>input_sequence_58018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------ATGGCGGCCGCGCCGACCCGCGTT
GAGGTTCCGACGCGCTTGGCCGCCCCTGTTCCTCCGTCCATGGCGGCCGCCGGCTGGTCCTCGCTCCCGACCGACCTCGT
GCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCGCCGTCTGCCACAACTGG
CGGTCCGCCACCGAAGACCCTAGGACCGACGCGTCCGACCCCCGCTTCTACCCGCGCTTCTGGATAGTCCTCGACGACGA
CGGGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTCCGCAAGCAGCTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAACGGCTTCTTCGTCCTGGCCGACAGGAGCCCACCTCACGCCGCTCGC
GTCCTCAACCCTCTCACAGGCGCCGTGGTCGTTTTCAAGGCGCCCATGCCCCGGGACGCGTCCGTTGCCGTTTTCTTCTC
CTGTGGCGGCACTGCGCACAATCTCACCGTGCTCTGCGACTCAACTCGTAAGTATTACACGGCTGTTCCGGACAGGGAAA
GTTTCGTCGCCGGGGACATCGACGATGTTTTTTACCATTATATGAGGAAGGTGGTGGTCGGCATTGTCTACTCCAATGGT
GCTGGTTGGGTATCCGTGGCGCAGTCTAATGTCATCATGGAGTATTTGCTCGATTTGTCAGAGAAGCTTCAGATTGATTT
CGTCAAGTTTTTCTCTGTCG------ACCCTCTTGGAGATCACAGCGACGTCCGTTGTTTCCTACTGCATTTTGGTGGGG
AAGTCTTTTTCATCACAATGGCATTAGAACGCATT---GCGCTTCTCGGCATGGAGCCAACGGAGAAACAGGCGCTCACG
CATGTGAAGACCGTGGGCAGGTACGCCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCTAAGTTCCCATC
CGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACACCAGAGATGGGA
AAGACGAGAGGGTGTATGATGACATCAATTTCGTCAAGGAGGACAAGCAGTTTGTCTTCTCCGGCCGCCGTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGTAATTCTGAATTTGTCTGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3A_1_TraesCS3A01G464200
AAAACTATATAAAAACTTTGAAAAATGTTGAAAAAGAATTTTGAAAAATATAAAATGTATATAGAGAAAATATGTATCAT
GTATACAAAAAATGTATAGAAAATTGATCATGTATTCGAAAATTGTTAATCAAGTATTTGAAGAACATTCGAACAAGTAT
TTAAAAAATGTTGACAATGTATTAGGAAAACTGTTAAACTTGTATTTGGAATTTTTAATCAAGAATTAAAAAAATGTTAA
ATATGTACAAAAAATGTTGACCATGTATTAAAGAATGTTAATCTTGAATTTAAAATATGTTACAGGTGTATTAGAAAAAC
GTTTTGGACGTGTACAAGAAATGTAGAAATGAAACCGAGAAGAAAAAAACAATGAAAGCGAAAAGATAAAGAAAAAAGGT
ACAAAAAAGAAATAAAAAATAAAACCGAATAAAGAAATGCAAAACGTATGGAAAACAGATAAAGAATGAAAAAAAAACAT
GAAAACCAAGAAAACTGAAGAAAAACAAGAAAAAAGAATGAAAAAAAAGAGAAGCACCGAAAGAAAACAGGTGAAAACAA
AGAAGAAGAAAAATGAAAGAATGAAAAAACTAGTGAAACCCGAGAAGAAAGGAAGATAAATATTAAAAAAAATCAAAGAA
ACTAATGAGAAAACAAAAAAAAATCTAGAAAACCAGCGAACACGTGCGCGCTTCTCTTCTTCTCCCCGGAACCATTCCCC
CCATTTCCACCCGGAATCCCA----------GCCGCCGCCGCCATCCGATTTTACCCCACCTGCTTCTGCTCGGTGCTGC
TCCTCGCTAGATCTATCTGGTAACTAAATCCTCTTCTGCTTCTTTATGGTGGAGATTGTCTACCTTTCAAGTTTCCGTCG
C------CGCTCGCTTGCTAAAAAGTTGCGTCTTTTGTACGGGGGCAATGGGGATTTGCAGCCAGCTGAGGCAATGGCGG
CCGCACCAACCGGCGTTGAGGTTCCGAAGCCCTTGAGCGCCCCTGTTCTTCCGTCCATGGCGGCCGCGCCGACCCGCGTT
GAGGTTCCGACGCGCTTGGCCGCCCCTGTTCCTCCGTCCATGGCGGCCGCCGGCTGGTCCTCGCTCCCGACCGACCTCGT
GCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCGCCGTCTGCCACAACTGG
CGGTCCGCCACCGAAGACCCTAGGACCGACGCGTCCGACCCCCGCTTCTACCCGCGCTTCTGGATAGTCCTCGACGACGA
CGGGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTCCGCAAGCAGCTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAACGGCTTCTTCGTCCTGGCCGACAGGAGCCCACCTCACGCCGCTCGC
GTCCTCAACCCTCTCACAGGCGCCGTGGTCGTTTTCAAGGCGCCCATGCCCCGGGACGCGTCCGTTGCCGTTTTCTTCTC
CTGTGGCGGCACTGCGCACAATCTCACCGTGCTCTGCGACTCAACTCGTAAGTATTACACGGCTGTTCCGGACAGGGAAA
GTTTCGTCGCCGGGGACATCGACGATGTTTTTTACCATTATATGAGGAAGGTGGTGGTCGGCATTGTCTACTCCAATGGT
GCTGGTTGGGTATCCGTGGCGCAGTCTAATGTCATCATGGAGTATTTGCTCGATTTGTCAGAGAAGCTTCAGATTGATTT
CGTCAAGTTTTTCTCTGTCG------ACCCTCTTGGAGATCACAGCGACGTCCGTTGTTTCCTACTGCATTTTGGTGGGG
AAGTCTTTTTCATCACAATGGCATTAGAACGCATT---GCGCTTCTCGGCATGGAGCCAACGGAGAAACAGGCGCTCACG
CATGTGAAGACCGTGGGCAGGTACGCCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCTAAGTTCCCATC
CGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACACCAGAGATGGGA
AAGACGAGAGGGTGTATGATGACATCAATTTCGTCAAGGAGGACAAGCAGTTTGTCTTCTCCGGCCGCCGTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGTAATTCTGAATTTGTCTGACAGGAAATCT-C-GGAAGGCGCC
GACAACTCTACTTTATCTAGTTTA---ACTCGCTCCCTTCCACTACAG--------GTCTTTTGTGTTGCCCTGACTTGT
TCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTT--------------TAGATCACCTGTGCTGGAATGAACTACTG
TAAGCTGCTTAATTAGCACATGGTATCGA---CCTAATGCTACATCCATTGTTATTGGTGCTATCTATTGTCTCTGTGTG
CTCTTGCCTCTTCCCTTGCAT---TACTACTTAGCAATGCAATCTGGTTT------------------------------
--------GTTTGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGAGTTCTCACTCTGCTGTTCTCTGTTGGCCT
TATTAATTTTTCAGTGTCTTGTTCCAGTGAAGAAAAATGTTTTAGAATTGCGCTCACCGGTCTTCTGTGGAACATAACAT
GA-TGCCATGTCCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATACTATCTACTTGCTTTTGTGAC
ACAGTCACCGTTGCTACTAAGGGCATCTCCAGCCGCGCCCCCAGGAAGGCCTCCCCAGGCGATTTTTTCGCGCCGGCACC
AAAAAAACGGCCCAGTCGCGCCCCGAGGAGCCCGATTTTCGCCGGCCTGGGCCGAAAACAGCGCCGACGGACCCAGGCCG
AACCCGGCGCACTGGGGGGCGCCCGGGGGCGCCGGGACGAACTGTTTTGGCGAGAAACAGCCGCGGGCCCGCCGCGTCAG
CGACACGGCGCCTCGTCTTCCCCCAACGGCCTCGGTTCCCGCGGGGAATCAATGCCAAGGCTGCCGCCGGTCAGCCTTGC
CATTGATTCCTCACGGGCGGCGCGTCACGGGACGGCGCGCCGACGCCTCCCCTCCCTCGCACGCGTACACACGGGTGCGG
CGCGGCTATATAGCCGGTGGCCTGCACTCGCCTGTGCCCACACCAGCCCCACCCCTCGCCGCCGCCCAGCTCCTCCCTCT
CCCTACCTC
>chr3D_680
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------ACACGTGCGCGCTTTTCTTCTTCTCCCCGGAACCATTCCCC
CCATTTCCACCCGGAATCCCTAGCCGCCGCCGCCGCCGCCGCCATCCGATTTTACCCCACCTGCTTCTGATCGGTGCTGC
TCCTCGCTAGATCTATCTGGTAACTAAATCCTCTTCTGCTTCTTTACGGCGGAGATTGTCT-CCTTTCAAGTTTCCGTCG
C------CGCTCGCTTGCTAAAAAGTTGCGTCTTTTGTACGGGGGCAATGGGGGTTTGCAGCCAGCTGAGGCAATGGCGG
CCGCACCAACCGGCGTTGAGGTTCCGACGCCCTTGAGCGCCCCTGTTCTTCCGTCAATGGCGGCCGCGCCGACCCGCGTT
GAGGTTCCGACGCCCTTGGCCGCCCCTGTTCCTCCGTCCATGGCGGCCGCCGTCTGGTCCTCACTCCCGACCGACCTCGT
CCTCTGCATCGCC-ACTG-CCTCCTCGACACCAACGACGTCGACAGCTATGTAGACCTCCGCGCCGTCTGCCACAACTGG
CGGTGCGCCACCGAAGACCCTAGGAGCGACGCGTCCGACCCCCGCTTCCACCCGCGCTTCTGGACAGTCCTCGACGTCGA
CGGGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTTCGCAAGCAGCTCCCGCTGC
TCCGCCACTACTACGTGGTCACCACCACTGCCAACGGCTTCTTCGTCCTGGCTGACAGGAGTCCACCTCACGCCGCTCGG
GTCCTCAACCCTCTCACAGGCGCCGTGGTCGTTTTCAAGGCGCCTGTGCCCCGGGACGCGTCCGTTGCCGTTTTCTTCTC
CTCTGGCGGCACTCCGCGCAATCTCATCGTGCTCTGCGACTCAACTCCCAAGTATTACAGGGCTTTTCGGGACAGTGAAA
GTTTCATCGCCGGGAACATCAACCATGTTTTTTACAGTTATATGAGGAAGGCGGTGGTCGGCAGCGTCTACTCCAATGGT
GCTGGCTGGGTATCGGTGGCGCAGTCTAAAGTTATCATGGAGTATTTGTTTGATTTTTCAAAGCAGCTTCAGGTTGATTT
CGTCAAGTTTTTCTCTGCTG------ACCCTCTTGGACATCGCAGCGACGTCAGGTGTTTCCTACTGGATTTTGTTGGGG
AAGTCTTTTTCATCACAAAGGGATGGGAACGTGTT---GCGGTTCTCGGCATTGAGCCAAAGAAGAAACAGGCGTTCATG
CCCGTGAAGACTTTCGGCAGGTACACCATCTTCATCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGTTCCCATC
CGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACATCAGAGATGGGA
AAGACGAGAGGGTATATGATGTCGTCAATTTCATCAAGGAGGACAAGCAGTTTGTCTCCTCCGGCCCCCGTCCTTTCACC
ATCATTCATCTTCTCTCGAGCTACACGATCAACCTCAGCAATTCTGAATTGGTCTGATAGCAAATCTCC-GGAAGGCGCC
GACAACTCTACTTTATCTAGTTTA---ACTCGCTCC--------------------------------GCCTTGACTTAT
TCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTT--------------TGGATCACCTGTGTTGGAATGAACTACTG
TAAGCTGCTTAATTAGGACATGGTATCGA---CCTAATGCTACATCCATTGTGATTGATGCTATCTATTGTCTCTGTGTG
CTCTTGCCTCTTCCCTTGCATTAGTACTTCTTAGCAATGCAATCTGGTTTTTTTCTTCACTCGCAAAAAAAAAAAAGCAA
TTTGGTTTGTTTGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGAGTTCTCGCTCTGTTGTTCTCTGGTGGCCT
TATTAATTCCTCAATGTCTTGTTCCAGTGAAGAAACATGTTTTAGAATTG--CTCACCGGTCGTCTGTGGAACATAGCAT
GAATGCCATGTCCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATAGTAGCAACCTGCTTTTGTGAC
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3A_742
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GCCGCCGCCGCCATTCGATCTACCAACT-CTGCTTCTTCTTGGTGCTGT
TCCTCTGTAGATCTATCCGGTAACTAAATCCTCTTCTCTTTCCTTACCGCGGCGATTGTCTACTTTTCAAGTTTCCATTG
CGCCGGTCGCTCGCTTGCTAAAAAGTTGCGTCTTTTTGTACGGCGGCATTGGGGTTTGCAGCTAGCTGAGGCCTGAGG--
------------------------------------------------------CGATGGCGGCCGCGCCCG---GCGAT
GAGGTTCCGACGCCTTTCGCGGCCCCTGTTCCTCCGGCCACGGCTGTTGCTGGCTGGTCCTCGCTACCGACCGACCTCGT
GCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCGCCGTCTGCCACAACTGG
CGCTCCGCCACCGACGACCCGAGGAGCGACGTCTCCGACCCCCGCTTCCACCCGCGCTTCTGGATAGTCCTCGACGACGA
CGGGGCCTTCCAGAGCGACGACAGCCGGGTCTTGGTGAACACCGCCACCGGCCGCTTCCTCCGCAAGAAGCTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCCTGGCCGACAGGAGCCCGCCTCACGCTGCTCGC
GTCCTCAACCCTCTCATAGGCGCCGTGGTCCGTTTCAAGGCGCCCCTGCCCCGGGACGCGTCCGTCGCCGTTTTCCTCTT
CTGTGGCGGCACCTCGCACAATCTCACCGTGCTCTGTGACTCAACTCGCAAGTATTACACAGCAGTTCCTGAGAGCAAAC
GTTTCGCCCCCGTGACCACCAACGATGTTATGTACAATTACATGAGGAAGGCGGTGGTCGGCGGCGTGTACGCCAATGGC
GGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTGTCAGAGCAGCTTAAGGTCCATTT
CGTCAAGTTTTTCTCTGTCG------ACCCTCTTGGTCATCGCGGCGATGTCAGGTGTTTCCTACTGGATTTTGGTGGAG
AAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGATGCTCGCG
CCTGTGGAGACCGTGGGCAGGTATGCCATCTTCGTCGGCCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGTTCCCATC
CGTTGAGGCAGACTGCGTCTACTACACTCTAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCATCAGTGATGGGA
AAGATGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTTGTCCCTGTCGGTGCCCGTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGTGATTCTGAACTGGCCTCAAAACAAAGCT-CGT-AAGGTGCC
AACAAATCTTGCTCT--GTCTTTTGGGATAGTGATTCCAATGACCGGCAATGCTATGTCTTTTGTTTTGCCTTGACTTGT
TCCGGGTAA-AATCAGGTTGACTCTAGGAGTCTAGCT--------------TA--------------GAAGGAACTACTG
TAAGCTGCTTAATTAGGAGGACATGCTATCAGCCTTTTGCTACATCTATTATGATTGATGCTATCTATTGT---------
--------------------------------------------------------------------------------
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---------
>chr3B_997
--------------------------------------------------------------------------------
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----------------------------------------------------GTCGATGGCGGCCGCGCCCG---GCTAT
GAGGTTCCGACGCCTTTGGCCGCCCCTGTTCTTCCCTCCATGGCGGCCGCAGGCTGGTCCTCCCTCCCGAGCGACCTCGT
CCTCTGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCGCCGTCTGCCACAACTGG
CGCTCCGCCACCGAGGACCCGAGGAGCGACGCCTCCGACCCCCGCTTCCACCCTCGCTTCTGGATAGTCCTCGACGACGA
CGGCGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTCAACACGGCCACCAGCCGGTTCCTCCGCAAGCAGCTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAACGGCTTCTTGGTCCTGGACGACAGGAGTCCACCTCACGCCGCTCGC
CTCCTCAACCCTCTCACAGGCGCCGTGGTCATTTTCAACGCGCCGGTGCCGCGGGACGCGTCCGTTGCCGTTTTCTTCTC
CTCTGGCGGCACTCCGCACAATCTCATCGTGCTCTGCGACTCAACTCGCAAGTATTACAGGGCTGTTCCGGACAGTGAAT
GTTTCATCGCCGGGGACATCAATCATGTCTTTTACAATTATATGAGGAAGGTGGTGGTCGGCAGCGTCTACTCCAATGGT
GCTGGCTGCGTATCCGTGGCGCAGTCTAATGTCATCATGGAGTATTTGCTCGATTTGTCGGAGAAGCTTCAGACTGATTT
CGTCAAGTTTTTCTCTGTCG------ACCCTCTTGGACATCACAACGACGTCCGTTGTTTCCTATTGCATTTTGGTGGGG
AAGTCTTTTTCATCACAATGGCATTAGAACGCGTTGTTGCGGTCCTCATCGTGGATCCAACGGAGAAACAGGCGCTCACG
CCTGTGAAGACCGTGGGCAGATACGCCATCTTCATCAGCCATCAAAGGTGCCTGGTTGTTGATGCCGCTAAGTTCCCATC
CGTCGAGGCAGACTGTGTCTACTACACCCAAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAACATCAGAGATGGGA
AAGACGAGAGGGTGTATGATGACATCAATTTCGTCAAGGAGGACAAGCATTTTGTCTCCTCCGGCCCCCTTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGCGATTCTTAATTGGTCTGATAGCAAATCT-CGGGAAGGCGCC
GACAACTCTACTTTATCTAGTTTATTAACTCGCTCCCTTCCACTACAG--------GTCTTTTGTGTTGCCTTGATTTGT
TCCAGGCAGGAAACAAGTTGACTCTAGGAGTGTAGTT--------------TGGATCACCTGTGTTGGAATGAACTACTG
TAAGCTGCTTAATTAGGACATGGTATCGA---CCTAATGCTACATCCATTGTGATTGATGCTATCTATTGTCTCTGTGTG
ATCTTGCCTCTTCCCTTGCATTAGTACTTCCTAGCAATGCAATCTGGTTT------------------------------
--------GTTTGCTGCTGAAATTTTCGCTCAATTTTAGCCCGTTTTCTGTGTTCTCGCTCTGTTGTTCTCCGGTGGCCT
TATTAATTCCTCAAT-TCTTGTTCCAGTGAAGAAACATGTTTTAGAATTG--CTCACTGGTCGTCTGTGGAACATAGCAT
GAATGCCATGTCCATATGTAAAGTTTCATCTACTTCTGTGTATGCTTCACCCCCTTATAGTAGCTACTTGCTTTTGTGAC
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
>chr3D_997
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------GTCGATGGCGGCCGCGCCCG---GCGAC
GAGGTTCCGACGCCTTTGGCGGCCCCTGTTCCTCCGGCCACGGCTGTTGCTGGCTGGTCCTCGCTACCGACCGACCTCGT
GCGCCGCATCGCCGACTG-CCTCCTCGACACCAACGACGTCGACTGCTATGTGGACCTCCGCGCCGTCTGCCACAACTGG
CGCTCCGCCACCGAGGACCCGAGGAGCGACGTCTCCGACCCCCGCTTCCACCCGCGCTTCTGGATAGTCCTCGACGACGA
CGAGGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTGAACACCGCCACTGGCCGCTTCCTCCGCAAACAGCTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCCTGGCCGACAGGAGCCCAACTCACGCCGCTCGC
GTCCTCAACCCTCTCACAGGCGCCGTGGTCCGTTTCAAGGCCCCGGTGCCCCGGGACACAACGGTCGCCGTTTTCTTCTT
CTCTGGCAGCACTCTGCACAATCTCACCGTGCTCTGTGACTCAACTGGCAAGTATTACACAGCAGTTCCTGAGAGCAAAC
GTTTCGCCCCCGAGACCACCAACGACGCTATTTACAATTACATGAGGAAGGCGGTGGTCGGCGGCGTGTATGCCAATGGC
GGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTGTCAGAGCAGCTTAAGGTTCATTT
CTTCAAGTTTTTCTCTGTCG------ACCCTCTTGGACATCGTGGCGACGTCAGGTGTTTCCTACTGGATTTTGGTGGAG
AAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGACGCTTGCG
CCTGTGGAGACCGTGGGCAGGTACGCCATCTTCATCGGTCATCAAAGGTGCCTGGTTGTTGATGCCGCCAAGTTCCCATC
CGTTGAGGCAGACTGCGTCTACTACACTCTGGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCCTCAGTGATTGGA
AAGATGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTTGTCCCTGTCGGTGCCCGTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACATCAGCGATTCTGAACTGGCCTCAAAACAAAGCT-GGT-AAGGTGCC
AACAAATCTAG--CT--GTCTTTTGGGATAGTGATTCCAATGACCGACAATGATATGTCTTTTGTTTTGCCTTGACTTGT
TCCGGGCAA-AATCAGGTTGACTCTAGGAGACTAGTTTAGATCACCTGCGGTA--------------GAATGAACTACTG
TAAGCTGCTTAATTAGGAGGACATGTTATCAGCCCTTTGCTACATCTATTATGATCGATGCTATCTATTGT---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
>chr3B_1082
TCCTCGACT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------TCCCGAGCGACCTGGT
GCGCCGCATCGCCGACTGACCTCCTCGACACCAACCATGTTGATTGTTATGTGGACCTCCGTGTCGTCTGCCACAACTGG
CGCTCCGCCACCGAGGATCCAAGGAGCGACGCCTCCGACCCCCACTTCCACCCGTGCTTCTGGATAATCCTTGACGTCGA
CGGCGCCTTCCAGAGCGACGGCTGCCGGGTCTTGGTCAACATCGTCACCGGCCGGTTCCTCCGCAAGCAACTCCCGCTGC
CCCGCCACTACTACGTGGTCACCACCACTGTCAGCGGCTTCTTCGTCTTG--------------GCCTCACGCCATTCGC
GTACTCAACCCTTTCACAGGAGCCGTGCTCTGTTTCAAGGCGCCCGTGCCTCGGGACACGTCGGTCGCTGTTTTCTTCTT
CTTTGGCGGTATTCTGCACAATCTCACCGTGCTCCATGACTCGACTAGCAAGTATTACACGGCCGTTCCTGAAAGCAAAC
ATTTCGCCCCCGAGACCACCAACGATGCTATTTACAATTACATGAGGAACGCCGTGGTCGGCGGCGTGTACACCAATGGC
AGCGGATGGGCAACGGTGGCGCGGTCTAATGTCATCATGGAGAAATTGTTCAATCTGTCGGAGCAGCTTAAGGTTCATTT
CGTCAAGTTTTTCTCTGTCGACCCTCACCCTCTTGAACATCGCGGCGACGTCAGGTGTTTCCTACTGGATTTTGGTGGAG
AAGTCTTTTTCATCACAAAGGCATGGTGACACGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGACGCTGGCG
CCTGTGGAGACCGTGGGCAGGTACCCCATCTTTGTCGGTCATCAAAGGTGCCT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------
>chr3B_1581
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------AAA
GTTTCGCCCCTGAGACCACCAGCAATGCTATTTACAATTACATGAGGAAGGCGGTGGTCGGCGGCGTGTACGCCAATGGC
GGCGGCTGGGCATCGGTGGCGCAGTCTAATGTCATCATGGAGAAATTGTTCAATTTCTCGGAGCAGCTTCAGGTTCATTT
CGTCAAGTTTTTCTCTGTTG------ACCCTCTTGGACATCGTGGCGACGTCAGGTGTTTCCTACTGGATTTTGGTGGAG
AAGTCTTTTTCATCACAAAGGCATGGGGACGCGTT---ATGGTTCTCGGCATCGAACCAACGGAGAAACAGACGCTCGCG
CCTGTGGAGACCGTGGGCAGGTATGCCATCTTCATCGGTCATCAAAGGTGCCTGGTTGTTGATGCCGCCATGTTCCCATC
CGTTGAGGCAGACTGCGTCTACTACACTCTAGACGTTGGTAAATTTGCTTTCATCTGGAAGCACAGCATCAGTGATGGGA
AAGACGAGAGGGTGTTTGACGCCATCGATTTCGTCAAGGAGAACAAGCGGTTCGTCCCTGTCGGTGCCCGTCCTTTCACC
ATCATCCAGCTTCTCTCGAGCTACACCATCAACCTCAGCGATTCTGAACTGGCCTCAACACAAAGCT-TGT-AAGGTGCC
AACAAATCTTG--CTCTGTCTTTTGGGATAGTGATTTCGATGACTGGCAATGCTATCTCTTTTGTTTTGCCTTGACTTGT
TCCGGGCAA-AATCAGGTTGACTCTAGGAGTCTAGCTTAGATCACCTGCGGTA--------------GAAGGAACTACTG
TAAGCTGCTTAATTAGGAGGACATGTTATCAGCCTTTTGCTACATCTATTATGATTGATGCTATCTATTGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>SNPs
SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------S--S------------------------------
-----------------------------------------------------S--------------------------
---------------------------S---------------------------S------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S----------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------S----------------------------------S--------------------------S----
--------------------S--------------S---------------------------SS---------------
-----S--------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------S--------S--------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
---------------------------------------------------------S--------S-------------
--------------------------------------------------S------S--S-------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------S---------------
----------------S-----------------------------------S----S----------------------
----------------------------S---------------------------------------------------
---------------------------------------------------------S-----S---------S------
--------SS---S---------------------S--------------SS----------S-------------S---
-----------------------------------------------------------S--S-----------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGCACCGAAAGAAAACAGGT--------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
>reverse_2312
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CTGACTTGT
TCCAGGCAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
