Multiple sequence alignment - TraesCS3A01G449800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G449800 chr3A 100.000 2594 0 0 1 2594 688966093 688963500 0.000000e+00 4791.0
1 TraesCS3A01G449800 chr3A 86.005 886 87 23 726 1604 688978281 688977426 0.000000e+00 915.0
2 TraesCS3A01G449800 chr3A 91.572 617 39 10 994 1605 688987042 688986434 0.000000e+00 839.0
3 TraesCS3A01G449800 chr3A 86.036 666 77 11 948 1606 688992995 688993651 0.000000e+00 701.0
4 TraesCS3A01G449800 chr3A 90.179 448 18 13 2148 2594 695610148 695610570 6.270000e-156 560.0
5 TraesCS3A01G449800 chr3D 91.244 868 44 9 1 846 552531654 552530797 0.000000e+00 1153.0
6 TraesCS3A01G449800 chr3D 88.290 854 81 12 850 1692 552530684 552529839 0.000000e+00 1005.0
7 TraesCS3A01G449800 chr3D 90.939 618 41 9 999 1604 552576281 552575667 0.000000e+00 817.0
8 TraesCS3A01G449800 chr3D 87.237 666 67 13 948 1600 552727742 552728402 0.000000e+00 743.0
9 TraesCS3A01G449800 chr3D 89.971 349 19 8 1684 2023 552528797 552528456 1.100000e-118 436.0
10 TraesCS3A01G449800 chr3B 91.011 623 42 11 994 1611 733257671 733257058 0.000000e+00 828.0
11 TraesCS3A01G449800 chr3B 82.743 904 114 22 724 1604 733079957 733080841 0.000000e+00 767.0
12 TraesCS3A01G449800 chr3B 82.580 907 111 26 721 1606 733349587 733350467 0.000000e+00 756.0
13 TraesCS3A01G449800 chr3B 95.745 47 2 0 551 597 733349409 733349455 2.770000e-10 76.8
14 TraesCS3A01G449800 chr3B 96.970 33 1 0 2145 2177 697088081 697088049 3.610000e-04 56.5
15 TraesCS3A01G449800 chr4A 94.469 452 23 2 2143 2594 6487603 6488052 0.000000e+00 695.0
16 TraesCS3A01G449800 chr1B 90.222 450 17 7 2146 2594 639057671 639057248 1.740000e-156 562.0
17 TraesCS3A01G449800 chr7A 94.949 297 13 2 2145 2440 22174148 22174443 5.060000e-127 464.0
18 TraesCS3A01G449800 chr7A 94.479 163 4 2 2434 2594 22180220 22180379 1.990000e-61 246.0
19 TraesCS3A01G449800 chr1A 88.421 95 8 2 2144 2237 497374148 497374056 7.590000e-21 111.0
20 TraesCS3A01G449800 chr6B 100.000 32 0 0 2144 2175 642871729 642871760 2.790000e-05 60.2
21 TraesCS3A01G449800 chr6B 100.000 30 0 0 2144 2173 364444123 364444094 3.610000e-04 56.5
22 TraesCS3A01G449800 chr6B 96.970 33 1 0 2145 2177 580286908 580286876 3.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G449800 chr3A 688963500 688966093 2593 True 4791.000000 4791 100.0000 1 2594 1 chr3A.!!$R1 2593
1 TraesCS3A01G449800 chr3A 688977426 688978281 855 True 915.000000 915 86.0050 726 1604 1 chr3A.!!$R2 878
2 TraesCS3A01G449800 chr3A 688986434 688987042 608 True 839.000000 839 91.5720 994 1605 1 chr3A.!!$R3 611
3 TraesCS3A01G449800 chr3A 688992995 688993651 656 False 701.000000 701 86.0360 948 1606 1 chr3A.!!$F1 658
4 TraesCS3A01G449800 chr3D 552528456 552531654 3198 True 864.666667 1153 89.8350 1 2023 3 chr3D.!!$R2 2022
5 TraesCS3A01G449800 chr3D 552575667 552576281 614 True 817.000000 817 90.9390 999 1604 1 chr3D.!!$R1 605
6 TraesCS3A01G449800 chr3D 552727742 552728402 660 False 743.000000 743 87.2370 948 1600 1 chr3D.!!$F1 652
7 TraesCS3A01G449800 chr3B 733257058 733257671 613 True 828.000000 828 91.0110 994 1611 1 chr3B.!!$R2 617
8 TraesCS3A01G449800 chr3B 733079957 733080841 884 False 767.000000 767 82.7430 724 1604 1 chr3B.!!$F1 880
9 TraesCS3A01G449800 chr3B 733349409 733350467 1058 False 416.400000 756 89.1625 551 1606 2 chr3B.!!$F2 1055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 798 0.312416 ATCGGATGCTGACGTAGAGC 59.688 55.0 11.31 11.31 36.95 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 3429 0.248458 ACAAGGTTTTCGCAGCAACG 60.248 50.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.812922 CGGCTGCTCCACACTGATC 60.813 63.158 0.00 0.00 34.01 2.92
82 83 4.455533 ACTGATCTGTACGTACCGTAAACA 59.544 41.667 22.43 13.29 43.95 2.83
95 96 5.421212 ACCGTAAACACGCAAAGAAATTA 57.579 34.783 0.00 0.00 0.00 1.40
99 100 7.016466 CCGTAAACACGCAAAGAAATTATGTA 58.984 34.615 0.00 0.00 0.00 2.29
102 103 5.950758 ACACGCAAAGAAATTATGTACCA 57.049 34.783 0.00 0.00 0.00 3.25
166 167 3.373830 AGCTTTCTCTCTGATGGCTACT 58.626 45.455 0.00 0.00 33.46 2.57
169 170 3.678965 TTCTCTCTGATGGCTACTCCT 57.321 47.619 0.00 0.00 35.26 3.69
173 174 6.455690 TCTCTCTGATGGCTACTCCTATTA 57.544 41.667 0.00 0.00 35.26 0.98
180 181 9.249053 TCTGATGGCTACTCCTATTAATTCTAG 57.751 37.037 0.00 0.00 35.26 2.43
182 183 7.400339 TGATGGCTACTCCTATTAATTCTAGGG 59.600 40.741 12.01 7.23 37.05 3.53
184 185 7.772686 TGGCTACTCCTATTAATTCTAGGGTA 58.227 38.462 12.01 11.45 37.05 3.69
194 195 6.889301 TTAATTCTAGGGTACATCGATCGT 57.111 37.500 15.94 0.01 0.00 3.73
195 196 5.786264 AATTCTAGGGTACATCGATCGTT 57.214 39.130 15.94 3.47 0.00 3.85
211 212 1.003331 TCGTTGCCGTGTGTTGATTTC 60.003 47.619 0.00 0.00 35.01 2.17
213 214 1.018148 TTGCCGTGTGTTGATTTCGT 58.982 45.000 0.00 0.00 0.00 3.85
231 232 7.384115 TGATTTCGTCTCGTTTCAGTAGAAAAT 59.616 33.333 0.00 0.00 44.75 1.82
288 289 3.431626 CCACGGAGCAATGGTGATTACTA 60.432 47.826 0.00 0.00 33.58 1.82
292 293 6.650807 CACGGAGCAATGGTGATTACTAATAT 59.349 38.462 0.00 0.00 33.58 1.28
314 315 4.387026 AAATGAGTCTCCCATTTGTCCA 57.613 40.909 0.00 0.00 41.20 4.02
315 316 4.387026 AATGAGTCTCCCATTTGTCCAA 57.613 40.909 0.00 0.00 30.72 3.53
336 337 5.632347 CCAAAGAGCATGAAACTGATTGAAC 59.368 40.000 0.00 0.00 0.00 3.18
344 345 6.346359 GCATGAAACTGATTGAACAAAGCTTC 60.346 38.462 0.00 0.00 0.00 3.86
348 349 5.695851 ACTGATTGAACAAAGCTTCGATT 57.304 34.783 0.00 0.00 0.00 3.34
356 357 7.008440 TGAACAAAGCTTCGATTATGATGAG 57.992 36.000 0.00 0.00 0.00 2.90
383 385 5.379706 AATGTAGCTTGCTCTTAGGGATT 57.620 39.130 0.00 0.00 0.00 3.01
463 465 4.688021 GGCTAACATCAGAGAAGGTGTAG 58.312 47.826 0.00 0.00 0.00 2.74
464 466 4.160626 GGCTAACATCAGAGAAGGTGTAGT 59.839 45.833 0.00 0.00 0.00 2.73
465 467 5.105752 GCTAACATCAGAGAAGGTGTAGTG 58.894 45.833 0.00 0.00 0.00 2.74
466 468 5.336849 GCTAACATCAGAGAAGGTGTAGTGT 60.337 44.000 0.00 0.00 0.00 3.55
467 469 6.127703 GCTAACATCAGAGAAGGTGTAGTGTA 60.128 42.308 0.00 0.00 0.00 2.90
512 514 3.002348 GCCTGCTTAGTTAATTAGGTGCG 59.998 47.826 0.00 0.00 0.00 5.34
526 528 3.802948 AGGTGCGAGTACTTATCCTTG 57.197 47.619 0.00 0.00 0.00 3.61
609 611 2.949177 TTCTGACTAGCAGCCCAAAA 57.051 45.000 8.72 0.00 44.52 2.44
635 647 3.249080 ACCATCCGTAGTTCGTTTTGTTG 59.751 43.478 0.00 0.00 37.94 3.33
691 704 3.181461 GCCTGTCTCATGTAAGCACCTAT 60.181 47.826 0.00 0.00 0.00 2.57
703 736 6.318628 TGTAAGCACCTATAAATTTGTTGCG 58.681 36.000 0.00 0.00 0.00 4.85
744 777 3.595173 AGCACTATGTAAACGTGATGCA 58.405 40.909 12.42 0.00 32.66 3.96
759 792 0.659427 ATGCAAATCGGATGCTGACG 59.341 50.000 5.30 0.00 44.14 4.35
760 793 0.673333 TGCAAATCGGATGCTGACGT 60.673 50.000 5.30 0.00 44.14 4.34
761 794 1.286501 GCAAATCGGATGCTGACGTA 58.713 50.000 0.00 0.00 40.64 3.57
765 798 0.312416 ATCGGATGCTGACGTAGAGC 59.688 55.000 11.31 11.31 36.95 4.09
847 896 5.299148 ACGCACACACTACCATTAACTAAA 58.701 37.500 0.00 0.00 0.00 1.85
848 897 5.178067 ACGCACACACTACCATTAACTAAAC 59.822 40.000 0.00 0.00 0.00 2.01
977 1137 1.891616 CAGCAGAGCAGAGCAGAGA 59.108 57.895 0.00 0.00 0.00 3.10
990 1153 5.167121 CAGAGCAGAGAAATCTTCTTCGAA 58.833 41.667 0.00 0.00 40.87 3.71
992 1155 3.923461 AGCAGAGAAATCTTCTTCGAACG 59.077 43.478 0.00 0.00 40.87 3.95
1039 1229 4.767255 CTGCCGCGGCCTCTTCTT 62.767 66.667 44.42 0.00 41.09 2.52
1042 1235 2.202810 CCGCGGCCTCTTCTTCTC 60.203 66.667 14.67 0.00 0.00 2.87
1046 1239 1.519719 CGGCCTCTTCTTCTCCCTG 59.480 63.158 0.00 0.00 0.00 4.45
1060 1253 3.465403 CCTGCTCCGGAGACCAGG 61.465 72.222 31.57 31.57 0.00 4.45
1099 1304 0.037326 GGTGTGGATGAAGTCGCTGA 60.037 55.000 0.00 0.00 0.00 4.26
1608 1816 4.718940 CATGTGATGGATGCATGCATAT 57.281 40.909 32.27 22.86 39.04 1.78
1609 1817 4.423732 CATGTGATGGATGCATGCATATG 58.576 43.478 32.27 25.10 39.04 1.78
1631 1839 0.392998 TGGAGCGGCAATCTTCTTCC 60.393 55.000 1.45 0.00 0.00 3.46
1636 1844 1.068541 GCGGCAATCTTCTTCCGTTTT 60.069 47.619 0.00 0.00 43.45 2.43
1650 1858 1.984990 CCGTTTTCATGCGGTTTCATG 59.015 47.619 1.71 0.00 43.84 3.07
1660 1868 2.550606 TGCGGTTTCATGTCCAAACTAC 59.449 45.455 8.03 2.92 34.66 2.73
1669 1877 3.823281 TGTCCAAACTACGAAGTTCCA 57.177 42.857 0.00 0.00 45.37 3.53
1671 1879 4.062293 TGTCCAAACTACGAAGTTCCATG 58.938 43.478 0.00 0.00 45.37 3.66
1673 1881 5.221481 TGTCCAAACTACGAAGTTCCATGTA 60.221 40.000 0.00 0.00 45.37 2.29
1674 1882 5.347907 GTCCAAACTACGAAGTTCCATGTAG 59.652 44.000 12.32 12.32 45.37 2.74
1675 1883 4.092968 CCAAACTACGAAGTTCCATGTAGC 59.907 45.833 13.32 0.00 45.37 3.58
1676 1884 4.803098 AACTACGAAGTTCCATGTAGCT 57.197 40.909 13.32 0.00 42.42 3.32
1677 1885 4.111375 ACTACGAAGTTCCATGTAGCTG 57.889 45.455 13.32 0.00 37.78 4.24
1678 1886 3.762288 ACTACGAAGTTCCATGTAGCTGA 59.238 43.478 13.32 0.00 37.78 4.26
1679 1887 3.238108 ACGAAGTTCCATGTAGCTGAG 57.762 47.619 0.00 0.00 37.78 3.35
1680 1888 1.929836 CGAAGTTCCATGTAGCTGAGC 59.070 52.381 0.00 0.00 0.00 4.26
1682 1890 1.279496 AGTTCCATGTAGCTGAGCCA 58.721 50.000 0.00 0.00 0.00 4.75
1701 2960 3.872696 CCAGAAAGTTTTTGCCCAAACT 58.127 40.909 4.84 4.84 46.85 2.66
1705 2964 4.222810 AGAAAGTTTTTGCCCAAACTGAGT 59.777 37.500 10.30 1.48 44.62 3.41
1708 2967 4.020543 AGTTTTTGCCCAAACTGAGTACA 58.979 39.130 9.06 0.00 43.88 2.90
1711 2970 2.198827 TGCCCAAACTGAGTACATGG 57.801 50.000 0.00 5.33 0.00 3.66
1737 2996 6.033091 CGACTCTTTTTGGTGTGTGTTTTTAC 59.967 38.462 0.00 0.00 0.00 2.01
1874 3135 6.539649 TTGGTAATTTGACTCTTTCGTGAG 57.460 37.500 0.00 0.00 39.78 3.51
1889 3150 7.682824 TCTTTCGTGAGATAAACTCTACTACG 58.317 38.462 0.00 0.00 45.13 3.51
1914 3175 5.317808 TGATGATACTGTAGGAGAGGTAGC 58.682 45.833 0.00 0.00 0.00 3.58
1947 3211 8.732413 TTGCGGTATTTAGTTATACGTGATAG 57.268 34.615 0.00 0.00 32.85 2.08
1950 3214 8.233190 GCGGTATTTAGTTATACGTGATAGACT 58.767 37.037 0.00 0.00 32.85 3.24
2035 3301 4.913335 ATCATGATCAAGCACAATGACC 57.087 40.909 1.18 0.00 0.00 4.02
2036 3302 3.688235 TCATGATCAAGCACAATGACCA 58.312 40.909 0.00 0.00 0.00 4.02
2037 3303 4.080687 TCATGATCAAGCACAATGACCAA 58.919 39.130 0.00 0.00 0.00 3.67
2038 3304 3.921119 TGATCAAGCACAATGACCAAC 57.079 42.857 0.00 0.00 0.00 3.77
2039 3305 2.226200 TGATCAAGCACAATGACCAACG 59.774 45.455 0.00 0.00 0.00 4.10
2040 3306 0.950836 TCAAGCACAATGACCAACGG 59.049 50.000 0.00 0.00 0.00 4.44
2041 3307 0.950836 CAAGCACAATGACCAACGGA 59.049 50.000 0.00 0.00 0.00 4.69
2042 3308 1.069022 CAAGCACAATGACCAACGGAG 60.069 52.381 0.00 0.00 0.00 4.63
2043 3309 1.210155 GCACAATGACCAACGGAGC 59.790 57.895 0.00 0.00 0.00 4.70
2044 3310 1.237285 GCACAATGACCAACGGAGCT 61.237 55.000 0.00 0.00 0.00 4.09
2045 3311 1.943968 GCACAATGACCAACGGAGCTA 60.944 52.381 0.00 0.00 0.00 3.32
2046 3312 2.422597 CACAATGACCAACGGAGCTAA 58.577 47.619 0.00 0.00 0.00 3.09
2047 3313 2.811431 CACAATGACCAACGGAGCTAAA 59.189 45.455 0.00 0.00 0.00 1.85
2048 3314 2.812011 ACAATGACCAACGGAGCTAAAC 59.188 45.455 0.00 0.00 0.00 2.01
2049 3315 3.074412 CAATGACCAACGGAGCTAAACT 58.926 45.455 0.00 0.00 0.00 2.66
2050 3316 2.163818 TGACCAACGGAGCTAAACTG 57.836 50.000 0.00 0.00 0.00 3.16
2051 3317 1.689813 TGACCAACGGAGCTAAACTGA 59.310 47.619 0.00 0.00 0.00 3.41
2052 3318 2.067013 GACCAACGGAGCTAAACTGAC 58.933 52.381 0.00 0.00 0.00 3.51
2053 3319 1.414919 ACCAACGGAGCTAAACTGACA 59.585 47.619 0.00 0.00 0.00 3.58
2054 3320 2.158871 ACCAACGGAGCTAAACTGACAA 60.159 45.455 0.00 0.00 0.00 3.18
2055 3321 2.875933 CCAACGGAGCTAAACTGACAAA 59.124 45.455 0.00 0.00 0.00 2.83
2056 3322 3.058914 CCAACGGAGCTAAACTGACAAAG 60.059 47.826 0.00 0.00 0.00 2.77
2057 3323 3.470645 ACGGAGCTAAACTGACAAAGT 57.529 42.857 0.00 0.00 42.60 2.66
2058 3324 3.131396 ACGGAGCTAAACTGACAAAGTG 58.869 45.455 0.00 0.00 39.81 3.16
2059 3325 3.181469 ACGGAGCTAAACTGACAAAGTGA 60.181 43.478 0.00 0.00 39.81 3.41
2060 3326 3.430218 CGGAGCTAAACTGACAAAGTGAG 59.570 47.826 0.00 0.00 39.81 3.51
2061 3327 3.748568 GGAGCTAAACTGACAAAGTGAGG 59.251 47.826 0.00 0.00 39.81 3.86
2062 3328 3.142174 AGCTAAACTGACAAAGTGAGGC 58.858 45.455 0.00 0.00 39.81 4.70
2063 3329 2.878406 GCTAAACTGACAAAGTGAGGCA 59.122 45.455 0.00 0.00 39.81 4.75
2064 3330 3.058639 GCTAAACTGACAAAGTGAGGCAG 60.059 47.826 0.00 0.00 39.81 4.85
2065 3331 3.281727 AAACTGACAAAGTGAGGCAGA 57.718 42.857 2.60 0.00 39.81 4.26
2066 3332 3.498774 AACTGACAAAGTGAGGCAGAT 57.501 42.857 2.60 0.00 39.81 2.90
2067 3333 4.623932 AACTGACAAAGTGAGGCAGATA 57.376 40.909 2.60 0.00 39.81 1.98
2068 3334 3.931578 ACTGACAAAGTGAGGCAGATAC 58.068 45.455 2.60 0.00 37.88 2.24
2069 3335 3.265791 CTGACAAAGTGAGGCAGATACC 58.734 50.000 0.00 0.00 0.00 2.73
2070 3336 2.906389 TGACAAAGTGAGGCAGATACCT 59.094 45.455 0.00 0.00 45.04 3.08
2071 3337 4.093743 TGACAAAGTGAGGCAGATACCTA 58.906 43.478 0.00 0.00 41.32 3.08
2072 3338 4.081642 TGACAAAGTGAGGCAGATACCTAC 60.082 45.833 0.00 0.00 41.32 3.18
2073 3339 4.097418 ACAAAGTGAGGCAGATACCTACT 58.903 43.478 0.00 0.00 41.32 2.57
2074 3340 4.532521 ACAAAGTGAGGCAGATACCTACTT 59.467 41.667 0.00 0.00 41.32 2.24
2075 3341 5.013183 ACAAAGTGAGGCAGATACCTACTTT 59.987 40.000 0.00 0.00 41.32 2.66
2076 3342 6.212791 ACAAAGTGAGGCAGATACCTACTTTA 59.787 38.462 13.14 0.00 41.32 1.85
2077 3343 6.472686 AAGTGAGGCAGATACCTACTTTAG 57.527 41.667 0.00 0.00 41.32 1.85
2078 3344 5.767670 AGTGAGGCAGATACCTACTTTAGA 58.232 41.667 0.00 0.00 41.32 2.10
2079 3345 5.595133 AGTGAGGCAGATACCTACTTTAGAC 59.405 44.000 0.00 0.00 41.32 2.59
2080 3346 5.360144 GTGAGGCAGATACCTACTTTAGACA 59.640 44.000 0.00 0.00 41.32 3.41
2081 3347 5.360144 TGAGGCAGATACCTACTTTAGACAC 59.640 44.000 0.00 0.00 41.32 3.67
2082 3348 5.269991 AGGCAGATACCTACTTTAGACACA 58.730 41.667 0.00 0.00 38.67 3.72
2083 3349 5.361285 AGGCAGATACCTACTTTAGACACAG 59.639 44.000 0.00 0.00 38.67 3.66
2084 3350 5.360144 GGCAGATACCTACTTTAGACACAGA 59.640 44.000 0.00 0.00 0.00 3.41
2085 3351 6.041069 GGCAGATACCTACTTTAGACACAGAT 59.959 42.308 0.00 0.00 0.00 2.90
2086 3352 7.230913 GGCAGATACCTACTTTAGACACAGATA 59.769 40.741 0.00 0.00 0.00 1.98
2087 3353 8.630917 GCAGATACCTACTTTAGACACAGATAA 58.369 37.037 0.00 0.00 0.00 1.75
2129 3395 9.841880 TGCATTAGACTTATTATACGAGATGAC 57.158 33.333 0.00 0.00 0.00 3.06
2133 3399 6.915349 AGACTTATTATACGAGATGACTGCC 58.085 40.000 0.00 0.00 0.00 4.85
2134 3400 6.026947 ACTTATTATACGAGATGACTGCCC 57.973 41.667 0.00 0.00 0.00 5.36
2135 3401 5.775701 ACTTATTATACGAGATGACTGCCCT 59.224 40.000 0.00 0.00 0.00 5.19
2136 3402 6.946583 ACTTATTATACGAGATGACTGCCCTA 59.053 38.462 0.00 0.00 0.00 3.53
2137 3403 5.646577 ATTATACGAGATGACTGCCCTAC 57.353 43.478 0.00 0.00 0.00 3.18
2138 3404 2.730934 TACGAGATGACTGCCCTACT 57.269 50.000 0.00 0.00 0.00 2.57
2139 3405 1.853963 ACGAGATGACTGCCCTACTT 58.146 50.000 0.00 0.00 0.00 2.24
2140 3406 1.478510 ACGAGATGACTGCCCTACTTG 59.521 52.381 0.00 0.00 0.00 3.16
2141 3407 1.202463 CGAGATGACTGCCCTACTTGG 60.202 57.143 0.00 0.00 0.00 3.61
2158 3424 8.068892 CCTACTTGGGTAACTAGATGATATCC 57.931 42.308 0.00 0.00 0.00 2.59
2159 3425 6.936968 ACTTGGGTAACTAGATGATATCCC 57.063 41.667 0.00 0.00 34.77 3.85
2160 3426 5.480772 ACTTGGGTAACTAGATGATATCCCG 59.519 44.000 0.00 0.00 36.75 5.14
2161 3427 3.767673 TGGGTAACTAGATGATATCCCGC 59.232 47.826 0.00 0.00 36.75 6.13
2162 3428 3.181489 GGGTAACTAGATGATATCCCGCG 60.181 52.174 0.00 0.00 0.00 6.46
2163 3429 2.656560 AACTAGATGATATCCCGCGC 57.343 50.000 0.00 0.00 0.00 6.86
2164 3430 0.452184 ACTAGATGATATCCCGCGCG 59.548 55.000 25.67 25.67 0.00 6.86
2165 3431 0.452184 CTAGATGATATCCCGCGCGT 59.548 55.000 29.95 13.36 0.00 6.01
2166 3432 0.885879 TAGATGATATCCCGCGCGTT 59.114 50.000 29.95 15.46 0.00 4.84
2167 3433 0.667487 AGATGATATCCCGCGCGTTG 60.667 55.000 29.95 19.43 0.00 4.10
2168 3434 2.227968 GATGATATCCCGCGCGTTGC 62.228 60.000 29.95 11.83 41.47 4.17
2169 3435 2.661866 GATATCCCGCGCGTTGCT 60.662 61.111 29.95 13.39 43.27 3.91
2170 3436 2.943345 GATATCCCGCGCGTTGCTG 61.943 63.158 29.95 12.82 43.27 4.41
2179 3445 2.331451 GCGTTGCTGCGAAAACCT 59.669 55.556 4.77 0.00 0.00 3.50
2180 3446 1.299089 GCGTTGCTGCGAAAACCTT 60.299 52.632 4.77 0.00 0.00 3.50
2181 3447 1.539776 GCGTTGCTGCGAAAACCTTG 61.540 55.000 4.77 0.00 0.00 3.61
2182 3448 0.248458 CGTTGCTGCGAAAACCTTGT 60.248 50.000 0.00 0.00 0.00 3.16
2183 3449 1.797348 CGTTGCTGCGAAAACCTTGTT 60.797 47.619 0.00 0.00 0.00 2.83
2184 3450 2.539953 CGTTGCTGCGAAAACCTTGTTA 60.540 45.455 0.00 0.00 0.00 2.41
2185 3451 3.440228 GTTGCTGCGAAAACCTTGTTAA 58.560 40.909 0.00 0.00 0.00 2.01
2186 3452 3.784701 TGCTGCGAAAACCTTGTTAAA 57.215 38.095 0.00 0.00 0.00 1.52
2187 3453 4.111375 TGCTGCGAAAACCTTGTTAAAA 57.889 36.364 0.00 0.00 0.00 1.52
2188 3454 4.495422 TGCTGCGAAAACCTTGTTAAAAA 58.505 34.783 0.00 0.00 0.00 1.94
2189 3455 5.112686 TGCTGCGAAAACCTTGTTAAAAAT 58.887 33.333 0.00 0.00 0.00 1.82
2190 3456 5.582665 TGCTGCGAAAACCTTGTTAAAAATT 59.417 32.000 0.00 0.00 0.00 1.82
2191 3457 6.092807 TGCTGCGAAAACCTTGTTAAAAATTT 59.907 30.769 0.00 0.00 0.00 1.82
2192 3458 6.410625 GCTGCGAAAACCTTGTTAAAAATTTG 59.589 34.615 0.00 0.00 0.00 2.32
2193 3459 7.365840 TGCGAAAACCTTGTTAAAAATTTGT 57.634 28.000 0.00 0.00 0.00 2.83
2194 3460 8.475331 TGCGAAAACCTTGTTAAAAATTTGTA 57.525 26.923 0.00 0.00 0.00 2.41
2195 3461 9.099454 TGCGAAAACCTTGTTAAAAATTTGTAT 57.901 25.926 0.00 0.00 0.00 2.29
2217 3483 9.899661 TGTATAATAGGTGCTACAAAATGAACT 57.100 29.630 0.00 0.00 0.00 3.01
2222 3488 9.908152 AATAGGTGCTACAAAATGAACTAAAAC 57.092 29.630 0.00 0.00 0.00 2.43
2223 3489 7.582667 AGGTGCTACAAAATGAACTAAAACT 57.417 32.000 0.00 0.00 0.00 2.66
2224 3490 8.685838 AGGTGCTACAAAATGAACTAAAACTA 57.314 30.769 0.00 0.00 0.00 2.24
2225 3491 9.127277 AGGTGCTACAAAATGAACTAAAACTAA 57.873 29.630 0.00 0.00 0.00 2.24
2226 3492 9.738832 GGTGCTACAAAATGAACTAAAACTAAA 57.261 29.630 0.00 0.00 0.00 1.85
2238 3504 9.745880 TGAACTAAAACTAAAACAACACAAACA 57.254 25.926 0.00 0.00 0.00 2.83
2374 3640 9.899661 AACATTAACTACATAGGTATTCTTGCA 57.100 29.630 0.00 0.00 0.00 4.08
2375 3641 9.547753 ACATTAACTACATAGGTATTCTTGCAG 57.452 33.333 0.00 0.00 0.00 4.41
2376 3642 8.499162 CATTAACTACATAGGTATTCTTGCAGC 58.501 37.037 0.00 0.00 0.00 5.25
2377 3643 5.614324 ACTACATAGGTATTCTTGCAGCA 57.386 39.130 0.00 0.00 0.00 4.41
2378 3644 6.179906 ACTACATAGGTATTCTTGCAGCAT 57.820 37.500 0.00 0.00 0.00 3.79
2379 3645 6.595682 ACTACATAGGTATTCTTGCAGCATT 58.404 36.000 0.00 0.00 0.00 3.56
2380 3646 6.708054 ACTACATAGGTATTCTTGCAGCATTC 59.292 38.462 0.00 0.00 0.00 2.67
2381 3647 5.439721 ACATAGGTATTCTTGCAGCATTCA 58.560 37.500 0.00 0.00 0.00 2.57
2382 3648 5.887598 ACATAGGTATTCTTGCAGCATTCAA 59.112 36.000 0.00 0.00 0.00 2.69
2383 3649 4.708726 AGGTATTCTTGCAGCATTCAAC 57.291 40.909 0.00 0.00 0.00 3.18
2384 3650 4.081406 AGGTATTCTTGCAGCATTCAACA 58.919 39.130 0.00 0.00 0.00 3.33
2385 3651 4.082571 AGGTATTCTTGCAGCATTCAACAC 60.083 41.667 0.00 0.00 0.00 3.32
2386 3652 4.321156 GGTATTCTTGCAGCATTCAACACA 60.321 41.667 0.00 0.00 0.00 3.72
2387 3653 4.530710 ATTCTTGCAGCATTCAACACAT 57.469 36.364 0.00 0.00 0.00 3.21
2388 3654 3.291809 TCTTGCAGCATTCAACACATG 57.708 42.857 0.00 0.00 0.00 3.21
2389 3655 1.724623 CTTGCAGCATTCAACACATGC 59.275 47.619 0.00 0.00 46.39 4.06
2394 3660 1.609932 GCATTCAACACATGCTGTCG 58.390 50.000 0.00 0.00 43.26 4.35
2395 3661 1.197492 GCATTCAACACATGCTGTCGA 59.803 47.619 0.00 0.00 43.26 4.20
2396 3662 2.159476 GCATTCAACACATGCTGTCGAT 60.159 45.455 0.00 0.00 43.26 3.59
2397 3663 3.422655 CATTCAACACATGCTGTCGATG 58.577 45.455 0.00 0.00 30.29 3.84
2398 3664 2.453983 TCAACACATGCTGTCGATGA 57.546 45.000 0.00 0.00 30.29 2.92
2399 3665 2.068519 TCAACACATGCTGTCGATGAC 58.931 47.619 0.00 0.00 30.29 3.06
2400 3666 1.799994 CAACACATGCTGTCGATGACA 59.200 47.619 0.00 0.00 40.50 3.58
2401 3667 2.168326 ACACATGCTGTCGATGACAA 57.832 45.000 0.89 0.00 42.26 3.18
2402 3668 2.703416 ACACATGCTGTCGATGACAAT 58.297 42.857 0.89 0.00 42.26 2.71
2403 3669 3.860641 ACACATGCTGTCGATGACAATA 58.139 40.909 0.89 0.00 42.26 1.90
2404 3670 3.618594 ACACATGCTGTCGATGACAATAC 59.381 43.478 0.89 0.00 42.26 1.89
2405 3671 3.001634 CACATGCTGTCGATGACAATACC 59.998 47.826 0.89 0.00 42.26 2.73
2406 3672 3.197265 CATGCTGTCGATGACAATACCA 58.803 45.455 0.89 0.00 42.26 3.25
2407 3673 3.326836 TGCTGTCGATGACAATACCAA 57.673 42.857 0.89 0.00 42.26 3.67
2408 3674 3.669536 TGCTGTCGATGACAATACCAAA 58.330 40.909 0.89 0.00 42.26 3.28
2409 3675 4.068599 TGCTGTCGATGACAATACCAAAA 58.931 39.130 0.89 0.00 42.26 2.44
2410 3676 4.517075 TGCTGTCGATGACAATACCAAAAA 59.483 37.500 0.89 0.00 42.26 1.94
2433 3699 8.500753 AAAAAGTCAACACACATACTGTTAGA 57.499 30.769 0.00 0.00 30.48 2.10
2434 3700 7.715265 AAAGTCAACACACATACTGTTAGAG 57.285 36.000 0.00 0.00 30.48 2.43
2435 3701 6.406692 AGTCAACACACATACTGTTAGAGT 57.593 37.500 0.00 0.00 38.88 3.24
2436 3702 6.817184 AGTCAACACACATACTGTTAGAGTT 58.183 36.000 0.00 0.00 35.96 3.01
2437 3703 7.948357 AGTCAACACACATACTGTTAGAGTTA 58.052 34.615 0.00 0.00 35.96 2.24
2438 3704 8.082852 AGTCAACACACATACTGTTAGAGTTAG 58.917 37.037 0.00 0.00 35.96 2.34
2439 3705 7.866393 GTCAACACACATACTGTTAGAGTTAGT 59.134 37.037 0.00 0.00 35.96 2.24
2440 3706 9.070179 TCAACACACATACTGTTAGAGTTAGTA 57.930 33.333 0.00 0.00 35.96 1.82
2441 3707 9.125906 CAACACACATACTGTTAGAGTTAGTAC 57.874 37.037 0.00 0.00 35.96 2.73
2442 3708 8.400184 ACACACATACTGTTAGAGTTAGTACA 57.600 34.615 0.00 0.00 35.96 2.90
2443 3709 9.021807 ACACACATACTGTTAGAGTTAGTACAT 57.978 33.333 0.00 0.00 35.96 2.29
2444 3710 9.290483 CACACATACTGTTAGAGTTAGTACATG 57.710 37.037 0.00 0.00 35.96 3.21
2445 3711 8.467598 ACACATACTGTTAGAGTTAGTACATGG 58.532 37.037 0.00 0.00 35.96 3.66
2446 3712 7.921214 CACATACTGTTAGAGTTAGTACATGGG 59.079 40.741 0.00 0.00 35.96 4.00
2447 3713 5.340439 ACTGTTAGAGTTAGTACATGGGC 57.660 43.478 0.00 0.00 0.00 5.36
2448 3714 5.024118 ACTGTTAGAGTTAGTACATGGGCT 58.976 41.667 0.00 0.00 0.00 5.19
2449 3715 5.105310 ACTGTTAGAGTTAGTACATGGGCTG 60.105 44.000 0.00 0.00 0.00 4.85
2450 3716 5.020795 TGTTAGAGTTAGTACATGGGCTGA 58.979 41.667 0.00 0.00 0.00 4.26
2451 3717 5.661312 TGTTAGAGTTAGTACATGGGCTGAT 59.339 40.000 0.00 0.00 0.00 2.90
2452 3718 6.837048 TGTTAGAGTTAGTACATGGGCTGATA 59.163 38.462 0.00 0.00 0.00 2.15
2453 3719 7.014326 TGTTAGAGTTAGTACATGGGCTGATAG 59.986 40.741 0.00 0.00 0.00 2.08
2454 3720 4.835615 AGAGTTAGTACATGGGCTGATAGG 59.164 45.833 0.00 0.00 0.00 2.57
2455 3721 3.904339 AGTTAGTACATGGGCTGATAGGG 59.096 47.826 0.00 0.00 0.00 3.53
2456 3722 2.496679 AGTACATGGGCTGATAGGGT 57.503 50.000 0.00 0.00 0.00 4.34
2457 3723 3.630625 AGTACATGGGCTGATAGGGTA 57.369 47.619 0.00 0.00 0.00 3.69
2458 3724 3.936461 AGTACATGGGCTGATAGGGTAA 58.064 45.455 0.00 0.00 0.00 2.85
2459 3725 3.904339 AGTACATGGGCTGATAGGGTAAG 59.096 47.826 0.00 0.00 0.00 2.34
2460 3726 2.776665 ACATGGGCTGATAGGGTAAGT 58.223 47.619 0.00 0.00 0.00 2.24
2461 3727 2.439507 ACATGGGCTGATAGGGTAAGTG 59.560 50.000 0.00 0.00 0.00 3.16
2462 3728 1.507140 TGGGCTGATAGGGTAAGTGG 58.493 55.000 0.00 0.00 0.00 4.00
2463 3729 1.009060 TGGGCTGATAGGGTAAGTGGA 59.991 52.381 0.00 0.00 0.00 4.02
2464 3730 1.416772 GGGCTGATAGGGTAAGTGGAC 59.583 57.143 0.00 0.00 0.00 4.02
2465 3731 2.116238 GGCTGATAGGGTAAGTGGACA 58.884 52.381 0.00 0.00 0.00 4.02
2466 3732 2.158943 GGCTGATAGGGTAAGTGGACAC 60.159 54.545 0.00 0.00 0.00 3.67
2467 3733 2.500098 GCTGATAGGGTAAGTGGACACA 59.500 50.000 5.14 0.00 0.00 3.72
2468 3734 3.055385 GCTGATAGGGTAAGTGGACACAA 60.055 47.826 5.14 0.00 0.00 3.33
2469 3735 4.384208 GCTGATAGGGTAAGTGGACACAAT 60.384 45.833 5.14 0.00 0.00 2.71
2470 3736 5.745227 CTGATAGGGTAAGTGGACACAATT 58.255 41.667 5.14 0.00 38.59 2.32
2471 3737 5.496556 TGATAGGGTAAGTGGACACAATTG 58.503 41.667 3.24 3.24 35.42 2.32
2472 3738 3.876309 AGGGTAAGTGGACACAATTGT 57.124 42.857 4.92 4.92 35.42 2.71
2473 3739 4.986054 AGGGTAAGTGGACACAATTGTA 57.014 40.909 11.53 0.00 35.42 2.41
2474 3740 4.648651 AGGGTAAGTGGACACAATTGTAC 58.351 43.478 11.53 5.92 35.42 2.90
2475 3741 4.103469 AGGGTAAGTGGACACAATTGTACA 59.897 41.667 11.53 8.15 45.01 2.90
2482 3748 5.661056 TGGACACAATTGTACACCAAAAA 57.339 34.783 20.55 5.37 42.09 1.94
2515 3781 9.958180 TTAATGAGACATCCATCTCTGTTTTAA 57.042 29.630 4.54 2.27 44.71 1.52
2516 3782 8.503458 AATGAGACATCCATCTCTGTTTTAAG 57.497 34.615 4.54 0.00 44.71 1.85
2517 3783 7.009179 TGAGACATCCATCTCTGTTTTAAGT 57.991 36.000 4.54 0.00 44.71 2.24
2518 3784 7.453393 TGAGACATCCATCTCTGTTTTAAGTT 58.547 34.615 4.54 0.00 44.71 2.66
2519 3785 7.939039 TGAGACATCCATCTCTGTTTTAAGTTT 59.061 33.333 4.54 0.00 44.71 2.66
2520 3786 8.697507 AGACATCCATCTCTGTTTTAAGTTTT 57.302 30.769 0.00 0.00 0.00 2.43
2521 3787 9.793259 AGACATCCATCTCTGTTTTAAGTTTTA 57.207 29.630 0.00 0.00 0.00 1.52
2524 3790 9.626045 CATCCATCTCTGTTTTAAGTTTTAACC 57.374 33.333 0.00 0.00 0.00 2.85
2525 3791 8.990163 TCCATCTCTGTTTTAAGTTTTAACCT 57.010 30.769 0.00 0.00 0.00 3.50
2526 3792 8.846211 TCCATCTCTGTTTTAAGTTTTAACCTG 58.154 33.333 0.00 0.00 0.00 4.00
2527 3793 8.630037 CCATCTCTGTTTTAAGTTTTAACCTGT 58.370 33.333 0.00 0.00 0.00 4.00
2532 3798 8.927721 TCTGTTTTAAGTTTTAACCTGTTTTGC 58.072 29.630 0.00 0.00 0.00 3.68
2533 3799 8.603242 TGTTTTAAGTTTTAACCTGTTTTGCA 57.397 26.923 0.00 0.00 0.00 4.08
2534 3800 8.496751 TGTTTTAAGTTTTAACCTGTTTTGCAC 58.503 29.630 0.00 0.00 0.00 4.57
2535 3801 6.872670 TTAAGTTTTAACCTGTTTTGCACG 57.127 33.333 0.00 0.00 0.00 5.34
2536 3802 4.443913 AGTTTTAACCTGTTTTGCACGT 57.556 36.364 0.00 0.00 0.00 4.49
2537 3803 4.417506 AGTTTTAACCTGTTTTGCACGTC 58.582 39.130 0.00 0.00 0.00 4.34
2538 3804 4.082679 AGTTTTAACCTGTTTTGCACGTCA 60.083 37.500 0.00 0.00 0.00 4.35
2539 3805 4.436242 TTTAACCTGTTTTGCACGTCAA 57.564 36.364 0.00 0.00 0.00 3.18
2540 3806 4.640789 TTAACCTGTTTTGCACGTCAAT 57.359 36.364 0.00 0.00 34.12 2.57
2541 3807 2.774439 ACCTGTTTTGCACGTCAATC 57.226 45.000 0.00 0.00 34.12 2.67
2542 3808 2.297701 ACCTGTTTTGCACGTCAATCT 58.702 42.857 0.00 0.00 34.12 2.40
2543 3809 2.687935 ACCTGTTTTGCACGTCAATCTT 59.312 40.909 0.00 0.00 34.12 2.40
2544 3810 3.044986 CCTGTTTTGCACGTCAATCTTG 58.955 45.455 0.00 0.00 34.12 3.02
2545 3811 3.044986 CTGTTTTGCACGTCAATCTTGG 58.955 45.455 0.00 0.00 34.12 3.61
2546 3812 1.786579 GTTTTGCACGTCAATCTTGGC 59.213 47.619 0.00 0.00 34.12 4.52
2547 3813 1.028130 TTTGCACGTCAATCTTGGCA 58.972 45.000 0.00 0.00 34.12 4.92
2548 3814 1.028130 TTGCACGTCAATCTTGGCAA 58.972 45.000 0.00 0.00 38.75 4.52
2549 3815 0.310543 TGCACGTCAATCTTGGCAAC 59.689 50.000 0.00 0.00 31.86 4.17
2550 3816 0.593128 GCACGTCAATCTTGGCAACT 59.407 50.000 0.00 0.00 31.86 3.16
2551 3817 1.804151 GCACGTCAATCTTGGCAACTA 59.196 47.619 0.00 0.00 31.86 2.24
2552 3818 2.420022 GCACGTCAATCTTGGCAACTAT 59.580 45.455 0.00 0.00 31.86 2.12
2553 3819 3.485877 GCACGTCAATCTTGGCAACTATC 60.486 47.826 0.00 0.00 31.86 2.08
2554 3820 3.684305 CACGTCAATCTTGGCAACTATCA 59.316 43.478 0.00 0.00 31.86 2.15
2555 3821 3.684788 ACGTCAATCTTGGCAACTATCAC 59.315 43.478 0.00 0.00 31.86 3.06
2556 3822 3.063997 CGTCAATCTTGGCAACTATCACC 59.936 47.826 0.00 0.00 31.86 4.02
2557 3823 3.378427 GTCAATCTTGGCAACTATCACCC 59.622 47.826 0.00 0.00 31.86 4.61
2558 3824 3.266772 TCAATCTTGGCAACTATCACCCT 59.733 43.478 0.00 0.00 37.61 4.34
2559 3825 3.567478 ATCTTGGCAACTATCACCCTC 57.433 47.619 0.00 0.00 37.61 4.30
2560 3826 2.551270 TCTTGGCAACTATCACCCTCT 58.449 47.619 0.00 0.00 37.61 3.69
2561 3827 2.912956 TCTTGGCAACTATCACCCTCTT 59.087 45.455 0.00 0.00 37.61 2.85
2562 3828 3.330701 TCTTGGCAACTATCACCCTCTTT 59.669 43.478 0.00 0.00 37.61 2.52
2563 3829 3.806949 TGGCAACTATCACCCTCTTTT 57.193 42.857 0.00 0.00 37.61 2.27
2564 3830 4.112634 TGGCAACTATCACCCTCTTTTT 57.887 40.909 0.00 0.00 37.61 1.94
2565 3831 4.079253 TGGCAACTATCACCCTCTTTTTC 58.921 43.478 0.00 0.00 37.61 2.29
2566 3832 4.202567 TGGCAACTATCACCCTCTTTTTCT 60.203 41.667 0.00 0.00 37.61 2.52
2567 3833 5.013704 TGGCAACTATCACCCTCTTTTTCTA 59.986 40.000 0.00 0.00 37.61 2.10
2568 3834 6.122964 GGCAACTATCACCCTCTTTTTCTAT 58.877 40.000 0.00 0.00 0.00 1.98
2569 3835 7.092623 TGGCAACTATCACCCTCTTTTTCTATA 60.093 37.037 0.00 0.00 37.61 1.31
2570 3836 7.442666 GGCAACTATCACCCTCTTTTTCTATAG 59.557 40.741 0.00 0.00 0.00 1.31
2571 3837 8.204836 GCAACTATCACCCTCTTTTTCTATAGA 58.795 37.037 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.618195 CGGTTGGTACATAATTTCTTTGCGT 60.618 40.000 0.00 0.00 39.30 5.24
95 96 1.695242 TCCAGTTGACGGTTGGTACAT 59.305 47.619 0.00 0.00 39.30 2.29
99 100 4.870190 GTCCAGTTGACGGTTGGT 57.130 55.556 0.00 0.00 33.49 3.67
166 167 9.186837 GATCGATGTACCCTAGAATTAATAGGA 57.813 37.037 0.54 0.00 42.15 2.94
169 170 8.571461 ACGATCGATGTACCCTAGAATTAATA 57.429 34.615 24.34 0.00 0.00 0.98
173 174 5.529791 CAACGATCGATGTACCCTAGAATT 58.470 41.667 24.34 0.00 0.00 2.17
180 181 2.601562 GGCAACGATCGATGTACCC 58.398 57.895 24.34 13.09 0.00 3.69
194 195 1.003331 GACGAAATCAACACACGGCAA 60.003 47.619 0.00 0.00 31.98 4.52
195 196 0.584396 GACGAAATCAACACACGGCA 59.416 50.000 0.00 0.00 31.98 5.69
211 212 6.581542 ACACTATTTTCTACTGAAACGAGACG 59.418 38.462 0.00 0.00 41.34 4.18
213 214 7.924412 ACAACACTATTTTCTACTGAAACGAGA 59.076 33.333 0.00 0.00 41.34 4.04
247 248 1.904852 GAGCACGCAGACACCATGTG 61.905 60.000 0.00 0.00 39.75 3.21
288 289 8.281531 TGGACAAATGGGAGACTCATTTATATT 58.718 33.333 8.88 0.00 41.28 1.28
292 293 5.512942 TGGACAAATGGGAGACTCATTTA 57.487 39.130 8.88 0.00 41.28 1.40
312 313 5.381174 TCAATCAGTTTCATGCTCTTTGG 57.619 39.130 0.00 0.00 0.00 3.28
314 315 6.395426 TGTTCAATCAGTTTCATGCTCTTT 57.605 33.333 0.00 0.00 0.00 2.52
315 316 6.395426 TTGTTCAATCAGTTTCATGCTCTT 57.605 33.333 0.00 0.00 0.00 2.85
336 337 6.609237 TTCCTCATCATAATCGAAGCTTTG 57.391 37.500 7.44 7.44 0.00 2.77
344 345 8.092521 AGCTACATTTTTCCTCATCATAATCG 57.907 34.615 0.00 0.00 0.00 3.34
348 349 6.830324 AGCAAGCTACATTTTTCCTCATCATA 59.170 34.615 0.00 0.00 0.00 2.15
356 357 5.163612 CCCTAAGAGCAAGCTACATTTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
463 465 1.191647 CAGTTTCCGTCGCTGTTACAC 59.808 52.381 0.00 0.00 0.00 2.90
464 466 1.493772 CAGTTTCCGTCGCTGTTACA 58.506 50.000 0.00 0.00 0.00 2.41
465 467 0.788391 CCAGTTTCCGTCGCTGTTAC 59.212 55.000 0.00 0.00 0.00 2.50
466 468 0.947180 GCCAGTTTCCGTCGCTGTTA 60.947 55.000 0.00 0.00 0.00 2.41
467 469 2.251642 GCCAGTTTCCGTCGCTGTT 61.252 57.895 0.00 0.00 0.00 3.16
499 501 7.432059 AGGATAAGTACTCGCACCTAATTAAC 58.568 38.462 0.00 0.00 0.00 2.01
502 504 6.281405 CAAGGATAAGTACTCGCACCTAATT 58.719 40.000 0.00 0.00 0.00 1.40
512 514 4.038162 ACGCTGATCCAAGGATAAGTACTC 59.962 45.833 13.77 0.00 35.88 2.59
526 528 1.341531 AGCCATGTACTACGCTGATCC 59.658 52.381 0.00 0.00 0.00 3.36
609 611 1.553706 ACGAACTACGGATGGTTCCT 58.446 50.000 0.00 0.00 41.92 3.36
635 647 4.864247 GGATGTGATTAAACCACAATGCAC 59.136 41.667 15.12 0.00 46.12 4.57
691 704 5.470098 AGCTCTTCTCTTCGCAACAAATTTA 59.530 36.000 0.00 0.00 0.00 1.40
703 736 3.860641 CTCCTTTGGAGCTCTTCTCTTC 58.139 50.000 14.64 0.00 43.29 2.87
744 777 2.799917 GCTCTACGTCAGCATCCGATTT 60.800 50.000 13.27 0.00 36.82 2.17
759 792 1.132643 CGACCCAGTACTGTGCTCTAC 59.867 57.143 21.18 5.08 0.00 2.59
760 793 1.003928 TCGACCCAGTACTGTGCTCTA 59.996 52.381 21.18 2.56 0.00 2.43
761 794 0.251209 TCGACCCAGTACTGTGCTCT 60.251 55.000 21.18 0.00 0.00 4.09
765 798 0.532573 ATGCTCGACCCAGTACTGTG 59.467 55.000 21.18 13.01 0.00 3.66
835 879 6.820152 GTGTCCGGATTAGTTTAGTTAATGGT 59.180 38.462 7.81 0.00 0.00 3.55
863 1021 6.884187 TGCTTGAACTAGTTTGTTCGTTATC 58.116 36.000 10.02 0.00 46.59 1.75
977 1137 3.254892 GGAGAGCGTTCGAAGAAGATTT 58.745 45.455 0.00 0.00 45.90 2.17
990 1153 1.377725 CTTGGCCATTGGAGAGCGT 60.378 57.895 6.09 0.00 0.00 5.07
992 1155 1.316651 GATCTTGGCCATTGGAGAGC 58.683 55.000 6.09 5.26 0.00 4.09
1039 1229 2.043852 GTCTCCGGAGCAGGGAGA 60.044 66.667 27.39 14.29 41.37 3.71
1046 1239 3.151022 CCTCCTGGTCTCCGGAGC 61.151 72.222 27.39 20.43 40.41 4.70
1060 1253 4.840005 GTACGCCTGCCTGCCCTC 62.840 72.222 0.00 0.00 0.00 4.30
1099 1304 1.302511 AGCCGTTGCCGTTGAAGAT 60.303 52.632 0.00 0.00 38.69 2.40
1294 1499 1.306568 GAGTGGCCTCCTCCTCCTT 60.307 63.158 3.32 0.00 0.00 3.36
1389 1594 2.579201 CCAGAGCACCCGTCGATT 59.421 61.111 0.00 0.00 0.00 3.34
1408 1613 2.016905 ACTCTGTACTCCCACTTGCT 57.983 50.000 0.00 0.00 0.00 3.91
1415 1623 1.726265 CCGCGTACTCTGTACTCCC 59.274 63.158 4.92 0.00 0.00 4.30
1536 1744 0.895559 AACCCAAAGCTAGCAGGTGC 60.896 55.000 18.83 0.00 42.49 5.01
1545 1753 1.106944 CCACGACCAAACCCAAAGCT 61.107 55.000 0.00 0.00 0.00 3.74
1547 1755 0.383949 CACCACGACCAAACCCAAAG 59.616 55.000 0.00 0.00 0.00 2.77
1548 1756 1.668101 GCACCACGACCAAACCCAAA 61.668 55.000 0.00 0.00 0.00 3.28
1607 1815 0.754217 AAGATTGCCGCTCCATGCAT 60.754 50.000 0.00 0.00 43.06 3.96
1608 1816 1.378882 GAAGATTGCCGCTCCATGCA 61.379 55.000 0.00 0.00 43.06 3.96
1609 1817 1.099879 AGAAGATTGCCGCTCCATGC 61.100 55.000 0.00 0.00 38.57 4.06
1610 1818 1.332997 GAAGAAGATTGCCGCTCCATG 59.667 52.381 0.00 0.00 0.00 3.66
1611 1819 1.673168 GAAGAAGATTGCCGCTCCAT 58.327 50.000 0.00 0.00 0.00 3.41
1612 1820 0.392998 GGAAGAAGATTGCCGCTCCA 60.393 55.000 0.00 0.00 0.00 3.86
1614 1822 2.009888 CGGAAGAAGATTGCCGCTC 58.990 57.895 0.00 0.00 37.08 5.03
1615 1823 4.208632 CGGAAGAAGATTGCCGCT 57.791 55.556 0.00 0.00 37.08 5.52
1631 1839 2.656422 GACATGAAACCGCATGAAAACG 59.344 45.455 10.93 0.00 46.64 3.60
1636 1844 1.902938 TTGGACATGAAACCGCATGA 58.097 45.000 10.93 0.00 46.64 3.07
1650 1858 4.062991 ACATGGAACTTCGTAGTTTGGAC 58.937 43.478 8.93 1.80 44.51 4.02
1660 1868 1.929836 GCTCAGCTACATGGAACTTCG 59.070 52.381 0.00 0.00 0.00 3.79
1669 1877 3.710209 AACTTTCTGGCTCAGCTACAT 57.290 42.857 0.00 0.00 0.00 2.29
1671 1879 4.540824 CAAAAACTTTCTGGCTCAGCTAC 58.459 43.478 0.00 0.00 0.00 3.58
1673 1881 2.223900 GCAAAAACTTTCTGGCTCAGCT 60.224 45.455 0.00 0.00 0.00 4.24
1674 1882 2.130395 GCAAAAACTTTCTGGCTCAGC 58.870 47.619 0.00 0.00 0.00 4.26
1675 1883 2.546584 GGGCAAAAACTTTCTGGCTCAG 60.547 50.000 1.79 0.00 36.01 3.35
1676 1884 1.412343 GGGCAAAAACTTTCTGGCTCA 59.588 47.619 1.79 0.00 36.01 4.26
1677 1885 1.412343 TGGGCAAAAACTTTCTGGCTC 59.588 47.619 1.79 0.00 36.01 4.70
1678 1886 1.494960 TGGGCAAAAACTTTCTGGCT 58.505 45.000 1.79 0.00 36.01 4.75
1679 1887 2.323968 TTGGGCAAAAACTTTCTGGC 57.676 45.000 0.00 0.00 35.03 4.85
1680 1888 3.622612 CAGTTTGGGCAAAAACTTTCTGG 59.377 43.478 13.10 1.45 45.84 3.86
1682 1890 4.222810 ACTCAGTTTGGGCAAAAACTTTCT 59.777 37.500 13.10 0.00 45.84 2.52
1701 2960 3.678056 AAAAGAGTCGCCATGTACTCA 57.322 42.857 17.44 0.00 43.74 3.41
1705 2964 2.811431 CACCAAAAAGAGTCGCCATGTA 59.189 45.455 0.00 0.00 0.00 2.29
1708 2967 1.608590 CACACCAAAAAGAGTCGCCAT 59.391 47.619 0.00 0.00 0.00 4.40
1711 2970 1.400494 ACACACACCAAAAAGAGTCGC 59.600 47.619 0.00 0.00 0.00 5.19
1785 3045 6.641169 TTATACAATCAAAGCACAACCACA 57.359 33.333 0.00 0.00 0.00 4.17
1786 3046 7.538575 AGATTATACAATCAAAGCACAACCAC 58.461 34.615 0.00 0.00 42.66 4.16
1787 3047 7.701539 AGATTATACAATCAAAGCACAACCA 57.298 32.000 0.00 0.00 42.66 3.67
1857 3117 8.091449 AGAGTTTATCTCACGAAAGAGTCAAAT 58.909 33.333 0.00 0.00 44.98 2.32
1859 3119 6.982852 AGAGTTTATCTCACGAAAGAGTCAA 58.017 36.000 0.00 0.00 44.98 3.18
1860 3120 6.576662 AGAGTTTATCTCACGAAAGAGTCA 57.423 37.500 0.00 0.00 44.98 3.41
1861 3121 7.754625 AGTAGAGTTTATCTCACGAAAGAGTC 58.245 38.462 0.00 0.00 44.98 3.36
1862 3122 7.690952 AGTAGAGTTTATCTCACGAAAGAGT 57.309 36.000 0.00 0.00 44.98 3.24
1866 3127 7.369803 ACGTAGTAGAGTTTATCTCACGAAA 57.630 36.000 10.65 0.00 44.98 3.46
1889 3150 6.294286 GCTACCTCTCCTACAGTATCATCAAC 60.294 46.154 0.00 0.00 0.00 3.18
1947 3211 7.311364 TCCACGGCAAATTATAAAGTAAGTC 57.689 36.000 0.00 0.00 0.00 3.01
1950 3214 7.808856 GTGTTTCCACGGCAAATTATAAAGTAA 59.191 33.333 0.00 0.00 0.00 2.24
1953 3217 6.386654 AGTGTTTCCACGGCAAATTATAAAG 58.613 36.000 0.00 0.00 46.56 1.85
1984 3250 7.835634 TTTTTGTTTGTCCATTGTTAACCTC 57.164 32.000 2.48 0.00 0.00 3.85
1985 3251 9.892130 TTATTTTTGTTTGTCCATTGTTAACCT 57.108 25.926 2.48 0.00 0.00 3.50
2023 3289 1.238439 CTCCGTTGGTCATTGTGCTT 58.762 50.000 0.00 0.00 0.00 3.91
2024 3290 1.237285 GCTCCGTTGGTCATTGTGCT 61.237 55.000 0.00 0.00 0.00 4.40
2025 3291 1.210155 GCTCCGTTGGTCATTGTGC 59.790 57.895 0.00 0.00 0.00 4.57
2026 3292 2.093306 TAGCTCCGTTGGTCATTGTG 57.907 50.000 0.00 0.00 0.00 3.33
2027 3293 2.812011 GTTTAGCTCCGTTGGTCATTGT 59.188 45.455 0.00 0.00 0.00 2.71
2028 3294 3.074412 AGTTTAGCTCCGTTGGTCATTG 58.926 45.455 0.00 0.00 0.00 2.82
2029 3295 3.074412 CAGTTTAGCTCCGTTGGTCATT 58.926 45.455 0.00 0.00 0.00 2.57
2030 3296 2.301870 TCAGTTTAGCTCCGTTGGTCAT 59.698 45.455 0.00 0.00 0.00 3.06
2031 3297 1.689813 TCAGTTTAGCTCCGTTGGTCA 59.310 47.619 0.00 0.00 0.00 4.02
2032 3298 2.067013 GTCAGTTTAGCTCCGTTGGTC 58.933 52.381 0.00 0.00 0.00 4.02
2033 3299 1.414919 TGTCAGTTTAGCTCCGTTGGT 59.585 47.619 0.00 0.00 0.00 3.67
2034 3300 2.163818 TGTCAGTTTAGCTCCGTTGG 57.836 50.000 0.00 0.00 0.00 3.77
2035 3301 3.560068 ACTTTGTCAGTTTAGCTCCGTTG 59.440 43.478 0.00 0.00 27.32 4.10
2036 3302 3.560068 CACTTTGTCAGTTTAGCTCCGTT 59.440 43.478 0.00 0.00 30.92 4.44
2037 3303 3.131396 CACTTTGTCAGTTTAGCTCCGT 58.869 45.455 0.00 0.00 30.92 4.69
2038 3304 3.390135 TCACTTTGTCAGTTTAGCTCCG 58.610 45.455 0.00 0.00 30.92 4.63
2039 3305 3.748568 CCTCACTTTGTCAGTTTAGCTCC 59.251 47.826 0.00 0.00 30.92 4.70
2040 3306 3.187432 GCCTCACTTTGTCAGTTTAGCTC 59.813 47.826 0.00 0.00 30.92 4.09
2041 3307 3.142174 GCCTCACTTTGTCAGTTTAGCT 58.858 45.455 0.00 0.00 30.92 3.32
2042 3308 2.878406 TGCCTCACTTTGTCAGTTTAGC 59.122 45.455 0.00 0.00 30.92 3.09
2043 3309 4.380531 TCTGCCTCACTTTGTCAGTTTAG 58.619 43.478 0.00 0.00 30.92 1.85
2044 3310 4.415881 TCTGCCTCACTTTGTCAGTTTA 57.584 40.909 0.00 0.00 30.92 2.01
2045 3311 3.281727 TCTGCCTCACTTTGTCAGTTT 57.718 42.857 0.00 0.00 30.92 2.66
2046 3312 3.498774 ATCTGCCTCACTTTGTCAGTT 57.501 42.857 0.00 0.00 30.92 3.16
2047 3313 3.307059 GGTATCTGCCTCACTTTGTCAGT 60.307 47.826 0.00 0.00 35.35 3.41
2048 3314 3.055530 AGGTATCTGCCTCACTTTGTCAG 60.056 47.826 0.00 0.00 32.39 3.51
2049 3315 2.906389 AGGTATCTGCCTCACTTTGTCA 59.094 45.455 0.00 0.00 32.39 3.58
2050 3316 3.618690 AGGTATCTGCCTCACTTTGTC 57.381 47.619 0.00 0.00 32.39 3.18
2051 3317 4.097418 AGTAGGTATCTGCCTCACTTTGT 58.903 43.478 0.00 0.00 39.94 2.83
2052 3318 4.744795 AGTAGGTATCTGCCTCACTTTG 57.255 45.455 0.00 0.00 39.94 2.77
2053 3319 5.763876 AAAGTAGGTATCTGCCTCACTTT 57.236 39.130 11.98 11.98 39.94 2.66
2054 3320 6.097129 GTCTAAAGTAGGTATCTGCCTCACTT 59.903 42.308 0.00 0.00 39.94 3.16
2055 3321 5.595133 GTCTAAAGTAGGTATCTGCCTCACT 59.405 44.000 0.00 0.00 39.94 3.41
2056 3322 5.360144 TGTCTAAAGTAGGTATCTGCCTCAC 59.640 44.000 0.00 0.00 39.94 3.51
2057 3323 5.360144 GTGTCTAAAGTAGGTATCTGCCTCA 59.640 44.000 0.00 0.00 39.94 3.86
2058 3324 5.360144 TGTGTCTAAAGTAGGTATCTGCCTC 59.640 44.000 0.00 0.00 39.94 4.70
2059 3325 5.269991 TGTGTCTAAAGTAGGTATCTGCCT 58.730 41.667 0.00 0.00 42.43 4.75
2060 3326 5.360144 TCTGTGTCTAAAGTAGGTATCTGCC 59.640 44.000 0.00 0.00 0.00 4.85
2061 3327 6.452494 TCTGTGTCTAAAGTAGGTATCTGC 57.548 41.667 0.00 0.00 0.00 4.26
2103 3369 9.841880 GTCATCTCGTATAATAAGTCTAATGCA 57.158 33.333 0.00 0.00 0.00 3.96
2107 3373 8.512956 GGCAGTCATCTCGTATAATAAGTCTAA 58.487 37.037 0.00 0.00 0.00 2.10
2108 3374 7.120873 GGGCAGTCATCTCGTATAATAAGTCTA 59.879 40.741 0.00 0.00 0.00 2.59
2109 3375 6.071840 GGGCAGTCATCTCGTATAATAAGTCT 60.072 42.308 0.00 0.00 0.00 3.24
2110 3376 6.071840 AGGGCAGTCATCTCGTATAATAAGTC 60.072 42.308 0.00 0.00 0.00 3.01
2111 3377 5.775701 AGGGCAGTCATCTCGTATAATAAGT 59.224 40.000 0.00 0.00 0.00 2.24
2112 3378 6.274157 AGGGCAGTCATCTCGTATAATAAG 57.726 41.667 0.00 0.00 0.00 1.73
2113 3379 6.946583 AGTAGGGCAGTCATCTCGTATAATAA 59.053 38.462 0.00 0.00 0.00 1.40
2114 3380 6.482524 AGTAGGGCAGTCATCTCGTATAATA 58.517 40.000 0.00 0.00 0.00 0.98
2115 3381 5.326069 AGTAGGGCAGTCATCTCGTATAAT 58.674 41.667 0.00 0.00 0.00 1.28
2116 3382 4.726583 AGTAGGGCAGTCATCTCGTATAA 58.273 43.478 0.00 0.00 0.00 0.98
2117 3383 4.368565 AGTAGGGCAGTCATCTCGTATA 57.631 45.455 0.00 0.00 0.00 1.47
2118 3384 3.231207 AGTAGGGCAGTCATCTCGTAT 57.769 47.619 0.00 0.00 0.00 3.06
2119 3385 2.688446 CAAGTAGGGCAGTCATCTCGTA 59.312 50.000 0.00 0.00 0.00 3.43
2120 3386 1.478510 CAAGTAGGGCAGTCATCTCGT 59.521 52.381 0.00 0.00 0.00 4.18
2121 3387 1.202463 CCAAGTAGGGCAGTCATCTCG 60.202 57.143 0.00 0.00 0.00 4.04
2122 3388 2.611225 CCAAGTAGGGCAGTCATCTC 57.389 55.000 0.00 0.00 0.00 2.75
2133 3399 7.124448 GGGATATCATCTAGTTACCCAAGTAGG 59.876 44.444 4.83 0.00 37.98 3.18
2134 3400 7.148052 CGGGATATCATCTAGTTACCCAAGTAG 60.148 44.444 4.83 0.00 38.53 2.57
2135 3401 6.662234 CGGGATATCATCTAGTTACCCAAGTA 59.338 42.308 4.83 0.00 36.26 2.24
2136 3402 5.480772 CGGGATATCATCTAGTTACCCAAGT 59.519 44.000 4.83 0.00 36.26 3.16
2137 3403 5.624738 GCGGGATATCATCTAGTTACCCAAG 60.625 48.000 4.83 0.00 36.26 3.61
2138 3404 4.222145 GCGGGATATCATCTAGTTACCCAA 59.778 45.833 4.83 0.00 36.26 4.12
2139 3405 3.767673 GCGGGATATCATCTAGTTACCCA 59.232 47.826 4.83 0.00 36.26 4.51
2140 3406 3.181489 CGCGGGATATCATCTAGTTACCC 60.181 52.174 4.83 0.00 0.00 3.69
2141 3407 3.734293 GCGCGGGATATCATCTAGTTACC 60.734 52.174 8.83 0.00 0.00 2.85
2142 3408 3.436496 GCGCGGGATATCATCTAGTTAC 58.564 50.000 8.83 0.00 0.00 2.50
2143 3409 2.096980 CGCGCGGGATATCATCTAGTTA 59.903 50.000 24.84 0.00 0.00 2.24
2144 3410 1.135373 CGCGCGGGATATCATCTAGTT 60.135 52.381 24.84 0.00 0.00 2.24
2145 3411 0.452184 CGCGCGGGATATCATCTAGT 59.548 55.000 24.84 0.00 0.00 2.57
2146 3412 0.452184 ACGCGCGGGATATCATCTAG 59.548 55.000 35.22 0.47 0.00 2.43
2147 3413 0.885879 AACGCGCGGGATATCATCTA 59.114 50.000 35.22 0.00 0.00 1.98
2148 3414 0.667487 CAACGCGCGGGATATCATCT 60.667 55.000 35.22 5.42 0.00 2.90
2149 3415 1.781555 CAACGCGCGGGATATCATC 59.218 57.895 35.22 0.00 0.00 2.92
2150 3416 2.317609 GCAACGCGCGGGATATCAT 61.318 57.895 35.22 7.19 0.00 2.45
2151 3417 2.964925 GCAACGCGCGGGATATCA 60.965 61.111 35.22 0.00 0.00 2.15
2162 3428 1.299089 AAGGTTTTCGCAGCAACGC 60.299 52.632 0.00 0.00 0.00 4.84
2163 3429 0.248458 ACAAGGTTTTCGCAGCAACG 60.248 50.000 0.00 0.00 0.00 4.10
2164 3430 1.921243 AACAAGGTTTTCGCAGCAAC 58.079 45.000 0.00 0.00 0.00 4.17
2165 3431 3.784701 TTAACAAGGTTTTCGCAGCAA 57.215 38.095 0.00 0.00 0.00 3.91
2166 3432 3.784701 TTTAACAAGGTTTTCGCAGCA 57.215 38.095 0.00 0.00 0.00 4.41
2167 3433 5.651172 ATTTTTAACAAGGTTTTCGCAGC 57.349 34.783 0.00 0.00 0.00 5.25
2168 3434 7.460296 ACAAATTTTTAACAAGGTTTTCGCAG 58.540 30.769 0.00 0.00 0.00 5.18
2169 3435 7.365840 ACAAATTTTTAACAAGGTTTTCGCA 57.634 28.000 0.00 0.00 0.00 5.10
2191 3457 9.899661 AGTTCATTTTGTAGCACCTATTATACA 57.100 29.630 0.00 0.00 0.00 2.29
2196 3462 9.908152 GTTTTAGTTCATTTTGTAGCACCTATT 57.092 29.630 0.00 0.00 0.00 1.73
2197 3463 9.297037 AGTTTTAGTTCATTTTGTAGCACCTAT 57.703 29.630 0.00 0.00 0.00 2.57
2198 3464 8.685838 AGTTTTAGTTCATTTTGTAGCACCTA 57.314 30.769 0.00 0.00 0.00 3.08
2199 3465 7.582667 AGTTTTAGTTCATTTTGTAGCACCT 57.417 32.000 0.00 0.00 0.00 4.00
2200 3466 9.738832 TTTAGTTTTAGTTCATTTTGTAGCACC 57.261 29.630 0.00 0.00 0.00 5.01
2212 3478 9.745880 TGTTTGTGTTGTTTTAGTTTTAGTTCA 57.254 25.926 0.00 0.00 0.00 3.18
2348 3614 9.899661 TGCAAGAATACCTATGTAGTTAATGTT 57.100 29.630 0.00 0.00 0.00 2.71
2349 3615 9.547753 CTGCAAGAATACCTATGTAGTTAATGT 57.452 33.333 0.00 0.00 34.07 2.71
2350 3616 8.499162 GCTGCAAGAATACCTATGTAGTTAATG 58.501 37.037 0.00 0.00 34.07 1.90
2351 3617 8.210946 TGCTGCAAGAATACCTATGTAGTTAAT 58.789 33.333 0.00 0.00 34.07 1.40
2352 3618 7.561251 TGCTGCAAGAATACCTATGTAGTTAA 58.439 34.615 0.00 0.00 34.07 2.01
2353 3619 7.119709 TGCTGCAAGAATACCTATGTAGTTA 57.880 36.000 0.00 0.00 34.07 2.24
2354 3620 5.989477 TGCTGCAAGAATACCTATGTAGTT 58.011 37.500 0.00 0.00 34.07 2.24
2355 3621 5.614324 TGCTGCAAGAATACCTATGTAGT 57.386 39.130 0.00 0.00 34.07 2.73
2356 3622 6.707608 TGAATGCTGCAAGAATACCTATGTAG 59.292 38.462 6.36 0.00 22.09 2.74
2357 3623 6.591001 TGAATGCTGCAAGAATACCTATGTA 58.409 36.000 6.36 0.00 22.09 2.29
2358 3624 5.439721 TGAATGCTGCAAGAATACCTATGT 58.560 37.500 6.36 0.00 22.09 2.29
2359 3625 6.183360 TGTTGAATGCTGCAAGAATACCTATG 60.183 38.462 6.36 0.00 22.09 2.23
2360 3626 5.887598 TGTTGAATGCTGCAAGAATACCTAT 59.112 36.000 6.36 0.00 22.09 2.57
2361 3627 5.123820 GTGTTGAATGCTGCAAGAATACCTA 59.876 40.000 6.36 0.00 22.09 3.08
2362 3628 4.081406 TGTTGAATGCTGCAAGAATACCT 58.919 39.130 6.36 0.00 22.09 3.08
2363 3629 4.168760 GTGTTGAATGCTGCAAGAATACC 58.831 43.478 6.36 0.00 22.09 2.73
2364 3630 4.797471 TGTGTTGAATGCTGCAAGAATAC 58.203 39.130 6.36 8.72 22.09 1.89
2365 3631 5.404096 CATGTGTTGAATGCTGCAAGAATA 58.596 37.500 6.36 0.00 22.09 1.75
2366 3632 4.242475 CATGTGTTGAATGCTGCAAGAAT 58.758 39.130 6.36 0.00 28.33 2.40
2367 3633 3.644823 CATGTGTTGAATGCTGCAAGAA 58.355 40.909 6.36 0.00 34.07 2.52
2368 3634 2.608506 GCATGTGTTGAATGCTGCAAGA 60.609 45.455 6.36 0.00 45.62 3.02
2369 3635 1.724623 GCATGTGTTGAATGCTGCAAG 59.275 47.619 6.36 0.00 45.62 4.01
2370 3636 1.785768 GCATGTGTTGAATGCTGCAA 58.214 45.000 6.36 0.00 45.62 4.08
2371 3637 3.500455 GCATGTGTTGAATGCTGCA 57.500 47.368 4.13 4.13 45.62 4.41
2385 3651 3.197265 TGGTATTGTCATCGACAGCATG 58.803 45.455 0.00 0.00 43.69 4.06
2386 3652 3.541996 TGGTATTGTCATCGACAGCAT 57.458 42.857 0.00 0.00 43.69 3.79
2387 3653 3.326836 TTGGTATTGTCATCGACAGCA 57.673 42.857 0.00 0.00 43.69 4.41
2388 3654 4.678509 TTTTGGTATTGTCATCGACAGC 57.321 40.909 0.00 0.00 43.69 4.40
2422 3688 6.924060 GCCCATGTACTAACTCTAACAGTATG 59.076 42.308 0.00 0.00 46.00 2.39
2423 3689 6.839657 AGCCCATGTACTAACTCTAACAGTAT 59.160 38.462 0.00 0.00 32.30 2.12
2424 3690 6.096423 CAGCCCATGTACTAACTCTAACAGTA 59.904 42.308 0.00 0.00 32.30 2.74
2425 3691 5.024118 AGCCCATGTACTAACTCTAACAGT 58.976 41.667 0.00 0.00 36.64 3.55
2426 3692 5.127194 TCAGCCCATGTACTAACTCTAACAG 59.873 44.000 0.00 0.00 0.00 3.16
2427 3693 5.020795 TCAGCCCATGTACTAACTCTAACA 58.979 41.667 0.00 0.00 0.00 2.41
2428 3694 5.593679 TCAGCCCATGTACTAACTCTAAC 57.406 43.478 0.00 0.00 0.00 2.34
2429 3695 6.493802 CCTATCAGCCCATGTACTAACTCTAA 59.506 42.308 0.00 0.00 0.00 2.10
2430 3696 6.010850 CCTATCAGCCCATGTACTAACTCTA 58.989 44.000 0.00 0.00 0.00 2.43
2431 3697 4.835615 CCTATCAGCCCATGTACTAACTCT 59.164 45.833 0.00 0.00 0.00 3.24
2432 3698 4.021016 CCCTATCAGCCCATGTACTAACTC 60.021 50.000 0.00 0.00 0.00 3.01
2433 3699 3.904339 CCCTATCAGCCCATGTACTAACT 59.096 47.826 0.00 0.00 0.00 2.24
2434 3700 3.646637 ACCCTATCAGCCCATGTACTAAC 59.353 47.826 0.00 0.00 0.00 2.34
2435 3701 3.936461 ACCCTATCAGCCCATGTACTAA 58.064 45.455 0.00 0.00 0.00 2.24
2436 3702 3.630625 ACCCTATCAGCCCATGTACTA 57.369 47.619 0.00 0.00 0.00 1.82
2437 3703 2.496679 ACCCTATCAGCCCATGTACT 57.503 50.000 0.00 0.00 0.00 2.73
2438 3704 3.646637 ACTTACCCTATCAGCCCATGTAC 59.353 47.826 0.00 0.00 0.00 2.90
2439 3705 3.646162 CACTTACCCTATCAGCCCATGTA 59.354 47.826 0.00 0.00 0.00 2.29
2440 3706 2.439507 CACTTACCCTATCAGCCCATGT 59.560 50.000 0.00 0.00 0.00 3.21
2441 3707 2.224621 CCACTTACCCTATCAGCCCATG 60.225 54.545 0.00 0.00 0.00 3.66
2442 3708 2.057922 CCACTTACCCTATCAGCCCAT 58.942 52.381 0.00 0.00 0.00 4.00
2443 3709 1.009060 TCCACTTACCCTATCAGCCCA 59.991 52.381 0.00 0.00 0.00 5.36
2444 3710 1.416772 GTCCACTTACCCTATCAGCCC 59.583 57.143 0.00 0.00 0.00 5.19
2445 3711 2.116238 TGTCCACTTACCCTATCAGCC 58.884 52.381 0.00 0.00 0.00 4.85
2446 3712 2.500098 TGTGTCCACTTACCCTATCAGC 59.500 50.000 0.00 0.00 0.00 4.26
2447 3713 4.819105 TTGTGTCCACTTACCCTATCAG 57.181 45.455 0.00 0.00 0.00 2.90
2448 3714 5.013704 ACAATTGTGTCCACTTACCCTATCA 59.986 40.000 11.07 0.00 29.49 2.15
2449 3715 5.497474 ACAATTGTGTCCACTTACCCTATC 58.503 41.667 11.07 0.00 29.49 2.08
2450 3716 5.514500 ACAATTGTGTCCACTTACCCTAT 57.486 39.130 11.07 0.00 29.49 2.57
2451 3717 4.986054 ACAATTGTGTCCACTTACCCTA 57.014 40.909 11.07 0.00 29.49 3.53
2452 3718 3.876309 ACAATTGTGTCCACTTACCCT 57.124 42.857 11.07 0.00 29.49 4.34
2453 3719 4.214758 GTGTACAATTGTGTCCACTTACCC 59.785 45.833 21.42 0.00 40.46 3.69
2454 3720 4.214758 GGTGTACAATTGTGTCCACTTACC 59.785 45.833 21.42 11.20 42.57 2.85
2455 3721 4.817464 TGGTGTACAATTGTGTCCACTTAC 59.183 41.667 21.42 8.95 42.57 2.34
2456 3722 5.037383 TGGTGTACAATTGTGTCCACTTA 57.963 39.130 21.42 13.52 42.57 2.24
2457 3723 3.892284 TGGTGTACAATTGTGTCCACTT 58.108 40.909 21.42 0.00 42.57 3.16
2458 3724 3.569194 TGGTGTACAATTGTGTCCACT 57.431 42.857 21.42 0.00 42.57 4.00
2459 3725 4.640789 TTTGGTGTACAATTGTGTCCAC 57.359 40.909 21.42 20.95 42.31 4.02
2460 3726 5.661056 TTTTTGGTGTACAATTGTGTCCA 57.339 34.783 21.42 20.41 39.21 4.02
2489 3755 9.958180 TTAAAACAGAGATGGATGTCTCATTAA 57.042 29.630 6.67 4.35 45.62 1.40
2490 3756 9.605275 CTTAAAACAGAGATGGATGTCTCATTA 57.395 33.333 6.67 0.00 45.62 1.90
2491 3757 8.105829 ACTTAAAACAGAGATGGATGTCTCATT 58.894 33.333 6.67 0.00 45.62 2.57
2492 3758 7.628234 ACTTAAAACAGAGATGGATGTCTCAT 58.372 34.615 6.67 0.00 45.62 2.90
2493 3759 7.009179 ACTTAAAACAGAGATGGATGTCTCA 57.991 36.000 6.67 0.00 45.62 3.27
2494 3760 7.913674 AACTTAAAACAGAGATGGATGTCTC 57.086 36.000 0.00 0.00 43.95 3.36
2495 3761 8.697507 AAAACTTAAAACAGAGATGGATGTCT 57.302 30.769 0.00 0.00 0.00 3.41
2498 3764 9.626045 GGTTAAAACTTAAAACAGAGATGGATG 57.374 33.333 0.00 0.00 0.00 3.51
2499 3765 9.588096 AGGTTAAAACTTAAAACAGAGATGGAT 57.412 29.630 0.00 0.00 0.00 3.41
2500 3766 8.846211 CAGGTTAAAACTTAAAACAGAGATGGA 58.154 33.333 0.00 0.00 0.00 3.41
2501 3767 8.630037 ACAGGTTAAAACTTAAAACAGAGATGG 58.370 33.333 0.00 0.00 0.00 3.51
2506 3772 8.927721 GCAAAACAGGTTAAAACTTAAAACAGA 58.072 29.630 0.00 0.00 0.00 3.41
2507 3773 8.713271 TGCAAAACAGGTTAAAACTTAAAACAG 58.287 29.630 0.00 0.00 0.00 3.16
2508 3774 8.496751 GTGCAAAACAGGTTAAAACTTAAAACA 58.503 29.630 0.00 0.00 0.00 2.83
2509 3775 7.684897 CGTGCAAAACAGGTTAAAACTTAAAAC 59.315 33.333 0.00 0.00 0.00 2.43
2510 3776 7.384387 ACGTGCAAAACAGGTTAAAACTTAAAA 59.616 29.630 0.00 0.00 44.81 1.52
2511 3777 6.867293 ACGTGCAAAACAGGTTAAAACTTAAA 59.133 30.769 0.00 0.00 44.81 1.52
2512 3778 6.388278 ACGTGCAAAACAGGTTAAAACTTAA 58.612 32.000 0.00 0.00 44.81 1.85
2513 3779 5.952033 ACGTGCAAAACAGGTTAAAACTTA 58.048 33.333 0.00 0.00 44.81 2.24
2514 3780 4.811908 ACGTGCAAAACAGGTTAAAACTT 58.188 34.783 0.00 0.00 44.81 2.66
2515 3781 4.082679 TGACGTGCAAAACAGGTTAAAACT 60.083 37.500 0.00 0.00 46.99 2.66
2516 3782 4.167268 TGACGTGCAAAACAGGTTAAAAC 58.833 39.130 0.00 0.00 46.99 2.43
2517 3783 4.436242 TGACGTGCAAAACAGGTTAAAA 57.564 36.364 0.00 0.00 46.99 1.52
2518 3784 4.436242 TTGACGTGCAAAACAGGTTAAA 57.564 36.364 0.00 0.00 46.99 1.52
2519 3785 4.336993 AGATTGACGTGCAAAACAGGTTAA 59.663 37.500 0.00 0.00 46.99 2.01
2520 3786 3.880490 AGATTGACGTGCAAAACAGGTTA 59.120 39.130 0.00 0.00 46.99 2.85
2521 3787 2.687935 AGATTGACGTGCAAAACAGGTT 59.312 40.909 0.00 0.00 46.99 3.50
2523 3789 3.044986 CAAGATTGACGTGCAAAACAGG 58.955 45.455 0.00 0.00 40.48 4.00
2524 3790 3.044986 CCAAGATTGACGTGCAAAACAG 58.955 45.455 0.00 0.00 40.48 3.16
2525 3791 2.797792 GCCAAGATTGACGTGCAAAACA 60.798 45.455 0.00 0.00 40.48 2.83
2526 3792 1.786579 GCCAAGATTGACGTGCAAAAC 59.213 47.619 0.00 0.00 40.48 2.43
2527 3793 1.406898 TGCCAAGATTGACGTGCAAAA 59.593 42.857 0.00 0.00 40.48 2.44
2528 3794 1.028130 TGCCAAGATTGACGTGCAAA 58.972 45.000 0.00 0.00 40.48 3.68
2529 3795 1.028130 TTGCCAAGATTGACGTGCAA 58.972 45.000 0.00 0.00 41.53 4.08
2530 3796 0.310543 GTTGCCAAGATTGACGTGCA 59.689 50.000 0.00 0.00 0.00 4.57
2531 3797 0.593128 AGTTGCCAAGATTGACGTGC 59.407 50.000 0.00 0.00 0.00 5.34
2532 3798 3.684305 TGATAGTTGCCAAGATTGACGTG 59.316 43.478 0.00 0.00 0.00 4.49
2533 3799 3.684788 GTGATAGTTGCCAAGATTGACGT 59.315 43.478 0.00 0.00 0.00 4.34
2534 3800 3.063997 GGTGATAGTTGCCAAGATTGACG 59.936 47.826 0.00 0.00 0.00 4.35
2535 3801 3.378427 GGGTGATAGTTGCCAAGATTGAC 59.622 47.826 0.00 0.00 0.00 3.18
2536 3802 3.266772 AGGGTGATAGTTGCCAAGATTGA 59.733 43.478 0.00 0.00 0.00 2.57
2537 3803 3.624777 AGGGTGATAGTTGCCAAGATTG 58.375 45.455 0.00 0.00 0.00 2.67
2538 3804 3.525199 AGAGGGTGATAGTTGCCAAGATT 59.475 43.478 0.00 0.00 0.00 2.40
2539 3805 3.118531 AGAGGGTGATAGTTGCCAAGAT 58.881 45.455 0.00 0.00 0.00 2.40
2540 3806 2.551270 AGAGGGTGATAGTTGCCAAGA 58.449 47.619 0.00 0.00 0.00 3.02
2541 3807 3.356529 AAGAGGGTGATAGTTGCCAAG 57.643 47.619 0.00 0.00 0.00 3.61
2542 3808 3.806949 AAAGAGGGTGATAGTTGCCAA 57.193 42.857 0.00 0.00 0.00 4.52
2543 3809 3.806949 AAAAGAGGGTGATAGTTGCCA 57.193 42.857 0.00 0.00 0.00 4.92
2544 3810 4.336280 AGAAAAAGAGGGTGATAGTTGCC 58.664 43.478 0.00 0.00 0.00 4.52
2545 3811 8.204836 TCTATAGAAAAAGAGGGTGATAGTTGC 58.795 37.037 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.