034048 CCATTTCGAGGACAAGTATTTCCG 59.966 45.833 0.00 0.00 36.95 4.30
2499 2898 5.183228 TCCATTTCGAGGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2500 2899 6.927294 ATCCATTTCGAGGACAAGTATTTC 57.073 37.500 0.00 0.00 38.13 2.17
2501 2900 8.801882 TTTATCCATTTCGAGGACAAGTATTT 57.198 30.769 0.00 0.00 38.13 1.40
2502 2901 8.801882 TTTTATCCATTTCGAGGACAAGTATT 57.198 30.769 0.00 0.00 38.13 1.89
2503 2902 8.840321 CATTTTATCCATTTCGAGGACAAGTAT 58.160 33.333 0.00 0.00 38.13 2.12
2504 2903 7.282224 CCATTTTATCCATTTCGAGGACAAGTA 59.718 37.037 0.00 0.00 38.13 2.24
2505 2904 6.095440 CCATTTTATCCATTTCGAGGACAAGT 59.905 38.462 0.00 0.00 38.13 3.16
2506 2905 6.318648 TCCATTTTATCCATTTCGAGGACAAG 59.681 38.462 0.00 0.00 38.13 3.16
2507 2906 6.184068 TCCATTTTATCCATTTCGAGGACAA 58.816 36.000 0.00 0.00 38.13 3.18
2508 2907 5.750524 TCCATTTTATCCATTTCGAGGACA 58.249 37.500 0.00 0.00 38.13 4.02
2509 2908 6.263168 ACATCCATTTTATCCATTTCGAGGAC 59.737 38.462 0.00 0.00 38.13 3.85
2510 2909 6.364701 ACATCCATTTTATCCATTTCGAGGA 58.635 36.000 0.00 0.00 39.97 3.71
2511 2910 6.639632 ACATCCATTTTATCCATTTCGAGG 57.360 37.500 0.00 0.00 0.00 4.63
2512 2911 9.224267 AGATACATCCATTTTATCCATTTCGAG 57.776 33.333 0.00 0.00 0.00 4.04
2541 2940 9.975218 ATGGTTGTATCTGGACTTATTTTAGTT 57.025 29.630 0.00 0.00 0.00 2.24
2542 2941 9.975218 AATGGTTGTATCTGGACTTATTTTAGT 57.025 29.630 0.00 0.00 0.00 2.24
2545 2944 8.531146 CCAAATGGTTGTATCTGGACTTATTTT 58.469 33.333 0.00 0.00 32.40 1.82
2546 2945 7.893302 TCCAAATGGTTGTATCTGGACTTATTT 59.107 33.333 0.00 0.00 36.34 1.40
2547 2946 7.410174 TCCAAATGGTTGTATCTGGACTTATT 58.590 34.615 0.00 0.00 36.34 1.40
2548 2947 6.969043 TCCAAATGGTTGTATCTGGACTTAT 58.031 36.000 0.00 0.00 36.34 1.73
2549 2948 6.381498 TCCAAATGGTTGTATCTGGACTTA 57.619 37.500 0.00 0.00 36.34 2.24
2550 2949 5.255397 TCCAAATGGTTGTATCTGGACTT 57.745 39.130 0.00 0.00 36.34 3.01
2551 2950 4.324563 CCTCCAAATGGTTGTATCTGGACT 60.325 45.833 0.00 0.00 36.34 3.85
2552 2951 3.947834 CCTCCAAATGGTTGTATCTGGAC 59.052 47.826 0.00 0.00 36.34 4.02
2553 2952 3.849574 TCCTCCAAATGGTTGTATCTGGA 59.150 43.478 0.00 0.00 36.34 3.86
2554 2953 3.947834 GTCCTCCAAATGGTTGTATCTGG 59.052 47.826 0.00 0.00 36.34 3.86
2555 2954 4.588899 TGTCCTCCAAATGGTTGTATCTG 58.411 43.478 0.00 0.00 36.34 2.90
2556 2955 4.927267 TGTCCTCCAAATGGTTGTATCT 57.073 40.909 0.00 0.00 36.34 1.98
2557 2956 5.010282 ACTTGTCCTCCAAATGGTTGTATC 58.990 41.667 0.00 0.00 36.34 2.24
2558 2957 4.998051 ACTTGTCCTCCAAATGGTTGTAT 58.002 39.130 0.00 0.00 36.34 2.29
2559 2958 4.447138 ACTTGTCCTCCAAATGGTTGTA 57.553 40.909 0.00 0.00 36.34 2.41
2560 2959 3.312736 ACTTGTCCTCCAAATGGTTGT 57.687 42.857 0.00 0.00 36.34 3.32
2561 2960 5.982890 AATACTTGTCCTCCAAATGGTTG 57.017 39.130 0.00 0.00 36.34 3.77
2562 2961 6.294508 CGAAAATACTTGTCCTCCAAATGGTT 60.295 38.462 0.00 0.00 36.34 3.67
2563 2962 5.183140 CGAAAATACTTGTCCTCCAAATGGT 59.817 40.000 0.00 0.00 36.34 3.55
2564 2963 5.393027 CCGAAAATACTTGTCCTCCAAATGG 60.393 44.000 0.00 0.00 31.20 3.16
2565 2964 5.414454 TCCGAAAATACTTGTCCTCCAAATG 59.586 40.000 0.00 0.00 31.20 2.32
2566 2965 5.414765 GTCCGAAAATACTTGTCCTCCAAAT 59.585 40.000 0.00 0.00 31.20 2.32
2567 2966 4.758165 GTCCGAAAATACTTGTCCTCCAAA 59.242 41.667 0.00 0.00 31.20 3.28
2568 2967 4.320870 GTCCGAAAATACTTGTCCTCCAA 58.679 43.478 0.00 0.00 0.00 3.53
2569 2968 3.615592 CGTCCGAAAATACTTGTCCTCCA 60.616 47.826 0.00 0.00 0.00 3.86
2570 2969 2.928116 CGTCCGAAAATACTTGTCCTCC 59.072 50.000 0.00 0.00 0.00 4.30
2571 2970 2.928116 CCGTCCGAAAATACTTGTCCTC 59.072 50.000 0.00 0.00 0.00 3.71
2572 2971 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
2573 2972 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
2574 2973 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2575 2974 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2576 2975 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2577 2976 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2578 2977 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2579 2978 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2580 2979 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2581 2980 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2582 2981 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2583 2982 1.479323 CAATACTCCCTCCGTCCGAAA 59.521 52.381 0.00 0.00 0.00 3.46
2584 2983 1.108776 CAATACTCCCTCCGTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
2585 2984 0.033796 ACAATACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
2586 2985 0.822164 AACAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2587 2986 1.829222 TCAACAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2588 2987 3.522553 CTTCAACAATACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
2591 2990 4.779993 ATCCTTCAACAATACTCCCTCC 57.220 45.455 0.00 0.00 0.00 4.30
2596 2995 8.821894 GTGATCAGTTATCCTTCAACAATACTC 58.178 37.037 0.00 0.00 33.22 2.59
2603 3002 7.440523 AACAAGTGATCAGTTATCCTTCAAC 57.559 36.000 15.38 0.00 33.22 3.18
2613 3012 6.881065 ACATATGCAGTAACAAGTGATCAGTT 59.119 34.615 10.10 10.10 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.