Multiple sequence alignment - TraesCS3A01G464200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G464200 chr3A 100.000 3191 0 0 1 3191 698709570 698712760 0.000000e+00 5893.0
1 TraesCS3A01G464200 chr3A 85.854 1428 170 15 1001 2415 698733229 698734637 0.000000e+00 1489.0
2 TraesCS3A01G464200 chr3A 97.252 473 13 0 2719 3191 713896057 713896529 0.000000e+00 802.0
3 TraesCS3A01G464200 chr3A 81.429 280 29 14 742 1005 698733021 698733293 1.160000e-49 207.0
4 TraesCS3A01G464200 chr3A 76.384 271 50 13 1919 2182 699516663 699516400 2.000000e-27 134.0
5 TraesCS3A01G464200 chr3A 93.333 45 1 2 230 272 712489882 712489838 7.390000e-07 65.8
6 TraesCS3A01G464200 chr3B 93.140 1720 101 8 997 2705 751751412 751753125 0.000000e+00 2507.0
7 TraesCS3A01G464200 chr3B 82.802 878 122 17 1082 1947 751760806 751761666 0.000000e+00 758.0
8 TraesCS3A01G464200 chr3B 82.588 850 129 13 1581 2415 751913712 751914557 0.000000e+00 732.0
9 TraesCS3A01G464200 chr3B 87.603 242 28 2 1942 2182 751778981 751779221 2.420000e-71 279.0
10 TraesCS3A01G464200 chr3B 78.014 423 82 7 1057 1475 751511301 751510886 4.080000e-64 255.0
11 TraesCS3A01G464200 chr3B 93.151 146 10 0 1052 1197 751840008 751840153 6.930000e-52 215.0
12 TraesCS3A01G464200 chr3B 74.820 278 55 13 98 369 744208981 744209249 9.360000e-21 111.0
13 TraesCS3A01G464200 chr3B 84.337 83 10 2 215 295 681958666 681958585 9.490000e-11 78.7
14 TraesCS3A01G464200 chr3D 91.768 1810 109 11 680 2475 564128087 564129870 0.000000e+00 2481.0
15 TraesCS3A01G464200 chr3D 85.884 1431 184 12 997 2415 564144323 564145747 0.000000e+00 1507.0
16 TraesCS3A01G464200 chr3D 92.800 250 15 2 2457 2705 564129890 564130137 3.030000e-95 359.0
17 TraesCS3A01G464200 chr3D 76.190 399 87 4 1078 1475 559580913 559580522 1.500000e-48 204.0
18 TraesCS3A01G464200 chr3D 74.691 324 76 6 1893 2213 564908958 564908638 4.290000e-29 139.0
19 TraesCS3A01G464200 chr3D 82.787 122 19 2 1921 2041 564890621 564890741 1.210000e-19 108.0
20 TraesCS3A01G464200 chr5A 97.881 472 10 0 2720 3191 211620542 211620071 0.000000e+00 817.0
21 TraesCS3A01G464200 chr5A 96.250 480 16 2 2714 3191 709217447 709217926 0.000000e+00 785.0
22 TraesCS3A01G464200 chr5A 96.042 480 18 1 2712 3191 616364986 616364508 0.000000e+00 780.0
23 TraesCS3A01G464200 chr5A 96.383 470 17 0 2722 3191 75364404 75363935 0.000000e+00 774.0
24 TraesCS3A01G464200 chr1A 97.040 473 14 0 2719 3191 570046201 570045729 0.000000e+00 797.0
25 TraesCS3A01G464200 chr1A 96.195 473 17 1 2719 3191 533315311 533315782 0.000000e+00 773.0
26 TraesCS3A01G464200 chr2A 96.406 473 16 1 2719 3191 768968646 768969117 0.000000e+00 778.0
27 TraesCS3A01G464200 chr2A 86.486 74 10 0 227 300 102749777 102749850 7.340000e-12 82.4
28 TraesCS3A01G464200 chrUn 96.195 473 18 0 2719 3191 1716743 1716271 0.000000e+00 774.0
29 TraesCS3A01G464200 chrUn 77.246 167 27 10 144 302 97364628 97364465 1.580000e-13 87.9
30 TraesCS3A01G464200 chr7A 91.791 134 10 1 2118 2250 701166250 701166117 5.440000e-43 185.0
31 TraesCS3A01G464200 chr1D 76.627 338 71 5 1079 1415 39996365 39996035 2.530000e-41 180.0
32 TraesCS3A01G464200 chr1D 77.401 177 33 7 113 285 22782310 22782483 7.280000e-17 99.0
33 TraesCS3A01G464200 chr1D 88.333 60 5 2 220 277 455110909 455110850 1.590000e-08 71.3
34 TraesCS3A01G464200 chr2D 78.322 143 24 6 139 277 55402969 55403108 5.670000e-13 86.1
35 TraesCS3A01G464200 chr5B 93.023 43 1 1 232 272 701389589 701389631 9.560000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G464200 chr3A 698709570 698712760 3190 False 5893 5893 100.0000 1 3191 1 chr3A.!!$F1 3190
1 TraesCS3A01G464200 chr3A 698733021 698734637 1616 False 848 1489 83.6415 742 2415 2 chr3A.!!$F3 1673
2 TraesCS3A01G464200 chr3B 751751412 751753125 1713 False 2507 2507 93.1400 997 2705 1 chr3B.!!$F2 1708
3 TraesCS3A01G464200 chr3B 751760806 751761666 860 False 758 758 82.8020 1082 1947 1 chr3B.!!$F3 865
4 TraesCS3A01G464200 chr3B 751913712 751914557 845 False 732 732 82.5880 1581 2415 1 chr3B.!!$F6 834
5 TraesCS3A01G464200 chr3D 564144323 564145747 1424 False 1507 1507 85.8840 997 2415 1 chr3D.!!$F1 1418
6 TraesCS3A01G464200 chr3D 564128087 564130137 2050 False 1420 2481 92.2840 680 2705 2 chr3D.!!$F3 2025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 552 2.052782 AGCACCGAAAGAAAACAGGT 57.947 45.0 0.0 0.0 35.24 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2312 0.397941 TCCTGCCTGGAACAAGTCAG 59.602 55.0 0.0 0.0 42.94 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 154 9.612620 AATCAAGTATTTGAAGAACATTCGAAC 57.387 29.630 0.00 0.00 45.82 3.95
154 155 8.148807 TCAAGTATTTGAAGAACATTCGAACA 57.851 30.769 0.00 0.00 40.26 3.18
155 156 8.616942 TCAAGTATTTGAAGAACATTCGAACAA 58.383 29.630 0.00 0.00 40.26 2.83
156 157 8.895845 CAAGTATTTGAAGAACATTCGAACAAG 58.104 33.333 0.00 0.00 36.36 3.16
157 158 8.154649 AGTATTTGAAGAACATTCGAACAAGT 57.845 30.769 0.00 0.00 0.00 3.16
158 159 9.268268 AGTATTTGAAGAACATTCGAACAAGTA 57.732 29.630 0.00 0.00 0.00 2.24
161 162 9.965824 ATTTGAAGAACATTCGAACAAGTATTT 57.034 25.926 0.00 0.00 0.00 1.40
192 193 9.912634 AATGTTGACAATGTATTAGGAAAACTG 57.087 29.630 0.00 0.00 0.00 3.16
193 194 8.458573 TGTTGACAATGTATTAGGAAAACTGT 57.541 30.769 0.00 0.00 0.00 3.55
194 195 8.908903 TGTTGACAATGTATTAGGAAAACTGTT 58.091 29.630 0.00 0.00 0.00 3.16
209 210 8.973182 AGGAAAACTGTTAAACTTGTATTTGGA 58.027 29.630 0.00 0.00 0.00 3.53
210 211 9.589111 GGAAAACTGTTAAACTTGTATTTGGAA 57.411 29.630 0.00 0.00 0.00 3.53
321 322 8.611654 ATGTTACAGGTGTATTAGAAAAACGT 57.388 30.769 0.00 0.00 0.00 3.99
322 323 8.436046 TGTTACAGGTGTATTAGAAAAACGTT 57.564 30.769 0.00 0.00 0.00 3.99
323 324 8.891720 TGTTACAGGTGTATTAGAAAAACGTTT 58.108 29.630 7.96 7.96 0.00 3.60
324 325 9.720667 GTTACAGGTGTATTAGAAAAACGTTTT 57.279 29.630 20.26 20.26 0.00 2.43
325 326 9.719279 TTACAGGTGTATTAGAAAAACGTTTTG 57.281 29.630 25.83 12.18 0.00 2.44
326 327 7.197703 ACAGGTGTATTAGAAAAACGTTTTGG 58.802 34.615 25.83 6.16 0.00 3.28
327 328 7.067251 ACAGGTGTATTAGAAAAACGTTTTGGA 59.933 33.333 25.83 11.95 0.00 3.53
328 329 7.377662 CAGGTGTATTAGAAAAACGTTTTGGAC 59.622 37.037 25.83 18.85 0.00 4.02
339 340 3.929417 CGTTTTGGACGTGTACAAGAA 57.071 42.857 16.00 0.00 46.49 2.52
340 341 4.261736 CGTTTTGGACGTGTACAAGAAA 57.738 40.909 16.00 3.17 46.49 2.52
341 342 4.839796 CGTTTTGGACGTGTACAAGAAAT 58.160 39.130 16.00 0.00 46.49 2.17
342 343 4.668837 CGTTTTGGACGTGTACAAGAAATG 59.331 41.667 16.00 7.07 46.49 2.32
343 344 5.575019 GTTTTGGACGTGTACAAGAAATGT 58.425 37.500 16.00 0.00 46.36 2.71
344 345 6.509837 CGTTTTGGACGTGTACAAGAAATGTA 60.510 38.462 16.00 0.00 46.49 2.29
345 346 6.533819 TTTGGACGTGTACAAGAAATGTAG 57.466 37.500 16.00 0.00 45.00 2.74
346 347 5.456548 TGGACGTGTACAAGAAATGTAGA 57.543 39.130 16.00 0.00 45.00 2.59
347 348 5.845103 TGGACGTGTACAAGAAATGTAGAA 58.155 37.500 16.00 0.00 45.00 2.10
348 349 6.282167 TGGACGTGTACAAGAAATGTAGAAA 58.718 36.000 16.00 0.00 45.00 2.52
349 350 6.932400 TGGACGTGTACAAGAAATGTAGAAAT 59.068 34.615 16.00 0.00 45.00 2.17
350 351 7.095397 TGGACGTGTACAAGAAATGTAGAAATG 60.095 37.037 16.00 0.00 45.00 2.32
351 352 7.117236 GGACGTGTACAAGAAATGTAGAAATGA 59.883 37.037 16.00 0.00 45.00 2.57
352 353 8.373048 ACGTGTACAAGAAATGTAGAAATGAA 57.627 30.769 16.00 0.00 45.00 2.57
353 354 8.832521 ACGTGTACAAGAAATGTAGAAATGAAA 58.167 29.630 16.00 0.00 45.00 2.69
354 355 9.103048 CGTGTACAAGAAATGTAGAAATGAAAC 57.897 33.333 2.23 0.00 45.00 2.78
355 356 9.394477 GTGTACAAGAAATGTAGAAATGAAACC 57.606 33.333 0.00 0.00 45.00 3.27
356 357 8.286800 TGTACAAGAAATGTAGAAATGAAACCG 58.713 33.333 0.00 0.00 45.00 4.44
357 358 7.504924 ACAAGAAATGTAGAAATGAAACCGA 57.495 32.000 0.00 0.00 41.63 4.69
358 359 7.584987 ACAAGAAATGTAGAAATGAAACCGAG 58.415 34.615 0.00 0.00 41.63 4.63
359 360 7.444183 ACAAGAAATGTAGAAATGAAACCGAGA 59.556 33.333 0.00 0.00 41.63 4.04
360 361 7.979444 AGAAATGTAGAAATGAAACCGAGAA 57.021 32.000 0.00 0.00 0.00 2.87
361 362 8.034058 AGAAATGTAGAAATGAAACCGAGAAG 57.966 34.615 0.00 0.00 0.00 2.85
362 363 7.878127 AGAAATGTAGAAATGAAACCGAGAAGA 59.122 33.333 0.00 0.00 0.00 2.87
363 364 7.979444 AATGTAGAAATGAAACCGAGAAGAA 57.021 32.000 0.00 0.00 0.00 2.52
364 365 7.979444 ATGTAGAAATGAAACCGAGAAGAAA 57.021 32.000 0.00 0.00 0.00 2.52
365 366 7.795482 TGTAGAAATGAAACCGAGAAGAAAA 57.205 32.000 0.00 0.00 0.00 2.29
366 367 8.215926 TGTAGAAATGAAACCGAGAAGAAAAA 57.784 30.769 0.00 0.00 0.00 1.94
391 392 9.528018 AAAACAATGAAAGCGAAAAGATAAAGA 57.472 25.926 0.00 0.00 0.00 2.52
392 393 9.528018 AAACAATGAAAGCGAAAAGATAAAGAA 57.472 25.926 0.00 0.00 0.00 2.52
393 394 9.528018 AACAATGAAAGCGAAAAGATAAAGAAA 57.472 25.926 0.00 0.00 0.00 2.52
394 395 9.528018 ACAATGAAAGCGAAAAGATAAAGAAAA 57.472 25.926 0.00 0.00 0.00 2.29
445 446 6.446659 AACCGAATAAAGAAATGCAAAACG 57.553 33.333 0.00 0.00 0.00 3.60
446 447 5.525199 ACCGAATAAAGAAATGCAAAACGT 58.475 33.333 0.00 0.00 0.00 3.99
447 448 6.670233 ACCGAATAAAGAAATGCAAAACGTA 58.330 32.000 0.00 0.00 0.00 3.57
448 449 7.309920 ACCGAATAAAGAAATGCAAAACGTAT 58.690 30.769 0.00 0.00 0.00 3.06
449 450 7.272515 ACCGAATAAAGAAATGCAAAACGTATG 59.727 33.333 0.00 0.00 0.00 2.39
450 451 7.253618 CCGAATAAAGAAATGCAAAACGTATGG 60.254 37.037 0.00 0.00 0.00 2.74
451 452 7.483375 CGAATAAAGAAATGCAAAACGTATGGA 59.517 33.333 0.00 0.00 0.00 3.41
452 453 9.134734 GAATAAAGAAATGCAAAACGTATGGAA 57.865 29.630 0.00 0.00 0.00 3.53
453 454 9.482627 AATAAAGAAATGCAAAACGTATGGAAA 57.517 25.926 0.00 0.00 0.00 3.13
454 455 7.778470 AAAGAAATGCAAAACGTATGGAAAA 57.222 28.000 0.00 0.00 0.00 2.29
455 456 6.763303 AGAAATGCAAAACGTATGGAAAAC 57.237 33.333 0.00 0.00 0.00 2.43
456 457 6.276847 AGAAATGCAAAACGTATGGAAAACA 58.723 32.000 0.00 0.00 0.00 2.83
457 458 6.420604 AGAAATGCAAAACGTATGGAAAACAG 59.579 34.615 0.00 0.00 0.00 3.16
458 459 4.902443 TGCAAAACGTATGGAAAACAGA 57.098 36.364 0.00 0.00 0.00 3.41
459 460 5.446143 TGCAAAACGTATGGAAAACAGAT 57.554 34.783 0.00 0.00 0.00 2.90
460 461 6.561737 TGCAAAACGTATGGAAAACAGATA 57.438 33.333 0.00 0.00 0.00 1.98
461 462 6.971602 TGCAAAACGTATGGAAAACAGATAA 58.028 32.000 0.00 0.00 0.00 1.75
462 463 7.426410 TGCAAAACGTATGGAAAACAGATAAA 58.574 30.769 0.00 0.00 0.00 1.40
463 464 7.593273 TGCAAAACGTATGGAAAACAGATAAAG 59.407 33.333 0.00 0.00 0.00 1.85
464 465 7.806014 GCAAAACGTATGGAAAACAGATAAAGA 59.194 33.333 0.00 0.00 0.00 2.52
465 466 9.672086 CAAAACGTATGGAAAACAGATAAAGAA 57.328 29.630 0.00 0.00 0.00 2.52
467 468 9.840427 AAACGTATGGAAAACAGATAAAGAATG 57.160 29.630 0.00 0.00 0.00 2.67
468 469 8.786826 ACGTATGGAAAACAGATAAAGAATGA 57.213 30.769 0.00 0.00 0.00 2.57
469 470 9.226606 ACGTATGGAAAACAGATAAAGAATGAA 57.773 29.630 0.00 0.00 0.00 2.57
497 498 8.614469 AAAAACATGAAAACCAAGAAAACTGA 57.386 26.923 0.00 0.00 0.00 3.41
498 499 8.614469 AAAACATGAAAACCAAGAAAACTGAA 57.386 26.923 0.00 0.00 0.00 3.02
499 500 7.832503 AACATGAAAACCAAGAAAACTGAAG 57.167 32.000 0.00 0.00 0.00 3.02
500 501 7.169158 ACATGAAAACCAAGAAAACTGAAGA 57.831 32.000 0.00 0.00 0.00 2.87
501 502 7.610865 ACATGAAAACCAAGAAAACTGAAGAA 58.389 30.769 0.00 0.00 0.00 2.52
502 503 8.093927 ACATGAAAACCAAGAAAACTGAAGAAA 58.906 29.630 0.00 0.00 0.00 2.52
503 504 8.934825 CATGAAAACCAAGAAAACTGAAGAAAA 58.065 29.630 0.00 0.00 0.00 2.29
504 505 8.894768 TGAAAACCAAGAAAACTGAAGAAAAA 57.105 26.923 0.00 0.00 0.00 1.94
505 506 8.769891 TGAAAACCAAGAAAACTGAAGAAAAAC 58.230 29.630 0.00 0.00 0.00 2.43
506 507 8.669946 AAAACCAAGAAAACTGAAGAAAAACA 57.330 26.923 0.00 0.00 0.00 2.83
507 508 8.669946 AAACCAAGAAAACTGAAGAAAAACAA 57.330 26.923 0.00 0.00 0.00 2.83
508 509 7.889589 ACCAAGAAAACTGAAGAAAAACAAG 57.110 32.000 0.00 0.00 0.00 3.16
509 510 7.666623 ACCAAGAAAACTGAAGAAAAACAAGA 58.333 30.769 0.00 0.00 0.00 3.02
510 511 8.147704 ACCAAGAAAACTGAAGAAAAACAAGAA 58.852 29.630 0.00 0.00 0.00 2.52
511 512 8.987890 CCAAGAAAACTGAAGAAAAACAAGAAA 58.012 29.630 0.00 0.00 0.00 2.52
545 546 5.576447 AAAAAGAGAAGCACCGAAAGAAA 57.424 34.783 0.00 0.00 0.00 2.52
546 547 5.576447 AAAAGAGAAGCACCGAAAGAAAA 57.424 34.783 0.00 0.00 0.00 2.29
547 548 4.553756 AAGAGAAGCACCGAAAGAAAAC 57.446 40.909 0.00 0.00 0.00 2.43
548 549 3.541632 AGAGAAGCACCGAAAGAAAACA 58.458 40.909 0.00 0.00 0.00 2.83
549 550 3.561725 AGAGAAGCACCGAAAGAAAACAG 59.438 43.478 0.00 0.00 0.00 3.16
550 551 2.618709 AGAAGCACCGAAAGAAAACAGG 59.381 45.455 0.00 0.00 0.00 4.00
551 552 2.052782 AGCACCGAAAGAAAACAGGT 57.947 45.000 0.00 0.00 35.24 4.00
557 558 4.740268 ACCGAAAGAAAACAGGTGAAAAC 58.260 39.130 0.00 0.00 33.37 2.43
558 559 4.218852 ACCGAAAGAAAACAGGTGAAAACA 59.781 37.500 0.00 0.00 33.37 2.83
559 560 5.164954 CCGAAAGAAAACAGGTGAAAACAA 58.835 37.500 0.00 0.00 0.00 2.83
560 561 5.635700 CCGAAAGAAAACAGGTGAAAACAAA 59.364 36.000 0.00 0.00 0.00 2.83
561 562 6.183360 CCGAAAGAAAACAGGTGAAAACAAAG 60.183 38.462 0.00 0.00 0.00 2.77
562 563 6.584563 CGAAAGAAAACAGGTGAAAACAAAGA 59.415 34.615 0.00 0.00 0.00 2.52
563 564 7.115663 CGAAAGAAAACAGGTGAAAACAAAGAA 59.884 33.333 0.00 0.00 0.00 2.52
564 565 7.889589 AAGAAAACAGGTGAAAACAAAGAAG 57.110 32.000 0.00 0.00 0.00 2.85
565 566 7.227049 AGAAAACAGGTGAAAACAAAGAAGA 57.773 32.000 0.00 0.00 0.00 2.87
566 567 7.666623 AGAAAACAGGTGAAAACAAAGAAGAA 58.333 30.769 0.00 0.00 0.00 2.52
567 568 7.814587 AGAAAACAGGTGAAAACAAAGAAGAAG 59.185 33.333 0.00 0.00 0.00 2.85
568 569 6.834168 AACAGGTGAAAACAAAGAAGAAGA 57.166 33.333 0.00 0.00 0.00 2.87
569 570 6.834168 ACAGGTGAAAACAAAGAAGAAGAA 57.166 33.333 0.00 0.00 0.00 2.52
570 571 7.227049 ACAGGTGAAAACAAAGAAGAAGAAA 57.773 32.000 0.00 0.00 0.00 2.52
571 572 7.666623 ACAGGTGAAAACAAAGAAGAAGAAAA 58.333 30.769 0.00 0.00 0.00 2.29
572 573 8.147704 ACAGGTGAAAACAAAGAAGAAGAAAAA 58.852 29.630 0.00 0.00 0.00 1.94
573 574 9.154847 CAGGTGAAAACAAAGAAGAAGAAAAAT 57.845 29.630 0.00 0.00 0.00 1.82
574 575 9.154847 AGGTGAAAACAAAGAAGAAGAAAAATG 57.845 29.630 0.00 0.00 0.00 2.32
575 576 9.150348 GGTGAAAACAAAGAAGAAGAAAAATGA 57.850 29.630 0.00 0.00 0.00 2.57
607 608 4.950205 AAACTAGTGAAACCCGAGAAGA 57.050 40.909 0.00 0.00 37.80 2.87
608 609 4.950205 AACTAGTGAAACCCGAGAAGAA 57.050 40.909 0.00 0.00 37.80 2.52
609 610 4.950205 ACTAGTGAAACCCGAGAAGAAA 57.050 40.909 0.00 0.00 37.80 2.52
610 611 4.884247 ACTAGTGAAACCCGAGAAGAAAG 58.116 43.478 0.00 0.00 37.80 2.62
611 612 3.127425 AGTGAAACCCGAGAAGAAAGG 57.873 47.619 0.00 0.00 37.80 3.11
612 613 2.704065 AGTGAAACCCGAGAAGAAAGGA 59.296 45.455 0.00 0.00 37.80 3.36
613 614 3.135895 AGTGAAACCCGAGAAGAAAGGAA 59.864 43.478 0.00 0.00 37.80 3.36
614 615 3.498777 GTGAAACCCGAGAAGAAAGGAAG 59.501 47.826 0.00 0.00 0.00 3.46
615 616 3.389983 TGAAACCCGAGAAGAAAGGAAGA 59.610 43.478 0.00 0.00 0.00 2.87
616 617 4.041691 TGAAACCCGAGAAGAAAGGAAGAT 59.958 41.667 0.00 0.00 0.00 2.40
617 618 5.247564 TGAAACCCGAGAAGAAAGGAAGATA 59.752 40.000 0.00 0.00 0.00 1.98
618 619 5.757099 AACCCGAGAAGAAAGGAAGATAA 57.243 39.130 0.00 0.00 0.00 1.75
619 620 5.757099 ACCCGAGAAGAAAGGAAGATAAA 57.243 39.130 0.00 0.00 0.00 1.40
620 621 6.314899 ACCCGAGAAGAAAGGAAGATAAAT 57.685 37.500 0.00 0.00 0.00 1.40
621 622 7.433537 ACCCGAGAAGAAAGGAAGATAAATA 57.566 36.000 0.00 0.00 0.00 1.40
622 623 8.035448 ACCCGAGAAGAAAGGAAGATAAATAT 57.965 34.615 0.00 0.00 0.00 1.28
623 624 8.495260 ACCCGAGAAGAAAGGAAGATAAATATT 58.505 33.333 0.00 0.00 0.00 1.28
624 625 9.998106 CCCGAGAAGAAAGGAAGATAAATATTA 57.002 33.333 0.00 0.00 0.00 0.98
839 850 5.707066 ATCCTCTTCTGCTTCTTTATGGT 57.293 39.130 0.00 0.00 0.00 3.55
917 934 3.413300 GTACGGGGGCAATGGGGA 61.413 66.667 0.00 0.00 0.00 4.81
971 988 2.356553 CGGCGTTGAGGTTCCGAA 60.357 61.111 0.00 0.00 44.23 4.30
999 1016 2.046217 GCCCCTGTTCTTCCGTCC 60.046 66.667 0.00 0.00 0.00 4.79
1037 1054 3.467119 CGTTGAGGTTCCGACGCG 61.467 66.667 3.53 3.53 37.16 6.01
1208 1226 1.957765 GCCACCGAAGACCCTAGGAC 61.958 65.000 11.48 3.94 0.00 3.85
1468 1486 2.203224 TCGTTTTCAAGGCGCCCA 60.203 55.556 26.15 4.07 0.00 5.36
1516 1534 3.535629 TTCTCCTGTGGCGGCACTG 62.536 63.158 37.33 35.04 0.00 3.66
1551 1569 1.081108 GCTCTGCGACTCAACTCGT 60.081 57.895 0.00 0.00 35.99 4.18
1646 1664 2.351276 GAAGGTGGTGGTCGGCAT 59.649 61.111 0.00 0.00 0.00 4.40
1647 1665 1.303317 GAAGGTGGTGGTCGGCATT 60.303 57.895 0.00 0.00 0.00 3.56
1668 1686 1.279271 GTCTACTCCAATGGTGCTGGT 59.721 52.381 0.00 0.00 35.30 4.00
1774 1798 0.814457 CTCTGTCGACCCTCTTGGAG 59.186 60.000 14.12 0.65 38.00 3.86
1849 1873 2.431454 TCACAATGGCATTAGAACGCA 58.569 42.857 13.23 0.00 0.00 5.24
2042 2069 3.854784 GCTTTCATCTGGAAGCACAACAC 60.855 47.826 16.61 0.00 36.72 3.32
2120 2147 1.004918 AGTTTGTCTTCTCCGGCCG 60.005 57.895 21.04 21.04 0.00 6.13
2194 2221 7.524912 CAGTAATTCTGAATTTGTCTGACAGG 58.475 38.462 19.68 5.27 46.27 4.00
2272 2312 1.111277 ACAGGTCTTTTGTGTTGCCC 58.889 50.000 0.00 0.00 0.00 5.36
2331 2385 4.822026 AGTGTAGTTTAGATCACCTGTGC 58.178 43.478 0.00 0.00 0.00 4.57
2363 2417 7.277981 TGAACTACTGTAAGCTGCTTAATTAGC 59.722 37.037 22.58 11.14 44.82 3.09
2396 2453 4.816385 CGACCTAATGCTACATCCATTGTT 59.184 41.667 0.00 0.00 39.87 2.83
2401 2458 7.231317 ACCTAATGCTACATCCATTGTTATTGG 59.769 37.037 0.00 0.00 39.87 3.16
2449 2509 2.843730 TGCCTCTTCCCTTGCATTACTA 59.156 45.455 0.00 0.00 0.00 1.82
2520 2618 1.416401 AGCCCGTTTTCTGAGTTCTCA 59.584 47.619 2.49 2.49 0.00 3.27
2536 2634 2.591923 TCTCACTCTGCTGTTCTCTGT 58.408 47.619 0.00 0.00 0.00 3.41
2551 2649 7.577616 GCTGTTCTCTGTTGGCCTTATTAATTT 60.578 37.037 3.32 0.00 0.00 1.82
2552 2650 8.189119 TGTTCTCTGTTGGCCTTATTAATTTT 57.811 30.769 3.32 0.00 0.00 1.82
2556 2654 8.522830 TCTCTGTTGGCCTTATTAATTTTTCAG 58.477 33.333 3.32 0.00 0.00 3.02
2578 2676 5.123820 CAGTGTCTTGTTCCAGTGAAGAAAA 59.876 40.000 0.00 0.00 33.81 2.29
2593 2691 9.853921 CAGTGAAGAAAAATGTTTTAGAATTGC 57.146 29.630 0.00 0.00 0.00 3.56
2594 2692 8.755018 AGTGAAGAAAAATGTTTTAGAATTGCG 58.245 29.630 0.00 0.00 0.00 4.85
2605 2703 1.741770 GAATTGCGCTCACCGGTCT 60.742 57.895 2.59 0.00 37.44 3.85
2681 2780 4.141574 TGTGTATGCTTCACCCCCTTATAC 60.142 45.833 0.00 0.00 35.25 1.47
2684 2783 6.013639 GTGTATGCTTCACCCCCTTATACTAT 60.014 42.308 0.00 0.00 0.00 2.12
2705 2804 5.679734 ATCTACTTGCTTTTGTGACACAG 57.320 39.130 8.55 0.00 0.00 3.66
2706 2805 4.513442 TCTACTTGCTTTTGTGACACAGT 58.487 39.130 8.55 4.15 0.00 3.55
2707 2806 3.764885 ACTTGCTTTTGTGACACAGTC 57.235 42.857 8.55 0.58 0.00 3.51
2708 2807 3.081061 ACTTGCTTTTGTGACACAGTCA 58.919 40.909 8.55 3.12 40.50 3.41
2715 2814 4.118480 TGACACAGTCACCGTTGC 57.882 55.556 0.00 0.00 37.67 4.17
2716 2815 1.520192 TGACACAGTCACCGTTGCT 59.480 52.632 0.00 0.00 37.67 3.91
2717 2816 0.747852 TGACACAGTCACCGTTGCTA 59.252 50.000 0.00 0.00 37.67 3.49
2718 2817 1.137513 GACACAGTCACCGTTGCTAC 58.862 55.000 0.00 0.00 32.09 3.58
2719 2818 0.750850 ACACAGTCACCGTTGCTACT 59.249 50.000 0.00 0.00 0.00 2.57
2720 2819 1.958579 ACACAGTCACCGTTGCTACTA 59.041 47.619 0.00 0.00 0.00 1.82
2721 2820 2.363038 ACACAGTCACCGTTGCTACTAA 59.637 45.455 0.00 0.00 0.00 2.24
2722 2821 2.987149 CACAGTCACCGTTGCTACTAAG 59.013 50.000 0.00 0.00 0.00 2.18
2723 2822 2.029290 ACAGTCACCGTTGCTACTAAGG 60.029 50.000 0.00 0.00 0.00 2.69
2724 2823 1.549170 AGTCACCGTTGCTACTAAGGG 59.451 52.381 0.00 0.00 40.50 3.95
2725 2824 0.248289 TCACCGTTGCTACTAAGGGC 59.752 55.000 0.00 0.00 38.76 5.19
2726 2825 0.036765 CACCGTTGCTACTAAGGGCA 60.037 55.000 0.00 0.00 38.76 5.36
2727 2826 0.909623 ACCGTTGCTACTAAGGGCAT 59.090 50.000 0.00 0.00 38.76 4.40
2728 2827 1.134491 ACCGTTGCTACTAAGGGCATC 60.134 52.381 0.00 0.00 38.76 3.91
2729 2828 1.139058 CCGTTGCTACTAAGGGCATCT 59.861 52.381 0.00 0.00 38.30 2.90
2730 2829 2.474816 CGTTGCTACTAAGGGCATCTC 58.525 52.381 0.00 0.00 38.30 2.75
2731 2830 2.803492 CGTTGCTACTAAGGGCATCTCC 60.803 54.545 0.00 0.00 38.30 3.71
2732 2831 2.170607 GTTGCTACTAAGGGCATCTCCA 59.829 50.000 0.00 0.00 38.30 3.86
2733 2832 2.042464 TGCTACTAAGGGCATCTCCAG 58.958 52.381 0.00 0.00 36.21 3.86
2734 2833 1.270571 GCTACTAAGGGCATCTCCAGC 60.271 57.143 0.00 0.00 36.21 4.85
2759 2858 3.415087 CCAGGAAGGCCTCCCCAG 61.415 72.222 22.02 15.58 46.81 4.45
2760 2859 3.415087 CAGGAAGGCCTCCCCAGG 61.415 72.222 22.02 12.25 46.81 4.45
2768 2867 4.764143 CCTCCCCAGGCGATTTTT 57.236 55.556 0.00 0.00 30.98 1.94
2801 2900 3.656045 AAAAACGGCCCAGTCGCG 61.656 61.111 0.00 0.00 32.11 5.87
2819 2918 3.480133 CCCCGAGGAGCCCGATTT 61.480 66.667 0.00 0.00 33.47 2.17
2820 2919 2.590092 CCCGAGGAGCCCGATTTT 59.410 61.111 0.00 0.00 0.00 1.82
2821 2920 1.523938 CCCGAGGAGCCCGATTTTC 60.524 63.158 0.00 0.00 0.00 2.29
2822 2921 1.883084 CCGAGGAGCCCGATTTTCG 60.883 63.158 0.00 0.00 40.07 3.46
2823 2922 2.526120 CGAGGAGCCCGATTTTCGC 61.526 63.158 0.00 0.00 38.82 4.70
2824 2923 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
2825 2924 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
2826 2925 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
2830 2929 3.876198 CCGATTTTCGCCGGCCTG 61.876 66.667 23.46 8.15 38.82 4.85
2831 2930 3.876198 CGATTTTCGCCGGCCTGG 61.876 66.667 23.46 7.26 42.50 4.45
2832 2931 3.518068 GATTTTCGCCGGCCTGGG 61.518 66.667 23.46 6.82 38.63 4.45
2843 2942 4.056125 GCCTGGGCCGAAAACAGC 62.056 66.667 0.00 0.00 34.56 4.40
2844 2943 3.737172 CCTGGGCCGAAAACAGCG 61.737 66.667 0.00 0.00 0.00 5.18
2845 2944 4.404654 CTGGGCCGAAAACAGCGC 62.405 66.667 0.00 0.00 41.90 5.92
2849 2948 4.736631 GCCGAAAACAGCGCCGAC 62.737 66.667 2.29 0.00 0.00 4.79
2850 2949 4.424430 CCGAAAACAGCGCCGACG 62.424 66.667 2.29 1.69 44.07 5.12
2851 2950 4.424430 CGAAAACAGCGCCGACGG 62.424 66.667 10.29 10.29 40.57 4.79
2852 2951 3.039588 GAAAACAGCGCCGACGGA 61.040 61.111 20.50 0.00 40.57 4.69
2853 2952 3.291167 GAAAACAGCGCCGACGGAC 62.291 63.158 20.50 8.83 40.57 4.79
2913 3012 1.281656 GGGACGAACTGTTTTGGCG 59.718 57.895 0.00 0.00 0.00 5.69
2914 3013 1.161563 GGGACGAACTGTTTTGGCGA 61.162 55.000 6.39 0.00 0.00 5.54
2915 3014 0.234884 GGACGAACTGTTTTGGCGAG 59.765 55.000 6.39 0.00 0.00 5.03
2916 3015 1.214367 GACGAACTGTTTTGGCGAGA 58.786 50.000 6.39 0.00 0.00 4.04
2917 3016 1.595794 GACGAACTGTTTTGGCGAGAA 59.404 47.619 6.39 0.00 0.00 2.87
2918 3017 2.011222 ACGAACTGTTTTGGCGAGAAA 58.989 42.857 6.39 0.00 0.00 2.52
2919 3018 2.223180 ACGAACTGTTTTGGCGAGAAAC 60.223 45.455 6.39 4.59 37.48 2.78
2920 3019 2.223157 CGAACTGTTTTGGCGAGAAACA 60.223 45.455 11.42 11.42 42.78 2.83
2922 3021 3.936585 TGTTTTGGCGAGAAACAGC 57.063 47.368 8.84 0.00 40.84 4.40
2960 3059 4.719369 GACACGGCGCCTCGTCTT 62.719 66.667 28.27 12.17 41.86 3.01
2961 3060 4.719369 ACACGGCGCCTCGTCTTC 62.719 66.667 26.68 0.00 41.86 2.87
2967 3066 3.702048 CGCCTCGTCTTCCCCCAA 61.702 66.667 0.00 0.00 0.00 4.12
2968 3067 2.046217 GCCTCGTCTTCCCCCAAC 60.046 66.667 0.00 0.00 0.00 3.77
2969 3068 2.264794 CCTCGTCTTCCCCCAACG 59.735 66.667 0.00 0.00 37.74 4.10
2970 3069 2.264794 CTCGTCTTCCCCCAACGG 59.735 66.667 0.00 0.00 37.05 4.44
2971 3070 3.952628 CTCGTCTTCCCCCAACGGC 62.953 68.421 0.00 0.00 37.05 5.68
2973 3072 3.647771 GTCTTCCCCCAACGGCCT 61.648 66.667 0.00 0.00 0.00 5.19
2974 3073 3.327404 TCTTCCCCCAACGGCCTC 61.327 66.667 0.00 0.00 0.00 4.70
2975 3074 4.778143 CTTCCCCCAACGGCCTCG 62.778 72.222 0.00 0.00 43.02 4.63
2997 3096 3.595758 CCGCGGGGAATCAATGCC 61.596 66.667 20.10 0.00 39.22 4.40
2998 3097 2.828095 CGCGGGGAATCAATGCCA 60.828 61.111 0.00 0.00 42.44 4.92
2999 3098 2.413963 CGCGGGGAATCAATGCCAA 61.414 57.895 0.00 0.00 42.44 4.52
3000 3099 1.438814 GCGGGGAATCAATGCCAAG 59.561 57.895 0.00 0.00 42.44 3.61
3001 3100 2.019897 GCGGGGAATCAATGCCAAGG 62.020 60.000 0.00 0.00 42.44 3.61
3002 3101 1.825341 GGGGAATCAATGCCAAGGC 59.175 57.895 3.61 3.61 42.44 4.35
3003 3102 0.688749 GGGGAATCAATGCCAAGGCT 60.689 55.000 12.96 0.00 42.44 4.58
3004 3103 0.462789 GGGAATCAATGCCAAGGCTG 59.537 55.000 12.96 3.28 39.85 4.85
3005 3104 0.179092 GGAATCAATGCCAAGGCTGC 60.179 55.000 12.96 0.00 42.51 5.25
3006 3105 0.179092 GAATCAATGCCAAGGCTGCC 60.179 55.000 11.65 11.65 42.51 4.85
3007 3106 1.952102 AATCAATGCCAAGGCTGCCG 61.952 55.000 13.96 0.00 42.51 5.69
3008 3107 4.807039 CAATGCCAAGGCTGCCGC 62.807 66.667 13.96 11.58 42.51 6.53
3025 3124 2.361610 CCGGTCAGCCTTGCCATT 60.362 61.111 0.00 0.00 0.00 3.16
3026 3125 2.703798 CCGGTCAGCCTTGCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
3027 3126 1.675310 CGGTCAGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
3028 3127 1.033746 CGGTCAGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
3029 3128 1.188863 GGTCAGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
3030 3129 1.135721 GGTCAGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
3031 3130 1.135721 GTCAGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
3032 3131 1.006281 TCAGCCTTGCCATTGATTCCT 59.994 47.619 0.00 0.00 0.00 3.36
3033 3132 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
3034 3133 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
3035 3134 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
3036 3135 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
3037 3136 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
3038 3137 0.394216 TGCCATTGATTCCTCACGGG 60.394 55.000 0.00 0.00 0.00 5.28
3039 3138 1.728490 GCCATTGATTCCTCACGGGC 61.728 60.000 0.00 0.00 41.19 6.13
3040 3139 1.439353 CCATTGATTCCTCACGGGCG 61.439 60.000 0.00 0.00 34.39 6.13
3041 3140 1.153168 ATTGATTCCTCACGGGCGG 60.153 57.895 0.00 0.00 34.39 6.13
3042 3141 3.969250 TTGATTCCTCACGGGCGGC 62.969 63.158 0.00 0.00 34.39 6.53
3089 3188 4.849329 CCTCCCTCGCACGCGTAC 62.849 72.222 13.44 5.01 40.74 3.67
3090 3189 4.111016 CTCCCTCGCACGCGTACA 62.111 66.667 13.44 0.00 40.74 2.90
3091 3190 4.409218 TCCCTCGCACGCGTACAC 62.409 66.667 13.44 3.32 40.74 2.90
3092 3191 4.710695 CCCTCGCACGCGTACACA 62.711 66.667 13.44 0.00 40.74 3.72
3093 3192 3.467119 CCTCGCACGCGTACACAC 61.467 66.667 13.44 0.00 40.74 3.82
3113 3212 2.126228 GTGCGGCGCGGCTATATA 60.126 61.111 35.00 16.23 0.00 0.86
3114 3213 2.158959 GTGCGGCGCGGCTATATAG 61.159 63.158 35.00 14.72 0.00 1.31
3143 3242 4.624364 CACTCGCCTGTGCCCACA 62.624 66.667 0.71 0.71 39.32 4.17
3182 3281 3.160748 GCCCAGCTCCTCCCTCTC 61.161 72.222 0.00 0.00 0.00 3.20
3183 3282 2.445654 CCCAGCTCCTCCCTCTCC 60.446 72.222 0.00 0.00 0.00 3.71
3184 3283 2.445654 CCAGCTCCTCCCTCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
3185 3284 2.695597 CAGCTCCTCCCTCTCCCT 59.304 66.667 0.00 0.00 0.00 4.20
3186 3285 1.660019 CCAGCTCCTCCCTCTCCCTA 61.660 65.000 0.00 0.00 0.00 3.53
3187 3286 0.469144 CAGCTCCTCCCTCTCCCTAC 60.469 65.000 0.00 0.00 0.00 3.18
3188 3287 1.152419 GCTCCTCCCTCTCCCTACC 60.152 68.421 0.00 0.00 0.00 3.18
3189 3288 1.661004 GCTCCTCCCTCTCCCTACCT 61.661 65.000 0.00 0.00 0.00 3.08
3190 3289 0.481128 CTCCTCCCTCTCCCTACCTC 59.519 65.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.612620 GTTCGAATGTTCTTCAAATACTTGATT 57.387 29.630 0.00 0.00 41.22 2.57
128 129 8.783093 TGTTCGAATGTTCTTCAAATACTTGAT 58.217 29.630 0.00 0.00 41.22 2.57
129 130 8.148807 TGTTCGAATGTTCTTCAAATACTTGA 57.851 30.769 0.00 0.00 39.87 3.02
130 131 8.781067 TTGTTCGAATGTTCTTCAAATACTTG 57.219 30.769 0.00 0.00 0.00 3.16
131 132 8.621286 ACTTGTTCGAATGTTCTTCAAATACTT 58.379 29.630 0.00 0.00 0.00 2.24
132 133 8.154649 ACTTGTTCGAATGTTCTTCAAATACT 57.845 30.769 0.00 0.00 0.00 2.12
135 136 9.965824 AAATACTTGTTCGAATGTTCTTCAAAT 57.034 25.926 0.00 0.00 0.00 2.32
166 167 9.912634 CAGTTTTCCTAATACATTGTCAACATT 57.087 29.630 0.00 0.00 0.00 2.71
167 168 9.077885 ACAGTTTTCCTAATACATTGTCAACAT 57.922 29.630 0.00 0.00 0.00 2.71
168 169 8.458573 ACAGTTTTCCTAATACATTGTCAACA 57.541 30.769 0.00 0.00 0.00 3.33
183 184 8.973182 TCCAAATACAAGTTTAACAGTTTTCCT 58.027 29.630 0.00 0.00 0.00 3.36
184 185 9.589111 TTCCAAATACAAGTTTAACAGTTTTCC 57.411 29.630 0.00 0.00 0.00 3.13
295 296 9.709495 ACGTTTTTCTAATACACCTGTAACATA 57.291 29.630 0.00 0.00 33.76 2.29
296 297 8.611654 ACGTTTTTCTAATACACCTGTAACAT 57.388 30.769 0.00 0.00 33.76 2.71
297 298 8.436046 AACGTTTTTCTAATACACCTGTAACA 57.564 30.769 0.00 0.00 33.76 2.41
298 299 9.720667 AAAACGTTTTTCTAATACACCTGTAAC 57.279 29.630 20.26 0.00 33.76 2.50
299 300 9.719279 CAAAACGTTTTTCTAATACACCTGTAA 57.281 29.630 23.14 0.00 33.76 2.41
300 301 8.344098 CCAAAACGTTTTTCTAATACACCTGTA 58.656 33.333 23.14 0.00 34.67 2.74
301 302 7.067251 TCCAAAACGTTTTTCTAATACACCTGT 59.933 33.333 23.14 0.00 0.00 4.00
302 303 7.377662 GTCCAAAACGTTTTTCTAATACACCTG 59.622 37.037 23.14 8.34 0.00 4.00
303 304 7.420002 GTCCAAAACGTTTTTCTAATACACCT 58.580 34.615 23.14 0.00 0.00 4.00
304 305 6.357766 CGTCCAAAACGTTTTTCTAATACACC 59.642 38.462 23.14 2.77 46.42 4.16
305 306 7.299053 CGTCCAAAACGTTTTTCTAATACAC 57.701 36.000 23.14 9.84 46.42 2.90
319 320 5.728344 ACATTTCTTGTACACGTCCAAAACG 60.728 40.000 0.00 0.00 46.81 3.60
320 321 5.575019 ACATTTCTTGTACACGTCCAAAAC 58.425 37.500 0.00 0.00 36.57 2.43
321 322 5.821516 ACATTTCTTGTACACGTCCAAAA 57.178 34.783 0.00 0.00 36.57 2.44
322 323 6.282167 TCTACATTTCTTGTACACGTCCAAA 58.718 36.000 0.00 0.00 39.87 3.28
323 324 5.845103 TCTACATTTCTTGTACACGTCCAA 58.155 37.500 0.00 0.00 39.87 3.53
324 325 5.456548 TCTACATTTCTTGTACACGTCCA 57.543 39.130 0.00 0.00 39.87 4.02
325 326 6.774354 TTTCTACATTTCTTGTACACGTCC 57.226 37.500 0.00 0.00 39.87 4.79
326 327 8.014322 TCATTTCTACATTTCTTGTACACGTC 57.986 34.615 0.00 0.00 39.87 4.34
327 328 7.956420 TCATTTCTACATTTCTTGTACACGT 57.044 32.000 0.00 0.00 39.87 4.49
328 329 9.103048 GTTTCATTTCTACATTTCTTGTACACG 57.897 33.333 0.00 0.00 39.87 4.49
329 330 9.394477 GGTTTCATTTCTACATTTCTTGTACAC 57.606 33.333 0.00 0.00 39.87 2.90
330 331 8.286800 CGGTTTCATTTCTACATTTCTTGTACA 58.713 33.333 0.00 0.00 39.87 2.90
331 332 8.500773 TCGGTTTCATTTCTACATTTCTTGTAC 58.499 33.333 0.00 0.00 39.87 2.90
332 333 8.610248 TCGGTTTCATTTCTACATTTCTTGTA 57.390 30.769 0.00 0.00 39.87 2.41
333 334 7.444183 TCTCGGTTTCATTTCTACATTTCTTGT 59.556 33.333 0.00 0.00 42.62 3.16
334 335 7.806690 TCTCGGTTTCATTTCTACATTTCTTG 58.193 34.615 0.00 0.00 0.00 3.02
335 336 7.979444 TCTCGGTTTCATTTCTACATTTCTT 57.021 32.000 0.00 0.00 0.00 2.52
336 337 7.878127 TCTTCTCGGTTTCATTTCTACATTTCT 59.122 33.333 0.00 0.00 0.00 2.52
337 338 8.029642 TCTTCTCGGTTTCATTTCTACATTTC 57.970 34.615 0.00 0.00 0.00 2.17
338 339 7.979444 TCTTCTCGGTTTCATTTCTACATTT 57.021 32.000 0.00 0.00 0.00 2.32
339 340 7.979444 TTCTTCTCGGTTTCATTTCTACATT 57.021 32.000 0.00 0.00 0.00 2.71
340 341 7.979444 TTTCTTCTCGGTTTCATTTCTACAT 57.021 32.000 0.00 0.00 0.00 2.29
341 342 7.795482 TTTTCTTCTCGGTTTCATTTCTACA 57.205 32.000 0.00 0.00 0.00 2.74
365 366 9.528018 TCTTTATCTTTTCGCTTTCATTGTTTT 57.472 25.926 0.00 0.00 0.00 2.43
366 367 9.528018 TTCTTTATCTTTTCGCTTTCATTGTTT 57.472 25.926 0.00 0.00 0.00 2.83
367 368 9.528018 TTTCTTTATCTTTTCGCTTTCATTGTT 57.472 25.926 0.00 0.00 0.00 2.83
368 369 9.528018 TTTTCTTTATCTTTTCGCTTTCATTGT 57.472 25.926 0.00 0.00 0.00 2.71
419 420 8.480853 CGTTTTGCATTTCTTTATTCGGTTTTA 58.519 29.630 0.00 0.00 0.00 1.52
420 421 7.010645 ACGTTTTGCATTTCTTTATTCGGTTTT 59.989 29.630 0.00 0.00 0.00 2.43
421 422 6.477360 ACGTTTTGCATTTCTTTATTCGGTTT 59.523 30.769 0.00 0.00 0.00 3.27
422 423 5.980715 ACGTTTTGCATTTCTTTATTCGGTT 59.019 32.000 0.00 0.00 0.00 4.44
423 424 5.525199 ACGTTTTGCATTTCTTTATTCGGT 58.475 33.333 0.00 0.00 0.00 4.69
424 425 7.253618 CCATACGTTTTGCATTTCTTTATTCGG 60.254 37.037 0.00 0.00 0.00 4.30
425 426 7.483375 TCCATACGTTTTGCATTTCTTTATTCG 59.517 33.333 0.00 0.00 0.00 3.34
426 427 8.682128 TCCATACGTTTTGCATTTCTTTATTC 57.318 30.769 0.00 0.00 0.00 1.75
427 428 9.482627 TTTCCATACGTTTTGCATTTCTTTATT 57.517 25.926 0.00 0.00 0.00 1.40
428 429 9.482627 TTTTCCATACGTTTTGCATTTCTTTAT 57.517 25.926 0.00 0.00 0.00 1.40
429 430 8.756864 GTTTTCCATACGTTTTGCATTTCTTTA 58.243 29.630 0.00 0.00 0.00 1.85
430 431 7.278868 TGTTTTCCATACGTTTTGCATTTCTTT 59.721 29.630 0.00 0.00 0.00 2.52
431 432 6.758886 TGTTTTCCATACGTTTTGCATTTCTT 59.241 30.769 0.00 0.00 0.00 2.52
432 433 6.276847 TGTTTTCCATACGTTTTGCATTTCT 58.723 32.000 0.00 0.00 0.00 2.52
433 434 6.419413 TCTGTTTTCCATACGTTTTGCATTTC 59.581 34.615 0.00 0.00 0.00 2.17
434 435 6.276847 TCTGTTTTCCATACGTTTTGCATTT 58.723 32.000 0.00 0.00 0.00 2.32
435 436 5.837437 TCTGTTTTCCATACGTTTTGCATT 58.163 33.333 0.00 0.00 0.00 3.56
436 437 5.446143 TCTGTTTTCCATACGTTTTGCAT 57.554 34.783 0.00 0.00 0.00 3.96
437 438 4.902443 TCTGTTTTCCATACGTTTTGCA 57.098 36.364 0.00 0.00 0.00 4.08
438 439 7.806014 TCTTTATCTGTTTTCCATACGTTTTGC 59.194 33.333 0.00 0.00 0.00 3.68
439 440 9.672086 TTCTTTATCTGTTTTCCATACGTTTTG 57.328 29.630 0.00 0.00 0.00 2.44
441 442 9.840427 CATTCTTTATCTGTTTTCCATACGTTT 57.160 29.630 0.00 0.00 0.00 3.60
442 443 9.226606 TCATTCTTTATCTGTTTTCCATACGTT 57.773 29.630 0.00 0.00 0.00 3.99
443 444 8.786826 TCATTCTTTATCTGTTTTCCATACGT 57.213 30.769 0.00 0.00 0.00 3.57
472 473 8.614469 TCAGTTTTCTTGGTTTTCATGTTTTT 57.386 26.923 0.00 0.00 0.00 1.94
473 474 8.614469 TTCAGTTTTCTTGGTTTTCATGTTTT 57.386 26.923 0.00 0.00 0.00 2.43
474 475 8.093927 TCTTCAGTTTTCTTGGTTTTCATGTTT 58.906 29.630 0.00 0.00 0.00 2.83
475 476 7.610865 TCTTCAGTTTTCTTGGTTTTCATGTT 58.389 30.769 0.00 0.00 0.00 2.71
476 477 7.169158 TCTTCAGTTTTCTTGGTTTTCATGT 57.831 32.000 0.00 0.00 0.00 3.21
477 478 8.477984 TTTCTTCAGTTTTCTTGGTTTTCATG 57.522 30.769 0.00 0.00 0.00 3.07
478 479 9.500785 TTTTTCTTCAGTTTTCTTGGTTTTCAT 57.499 25.926 0.00 0.00 0.00 2.57
479 480 8.769891 GTTTTTCTTCAGTTTTCTTGGTTTTCA 58.230 29.630 0.00 0.00 0.00 2.69
480 481 8.769891 TGTTTTTCTTCAGTTTTCTTGGTTTTC 58.230 29.630 0.00 0.00 0.00 2.29
481 482 8.669946 TGTTTTTCTTCAGTTTTCTTGGTTTT 57.330 26.923 0.00 0.00 0.00 2.43
482 483 8.669946 TTGTTTTTCTTCAGTTTTCTTGGTTT 57.330 26.923 0.00 0.00 0.00 3.27
483 484 8.147704 TCTTGTTTTTCTTCAGTTTTCTTGGTT 58.852 29.630 0.00 0.00 0.00 3.67
484 485 7.666623 TCTTGTTTTTCTTCAGTTTTCTTGGT 58.333 30.769 0.00 0.00 0.00 3.67
485 486 8.532977 TTCTTGTTTTTCTTCAGTTTTCTTGG 57.467 30.769 0.00 0.00 0.00 3.61
523 524 5.576447 TTTCTTTCGGTGCTTCTCTTTTT 57.424 34.783 0.00 0.00 0.00 1.94
524 525 5.105917 TGTTTTCTTTCGGTGCTTCTCTTTT 60.106 36.000 0.00 0.00 0.00 2.27
525 526 4.398044 TGTTTTCTTTCGGTGCTTCTCTTT 59.602 37.500 0.00 0.00 0.00 2.52
526 527 3.945285 TGTTTTCTTTCGGTGCTTCTCTT 59.055 39.130 0.00 0.00 0.00 2.85
527 528 3.541632 TGTTTTCTTTCGGTGCTTCTCT 58.458 40.909 0.00 0.00 0.00 3.10
528 529 3.304057 CCTGTTTTCTTTCGGTGCTTCTC 60.304 47.826 0.00 0.00 0.00 2.87
529 530 2.618709 CCTGTTTTCTTTCGGTGCTTCT 59.381 45.455 0.00 0.00 0.00 2.85
530 531 2.357952 ACCTGTTTTCTTTCGGTGCTTC 59.642 45.455 0.00 0.00 0.00 3.86
531 532 2.099098 CACCTGTTTTCTTTCGGTGCTT 59.901 45.455 0.00 0.00 38.72 3.91
532 533 1.676006 CACCTGTTTTCTTTCGGTGCT 59.324 47.619 0.00 0.00 38.72 4.40
533 534 1.673920 TCACCTGTTTTCTTTCGGTGC 59.326 47.619 0.00 0.00 43.62 5.01
534 535 4.364415 TTTCACCTGTTTTCTTTCGGTG 57.636 40.909 0.00 0.00 44.92 4.94
535 536 4.218852 TGTTTTCACCTGTTTTCTTTCGGT 59.781 37.500 0.00 0.00 0.00 4.69
536 537 4.739195 TGTTTTCACCTGTTTTCTTTCGG 58.261 39.130 0.00 0.00 0.00 4.30
537 538 6.584563 TCTTTGTTTTCACCTGTTTTCTTTCG 59.415 34.615 0.00 0.00 0.00 3.46
538 539 7.883229 TCTTTGTTTTCACCTGTTTTCTTTC 57.117 32.000 0.00 0.00 0.00 2.62
539 540 8.147704 TCTTCTTTGTTTTCACCTGTTTTCTTT 58.852 29.630 0.00 0.00 0.00 2.52
540 541 7.666623 TCTTCTTTGTTTTCACCTGTTTTCTT 58.333 30.769 0.00 0.00 0.00 2.52
541 542 7.227049 TCTTCTTTGTTTTCACCTGTTTTCT 57.773 32.000 0.00 0.00 0.00 2.52
542 543 7.812669 TCTTCTTCTTTGTTTTCACCTGTTTTC 59.187 33.333 0.00 0.00 0.00 2.29
543 544 7.666623 TCTTCTTCTTTGTTTTCACCTGTTTT 58.333 30.769 0.00 0.00 0.00 2.43
544 545 7.227049 TCTTCTTCTTTGTTTTCACCTGTTT 57.773 32.000 0.00 0.00 0.00 2.83
545 546 6.834168 TCTTCTTCTTTGTTTTCACCTGTT 57.166 33.333 0.00 0.00 0.00 3.16
546 547 6.834168 TTCTTCTTCTTTGTTTTCACCTGT 57.166 33.333 0.00 0.00 0.00 4.00
547 548 8.532977 TTTTTCTTCTTCTTTGTTTTCACCTG 57.467 30.769 0.00 0.00 0.00 4.00
548 549 9.154847 CATTTTTCTTCTTCTTTGTTTTCACCT 57.845 29.630 0.00 0.00 0.00 4.00
549 550 9.150348 TCATTTTTCTTCTTCTTTGTTTTCACC 57.850 29.630 0.00 0.00 0.00 4.02
584 585 5.677567 TCTTCTCGGGTTTCACTAGTTTTT 58.322 37.500 0.00 0.00 0.00 1.94
585 586 5.286267 TCTTCTCGGGTTTCACTAGTTTT 57.714 39.130 0.00 0.00 0.00 2.43
586 587 4.950205 TCTTCTCGGGTTTCACTAGTTT 57.050 40.909 0.00 0.00 0.00 2.66
587 588 4.950205 TTCTTCTCGGGTTTCACTAGTT 57.050 40.909 0.00 0.00 0.00 2.24
588 589 4.262506 CCTTTCTTCTCGGGTTTCACTAGT 60.263 45.833 0.00 0.00 0.00 2.57
589 590 4.021368 TCCTTTCTTCTCGGGTTTCACTAG 60.021 45.833 0.00 0.00 0.00 2.57
590 591 3.899360 TCCTTTCTTCTCGGGTTTCACTA 59.101 43.478 0.00 0.00 0.00 2.74
591 592 2.704065 TCCTTTCTTCTCGGGTTTCACT 59.296 45.455 0.00 0.00 0.00 3.41
592 593 3.121738 TCCTTTCTTCTCGGGTTTCAC 57.878 47.619 0.00 0.00 0.00 3.18
593 594 3.389983 TCTTCCTTTCTTCTCGGGTTTCA 59.610 43.478 0.00 0.00 0.00 2.69
594 595 4.004196 TCTTCCTTTCTTCTCGGGTTTC 57.996 45.455 0.00 0.00 0.00 2.78
595 596 4.642466 ATCTTCCTTTCTTCTCGGGTTT 57.358 40.909 0.00 0.00 0.00 3.27
596 597 5.757099 TTATCTTCCTTTCTTCTCGGGTT 57.243 39.130 0.00 0.00 0.00 4.11
597 598 5.757099 TTTATCTTCCTTTCTTCTCGGGT 57.243 39.130 0.00 0.00 0.00 5.28
598 599 8.910351 AATATTTATCTTCCTTTCTTCTCGGG 57.090 34.615 0.00 0.00 0.00 5.14
658 659 6.206498 GTGTTCGCTGGTTTTCTAGATTTTT 58.794 36.000 0.00 0.00 0.00 1.94
659 660 5.560183 CGTGTTCGCTGGTTTTCTAGATTTT 60.560 40.000 0.00 0.00 0.00 1.82
660 661 4.084013 CGTGTTCGCTGGTTTTCTAGATTT 60.084 41.667 0.00 0.00 0.00 2.17
661 662 3.432252 CGTGTTCGCTGGTTTTCTAGATT 59.568 43.478 0.00 0.00 0.00 2.40
662 663 2.993899 CGTGTTCGCTGGTTTTCTAGAT 59.006 45.455 0.00 0.00 0.00 1.98
663 664 2.223876 ACGTGTTCGCTGGTTTTCTAGA 60.224 45.455 0.00 0.00 41.18 2.43
664 665 2.096909 CACGTGTTCGCTGGTTTTCTAG 60.097 50.000 7.58 0.00 41.18 2.43
665 666 1.862201 CACGTGTTCGCTGGTTTTCTA 59.138 47.619 7.58 0.00 41.18 2.10
666 667 0.655733 CACGTGTTCGCTGGTTTTCT 59.344 50.000 7.58 0.00 41.18 2.52
667 668 0.928451 GCACGTGTTCGCTGGTTTTC 60.928 55.000 18.38 0.00 41.18 2.29
668 669 1.063488 GCACGTGTTCGCTGGTTTT 59.937 52.632 18.38 0.00 41.18 2.43
669 670 2.713154 GCACGTGTTCGCTGGTTT 59.287 55.556 18.38 0.00 41.18 3.27
670 671 3.636043 CGCACGTGTTCGCTGGTT 61.636 61.111 18.38 0.00 41.18 3.67
677 678 3.615562 GAGAAGCGCGCACGTGTTC 62.616 63.158 35.10 25.97 42.83 3.18
678 679 3.702555 GAGAAGCGCGCACGTGTT 61.703 61.111 35.10 18.81 42.83 3.32
693 694 0.537653 GGTTCCGGGGAGAAGAAGAG 59.462 60.000 0.00 0.00 0.00 2.85
836 847 3.907474 TGAAAGGTAGACAATCTCCACCA 59.093 43.478 1.61 0.00 29.49 4.17
839 850 5.825593 ACTTGAAAGGTAGACAATCTCCA 57.174 39.130 0.00 0.00 0.00 3.86
917 934 4.013702 CCTCAGCTGGCTGCAAAT 57.986 55.556 18.84 0.00 45.94 2.32
1231 1249 0.754217 ACTATCCAGAAGCGCGGGTA 60.754 55.000 8.83 0.00 33.11 3.69
1516 1534 2.476051 CACGGTGAGATTGTGCGC 59.524 61.111 0.74 0.00 0.00 6.09
1618 1636 5.308825 GACCACCACCTTCCTCATATAATG 58.691 45.833 0.00 0.00 0.00 1.90
1646 1664 2.290260 CCAGCACCATTGGAGTAGACAA 60.290 50.000 10.37 0.00 37.96 3.18
1647 1665 1.278985 CCAGCACCATTGGAGTAGACA 59.721 52.381 10.37 0.00 37.96 3.41
1668 1686 3.673956 CTGCGCCACGGATACCCAA 62.674 63.158 4.18 0.00 0.00 4.12
1774 1798 1.443872 AACGGACGTCGCTGTGATC 60.444 57.895 9.92 0.00 43.89 2.92
1849 1873 2.475466 CCATGCCGAGAAGCGCAAT 61.475 57.895 11.47 0.00 39.11 3.56
1895 1922 1.003355 CTGCCCACGGTCTTCACAT 60.003 57.895 0.00 0.00 0.00 3.21
2042 2069 2.100584 CTCTCGTCTTTCCCATCTCTGG 59.899 54.545 0.00 0.00 42.73 3.86
2120 2147 1.017387 GATGATGGTGAAAGGACGGC 58.983 55.000 0.00 0.00 0.00 5.68
2184 2211 2.525368 TCCGAGATTTCCTGTCAGACA 58.475 47.619 2.48 2.48 0.00 3.41
2191 2218 1.432270 GCGCCTTCCGAGATTTCCTG 61.432 60.000 0.00 0.00 40.02 3.86
2194 2221 3.410958 GGCGCCTTCCGAGATTTC 58.589 61.111 22.15 0.00 40.02 2.17
2272 2312 0.397941 TCCTGCCTGGAACAAGTCAG 59.602 55.000 0.00 0.00 42.94 3.51
2331 2385 4.331168 GCAGCTTACAGTAGTTCATTCCAG 59.669 45.833 0.00 0.00 0.00 3.86
2396 2453 7.069950 ACACAGAGACAATAGATAGCACCAATA 59.930 37.037 0.00 0.00 0.00 1.90
2401 2458 4.505922 GCACACAGAGACAATAGATAGCAC 59.494 45.833 0.00 0.00 0.00 4.40
2449 2509 4.281688 ACAAACCAGATTGCATTGCTAAGT 59.718 37.500 10.49 0.00 33.52 2.24
2520 2618 1.542108 GCCAACAGAGAACAGCAGAGT 60.542 52.381 0.00 0.00 0.00 3.24
2526 2624 7.396540 AATTAATAAGGCCAACAGAGAACAG 57.603 36.000 5.01 0.00 0.00 3.16
2536 2634 8.189119 AGACACTGAAAAATTAATAAGGCCAA 57.811 30.769 5.01 0.00 0.00 4.52
2551 2649 4.214986 TCACTGGAACAAGACACTGAAA 57.785 40.909 0.00 0.00 38.70 2.69
2552 2650 3.904800 TCACTGGAACAAGACACTGAA 57.095 42.857 0.00 0.00 38.70 3.02
2556 2654 5.560966 TTTTCTTCACTGGAACAAGACAC 57.439 39.130 0.00 0.00 38.70 3.67
2578 2676 4.485163 GGTGAGCGCAATTCTAAAACATT 58.515 39.130 11.47 0.00 0.00 2.71
2593 2691 1.734477 CACAGAAGACCGGTGAGCG 60.734 63.158 14.63 0.00 42.45 5.03
2594 2692 1.374758 CCACAGAAGACCGGTGAGC 60.375 63.158 14.63 0.00 42.45 4.26
2605 2703 4.398988 GGCATCATGTTATGTTCCACAGAA 59.601 41.667 0.00 0.00 0.00 3.02
2681 2780 6.425114 ACTGTGTCACAAAAGCAAGTAGATAG 59.575 38.462 7.18 0.00 0.00 2.08
2684 2783 4.513442 ACTGTGTCACAAAAGCAAGTAGA 58.487 39.130 7.18 0.00 0.00 2.59
2705 2804 2.005560 GCCCTTAGTAGCAACGGTGAC 61.006 57.143 3.55 0.00 0.00 3.67
2706 2805 0.248289 GCCCTTAGTAGCAACGGTGA 59.752 55.000 3.55 0.00 0.00 4.02
2707 2806 0.036765 TGCCCTTAGTAGCAACGGTG 60.037 55.000 0.00 0.00 35.69 4.94
2708 2807 0.909623 ATGCCCTTAGTAGCAACGGT 59.090 50.000 0.00 0.00 43.36 4.83
2709 2808 1.139058 AGATGCCCTTAGTAGCAACGG 59.861 52.381 0.00 0.00 43.36 4.44
2710 2809 2.474816 GAGATGCCCTTAGTAGCAACG 58.525 52.381 0.00 0.00 43.36 4.10
2711 2810 2.170607 TGGAGATGCCCTTAGTAGCAAC 59.829 50.000 0.00 0.00 43.36 4.17
2712 2811 2.435805 CTGGAGATGCCCTTAGTAGCAA 59.564 50.000 0.00 0.00 43.36 3.91
2713 2812 2.042464 CTGGAGATGCCCTTAGTAGCA 58.958 52.381 0.00 0.00 44.45 3.49
2714 2813 1.270571 GCTGGAGATGCCCTTAGTAGC 60.271 57.143 0.00 0.00 34.97 3.58
2715 2814 1.346068 GGCTGGAGATGCCCTTAGTAG 59.654 57.143 0.00 0.00 44.32 2.57
2716 2815 1.424638 GGCTGGAGATGCCCTTAGTA 58.575 55.000 0.00 0.00 44.32 1.82
2717 2816 2.225792 GGCTGGAGATGCCCTTAGT 58.774 57.895 0.00 0.00 44.32 2.24
2742 2841 3.415087 CTGGGGAGGCCTTCCTGG 61.415 72.222 30.10 18.11 44.46 4.45
2743 2842 3.415087 CCTGGGGAGGCCTTCCTG 61.415 72.222 30.10 23.65 44.46 3.86
2751 2850 4.764143 AAAAATCGCCTGGGGAGG 57.236 55.556 18.77 0.00 0.00 4.30
2784 2883 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
2802 2901 2.942648 GAAAATCGGGCTCCTCGGGG 62.943 65.000 0.00 0.00 0.00 5.73
2803 2902 1.523938 GAAAATCGGGCTCCTCGGG 60.524 63.158 0.00 0.00 0.00 5.14
2804 2903 1.883084 CGAAAATCGGGCTCCTCGG 60.883 63.158 0.00 0.00 36.00 4.63
2805 2904 2.526120 GCGAAAATCGGGCTCCTCG 61.526 63.158 1.64 0.00 40.84 4.63
2806 2905 2.180862 GGCGAAAATCGGGCTCCTC 61.181 63.158 1.64 0.00 40.84 3.71
2807 2906 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
2808 2907 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
2809 2908 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
2814 2913 3.876198 CCAGGCCGGCGAAAATCG 61.876 66.667 22.54 2.78 43.89 3.34
2815 2914 3.518068 CCCAGGCCGGCGAAAATC 61.518 66.667 22.54 4.96 0.00 2.17
2826 2925 4.056125 GCTGTTTTCGGCCCAGGC 62.056 66.667 0.00 0.00 45.68 4.85
2833 2932 4.424430 CGTCGGCGCTGTTTTCGG 62.424 66.667 17.37 0.00 0.00 4.30
2834 2933 4.424430 CCGTCGGCGCTGTTTTCG 62.424 66.667 17.37 15.67 36.67 3.46
2835 2934 3.039588 TCCGTCGGCGCTGTTTTC 61.040 61.111 17.37 4.90 36.67 2.29
2836 2935 3.343421 GTCCGTCGGCGCTGTTTT 61.343 61.111 17.37 0.00 36.67 2.43
2847 2946 4.754667 GTTCGGCCTGGGTCCGTC 62.755 72.222 17.15 10.87 46.49 4.79
2891 2990 2.248835 AAAACAGTTCGTCCCGGCG 61.249 57.895 0.00 0.00 0.00 6.46
2892 2991 1.281656 CAAAACAGTTCGTCCCGGC 59.718 57.895 0.00 0.00 0.00 6.13
2893 2992 1.946267 CCAAAACAGTTCGTCCCGG 59.054 57.895 0.00 0.00 0.00 5.73
2894 2993 1.281656 GCCAAAACAGTTCGTCCCG 59.718 57.895 0.00 0.00 0.00 5.14
2895 2994 1.161563 TCGCCAAAACAGTTCGTCCC 61.162 55.000 0.00 0.00 0.00 4.46
2896 2995 0.234884 CTCGCCAAAACAGTTCGTCC 59.765 55.000 0.00 0.00 0.00 4.79
2897 2996 1.214367 TCTCGCCAAAACAGTTCGTC 58.786 50.000 0.00 0.00 0.00 4.20
2898 2997 1.658994 TTCTCGCCAAAACAGTTCGT 58.341 45.000 0.00 0.00 0.00 3.85
2899 2998 2.223157 TGTTTCTCGCCAAAACAGTTCG 60.223 45.455 5.94 0.00 40.64 3.95
2900 2999 3.414549 TGTTTCTCGCCAAAACAGTTC 57.585 42.857 5.94 0.00 40.64 3.01
2904 3003 0.383949 GGCTGTTTCTCGCCAAAACA 59.616 50.000 8.74 8.74 45.59 2.83
2905 3004 0.660300 CGGCTGTTTCTCGCCAAAAC 60.660 55.000 0.00 0.00 46.62 2.43
2906 3005 1.652012 CGGCTGTTTCTCGCCAAAA 59.348 52.632 0.00 0.00 46.62 2.44
2907 3006 2.903547 GCGGCTGTTTCTCGCCAAA 61.904 57.895 0.00 0.00 46.62 3.28
2908 3007 3.353836 GCGGCTGTTTCTCGCCAA 61.354 61.111 0.00 0.00 46.62 4.52
2943 3042 4.719369 AAGACGAGGCGCCGTGTC 62.719 66.667 33.45 33.45 43.49 3.67
2944 3043 4.719369 GAAGACGAGGCGCCGTGT 62.719 66.667 23.83 23.83 43.49 4.49
2950 3049 3.702048 TTGGGGGAAGACGAGGCG 61.702 66.667 0.00 0.00 0.00 5.52
2951 3050 2.046217 GTTGGGGGAAGACGAGGC 60.046 66.667 0.00 0.00 0.00 4.70
2952 3051 2.264794 CGTTGGGGGAAGACGAGG 59.735 66.667 0.00 0.00 38.99 4.63
2953 3052 2.264794 CCGTTGGGGGAAGACGAG 59.735 66.667 0.00 0.00 38.99 4.18
2954 3053 4.011517 GCCGTTGGGGGAAGACGA 62.012 66.667 0.00 0.00 38.99 4.20
2956 3055 3.623703 GAGGCCGTTGGGGGAAGAC 62.624 68.421 0.00 0.00 35.78 3.01
2957 3056 3.327404 GAGGCCGTTGGGGGAAGA 61.327 66.667 0.00 0.00 35.78 2.87
2958 3057 4.778143 CGAGGCCGTTGGGGGAAG 62.778 72.222 0.00 0.00 35.78 3.46
2979 3078 3.595758 GCATTGATTCCCCGCGGG 61.596 66.667 37.99 37.99 46.11 6.13
2980 3079 3.595758 GGCATTGATTCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
2981 3080 2.340453 CTTGGCATTGATTCCCCGCG 62.340 60.000 0.00 0.00 0.00 6.46
2982 3081 1.438814 CTTGGCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
2983 3082 2.019897 GCCTTGGCATTGATTCCCCG 62.020 60.000 6.79 0.00 0.00 5.73
2984 3083 0.688749 AGCCTTGGCATTGATTCCCC 60.689 55.000 14.54 0.00 0.00 4.81
2985 3084 0.462789 CAGCCTTGGCATTGATTCCC 59.537 55.000 14.54 0.00 0.00 3.97
2986 3085 0.179092 GCAGCCTTGGCATTGATTCC 60.179 55.000 14.54 0.00 0.00 3.01
2987 3086 3.357504 GCAGCCTTGGCATTGATTC 57.642 52.632 14.54 0.00 0.00 2.52
3008 3107 2.361610 AATGGCAAGGCTGACCGG 60.362 61.111 0.00 0.00 42.76 5.28
3009 3108 1.033746 ATCAATGGCAAGGCTGACCG 61.034 55.000 0.00 0.00 42.76 4.79
3010 3109 1.135721 GAATCAATGGCAAGGCTGACC 59.864 52.381 0.00 0.00 0.00 4.02
3011 3110 1.135721 GGAATCAATGGCAAGGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
3012 3111 1.006281 AGGAATCAATGGCAAGGCTGA 59.994 47.619 0.00 0.00 0.00 4.26
3013 3112 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
3014 3113 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
3015 3114 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
3016 3115 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
3017 3116 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
3072 3171 4.849329 GTACGCGTGCGAGGGAGG 62.849 72.222 24.59 0.00 42.83 4.30
3073 3172 4.111016 TGTACGCGTGCGAGGGAG 62.111 66.667 24.59 0.00 42.83 4.30
3074 3173 4.409218 GTGTACGCGTGCGAGGGA 62.409 66.667 24.59 0.04 42.83 4.20
3075 3174 4.710695 TGTGTACGCGTGCGAGGG 62.711 66.667 24.59 0.00 42.83 4.30
3076 3175 3.467119 GTGTGTACGCGTGCGAGG 61.467 66.667 24.59 0.00 42.83 4.63
3077 3176 3.812614 CGTGTGTACGCGTGCGAG 61.813 66.667 24.59 9.33 44.11 5.03
3095 3194 3.636313 TATATAGCCGCGCCGCACC 62.636 63.158 22.36 0.00 0.00 5.01
3096 3195 2.126228 TATATAGCCGCGCCGCAC 60.126 61.111 22.36 0.00 0.00 5.34
3097 3196 2.180769 CTATATAGCCGCGCCGCA 59.819 61.111 22.36 9.12 0.00 5.69
3098 3197 3.255379 GCTATATAGCCGCGCCGC 61.255 66.667 22.02 13.06 43.39 6.53
3126 3225 4.624364 TGTGGGCACAGGCGAGTG 62.624 66.667 8.48 8.48 42.47 3.51
3127 3226 4.626081 GTGTGGGCACAGGCGAGT 62.626 66.667 0.00 0.00 44.64 4.18
3165 3264 3.160748 GAGAGGGAGGAGCTGGGC 61.161 72.222 0.00 0.00 0.00 5.36
3166 3265 2.445654 GGAGAGGGAGGAGCTGGG 60.446 72.222 0.00 0.00 0.00 4.45
3167 3266 1.660019 TAGGGAGAGGGAGGAGCTGG 61.660 65.000 0.00 0.00 0.00 4.85
3168 3267 0.469144 GTAGGGAGAGGGAGGAGCTG 60.469 65.000 0.00 0.00 0.00 4.24
3169 3268 1.661004 GGTAGGGAGAGGGAGGAGCT 61.661 65.000 0.00 0.00 0.00 4.09
3170 3269 1.152419 GGTAGGGAGAGGGAGGAGC 60.152 68.421 0.00 0.00 0.00 4.70
3171 3270 0.481128 GAGGTAGGGAGAGGGAGGAG 59.519 65.000 0.00 0.00 0.00 3.69
3172 3271 2.648181 GAGGTAGGGAGAGGGAGGA 58.352 63.158 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.