>input_sequence_74789
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------------------------------------------------------------ATGGCCAAGATCCAGCCTCT
TCCTGCCGCGGCC---------TCTTCTT---CTCCCTGCTCCGGAGACCAGGAGGGCAGGCA------------GGCGT
ACACGGTGTGGATGAAGTCGCTGATCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGCCGGTGCGCCCACAACGGCGGCAAGGAGGAGGAGGCCACTCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACAATCGAC
GGGTGCTCTGGCA---GCAAGTGGGAGTACAGAGTACGCGGCGTGGATGGCGCGGTGGTGGCGGAGGTCGCACGGAAGCA
GACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGAGCACCTGCTAGCTTTGG
GTTTGGTCGTGGTGCGTGGCCTCATGAACCGCTCCATGTGA---------------------------------------
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-------------------
>chr3A_1_TraesCS3A01G449800
GATCACACTGAGTACTATGTACTGATCTCTACCACTCGTACATAGTTCGGCTGCTCCACACTGATCTGTACGTACCGTAA
ACACGCAAAGAAATTATGTACCAACCGTCAACTGGACTAGCACCACTTGATCCGGTAAACGATGGAGCTTTCTCTCTGAT
GGCTACTCCTATTAATTCTAGGGTACATCGATCGTTGCCGTGTGTTGATTTCGTCTCGTTTCAGTAGAAAATAGTGTTGT
GTGTATTCACATGGTGTCTGCGTGCTCCACGGAGCAATGGTGATTACTAATATAAATGAGTCTCCCATTTGTCCAAAGAG
CATGAAACTGATTGAACAAAGCTTCGATTATGATGAGG-AAAAATGTAGCTTGCTCTTAGGGATTGAGTTCTCCCATGTG
TGGATAAGCGATGTTGTAAACAAAGTTGTTCTGAGGGCCGCCGGCTAACATCAGAGAAGGTGTAGTGTAACAGCGACGGA
AACTGGCCTCTGCCTGCTTAGTTAATTAGGTGCGAGTACTTATCCTTGGATCAGCGTAGTACATGGCTACACGCCTGCTT
TCTTTCTGCTCACCGAACAGAACAATCTATTTTCTGACTAGCAGCCCAAAAGGAACCATCCGTAGTTC----------GT
TTTGTTGTGCATTGTGGTTTAATCACATCCAGTCTCAACTGCCTGT-CTCATGTAAGCACCTAT----------------
----AAATTTGTTGCGAAGAGAAGAGCTCCAAAGGAGCACTATGTAAACGTGATGCAAATCGGATGCTGACGTAGAGCAC
------AGTACTGGGTCGAGCATAAACAAGTTCAGTGCAGCACTG--TTCTATCCAAAGGCGTGACGCACACA---CTA-
----CCATTAACTAAAC---------------------------------------------------------------
----------------------------------------------TAATCCGGACACGGGATAACGAACAAACTAGTTC
AAGCAACTATAAATATGTAGAACCAGCCACTGGCTCCCA--ACCATCCCAATCATCGATGTCCTTCTCATCGCAACAGCA
GCAGAGCAGAGCAGAGAAATCTTCTTC---GAACGC------------------TCTCCAATGGCCAAGATCCAGCCTCT
TCCTGCCGCGGCC---------TCTTCTT---CTCCCTGCTCCGGAGACCAGGAGGGCAGGCA------------GGCGT
ACACGGTGTGGATGAAGTCGCTGATCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGCCGGTGCGCCCACAACGGCGGCAAGGAGGAGGAGGCCACTCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACAATCGAC
GGGTGCTCTGGCA---GCAAGTGGGAGTACAGAGTACGCGGCGTGGATGGCGCGGTGGTGGCGGAGGTCGCACGGAAGCA
GACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGAGCACCTGCTAGCTTTGG
GTTTGGTCGTGGTGCGTGGCCTCATGAACCGCTCCATGTGATGGATGCATGCATATGCATGGAGCGGCAATCTTCTTCCG
TTTTCATGCGGTTTCATGTCCAAACTACGAAGTTCCATGTAGCTGAGCCA------------------------------
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-------------------------------------------------------------GAAAGTTTTTGCCCAAACT
GAGTACATGGCGACTCTTTTTGGTGTGTGTTTTTACCCTTCCTCAAAGGGTTTTACCATAATCATCA-AAAAAATGAAAG
TAAATGTGGTTGTGCTTTGATTGTATAATCTTTATAGGTGTTTGGTTTTCTATCTAGATTATATATTGTATTGGTAATTT
GAC-TCTTTCGTGAGATAAACTCTACTACGTTGATGATACTGTAGGAGAGGTAGCGCTCAGTTTGCGGTATTTAGTTATA
C---GTGATAGACTTACTTTATAATTTGCCGT--GGAAACACTAAAAAAGAGGTTAACAATGGACAAACAAAAATAATTA
TCATGATCAAGCACAATGACCAACGGAGCTAAACTGACAAAGTGAGGCAGATACCTACTTTAGACACAGATAAATTAGAC
ATATAGTCTGCATTAGACTTATTATACGAGATGACTGCCCTACTTGGGTAACTAGATGATATCCCGCGCGTTGCTGCGAA
AACCTTGTTAAAAATTTGTATAATAGGTGCTACAAAATGAACTAAAACTAAAACAACACAAACATTAATTTTAAACACTA
AAAACATGAAGCATGTAGCAAAATAATATATAAAAAATTGCAAAACCTCTAAATTATAGTATTATATATAAATGCTACTT
CTTGCAAAAAAGAAACATTAACTACATAGGTATTCTTGCAGCATTCAACACATGCTGTCGATGACAATACCAAAAAAAGT
CAACACACATACTGTTAGAGTTAGTACATGGGCTGATAGGGTAAGTGGACACAATTGTACACCAAAAAAATATATTAATG
AGACATCCATCTCTGTTTTAAGTTTTAACCTGTTTTGCACGTCAATCTTGGCAACTATCACCCTCTTTTTCTATAGAAAA
AGAGATACACATAAGTATC
>chr3D_1
GATCACACTGAGTACTATGTACTGATCTCTACCACTCGTACATAGTTCGGCTGCTCCACACTGATATGTACGTACCGTAA
ACGCGCAAAGAAATTGTGTGCCTACCGTCAACTGGACTAGCACCACTTGATCCGGTAAACGATGGAGCTTTCTCTCTGAT
GGCTACCCCCATTGATTCTACGCTCCATCGATCGCCGCCGTGTGTTGATTTGGCCTCGTTTCAGTAGAAAACAGTGTTGT
GTGTATTAACATGGTGTCTGCGTGCTCCACGGAACAATGGTGATTACTGATACAAATGAGTCTCCCATTTGTGC--AGAG
CATGAAACTGATTGAATAAAGCTTGGATAATGATGAAGAAAAAATGTAGCTTGCTCTTAGGGATCGAGTTCTCCCATGTG
TGGATAAGTGATGTTGTAAACAAAGTTGTTCTGAGGGCCGCCGGCTAACATCAGAGAAGGTGTA-----ACAGCGACGGA
AACTGGCCTCTGCCTGCTTAATTTATTAGGTGCAAGTACTTATCCTTCGATCAGCGTAGTACATGGCTACACGCCTGCTT
TCTTTCTGCTCACCCAACAGAACAATCCATTTTATGACTAGCAGCCCAAATGGAACCATCCGTAGTTC----------GT
TTTGTTCTGCATTGTGGTTTAATCACATCCAGTCTCAACTGCCTGTACTCATGTAAGCACCTACAAGTTTGTAATTAACT
GTGCAAATTTGTTGCCAAGAGAAGAGCTCCAAACGAGCACTATGTAAACGTGATGCTAATCGGATGCTGACTCGT---AC
------AATACTGGGTCGAGCATAAACAAGTTCAGTGCAGCGCTG--TTCTATCCAAAGGCGTGACGCACACA---CTG-
----CCATTAACTAGTGTATATGCCCCACCAGACAATAAGTGCACTGATCCAACGTTATTGTTTAGAAAAGTTAATTGGC
AACCTGTACCACCTGCATCTCTCTTCACGTTACAGTTAAGAGACAATAATCCGCGCACGGAATAACGAACAAACTAGTTC
AAGCAACCATAAATATGTAGAACCAGCCACTGGCTCCCA--ACCATCCCAATCATCGATGTCATTCTCATCGCAACAGCA
GCAGAGCAGAGAGA--------TCTTCTTCGAGCTC------------------TCTCCAATGGCCAAGATCCAGCCCCT
TCCTGCCGCGGCAGCCTCGCCTTCTC------CCTGCTCCGGTGATCACCACCAGAGCCCACA------------GGCGT
ATAAGGTCTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCCGTGTACGGGCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTTTTCTTCATGGACCGTCAGGGGAACGCCCTCGTCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAAGAGATGGGAGGTCTGCCGTTGCGCCCACAACGGCCACCAGGACGAGGAAGCGACGCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCAGGGCCGCCGTGGCGATGCACGGCGGCAGCGGCACGTGCTACAGGATCGAC
GGGTGCTCCGGCGAGCACAAGCCCGAGTACAGAGTCCGCGGCGTGGACGGCTCTGCCGTGGCGGAGGTGGCCCGGAAGCA
GACGGCGGCGGGGGTGGTGCTAGGGGAGGACGTGCTGACGCTGACGATGGCGCCGGAGGTGGATCACCTACTCGTCCTGG
GCTTGGTCGTGGTGTGCGGCCTCATGAACCGATCCATGTGATGGATGCATGCATGGAACGGC--CGGCAATCTTCTTCGG
TTTCCATGCGGTTTCATTTCCAAACTAGGAAGTTCCTTTTTAGATGAGCTAAAAAGTTTTGGACGACGATAACTGCCACA
CGTGTTGTTGTTAAGGGGTGTGCCTACACGTTTTGTATGTTTAAGAGGACCAGCCCATACACCTACGTGTGGGTAAAACA
ACTAGCGCACATACACCTTTTTTTTCCTTGCGCTCCCTCTCACACGCCTATGTGTGGGCAAAATGAATAACGCCCACACG
ATGTCTCTCAGCCACCTACCTCACGGTCTCACACTCCCCGCGTGACAGTCACCACGCGTCTCCGCAGTTGCCATGGTCCG
GACCCTCTTCAATGTCCGTTTAACTGCAGCTGCCATGTCGCTGAATTACAGTTGCCATGTCGGACAACTACAGTTGCCAT
GGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGTCAGATGCCATTTTGGACAACTGCAGCTGTTGCCATGTATGGTC
TAGTTTACTATAGTTGCCATGATTTGAAAACTTTAGAGGTTGCCACCTACTAACACTAAGCAGTTGCCATGTATGGTTTG
GTTTACTACAGTTGCCATGATTTGAAAACCTTAGAGGTTGCCACCTACTAACACTAGGCAGTTGCCGTGTAGCGCTACAA
AGAGACATGGCAAAATAACATGTTCGGGTAAAAGAGAGAGTTGTCATCTGCTTACAAGCACACTAGGGCAGTTGCCGTGT
ACCCTGCAAAACACATGGCAACTGCACATGTTCGGGTAAAAAAAAAGAGAAAGTTGCCATCTGCTTACAAGCACGCTAGG
GCAGTTGCCATGTACACTGCAAAACGCATGGCAACTGATAGCTTGGGTGTGGAGAGAGGAGACGGGCGTGTGGGTGAGAT
GGCAAATGCCCACACACCAGCCCTTGTGCGTGAGTGAAAACTGGCGTGTGGGCGAACTGCTAAACACCCACACACCGGCC
CCTCCGTGTCGTGAAACGGACGTGTGGGCGACCGGGTGAATGCCCACACATCAGCCCAGTCCTACGTGGCACCATAAACA
TGCCAAGATTCGTGCATCCACAAACGGACGCGGATCCACGCTTGTGGGCGTTAGTGTTTCCGAAAGTTTTTGCCCAAACC
GAGGACGTGTCGACTCTTTTTGGTGTGTGTTTTTAACCTTCCTCAAAGGGTTTTATCATAGTCATCAGAAAAAATGAAAG
TAAACAGGGTTGTTCTTTGATTGTATAATCTTTATATGTGTTTGGTTT----TCTAGATTATATATTGTATTGGTATTGA
CTCTTCGTTCGTGACATAAACTCTACTACATTGATGATACTGTAGGAGAGGTAGTGCTCAGTTTGCGGTATTTAGTTATA
CAGTGTGATAAACATATTTTATAATTTGCCGTGGGGAAACACTAAAAAAAGA-TTAACAATGGACAAACAAAAATAATTA
TCATGATC------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr3B_551
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-----------------------------------------------------------------------CGCCTACTT
TCTTTATGCTCACCGAACAGAACAATCTATTTTCTGACAAACCATCATGGTTTGAAGATGCAAGTGCACACATGTTCTGT
ATTGCATTGGATTACGGTTTAATAAGATCCAGGATTCAACCATATGCATTGGATCGATGTTCTGGAAAACAAGTTGGAAC
TGCTACCCT-----------------------AGAAGCACTTGCAAAACGTGATGCTAATCGGATGCTGACTAGGAGTAG
TACAGTAGTACTTGTGGGAGCATAAACAACTTTGGTGCAGCACTATTTTCTATCCTTACGCGTGACGCACACA---CTGG
ACTGCCATTAACAAAGTAGTTCAAGCATCCATAA----------------------------------------------
-------------------------------------------------------------------AAAAAAGTAGTTC
AAGCATCTATAAATAGATGAAACCAACCACTGCACCC----ACCATCCCAA---------------TCATCGCAACAGCA
GCCGAGAAGAGCAGAGCAATCTTCTTCTTTGATCTC------------------TCCACAATGGCAAAGATCCAGCCCTT
TCCTTCCTCTCCC---------TGCTCTA---CTTCTTCCCCCGGAGTTCAACAGGGCAGGCA------------CGCGT
ACACGGTGTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCAGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGGG
CAAGGGCGTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCAAAGACGGCGGCCAGGACGAGGAGGCGACACAGT
GGTTCAGCGTGCGCCGGGCCGAAAAGGGCGAGGCCGCGGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACGATAGAA
GGATGCTGCGC---GCGCAAGCCGGAGTACAAAATCCGGGACGTGGATAGCACGGTGGTGGCGGAGGTGGCACGGAAGCA
GACGGCGGCGGGTGTGGTGCTGGGGGAGGACGTGCTGACGCTGACGGTGGGACCAAAGGTGGACCACCTGCTCGTGTTGG
GCTTGGTCGTCGTACGTGGCCTCATGAACCGTTCCTTGTGATGGATGCATGCA---------------------------
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-------------------
>chr3B_724
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-----------------------------------AGCACTAGCAAAACGTGATGCTAATCGGATGTTGACTAGGAGTAG
TACATAAGTAGTAGGTGGAGCATAAACAACTTTGGTGCAGCACTATT--CTATCCTAACGCGTGACGCGCACAATACTG-
----CCATTAACTAATTTCCAGTCCAGAGA--------------------------------------------------
--------------------------------------------------CCTGACACGGAATAACGAACAAAGTAGTTC
AAGCATCTATAAATAGATGGAACCAGCCACTGCATCC----GCCATCCCAA---------------TCATCGCAACAGCA
GCCGAGCAGAGCAGAGCAATCTTCTTCTTCCATCTC------------------TCGTCGATGGCCAAGATCCAGCCCCA
TCCTTCCTCTCCC---------TGCTCCA---GCTCTTCCTACGGAAACCAACAGAGCTCGCA------------GGCTT
ACACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCGCGGTGTATGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTTCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCAAGACGGAGGCCAGGACGAGGAGGCGACTCCTT
GGTTCAGCGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTGGTGATGCACGGCGGCTCGGGGACGTGCTACACGATAGAA
GGATGCTGCGC---GCGCAAAGCGGAGAACAGAATCCGCGACGTGGACGGCACAGTCGTGGCGGAGGTGGCGCGGAAGCA
GACGGCGGCGGGTGTGGTGCTCGGGGAGGACGTGCTGACCCTGACGGTGGGACCAAAGGTGGACCAACTGCTCGTGTTGG
GCTTGGTCGTTGTGCGTGGCCTCATGAACCGTTCCTTGTGATGGATGCATG-----------------------------
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>chr3A_726
--------------------------------------------------------------------------------
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-------------------------------------CACTATTTAAACGTGCCCGCAACTGCATGCTGACTAGT---GC
G------GTGCTAGATGGAGCATAAACAACTTTGGTGTAGCACTATT--CTATCCTAACCAGTGACGCCTACA---GCG-
----CCATAAACTAATGCTTCAGACACCCTCCATAGTTAACAGAATAG--------------------------------
--------------------------------------------------------------------------------
AAGCACCTATAAATAGGCCAAACCAGCCACTGACGCCCACCACCATCCCAATCATCTCAGCTCATCTCATCGCGACGTTA
A--------AGCAGAGCAATC-----------TCTC------------------TCGTCCATGGCCAAGATCCAGCCCCT
TGCTGCCGCCGCC---------TCAC------CGTCGTCCTCCGGAGTTCAACAGGGCAGGCA------------GGCGT
ACACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCACGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTGAGGGGAACTCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGTCGGTGCGCCCACAACGGCGGCCAGGAGGAGGAGGCCACGCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCGGAGCCGCCGTGGCGATGCACGGCGGCACGGGGACGTGCTACACGATCGAC
GGGTGCTCTGC---CCGCAAGTCGGAGTACAGGGTACGCGGCGTGGATGGCGCGGTGGTGGCAGAGGTCGCACGGAAGCA
GACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGATCACCTGCTCTTCCTGG
GCTTGGTCGTCGTGCGTGGCCTCATCAACCGCTCCTTGTGATGGATGCCTG-----------------------------
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>chr3A_948
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------------------------------------------------------------------TCATCGCAACAGCA
GC--AGCAGAGCAGAGCTATCTTCTTCTTCCATCTC------------------TCGTCGATGGCCAAGATCCAGCCCCT
TCCTTCCTCTCCC---------TGCTCCATCTCTTCCTCCGATGATCACCAGCAGGGCAGACA------------GGCGT
ACACGCTCTGGATGAAGTCGCTGGTGTTCAACGGCAACGGCTGCGCGGTGTACGGCCCAGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCG
CAAAGGC---GGCATGTTCAGGAGGTGGGAGGTCTGCCGGTGTACCCACGACGGAGGCGAGGGGGACGAGGCGACTCCTT
GGTTCAGCGTGCGCCGGGCCGAGAAGGGCGGGGCCGCAGTCACGATGCACGACGGCGCGGGGACGTGCTACACGATGGAC
GGA---TGCTC---GCGCAAGCCGGAGTACAGAATCCGCGACGTCGATGGCATGGTCGTGGCCGAGGTGGCGCGGAAGCA
GACGGCGGCGGGTGTGGTGCTCGGAGACGACGTGCTGACGCTGACGGTGGGGCCGGAGGTGGGCCACCTGCTCGTCTTGG
GCTTGGTCGCCGTGCGTGGTCTCATGAACGGATCCATGTGATAGATGCATGCA---------------------------
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>chr3D_948
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------------------------------------------------------------------TCATCGCAACAGCA
GC--AGCCGGGCAGAGCAATC-----------TTCTTCTTCGATCTCTCGTCATTCATCAATGGCCAAGATCCAGCCCCT
TCCTTCCTCTCCC---------TGCTCCA---CCTCTTCCTACGGAAACCAACAGAGCTCGCA------------GGCTT
ACACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCGCGGTGTACGGCCCAGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCCTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCG
CAAAGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTCCCGCTGCGCCCACAACGGCGGCCAGGACGAGGAGGCAACGCCGT
GGTTCAGAGTGCGCCGGGCCGAGAAGGGCGGGGCCGCCGTGGCGATGCACGGCGGCGCGGGGACGTGCTACACGATGGAC
GGATGCTGCGC---GCGCAAGCCGGAGTACAGAATCCGCGACGTGGATGGCACGGTCGTGGCGGAGGTGGCGCGGAAGCA
GACGACGGCGGGTGTGGTGCTCGGAGAGGACGTGCTGACGCTGACGGTGGGGCCGGAGGTGGGCCACCTGCTCGTCTTGG
GCTTGGTCGTTGTGCGTGGCCTCATGAACGGATCCATGTGATGGATG---------------------------------
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>chr3A_994
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-----------------------------------C------------------TCGTCCATGGCCAAGATCCAGCCCCT
CGCTGCCGCGGCC---------TCAC------CGTCGTCCTCCGATGATCAATGGAGGCAGCA------------GGCGT
ACACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAACGGCTGCACGGTGTACGGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGCGCCGGCAACGCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGCATGTTCAGGAGGTGGGAGGTCTGCCAGTGCGCCCACAACGGCGGCCAGGAGGAGGAGGCCACGCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGACGGAGCTGCCGTAGCGATGCACGGCGGCGCGGGGACGTGCTACACGATCGAC
GGGTGCTCTGC---CCGCAAATCGGAGTACAGAGTACGCGGCGTGGATGGCGCGGTGGTGGCAGAGGTCGCACGGAAGCA
GACGCCGGCGGGGGTGGTGCTGGGGGACGACGTGCTGACGCTGACGGTGGCGCCGGAGGTGGATCACCTGCTCTTCCTGG
GTTTGGTCGTCGTGCGTGGCCTCATCGACCGCTCCTTGTGATGCCTGGATGC----------------------------
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>chr3B_994
--------------------------------------------------------------------------------
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-----------------------------------C------------------TCGTCCATGGCCAAGATCCAGCCCCT
CGCTGCCGCGGCC---------TCAC------CGTCGTCCTCTGATGATCAACGGAGCCAGCA------------GGCGT
ACACGGTGTGGATGAAGTCGCTGGTCTTCAACGGCAATGGCTGCACGGTGTACAGCCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTAAGGGGAACGCCCTCATCAGGATCAGGCG
CAAGGGCTTCGGGATGTTCAGGAGCTGGGAGGTCTGTCGCTGCGCCCACAACGGCGGCCAGGAGGAGGAGGCCACGCAGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCGGAGCCGCCGTGGCGATGCACGGCGGCACGGGGACGTGCTACACGATCGAC
GGGTGCTCTGC---CCGCAAGTCGGAGTACAGCGTACGCGGCGTGGATGGCGCGGTGGTGGCAGAGGTCGCACGGAAGCA
GACGCCGGCGGGGGTGGTGCTGGGGGAGGACGTGCTGGCGCTGACGGTGGCGCCGGAGGCGGATCACCTGCTCTTCCTGG
GTTTGGTCGTCGTGCGTGGCCTCATCAACCGCTCCTTGTGATGGATGCCTGAAATGC-----------------------
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>chr3D_999
--------------------------------------------------------------------------------
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----------------------------------------------------------CAATGGCCAAGATCCAGCCTCT
CGCTGCCGCCGCC---------TCGC------TGTGTTCCTCCGATGATCACCGGAGGCAGCAGGGCAGGCAGCTGGCGT
ACACGGTGTGGATGAAGTCGCTCGTGTTCAACGGCAACGGCTGCACGGTGTACGACCCCGACGGCGCCGTCGCCTTCCGC
GTCGACAACTACGGCTGCAGGGGCGGCCGCGAGGTCTTCTTCATGGACCGTCAGGGGAACGCACTCATCAGGATCAGACG
CAAGGGCTTCGGCATGTTCAGAAGGTGGGAGGTCTGTCGCTGCGCCCACAACGGCGGCCAGGAAGAGGAGGCCACGCCGT
GGTTCAGCGTGCGGCGGGCCGAGAAGGGCGGGGCCACCATGGCCATGCACGGCGGCGCCGGGACGTGCTACACGATCGAC
GGGTGCTCTGC---CCGCAAGTCGGAGTACAGAGTACGTGGCGTGGATGGCGCGGTGGTGGCGGAGGTCGCACGGAAGCA
GACGGCGGCGGGGGTGGTGCTCGGGGAGGACGTGCTGACGCTGAAGGTGGCGCCGGAGGTGGATCACCTGCTCTTCCTGG
GTTTGGTCGTCGTGCGTGGCCTCATCAACCGCTCCTTGTGATGGATGGATG-----------------------------
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-------------------
>SNPs
-----------------------------------------------------------------S--------------
--S------------S---S--S---------------------------------------------------------
------S--S---S------S-S-S---------SS---------------S-S-----------------S--------
-------S-------------------------S--------------S---S-------------------S-SS----
----------------S-------S---S-------S---------------------------S---------------
--------S-------------------------------------------------------SSSSS-----------
--------------------S--S---------S-------------S--------------------------------
--------------------------------------------------S-----------------------------
------S--------------------------------------------------------S----------------
---------------S----------------------------------------S--------------SSS---S--
------------------------------------------------------------------------------S-
---------------SS---------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
----------------S---------------S-S---------------------------------------------
----------------------------S-----S---S-------------S---------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------------------------------------------------------------S------
------------S---------S---------------------------------------------------------
---------------------------------------------------------------S--------S-SS----
------------------------------------------------------SSSSSS-SSS--------------S-
---S-------------S---------S--------S-S-SSSSSSSS-S------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
---S--S--S-------------------------S-------------------S----S-------------------
----SSS------S----------------------S-----------SSSS------------------------S-SS
SS----S-------S--------------S------------------------S-------------------------
----------S--S--S--------------------------------SSSS---------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_798
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----------------------------------------------------------ATCGGATGCTGACGTAGAGC--
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>reverse_3429
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--------------------------------------------------------------------CGTTGCTGCGAA
AACCTTGT------------------------------------------------------------------------
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-------------------
