Multiple sequence alignment - TraesCS3A01G457400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G457400 chr3A 100.000 4648 0 0 1 4648 694964326 694968973 0.000000e+00 8584.0
1 TraesCS3A01G457400 chr3D 95.524 3664 112 12 820 4470 558558249 558561873 0.000000e+00 5810.0
2 TraesCS3A01G457400 chr3D 91.429 350 16 6 1 350 558556813 558557148 7.040000e-128 468.0
3 TraesCS3A01G457400 chr3D 92.913 254 18 0 348 601 558557178 558557431 2.040000e-98 370.0
4 TraesCS3A01G457400 chr3D 88.889 243 16 6 1904 2135 236629042 236628800 5.880000e-74 289.0
5 TraesCS3A01G457400 chr3D 95.570 158 6 1 598 754 558557506 558557663 7.720000e-63 252.0
6 TraesCS3A01G457400 chr3D 95.745 94 3 1 4553 4646 558561897 558561989 2.900000e-32 150.0
7 TraesCS3A01G457400 chr3D 97.368 38 1 0 783 820 558557672 558557709 1.080000e-06 65.8
8 TraesCS3A01G457400 chr3B 91.672 1429 79 22 2134 3545 741302181 741303586 0.000000e+00 1943.0
9 TraesCS3A01G457400 chr3B 89.074 842 62 12 348 1176 741300520 741301344 0.000000e+00 1018.0
10 TraesCS3A01G457400 chr3B 91.144 734 47 7 1174 1896 741301466 741302192 0.000000e+00 979.0
11 TraesCS3A01G457400 chr3B 87.280 739 68 7 3456 4191 741303586 741304301 0.000000e+00 821.0
12 TraesCS3A01G457400 chr3B 90.782 358 17 7 1 350 741300138 741300487 9.110000e-127 464.0
13 TraesCS3A01G457400 chr3B 88.750 240 16 7 1904 2132 353997425 353997186 2.740000e-72 283.0
14 TraesCS3A01G457400 chr2B 89.939 656 36 13 2335 2982 304252312 304252945 0.000000e+00 819.0
15 TraesCS3A01G457400 chr2B 84.071 226 25 3 1918 2132 38241845 38241620 1.690000e-49 207.0
16 TraesCS3A01G457400 chr1D 88.797 241 16 5 1903 2132 378551667 378551907 7.610000e-73 285.0
17 TraesCS3A01G457400 chr1D 83.267 251 28 4 1894 2132 357266627 357266379 7.830000e-53 219.0
18 TraesCS3A01G457400 chr5D 88.186 237 24 3 1903 2135 441231531 441231767 3.540000e-71 279.0
19 TraesCS3A01G457400 chr5D 87.137 241 19 4 1903 2132 152392119 152392358 3.570000e-66 263.0
20 TraesCS3A01G457400 chr5D 93.642 173 11 0 1910 2082 58532880 58532708 4.610000e-65 259.0
21 TraesCS3A01G457400 chr2D 87.500 240 19 3 1904 2132 341693856 341694095 2.760000e-67 267.0
22 TraesCS3A01G457400 chr7D 87.137 241 19 4 1903 2132 137681604 137681843 3.570000e-66 263.0
23 TraesCS3A01G457400 chr4D 86.235 247 22 4 1903 2138 370775682 370775437 1.660000e-64 257.0
24 TraesCS3A01G457400 chr4D 91.713 181 15 0 1903 2083 358933601 358933421 7.720000e-63 252.0
25 TraesCS3A01G457400 chr4D 88.073 218 14 2 1926 2132 347523768 347523984 9.990000e-62 248.0
26 TraesCS3A01G457400 chr4B 86.250 240 22 1 1904 2132 374722397 374722636 2.780000e-62 250.0
27 TraesCS3A01G457400 chr6A 85.417 240 24 4 1904 2132 140008596 140008835 6.010000e-59 239.0
28 TraesCS3A01G457400 chr4A 84.388 237 26 5 1904 2129 692915755 692915991 6.050000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G457400 chr3A 694964326 694968973 4647 False 8584.000000 8584 100.000000 1 4648 1 chr3A.!!$F1 4647
1 TraesCS3A01G457400 chr3D 558556813 558561989 5176 False 1185.966667 5810 94.758167 1 4646 6 chr3D.!!$F1 4645
2 TraesCS3A01G457400 chr3B 741300138 741304301 4163 False 1045.000000 1943 89.990400 1 4191 5 chr3B.!!$F1 4190
3 TraesCS3A01G457400 chr2B 304252312 304252945 633 False 819.000000 819 89.939000 2335 2982 1 chr2B.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 565 0.251916 CTCATTTGGTGGGGACGCTA 59.748 55.0 0.0 0.0 41.78 4.26 F
1543 2348 0.247736 AGATCTCAGTGTTGGACGGC 59.752 55.0 0.0 0.0 0.00 5.68 F
1544 2349 0.247736 GATCTCAGTGTTGGACGGCT 59.752 55.0 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 3099 1.699634 AGCTGTCTCAAAAGGTAGCCA 59.300 47.619 0.00 0.0 34.44 4.75 R
3358 4203 1.066573 CAACAGGAGTGGAGGCAGTAG 60.067 57.143 0.00 0.0 0.00 2.57 R
3659 4587 6.701841 GGTTATCGATGAATGTTAGCTGAAGA 59.298 38.462 8.54 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.606604 AAGCGGTTCTATCGTGTGGT 59.393 50.000 0.00 0.00 0.00 4.16
66 67 3.003763 GGTCGCTGTTCCTCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
132 140 3.071747 GGGAGATTCACCCATCTAGGTTC 59.928 52.174 13.74 0.00 46.05 3.62
166 174 2.381725 AGCGACTAACCCTAACTTGC 57.618 50.000 0.00 0.00 0.00 4.01
211 219 7.954666 TCCTGGTATTTTCCTATTTTCCTTG 57.045 36.000 0.00 0.00 0.00 3.61
212 220 6.379988 TCCTGGTATTTTCCTATTTTCCTTGC 59.620 38.462 0.00 0.00 0.00 4.01
213 221 6.381133 CCTGGTATTTTCCTATTTTCCTTGCT 59.619 38.462 0.00 0.00 0.00 3.91
214 222 7.169158 TGGTATTTTCCTATTTTCCTTGCTG 57.831 36.000 0.00 0.00 0.00 4.41
215 223 6.154363 TGGTATTTTCCTATTTTCCTTGCTGG 59.846 38.462 0.00 0.00 37.10 4.85
216 224 5.682234 ATTTTCCTATTTTCCTTGCTGGG 57.318 39.130 0.00 0.00 36.20 4.45
217 225 4.396357 TTTCCTATTTTCCTTGCTGGGA 57.604 40.909 0.00 0.00 36.20 4.37
218 226 3.652057 TCCTATTTTCCTTGCTGGGAG 57.348 47.619 0.00 0.00 36.66 4.30
219 227 2.027385 CCTATTTTCCTTGCTGGGAGC 58.973 52.381 0.00 0.00 42.82 4.70
260 273 2.092323 GTGGGATGTTTAACTGAGGCC 58.908 52.381 0.00 0.00 0.00 5.19
330 344 3.008049 GTCTTGTTAGATCCACCCTGTGT 59.992 47.826 0.00 0.00 31.86 3.72
403 452 7.653311 AGTGAATGCTGAACTTTGGTTAAATTC 59.347 33.333 0.00 0.00 35.58 2.17
433 482 9.727859 TCCTTAATTTGTGCTTGTATAGTTGTA 57.272 29.630 0.00 0.00 0.00 2.41
444 493 7.065324 TGCTTGTATAGTTGTATTAAGCACACC 59.935 37.037 0.00 0.00 39.82 4.16
448 497 3.746940 AGTTGTATTAAGCACACCCGTT 58.253 40.909 0.00 0.00 0.00 4.44
468 517 9.284968 ACCCGTTCATCTTATTTTGGATATAAG 57.715 33.333 0.00 0.00 37.07 1.73
492 541 7.398024 AGTAGGCTTTCTATTGTGAATTGAGT 58.602 34.615 0.00 0.00 0.00 3.41
496 545 6.072508 GGCTTTCTATTGTGAATTGAGTGTCA 60.073 38.462 0.00 0.00 0.00 3.58
516 565 0.251916 CTCATTTGGTGGGGACGCTA 59.748 55.000 0.00 0.00 41.78 4.26
537 586 2.436646 CGCTAACCTGCCCACCAG 60.437 66.667 0.00 0.00 41.41 4.00
588 637 3.626924 GGGTGCCTGGTGTCTCGT 61.627 66.667 0.00 0.00 0.00 4.18
610 737 6.706716 TCGTATGTTCTTGTACAAACAATCCA 59.293 34.615 15.20 5.37 44.43 3.41
611 738 7.226918 TCGTATGTTCTTGTACAAACAATCCAA 59.773 33.333 15.20 1.28 44.43 3.53
726 853 5.238432 ACTTGAATGTTGAAATGCGTAGACA 59.762 36.000 0.00 0.00 0.00 3.41
774 902 1.947456 CGGCCTAGTTTCCTAAATGGC 59.053 52.381 0.00 0.00 35.14 4.40
775 903 2.682563 CGGCCTAGTTTCCTAAATGGCA 60.683 50.000 0.00 0.00 36.51 4.92
981 1662 1.881973 TCCATTGCTTCAGTTCACTGC 59.118 47.619 1.74 0.00 43.46 4.40
1200 2005 5.519566 CAGTGAAGCACTTAAATTTGTTGCA 59.480 36.000 17.60 0.00 42.59 4.08
1245 2050 2.222678 CAGCTGTGCTTATAGAATGGCG 59.777 50.000 5.25 0.00 36.40 5.69
1395 2200 9.314321 CAGTATTTGTAGTTCTAACCAATCGAT 57.686 33.333 0.00 0.00 0.00 3.59
1414 2219 5.674525 TCGATGCATTTAAGAGTGAGGAAT 58.325 37.500 0.00 0.00 0.00 3.01
1543 2348 0.247736 AGATCTCAGTGTTGGACGGC 59.752 55.000 0.00 0.00 0.00 5.68
1544 2349 0.247736 GATCTCAGTGTTGGACGGCT 59.752 55.000 0.00 0.00 0.00 5.52
1545 2350 0.687354 ATCTCAGTGTTGGACGGCTT 59.313 50.000 0.00 0.00 0.00 4.35
1546 2351 1.334160 TCTCAGTGTTGGACGGCTTA 58.666 50.000 0.00 0.00 0.00 3.09
1547 2352 1.899814 TCTCAGTGTTGGACGGCTTAT 59.100 47.619 0.00 0.00 0.00 1.73
1548 2353 2.002586 CTCAGTGTTGGACGGCTTATG 58.997 52.381 0.00 0.00 0.00 1.90
1549 2354 1.346395 TCAGTGTTGGACGGCTTATGT 59.654 47.619 0.00 0.00 0.00 2.29
1550 2355 1.732259 CAGTGTTGGACGGCTTATGTC 59.268 52.381 0.00 0.00 35.60 3.06
1631 2448 7.174946 ACCAAGTTACAAACCAGATAATGTGAG 59.825 37.037 0.00 0.00 0.00 3.51
1857 2677 4.471386 ACTACAGGACAGCAGGTTTGATAT 59.529 41.667 0.00 0.00 0.00 1.63
1858 2678 3.878778 ACAGGACAGCAGGTTTGATATC 58.121 45.455 0.00 0.00 0.00 1.63
1859 2679 3.264193 ACAGGACAGCAGGTTTGATATCA 59.736 43.478 0.00 0.00 0.00 2.15
1860 2680 4.080129 ACAGGACAGCAGGTTTGATATCAT 60.080 41.667 6.17 0.00 0.00 2.45
1862 2682 5.468072 CAGGACAGCAGGTTTGATATCATAC 59.532 44.000 15.61 15.61 0.00 2.39
1863 2683 5.367937 AGGACAGCAGGTTTGATATCATACT 59.632 40.000 21.00 11.04 0.00 2.12
1972 2799 9.674824 GATTGCCTTTGACTATTGATAAGATTG 57.325 33.333 0.00 0.00 0.00 2.67
1976 2803 8.125448 GCCTTTGACTATTGATAAGATTGACAC 58.875 37.037 0.00 0.00 0.00 3.67
2017 2844 8.757982 ATGTGAAAATTATATCACTGGAAGCT 57.242 30.769 15.68 0.00 44.86 3.74
2018 2845 8.213518 TGTGAAAATTATATCACTGGAAGCTC 57.786 34.615 15.68 0.00 44.86 4.09
2019 2846 7.283127 TGTGAAAATTATATCACTGGAAGCTCC 59.717 37.037 15.68 0.00 44.86 4.70
2020 2847 7.500559 GTGAAAATTATATCACTGGAAGCTCCT 59.499 37.037 10.21 0.00 42.07 3.69
2021 2848 8.055181 TGAAAATTATATCACTGGAAGCTCCTT 58.945 33.333 0.00 0.00 37.46 3.36
2022 2849 8.829373 AAAATTATATCACTGGAAGCTCCTTT 57.171 30.769 0.00 0.00 37.46 3.11
2023 2850 8.457238 AAATTATATCACTGGAAGCTCCTTTC 57.543 34.615 0.00 0.00 37.46 2.62
2024 2851 6.560003 TTATATCACTGGAAGCTCCTTTCA 57.440 37.500 0.00 0.00 37.46 2.69
2025 2852 2.550830 TCACTGGAAGCTCCTTTCAC 57.449 50.000 0.00 0.00 37.46 3.18
2026 2853 1.151668 CACTGGAAGCTCCTTTCACG 58.848 55.000 0.00 0.00 37.46 4.35
2027 2854 0.759346 ACTGGAAGCTCCTTTCACGT 59.241 50.000 0.00 0.00 37.46 4.49
2028 2855 1.968493 ACTGGAAGCTCCTTTCACGTA 59.032 47.619 0.00 0.00 37.46 3.57
2029 2856 2.567615 ACTGGAAGCTCCTTTCACGTAT 59.432 45.455 0.00 0.00 37.46 3.06
2066 2893 3.976942 GCTTTGTGTAACTTGCATGTCAG 59.023 43.478 5.61 0.00 38.04 3.51
2093 2920 3.955650 TTGCTCTAAAGTTAGCCTCGT 57.044 42.857 0.00 0.00 37.97 4.18
2097 2924 5.786311 TGCTCTAAAGTTAGCCTCGTAAAA 58.214 37.500 0.00 0.00 37.97 1.52
2098 2925 5.636543 TGCTCTAAAGTTAGCCTCGTAAAAC 59.363 40.000 0.00 0.00 37.97 2.43
2165 2992 5.359009 CCATGTATCTCTTTGCTTTGGATGT 59.641 40.000 0.00 0.00 0.00 3.06
2272 3099 2.369203 CCATCTGATGCACCAGAGAGAT 59.631 50.000 17.63 0.00 45.27 2.75
2446 3273 7.872881 TCTCTACAGTAAGTGACTAAGTGTTG 58.127 38.462 0.00 0.00 35.64 3.33
2468 3295 8.660373 TGTTGTGCGAGAAATATTTTTGTTTTT 58.340 25.926 1.43 0.00 0.00 1.94
2993 3828 5.543020 ACCATGAGATTGATGAGCTATCTGA 59.457 40.000 0.00 0.00 38.84 3.27
3007 3842 3.323403 GCTATCTGAGTATTGCTGAGGGT 59.677 47.826 0.00 0.00 0.00 4.34
3087 3922 3.047796 CACTTTGCAGCTTGAACATGTC 58.952 45.455 0.00 0.00 0.00 3.06
3196 4037 5.036916 TCCTGGACATTTGGTTCCTAGTAT 58.963 41.667 0.00 0.00 0.00 2.12
3220 4064 1.751351 GGTCCTGCTTCTAAAATGCCC 59.249 52.381 0.00 0.00 0.00 5.36
3232 4076 7.765819 GCTTCTAAAATGCCCAAATAAGATGTT 59.234 33.333 0.00 0.00 0.00 2.71
3309 4154 4.447290 TGTCTTCGACCACAGAAATTCAA 58.553 39.130 0.00 0.00 0.00 2.69
3358 4203 8.688747 ATTTCCTGACATATTTCTGATCCTTC 57.311 34.615 0.00 0.00 0.00 3.46
3486 4331 2.246719 AGGTGAACTCAGTTGCACTC 57.753 50.000 15.42 8.90 0.00 3.51
3659 4587 8.164070 AGTTACATGGAGTAGAAAGGAAATGTT 58.836 33.333 0.00 0.00 33.43 2.71
3771 4699 3.550030 CGGTTTTTGGTACCAAAGCAGAG 60.550 47.826 32.78 22.16 45.15 3.35
3782 4710 1.989165 CAAAGCAGAGCTCGTGTACTC 59.011 52.381 8.37 0.00 38.25 2.59
3874 4803 1.780919 GCCTCCTACCCCATTATGGTT 59.219 52.381 10.65 0.00 37.31 3.67
3895 4824 7.665690 TGGTTAACAGCATTTGAAATGTACAT 58.334 30.769 18.12 1.41 0.00 2.29
3940 4869 6.649973 CCAATGGCAGTTTATTTTGATTGTCA 59.350 34.615 0.00 0.00 0.00 3.58
3995 4924 1.833630 TCTTAGTGGCTGGACATGGAG 59.166 52.381 0.00 0.00 0.00 3.86
4116 5048 0.173029 TGTGTTTGTGTGCTTGCCTG 59.827 50.000 0.00 0.00 0.00 4.85
4120 5052 0.032403 TTTGTGTGCTTGCCTGCATC 59.968 50.000 4.08 2.64 45.23 3.91
4146 5078 7.042658 CGCTAAACTGTAGATTAGATGGGTTTC 60.043 40.741 11.64 0.00 33.77 2.78
4152 5084 7.607991 ACTGTAGATTAGATGGGTTTCTGTTTG 59.392 37.037 0.00 0.00 0.00 2.93
4161 5093 2.764010 GGGTTTCTGTTTGTTCCTGGTT 59.236 45.455 0.00 0.00 0.00 3.67
4228 5160 4.501229 CCAGTGTGTGGTAATTGTTTGCAT 60.501 41.667 0.00 0.00 42.17 3.96
4284 5216 4.897509 TGCTTCATGGATCCTATACCTG 57.102 45.455 14.23 1.43 0.00 4.00
4285 5217 3.008375 TGCTTCATGGATCCTATACCTGC 59.992 47.826 14.23 9.17 0.00 4.85
4287 5219 4.263243 GCTTCATGGATCCTATACCTGCTT 60.263 45.833 14.23 0.00 0.00 3.91
4288 5220 4.897509 TCATGGATCCTATACCTGCTTG 57.102 45.455 14.23 0.00 0.00 4.01
4300 5232 0.971386 CCTGCTTGTGGCCTGATTTT 59.029 50.000 3.32 0.00 40.92 1.82
4340 5272 9.710900 AGCATAATCGTATGTGAATCTCATTTA 57.289 29.630 3.01 0.00 39.55 1.40
4397 5329 4.214993 AGAGGGTACTTGGCCATAGTAT 57.785 45.455 22.44 12.36 31.31 2.12
4398 5330 4.567857 AGAGGGTACTTGGCCATAGTATT 58.432 43.478 22.44 14.88 31.31 1.89
4399 5331 4.975794 AGAGGGTACTTGGCCATAGTATTT 59.024 41.667 22.44 14.64 31.31 1.40
4400 5332 6.148186 AGAGGGTACTTGGCCATAGTATTTA 58.852 40.000 22.44 7.33 31.31 1.40
4401 5333 6.792977 AGAGGGTACTTGGCCATAGTATTTAT 59.207 38.462 22.44 13.48 31.31 1.40
4410 5342 6.314120 TGGCCATAGTATTTATCCTTTGCAT 58.686 36.000 0.00 0.00 0.00 3.96
4430 5362 8.484641 TTGCATTCTCTTACTTTCTAGTGATG 57.515 34.615 0.00 0.00 35.78 3.07
4446 5378 7.565680 TCTAGTGATGGATAAAGGGTTTTCTC 58.434 38.462 0.00 0.00 0.00 2.87
4470 5402 8.648698 TCTCCAATTGATTGAAAGAATAACCA 57.351 30.769 7.12 0.00 40.14 3.67
4471 5403 8.742777 TCTCCAATTGATTGAAAGAATAACCAG 58.257 33.333 7.12 0.00 40.14 4.00
4472 5404 8.421249 TCCAATTGATTGAAAGAATAACCAGT 57.579 30.769 7.12 0.00 40.14 4.00
4473 5405 8.869109 TCCAATTGATTGAAAGAATAACCAGTT 58.131 29.630 7.12 0.00 40.14 3.16
4474 5406 9.492973 CCAATTGATTGAAAGAATAACCAGTTT 57.507 29.630 7.12 0.00 40.14 2.66
4478 5410 9.748708 TTGATTGAAAGAATAACCAGTTTGAAG 57.251 29.630 0.00 0.00 0.00 3.02
4479 5411 8.912988 TGATTGAAAGAATAACCAGTTTGAAGT 58.087 29.630 0.00 0.00 0.00 3.01
4480 5412 9.399403 GATTGAAAGAATAACCAGTTTGAAGTC 57.601 33.333 0.00 0.00 0.00 3.01
4481 5413 7.272037 TGAAAGAATAACCAGTTTGAAGTCC 57.728 36.000 0.00 0.00 0.00 3.85
4482 5414 6.264518 TGAAAGAATAACCAGTTTGAAGTCCC 59.735 38.462 0.00 0.00 0.00 4.46
4483 5415 5.584551 AGAATAACCAGTTTGAAGTCCCT 57.415 39.130 0.00 0.00 0.00 4.20
4484 5416 5.953571 AGAATAACCAGTTTGAAGTCCCTT 58.046 37.500 0.00 0.00 0.00 3.95
4485 5417 6.373759 AGAATAACCAGTTTGAAGTCCCTTT 58.626 36.000 0.00 0.00 0.00 3.11
4486 5418 7.523415 AGAATAACCAGTTTGAAGTCCCTTTA 58.477 34.615 0.00 0.00 0.00 1.85
4487 5419 8.170730 AGAATAACCAGTTTGAAGTCCCTTTAT 58.829 33.333 0.00 0.00 0.00 1.40
4488 5420 7.939784 ATAACCAGTTTGAAGTCCCTTTATC 57.060 36.000 0.00 0.00 0.00 1.75
4489 5421 5.584551 ACCAGTTTGAAGTCCCTTTATCT 57.415 39.130 0.00 0.00 0.00 1.98
4490 5422 5.316987 ACCAGTTTGAAGTCCCTTTATCTG 58.683 41.667 0.00 0.00 0.00 2.90
4491 5423 5.163088 ACCAGTTTGAAGTCCCTTTATCTGT 60.163 40.000 0.00 0.00 0.00 3.41
4492 5424 6.043938 ACCAGTTTGAAGTCCCTTTATCTGTA 59.956 38.462 0.00 0.00 0.00 2.74
4493 5425 6.371825 CCAGTTTGAAGTCCCTTTATCTGTAC 59.628 42.308 0.00 0.00 0.00 2.90
4494 5426 6.371825 CAGTTTGAAGTCCCTTTATCTGTACC 59.628 42.308 0.00 0.00 0.00 3.34
4500 5432 6.697641 AGTCCCTTTATCTGTACCTTTGAA 57.302 37.500 0.00 0.00 0.00 2.69
4502 5434 6.272558 AGTCCCTTTATCTGTACCTTTGAAGT 59.727 38.462 0.00 0.00 0.00 3.01
4517 5449 5.220739 CCTTTGAAGTGAATATCAGCTTCCG 60.221 44.000 14.38 7.62 35.56 4.30
4520 5452 5.674525 TGAAGTGAATATCAGCTTCCGATT 58.325 37.500 14.38 0.00 35.56 3.34
4521 5453 5.525012 TGAAGTGAATATCAGCTTCCGATTG 59.475 40.000 14.38 0.00 35.56 2.67
4522 5454 5.282055 AGTGAATATCAGCTTCCGATTGA 57.718 39.130 0.00 0.00 0.00 2.57
4523 5455 5.862845 AGTGAATATCAGCTTCCGATTGAT 58.137 37.500 0.00 0.00 35.79 2.57
4524 5456 5.699915 AGTGAATATCAGCTTCCGATTGATG 59.300 40.000 0.00 0.00 33.81 3.07
4525 5457 4.999311 TGAATATCAGCTTCCGATTGATGG 59.001 41.667 0.00 0.00 33.81 3.51
4526 5458 4.897509 ATATCAGCTTCCGATTGATGGA 57.102 40.909 0.00 0.00 33.81 3.41
4527 5459 2.609427 TCAGCTTCCGATTGATGGAG 57.391 50.000 0.00 0.00 36.72 3.86
4528 5460 2.110578 TCAGCTTCCGATTGATGGAGA 58.889 47.619 0.00 0.00 36.72 3.71
4529 5461 2.102084 TCAGCTTCCGATTGATGGAGAG 59.898 50.000 0.00 0.00 36.72 3.20
4530 5462 2.114616 AGCTTCCGATTGATGGAGAGT 58.885 47.619 0.00 0.00 36.72 3.24
4531 5463 3.068732 CAGCTTCCGATTGATGGAGAGTA 59.931 47.826 0.00 0.00 36.72 2.59
4532 5464 3.900601 AGCTTCCGATTGATGGAGAGTAT 59.099 43.478 0.00 0.00 36.72 2.12
4533 5465 5.047731 CAGCTTCCGATTGATGGAGAGTATA 60.048 44.000 0.00 0.00 36.72 1.47
4534 5466 5.540337 AGCTTCCGATTGATGGAGAGTATAA 59.460 40.000 0.00 0.00 36.72 0.98
4535 5467 6.042093 AGCTTCCGATTGATGGAGAGTATAAA 59.958 38.462 0.00 0.00 36.72 1.40
4536 5468 6.876257 GCTTCCGATTGATGGAGAGTATAAAT 59.124 38.462 0.00 0.00 36.72 1.40
4537 5469 7.064016 GCTTCCGATTGATGGAGAGTATAAATC 59.936 40.741 0.00 0.00 36.72 2.17
4538 5470 7.539034 TCCGATTGATGGAGAGTATAAATCA 57.461 36.000 0.00 0.00 29.41 2.57
4539 5471 7.606349 TCCGATTGATGGAGAGTATAAATCAG 58.394 38.462 0.00 0.00 29.41 2.90
4540 5472 6.312426 CCGATTGATGGAGAGTATAAATCAGC 59.688 42.308 0.00 0.00 29.41 4.26
4541 5473 6.312426 CGATTGATGGAGAGTATAAATCAGCC 59.688 42.308 0.00 0.00 29.41 4.85
4542 5474 6.753913 TTGATGGAGAGTATAAATCAGCCT 57.246 37.500 0.00 0.00 0.00 4.58
4543 5475 6.106648 TGATGGAGAGTATAAATCAGCCTG 57.893 41.667 0.00 0.00 0.00 4.85
4544 5476 4.963318 TGGAGAGTATAAATCAGCCTGG 57.037 45.455 0.00 0.00 0.00 4.45
4545 5477 4.556697 TGGAGAGTATAAATCAGCCTGGA 58.443 43.478 0.00 0.00 0.00 3.86
4546 5478 4.968719 TGGAGAGTATAAATCAGCCTGGAA 59.031 41.667 0.00 0.00 0.00 3.53
4547 5479 5.428457 TGGAGAGTATAAATCAGCCTGGAAA 59.572 40.000 0.00 0.00 0.00 3.13
4548 5480 5.994668 GGAGAGTATAAATCAGCCTGGAAAG 59.005 44.000 0.00 0.00 0.00 2.62
4549 5481 6.183361 GGAGAGTATAAATCAGCCTGGAAAGA 60.183 42.308 0.00 0.00 0.00 2.52
4550 5482 6.587273 AGAGTATAAATCAGCCTGGAAAGAC 58.413 40.000 0.00 0.00 0.00 3.01
4551 5483 5.360591 AGTATAAATCAGCCTGGAAAGACG 58.639 41.667 0.00 0.00 0.00 4.18
4552 5484 2.859165 AAATCAGCCTGGAAAGACGA 57.141 45.000 0.00 0.00 0.00 4.20
4553 5485 3.356529 AAATCAGCCTGGAAAGACGAT 57.643 42.857 0.00 0.00 0.00 3.73
4554 5486 4.487714 AAATCAGCCTGGAAAGACGATA 57.512 40.909 0.00 0.00 0.00 2.92
4555 5487 3.742433 ATCAGCCTGGAAAGACGATAG 57.258 47.619 0.00 0.00 46.19 2.08
4608 5540 1.293924 CTGCCAAGCGTATTCAGGAG 58.706 55.000 0.00 0.00 0.00 3.69
4609 5541 0.744414 TGCCAAGCGTATTCAGGAGC 60.744 55.000 0.00 0.00 0.00 4.70
4640 5572 7.099266 TGCACCATGAATCTTAATTACTTGG 57.901 36.000 0.00 0.00 0.00 3.61
4641 5573 5.979517 GCACCATGAATCTTAATTACTTGGC 59.020 40.000 0.00 0.00 0.00 4.52
4642 5574 6.405731 GCACCATGAATCTTAATTACTTGGCA 60.406 38.462 0.00 0.00 0.00 4.92
4644 5576 8.199449 CACCATGAATCTTAATTACTTGGCATT 58.801 33.333 0.00 0.00 0.00 3.56
4645 5577 9.420118 ACCATGAATCTTAATTACTTGGCATTA 57.580 29.630 0.00 0.00 0.00 1.90
4646 5578 9.683069 CCATGAATCTTAATTACTTGGCATTAC 57.317 33.333 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.984570 CAGAGGGGAGGAACAGCGA 60.985 63.158 0.00 0.00 0.00 4.93
132 140 6.020041 GGTTAGTCGCTACTAAGGAAAATTCG 60.020 42.308 10.86 0.00 46.36 3.34
211 219 1.587547 GCACTAGTATTGCTCCCAGC 58.412 55.000 5.29 0.00 42.82 4.85
217 225 9.740394 CCACCTTGGATTAGCACTAGTATTGCT 62.740 44.444 17.89 17.89 46.14 3.91
218 226 5.237344 CACCTTGGATTAGCACTAGTATTGC 59.763 44.000 4.38 4.38 40.52 3.56
219 227 5.760253 CCACCTTGGATTAGCACTAGTATTG 59.240 44.000 0.00 0.00 40.96 1.90
220 228 5.163195 CCCACCTTGGATTAGCACTAGTATT 60.163 44.000 0.00 0.00 40.96 1.89
221 229 4.348168 CCCACCTTGGATTAGCACTAGTAT 59.652 45.833 0.00 0.00 40.96 2.12
222 230 3.709653 CCCACCTTGGATTAGCACTAGTA 59.290 47.826 0.00 0.00 40.96 1.82
223 231 2.505819 CCCACCTTGGATTAGCACTAGT 59.494 50.000 0.00 0.00 40.96 2.57
227 240 2.301346 CATCCCACCTTGGATTAGCAC 58.699 52.381 0.00 0.00 42.62 4.40
260 273 4.505922 GTCGATCTAACAAGGAAGCATGAG 59.494 45.833 0.00 0.00 0.00 2.90
330 344 2.175621 CATGCATCGAGAAGGCGCA 61.176 57.895 10.83 0.00 36.95 6.09
403 452 9.167311 ACTATACAAGCACAAATTAAGGAAGAG 57.833 33.333 0.00 0.00 0.00 2.85
433 482 3.350219 AGATGAACGGGTGTGCTTAAT 57.650 42.857 0.00 0.00 0.00 1.40
468 517 7.119846 ACACTCAATTCACAATAGAAAGCCTAC 59.880 37.037 0.00 0.00 0.00 3.18
492 541 1.144691 TCCCCACCAAATGAGTGACA 58.855 50.000 0.00 0.00 37.42 3.58
496 545 1.303317 GCGTCCCCACCAAATGAGT 60.303 57.895 0.00 0.00 0.00 3.41
501 550 0.035739 GTTCTAGCGTCCCCACCAAA 59.964 55.000 0.00 0.00 0.00 3.28
516 565 1.003718 GTGGGCAGGTTAGCGTTCT 60.004 57.895 0.00 0.00 34.64 3.01
588 637 8.226819 TGTTGGATTGTTTGTACAAGAACATA 57.773 30.769 12.65 6.06 46.71 2.29
726 853 6.097412 ACTTCTGCAAGGAGATTTGAAACTTT 59.903 34.615 0.00 0.00 44.80 2.66
774 902 1.271543 TGTTCCAGGAGCCTTCATGTG 60.272 52.381 0.00 0.00 33.37 3.21
775 903 1.067295 TGTTCCAGGAGCCTTCATGT 58.933 50.000 0.00 0.00 33.37 3.21
981 1662 5.125100 TCATTTTTACTGCTTTGCTCCTG 57.875 39.130 0.00 0.00 0.00 3.86
1245 2050 1.470098 CAATAGCTGGTTGTCTGCACC 59.530 52.381 0.00 0.00 41.96 5.01
1395 2200 8.806429 TTATCAATTCCTCACTCTTAAATGCA 57.194 30.769 0.00 0.00 0.00 3.96
1437 2242 7.562135 ACAGAGGAAACAAAAGTCAGTAGTTA 58.438 34.615 0.00 0.00 0.00 2.24
1547 2352 9.898152 TTTGTGAATGTTATGATAGTATGGACA 57.102 29.630 0.00 0.00 0.00 4.02
1676 2493 8.533569 TGAAAGAAATTAGTTCCAAGTTTCCT 57.466 30.769 3.64 0.00 36.86 3.36
1885 2712 9.606631 GAGGGAGTATGATATCATGGAAATTAC 57.393 37.037 25.44 14.64 37.15 1.89
2010 2837 2.565391 TCATACGTGAAAGGAGCTTCCA 59.435 45.455 0.00 0.00 39.61 3.53
2011 2838 3.247006 TCATACGTGAAAGGAGCTTCC 57.753 47.619 0.00 0.00 36.58 3.46
2012 2839 5.803020 AATTCATACGTGAAAGGAGCTTC 57.197 39.130 0.00 0.00 46.67 3.86
2013 2840 5.705441 TCAAATTCATACGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 46.67 3.74
2014 2841 5.122396 GTCAAATTCATACGTGAAAGGAGCT 59.878 40.000 0.00 0.00 46.67 4.09
2015 2842 5.324697 GTCAAATTCATACGTGAAAGGAGC 58.675 41.667 0.00 0.00 46.67 4.70
2016 2843 5.445939 CCGTCAAATTCATACGTGAAAGGAG 60.446 44.000 0.00 0.00 46.67 3.69
2017 2844 4.390603 CCGTCAAATTCATACGTGAAAGGA 59.609 41.667 0.00 0.00 46.67 3.36
2018 2845 4.153475 ACCGTCAAATTCATACGTGAAAGG 59.847 41.667 0.00 0.00 46.67 3.11
2019 2846 5.277601 ACCGTCAAATTCATACGTGAAAG 57.722 39.130 0.00 0.00 46.67 2.62
2020 2847 6.673556 GCATACCGTCAAATTCATACGTGAAA 60.674 38.462 0.00 0.00 46.67 2.69
2022 2849 4.269123 GCATACCGTCAAATTCATACGTGA 59.731 41.667 0.00 0.00 34.90 4.35
2023 2850 4.270084 AGCATACCGTCAAATTCATACGTG 59.730 41.667 0.00 0.00 34.90 4.49
2024 2851 4.439057 AGCATACCGTCAAATTCATACGT 58.561 39.130 0.00 0.00 34.90 3.57
2025 2852 5.403897 AAGCATACCGTCAAATTCATACG 57.596 39.130 0.00 0.00 36.42 3.06
2026 2853 6.468956 CACAAAGCATACCGTCAAATTCATAC 59.531 38.462 0.00 0.00 0.00 2.39
2027 2854 6.150307 ACACAAAGCATACCGTCAAATTCATA 59.850 34.615 0.00 0.00 0.00 2.15
2028 2855 5.048083 ACACAAAGCATACCGTCAAATTCAT 60.048 36.000 0.00 0.00 0.00 2.57
2029 2856 4.277174 ACACAAAGCATACCGTCAAATTCA 59.723 37.500 0.00 0.00 0.00 2.57
2066 2893 8.865001 CGAGGCTAACTTTAGAGCAATAATATC 58.135 37.037 0.00 0.00 40.64 1.63
2093 2920 9.772973 CATATATATAGGGCCTAATGCGTTTTA 57.227 33.333 18.91 2.88 42.61 1.52
2097 2924 6.082031 TCCATATATATAGGGCCTAATGCGT 58.918 40.000 18.91 2.76 42.61 5.24
2098 2925 6.605471 TCCATATATATAGGGCCTAATGCG 57.395 41.667 18.91 10.04 42.61 4.73
2235 3062 2.241430 AGATGGGGGCAAACCTAAGTAC 59.759 50.000 0.00 0.00 40.03 2.73
2272 3099 1.699634 AGCTGTCTCAAAAGGTAGCCA 59.300 47.619 0.00 0.00 34.44 4.75
2993 3828 3.041211 TGCTATCACCCTCAGCAATACT 58.959 45.455 0.00 0.00 42.09 2.12
3072 3907 3.396491 GCAGACATGTTCAAGCTGC 57.604 52.632 17.54 17.54 44.11 5.25
3087 3922 5.361285 ACATACTACTACTGGAAGAAGGCAG 59.639 44.000 0.00 0.00 37.43 4.85
3196 4037 4.262420 GGCATTTTAGAAGCAGGACCAAAA 60.262 41.667 0.00 0.00 0.00 2.44
3291 4136 3.003275 GCAGTTGAATTTCTGTGGTCGAA 59.997 43.478 0.00 0.00 34.57 3.71
3292 4137 2.548057 GCAGTTGAATTTCTGTGGTCGA 59.452 45.455 0.00 0.00 34.57 4.20
3293 4138 2.549754 AGCAGTTGAATTTCTGTGGTCG 59.450 45.455 0.00 0.00 34.57 4.79
3309 4154 3.682858 GCATTTTGCATGATTCAAGCAGT 59.317 39.130 15.30 5.04 44.26 4.40
3358 4203 1.066573 CAACAGGAGTGGAGGCAGTAG 60.067 57.143 0.00 0.00 0.00 2.57
3659 4587 6.701841 GGTTATCGATGAATGTTAGCTGAAGA 59.298 38.462 8.54 0.00 0.00 2.87
3771 4699 3.326747 ACAAAATCCAGAGTACACGAGC 58.673 45.455 0.00 0.00 0.00 5.03
3782 4710 1.247567 ACCTCGCCAACAAAATCCAG 58.752 50.000 0.00 0.00 0.00 3.86
3874 4803 7.975058 CCATCATGTACATTTCAAATGCTGTTA 59.025 33.333 10.21 0.00 0.00 2.41
3895 4824 1.680735 GCATAAATTGACCCGCCATCA 59.319 47.619 0.00 0.00 0.00 3.07
3936 4865 3.492656 GGCCTAATGTTCGCTAGATGACA 60.493 47.826 0.00 0.00 0.00 3.58
3940 4869 1.000955 CCGGCCTAATGTTCGCTAGAT 59.999 52.381 0.00 0.00 0.00 1.98
3995 4924 6.238566 CCAATCATTCTGGTGTCATGACATAC 60.239 42.308 30.10 24.53 43.97 2.39
4041 4972 2.284263 TAGACAGCATCAGAAGCACG 57.716 50.000 0.00 0.00 0.00 5.34
4094 5026 1.067516 GGCAAGCACACAAACACAGAT 59.932 47.619 0.00 0.00 0.00 2.90
4116 5048 6.090088 CCATCTAATCTACAGTTTAGCGATGC 59.910 42.308 0.00 0.00 30.99 3.91
4120 5052 5.844004 ACCCATCTAATCTACAGTTTAGCG 58.156 41.667 3.24 0.00 30.99 4.26
4146 5078 4.803613 GCAAACTAAACCAGGAACAAACAG 59.196 41.667 0.00 0.00 0.00 3.16
4152 5084 1.268625 CCGGCAAACTAAACCAGGAAC 59.731 52.381 0.00 0.00 0.00 3.62
4161 5093 1.881324 GCAACCTTACCGGCAAACTAA 59.119 47.619 0.00 0.00 35.61 2.24
4198 5130 1.557099 TACCACACACTGGCTCTAGG 58.443 55.000 0.00 0.00 45.32 3.02
4201 5133 2.106511 ACAATTACCACACACTGGCTCT 59.893 45.455 0.00 0.00 45.32 4.09
4265 5197 5.221803 ACAAGCAGGTATAGGATCCATGAAG 60.222 44.000 15.82 0.00 0.00 3.02
4276 5208 1.486310 TCAGGCCACAAGCAGGTATAG 59.514 52.381 5.01 0.00 46.50 1.31
4284 5216 1.615392 ACTCAAAATCAGGCCACAAGC 59.385 47.619 5.01 0.00 42.60 4.01
4285 5217 2.886523 TCACTCAAAATCAGGCCACAAG 59.113 45.455 5.01 0.00 0.00 3.16
4287 5219 2.655090 TCACTCAAAATCAGGCCACA 57.345 45.000 5.01 0.00 0.00 4.17
4288 5220 3.760684 AGAATCACTCAAAATCAGGCCAC 59.239 43.478 5.01 0.00 0.00 5.01
4312 5244 6.515832 TGAGATTCACATACGATTATGCTGT 58.484 36.000 0.00 0.00 39.07 4.40
4340 5272 5.774690 TGAAATAGTTTCAGCACTTCCCAAT 59.225 36.000 1.24 0.00 44.21 3.16
4397 5329 9.520515 AGAAAGTAAGAGAATGCAAAGGATAAA 57.479 29.630 0.00 0.00 0.00 1.40
4399 5331 9.823647 CTAGAAAGTAAGAGAATGCAAAGGATA 57.176 33.333 0.00 0.00 0.00 2.59
4400 5332 8.325046 ACTAGAAAGTAAGAGAATGCAAAGGAT 58.675 33.333 0.00 0.00 32.84 3.24
4401 5333 7.604164 CACTAGAAAGTAAGAGAATGCAAAGGA 59.396 37.037 0.00 0.00 33.48 3.36
4430 5362 6.663523 TCAATTGGAGAGAAAACCCTTTATCC 59.336 38.462 5.42 0.00 33.98 2.59
4446 5378 8.526147 ACTGGTTATTCTTTCAATCAATTGGAG 58.474 33.333 5.42 0.00 38.30 3.86
4478 5410 6.371825 CACTTCAAAGGTACAGATAAAGGGAC 59.628 42.308 0.00 0.00 0.00 4.46
4479 5411 6.271391 TCACTTCAAAGGTACAGATAAAGGGA 59.729 38.462 0.00 0.00 0.00 4.20
4480 5412 6.472887 TCACTTCAAAGGTACAGATAAAGGG 58.527 40.000 0.00 0.00 0.00 3.95
4481 5413 7.979444 TTCACTTCAAAGGTACAGATAAAGG 57.021 36.000 0.00 0.00 0.00 3.11
4486 5418 7.497249 GCTGATATTCACTTCAAAGGTACAGAT 59.503 37.037 0.00 0.00 0.00 2.90
4487 5419 6.818644 GCTGATATTCACTTCAAAGGTACAGA 59.181 38.462 0.00 0.00 0.00 3.41
4488 5420 6.820656 AGCTGATATTCACTTCAAAGGTACAG 59.179 38.462 0.00 0.00 0.00 2.74
4489 5421 6.711277 AGCTGATATTCACTTCAAAGGTACA 58.289 36.000 0.00 0.00 0.00 2.90
4490 5422 7.201652 GGAAGCTGATATTCACTTCAAAGGTAC 60.202 40.741 15.28 0.00 36.82 3.34
4491 5423 6.823689 GGAAGCTGATATTCACTTCAAAGGTA 59.176 38.462 15.28 0.00 36.82 3.08
4492 5424 5.649831 GGAAGCTGATATTCACTTCAAAGGT 59.350 40.000 15.28 0.00 36.82 3.50
4493 5425 5.220739 CGGAAGCTGATATTCACTTCAAAGG 60.221 44.000 15.28 4.97 36.82 3.11
4494 5426 5.582269 TCGGAAGCTGATATTCACTTCAAAG 59.418 40.000 15.28 0.00 36.82 2.77
4500 5432 5.282055 TCAATCGGAAGCTGATATTCACT 57.718 39.130 0.00 0.00 0.00 3.41
4502 5434 4.999311 CCATCAATCGGAAGCTGATATTCA 59.001 41.667 0.00 0.00 33.74 2.57
4517 5449 7.333921 CAGGCTGATTTATACTCTCCATCAATC 59.666 40.741 9.42 0.00 0.00 2.67
4520 5452 5.012458 CCAGGCTGATTTATACTCTCCATCA 59.988 44.000 17.94 0.00 0.00 3.07
4521 5453 5.247110 TCCAGGCTGATTTATACTCTCCATC 59.753 44.000 17.94 0.00 0.00 3.51
4522 5454 5.158141 TCCAGGCTGATTTATACTCTCCAT 58.842 41.667 17.94 0.00 0.00 3.41
4523 5455 4.556697 TCCAGGCTGATTTATACTCTCCA 58.443 43.478 17.94 0.00 0.00 3.86
4524 5456 5.552870 TTCCAGGCTGATTTATACTCTCC 57.447 43.478 17.94 0.00 0.00 3.71
4525 5457 6.704050 GTCTTTCCAGGCTGATTTATACTCTC 59.296 42.308 17.94 0.00 0.00 3.20
4526 5458 6.587273 GTCTTTCCAGGCTGATTTATACTCT 58.413 40.000 17.94 0.00 0.00 3.24
4527 5459 5.463724 CGTCTTTCCAGGCTGATTTATACTC 59.536 44.000 17.94 0.00 0.00 2.59
4528 5460 5.128827 TCGTCTTTCCAGGCTGATTTATACT 59.871 40.000 17.94 0.00 0.00 2.12
4529 5461 5.357257 TCGTCTTTCCAGGCTGATTTATAC 58.643 41.667 17.94 5.98 0.00 1.47
4530 5462 5.607939 TCGTCTTTCCAGGCTGATTTATA 57.392 39.130 17.94 0.00 0.00 0.98
4531 5463 4.487714 TCGTCTTTCCAGGCTGATTTAT 57.512 40.909 17.94 0.00 0.00 1.40
4532 5464 3.973206 TCGTCTTTCCAGGCTGATTTA 57.027 42.857 17.94 0.00 0.00 1.40
4533 5465 2.859165 TCGTCTTTCCAGGCTGATTT 57.141 45.000 17.94 0.00 0.00 2.17
4534 5466 3.706594 TCTATCGTCTTTCCAGGCTGATT 59.293 43.478 17.94 0.00 0.00 2.57
4535 5467 3.300388 TCTATCGTCTTTCCAGGCTGAT 58.700 45.455 17.94 0.82 0.00 2.90
4536 5468 2.735151 TCTATCGTCTTTCCAGGCTGA 58.265 47.619 17.94 0.00 0.00 4.26
4537 5469 3.190874 GTTCTATCGTCTTTCCAGGCTG 58.809 50.000 7.75 7.75 0.00 4.85
4538 5470 2.832129 TGTTCTATCGTCTTTCCAGGCT 59.168 45.455 0.00 0.00 0.00 4.58
4539 5471 2.930682 GTGTTCTATCGTCTTTCCAGGC 59.069 50.000 0.00 0.00 0.00 4.85
4540 5472 3.927142 GTGTGTTCTATCGTCTTTCCAGG 59.073 47.826 0.00 0.00 0.00 4.45
4541 5473 4.386049 GTGTGTGTTCTATCGTCTTTCCAG 59.614 45.833 0.00 0.00 0.00 3.86
4542 5474 4.038763 AGTGTGTGTTCTATCGTCTTTCCA 59.961 41.667 0.00 0.00 0.00 3.53
4543 5475 4.557205 AGTGTGTGTTCTATCGTCTTTCC 58.443 43.478 0.00 0.00 0.00 3.13
4544 5476 6.526566 AAAGTGTGTGTTCTATCGTCTTTC 57.473 37.500 0.00 0.00 0.00 2.62
4545 5477 6.920569 AAAAGTGTGTGTTCTATCGTCTTT 57.079 33.333 0.00 0.00 0.00 2.52
4546 5478 8.603242 ATTAAAAGTGTGTGTTCTATCGTCTT 57.397 30.769 0.00 0.00 0.00 3.01
4547 5479 8.495949 CAATTAAAAGTGTGTGTTCTATCGTCT 58.504 33.333 0.00 0.00 0.00 4.18
4548 5480 7.744715 CCAATTAAAAGTGTGTGTTCTATCGTC 59.255 37.037 0.00 0.00 0.00 4.20
4549 5481 7.581476 CCAATTAAAAGTGTGTGTTCTATCGT 58.419 34.615 0.00 0.00 0.00 3.73
4550 5482 6.523201 GCCAATTAAAAGTGTGTGTTCTATCG 59.477 38.462 0.00 0.00 0.00 2.92
4551 5483 7.367285 TGCCAATTAAAAGTGTGTGTTCTATC 58.633 34.615 0.00 0.00 0.00 2.08
4552 5484 7.283625 TGCCAATTAAAAGTGTGTGTTCTAT 57.716 32.000 0.00 0.00 0.00 1.98
4553 5485 6.701145 TGCCAATTAAAAGTGTGTGTTCTA 57.299 33.333 0.00 0.00 0.00 2.10
4554 5486 5.590530 TGCCAATTAAAAGTGTGTGTTCT 57.409 34.783 0.00 0.00 0.00 3.01
4555 5487 6.654793 TTTGCCAATTAAAAGTGTGTGTTC 57.345 33.333 0.00 0.00 0.00 3.18
4609 5541 2.298610 AGATTCATGGTGCATCTGCTG 58.701 47.619 0.00 0.00 42.66 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.