Multiple sequence alignment - TraesCS3A01G446000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G446000 chr3A 100.000 3119 0 0 1 3119 686731790 686728672 0.000000e+00 5760.0
1 TraesCS3A01G446000 chr3A 90.984 122 8 2 1 121 310727941 310728060 8.950000e-36 161.0
2 TraesCS3A01G446000 chr3A 88.281 128 12 3 1 126 26193224 26193350 1.940000e-32 150.0
3 TraesCS3A01G446000 chr3D 92.587 2064 60 30 420 2394 549376388 549374329 0.000000e+00 2878.0
4 TraesCS3A01G446000 chr3D 89.947 189 18 1 119 307 549377941 549377754 3.110000e-60 243.0
5 TraesCS3A01G446000 chr3B 94.751 1524 31 20 907 2394 728813155 728811645 0.000000e+00 2326.0
6 TraesCS3A01G446000 chr3B 92.982 171 11 1 453 623 728815770 728815601 6.680000e-62 248.0
7 TraesCS3A01G446000 chr3B 83.088 272 13 8 624 866 728813690 728813423 1.880000e-52 217.0
8 TraesCS3A01G446000 chr3B 88.679 106 12 0 304 409 728816982 728816877 2.520000e-26 130.0
9 TraesCS3A01G446000 chrUn 95.212 543 19 2 2575 3116 79565143 79564607 0.000000e+00 852.0
10 TraesCS3A01G446000 chrUn 92.623 122 8 1 2434 2554 79565332 79565211 1.150000e-39 174.0
11 TraesCS3A01G446000 chr7A 94.746 552 22 2 2569 3119 726138890 726139435 0.000000e+00 852.0
12 TraesCS3A01G446000 chr7A 95.312 128 6 0 2427 2554 726138701 726138828 1.470000e-48 204.0
13 TraesCS3A01G446000 chr7A 80.508 236 33 10 471 696 650438910 650438678 5.350000e-38 169.0
14 TraesCS3A01G446000 chr2B 95.055 546 19 4 2575 3119 439365259 439364721 0.000000e+00 852.0
15 TraesCS3A01G446000 chr2B 94.872 546 21 2 2575 3119 494280954 494280415 0.000000e+00 846.0
16 TraesCS3A01G446000 chr2B 82.937 252 25 10 417 650 28729785 28730036 8.760000e-51 211.0
17 TraesCS3A01G446000 chr2B 94.690 113 5 1 2443 2554 439365439 439365327 1.150000e-39 174.0
18 TraesCS3A01G446000 chr7B 94.565 552 22 3 2569 3119 648395023 648395567 0.000000e+00 846.0
19 TraesCS3A01G446000 chr7B 94.384 552 24 2 2569 3119 119256056 119256601 0.000000e+00 841.0
20 TraesCS3A01G446000 chr7B 97.170 106 3 0 2449 2554 707650462 707650567 2.470000e-41 180.0
21 TraesCS3A01G446000 chr7B 93.805 113 4 3 2443 2554 75063471 75063361 1.920000e-37 167.0
22 TraesCS3A01G446000 chr6A 94.689 546 22 2 2575 3119 466704114 466703575 0.000000e+00 841.0
23 TraesCS3A01G446000 chr6A 82.051 117 19 2 5 119 86361413 86361297 7.120000e-17 99.0
24 TraesCS3A01G446000 chr5B 94.384 552 24 2 2569 3119 344305013 344305558 0.000000e+00 841.0
25 TraesCS3A01G446000 chr5B 92.857 112 4 4 2445 2554 344304842 344304951 3.220000e-35 159.0
26 TraesCS3A01G446000 chr5B 83.621 116 18 1 8 122 460657860 460657975 1.180000e-19 108.0
27 TraesCS3A01G446000 chr5A 94.689 546 19 3 2575 3119 10721955 10721419 0.000000e+00 839.0
28 TraesCS3A01G446000 chr5A 96.610 118 4 0 2437 2554 601167125 601167242 2.450000e-46 196.0
29 TraesCS3A01G446000 chr5A 95.575 113 4 1 2443 2554 10722135 10722023 2.470000e-41 180.0
30 TraesCS3A01G446000 chr5D 74.413 895 198 27 1121 1997 560010915 560010034 3.830000e-94 355.0
31 TraesCS3A01G446000 chr2D 86.316 190 22 4 470 655 624186853 624186664 1.470000e-48 204.0
32 TraesCS3A01G446000 chr7D 83.258 221 28 8 472 684 94000211 93999992 8.830000e-46 195.0
33 TraesCS3A01G446000 chr7D 85.124 121 17 1 1 120 181598953 181599073 4.220000e-24 122.0
34 TraesCS3A01G446000 chr7D 84.034 119 16 3 5 121 236179519 236179402 9.140000e-21 111.0
35 TraesCS3A01G446000 chr1A 96.396 111 4 0 2444 2554 7695875 7695765 1.910000e-42 183.0
36 TraesCS3A01G446000 chr4B 84.103 195 23 7 470 658 453258626 453258434 6.870000e-42 182.0
37 TraesCS3A01G446000 chr1B 84.409 186 25 3 470 651 511445748 511445563 2.470000e-41 180.0
38 TraesCS3A01G446000 chr4A 77.740 292 63 2 1123 1413 714099828 714100118 8.890000e-41 178.0
39 TraesCS3A01G446000 chr4A 76.639 244 47 9 1802 2040 604670056 604670294 3.270000e-25 126.0
40 TraesCS3A01G446000 chr6D 77.941 272 59 1 1115 1386 469066904 469067174 5.350000e-38 169.0
41 TraesCS3A01G446000 chr2A 80.169 237 34 12 467 691 8554431 8554666 6.920000e-37 165.0
42 TraesCS3A01G446000 chr2A 84.127 126 16 3 5 128 13616343 13616466 5.460000e-23 119.0
43 TraesCS3A01G446000 chr1D 83.471 121 19 1 1 120 409017552 409017432 9.140000e-21 111.0
44 TraesCS3A01G446000 chr4D 82.143 112 18 2 13 123 426774822 426774932 9.210000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G446000 chr3A 686728672 686731790 3118 True 5760.00 5760 100.0000 1 3119 1 chr3A.!!$R1 3118
1 TraesCS3A01G446000 chr3D 549374329 549377941 3612 True 1560.50 2878 91.2670 119 2394 2 chr3D.!!$R1 2275
2 TraesCS3A01G446000 chr3B 728811645 728816982 5337 True 730.25 2326 89.8750 304 2394 4 chr3B.!!$R1 2090
3 TraesCS3A01G446000 chrUn 79564607 79565332 725 True 513.00 852 93.9175 2434 3116 2 chrUn.!!$R1 682
4 TraesCS3A01G446000 chr7A 726138701 726139435 734 False 528.00 852 95.0290 2427 3119 2 chr7A.!!$F1 692
5 TraesCS3A01G446000 chr2B 494280415 494280954 539 True 846.00 846 94.8720 2575 3119 1 chr2B.!!$R1 544
6 TraesCS3A01G446000 chr2B 439364721 439365439 718 True 513.00 852 94.8725 2443 3119 2 chr2B.!!$R2 676
7 TraesCS3A01G446000 chr7B 648395023 648395567 544 False 846.00 846 94.5650 2569 3119 1 chr7B.!!$F2 550
8 TraesCS3A01G446000 chr7B 119256056 119256601 545 False 841.00 841 94.3840 2569 3119 1 chr7B.!!$F1 550
9 TraesCS3A01G446000 chr6A 466703575 466704114 539 True 841.00 841 94.6890 2575 3119 1 chr6A.!!$R2 544
10 TraesCS3A01G446000 chr5B 344304842 344305558 716 False 500.00 841 93.6205 2445 3119 2 chr5B.!!$F2 674
11 TraesCS3A01G446000 chr5A 10721419 10722135 716 True 509.50 839 95.1320 2443 3119 2 chr5A.!!$R1 676
12 TraesCS3A01G446000 chr5D 560010034 560010915 881 True 355.00 355 74.4130 1121 1997 1 chr5D.!!$R1 876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 4882 0.105453 ACGAGATATGCCCCACTCCT 60.105 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 6794 0.459237 CAGTCTCCGGCAGTAGCTTG 60.459 60.0 0.0 0.0 41.7 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.674933 GCAAGAGGGATTAAACTTATCCG 57.325 43.478 0.00 0.00 35.37 4.18
23 24 4.515567 GCAAGAGGGATTAAACTTATCCGG 59.484 45.833 0.00 0.00 35.37 5.14
24 25 5.681639 CAAGAGGGATTAAACTTATCCGGT 58.318 41.667 0.00 0.00 35.37 5.28
25 26 5.970501 AGAGGGATTAAACTTATCCGGTT 57.029 39.130 0.00 0.00 35.37 4.44
26 27 6.323210 AGAGGGATTAAACTTATCCGGTTT 57.677 37.500 0.00 0.00 39.70 3.27
27 28 6.728411 AGAGGGATTAAACTTATCCGGTTTT 58.272 36.000 0.00 0.00 37.88 2.43
28 29 6.827251 AGAGGGATTAAACTTATCCGGTTTTC 59.173 38.462 0.00 0.00 37.88 2.29
29 30 6.486941 AGGGATTAAACTTATCCGGTTTTCA 58.513 36.000 0.00 0.00 37.88 2.69
30 31 6.949463 AGGGATTAAACTTATCCGGTTTTCAA 59.051 34.615 0.00 0.00 37.88 2.69
31 32 7.452189 AGGGATTAAACTTATCCGGTTTTCAAA 59.548 33.333 0.00 0.00 37.88 2.69
32 33 7.758076 GGGATTAAACTTATCCGGTTTTCAAAG 59.242 37.037 0.00 0.00 37.88 2.77
33 34 8.301720 GGATTAAACTTATCCGGTTTTCAAAGT 58.698 33.333 0.00 0.00 37.88 2.66
34 35 9.687210 GATTAAACTTATCCGGTTTTCAAAGTT 57.313 29.630 0.00 3.33 38.45 2.66
35 36 8.859517 TTAAACTTATCCGGTTTTCAAAGTTG 57.140 30.769 0.00 0.00 37.27 3.16
36 37 6.702716 AACTTATCCGGTTTTCAAAGTTGA 57.297 33.333 0.00 0.00 36.21 3.18
37 38 6.313744 ACTTATCCGGTTTTCAAAGTTGAG 57.686 37.500 0.00 0.00 38.61 3.02
38 39 5.240844 ACTTATCCGGTTTTCAAAGTTGAGG 59.759 40.000 0.00 0.00 38.61 3.86
39 40 2.303175 TCCGGTTTTCAAAGTTGAGGG 58.697 47.619 0.00 0.00 38.61 4.30
40 41 2.092321 TCCGGTTTTCAAAGTTGAGGGA 60.092 45.455 0.00 0.00 38.61 4.20
41 42 2.034179 CCGGTTTTCAAAGTTGAGGGAC 59.966 50.000 0.00 0.00 38.61 4.46
43 44 4.131596 CGGTTTTCAAAGTTGAGGGACTA 58.868 43.478 0.00 0.00 41.55 2.59
44 45 4.577283 CGGTTTTCAAAGTTGAGGGACTAA 59.423 41.667 0.00 0.00 41.55 2.24
45 46 5.277828 CGGTTTTCAAAGTTGAGGGACTAAG 60.278 44.000 0.00 0.00 41.55 2.18
46 47 5.593095 GGTTTTCAAAGTTGAGGGACTAAGT 59.407 40.000 0.00 0.00 41.55 2.24
47 48 6.096423 GGTTTTCAAAGTTGAGGGACTAAGTT 59.904 38.462 0.00 0.00 41.55 2.66
48 49 7.363530 GGTTTTCAAAGTTGAGGGACTAAGTTT 60.364 37.037 0.00 0.00 41.55 2.66
49 50 7.712204 TTTCAAAGTTGAGGGACTAAGTTTT 57.288 32.000 0.00 0.00 41.55 2.43
50 51 8.810990 TTTCAAAGTTGAGGGACTAAGTTTTA 57.189 30.769 0.00 0.00 41.55 1.52
51 52 7.797038 TCAAAGTTGAGGGACTAAGTTTTAC 57.203 36.000 0.00 0.00 41.55 2.01
52 53 7.571025 TCAAAGTTGAGGGACTAAGTTTTACT 58.429 34.615 0.00 0.00 41.55 2.24
53 54 7.497909 TCAAAGTTGAGGGACTAAGTTTTACTG 59.502 37.037 0.00 0.00 41.55 2.74
54 55 5.866207 AGTTGAGGGACTAAGTTTTACTGG 58.134 41.667 0.00 0.00 41.55 4.00
55 56 5.368816 AGTTGAGGGACTAAGTTTTACTGGT 59.631 40.000 0.00 0.00 41.55 4.00
56 57 5.899631 TGAGGGACTAAGTTTTACTGGTT 57.100 39.130 0.00 0.00 41.55 3.67
57 58 6.256643 TGAGGGACTAAGTTTTACTGGTTT 57.743 37.500 0.00 0.00 41.55 3.27
58 59 6.665695 TGAGGGACTAAGTTTTACTGGTTTT 58.334 36.000 0.00 0.00 41.55 2.43
59 60 6.544564 TGAGGGACTAAGTTTTACTGGTTTTG 59.455 38.462 0.00 0.00 41.55 2.44
60 61 6.665695 AGGGACTAAGTTTTACTGGTTTTGA 58.334 36.000 0.00 0.00 36.02 2.69
61 62 7.120716 AGGGACTAAGTTTTACTGGTTTTGAA 58.879 34.615 0.00 0.00 36.02 2.69
62 63 7.284716 AGGGACTAAGTTTTACTGGTTTTGAAG 59.715 37.037 0.00 0.00 36.02 3.02
63 64 7.067859 GGGACTAAGTTTTACTGGTTTTGAAGT 59.932 37.037 0.00 0.00 0.00 3.01
64 65 8.464404 GGACTAAGTTTTACTGGTTTTGAAGTT 58.536 33.333 0.00 0.00 0.00 2.66
65 66 9.285770 GACTAAGTTTTACTGGTTTTGAAGTTG 57.714 33.333 0.00 0.00 0.00 3.16
66 67 9.016438 ACTAAGTTTTACTGGTTTTGAAGTTGA 57.984 29.630 0.00 0.00 0.00 3.18
67 68 9.503427 CTAAGTTTTACTGGTTTTGAAGTTGAG 57.497 33.333 0.00 0.00 0.00 3.02
68 69 6.863275 AGTTTTACTGGTTTTGAAGTTGAGG 58.137 36.000 0.00 0.00 0.00 3.86
69 70 5.845391 TTTACTGGTTTTGAAGTTGAGGG 57.155 39.130 0.00 0.00 0.00 4.30
70 71 3.662759 ACTGGTTTTGAAGTTGAGGGA 57.337 42.857 0.00 0.00 0.00 4.20
71 72 4.184649 ACTGGTTTTGAAGTTGAGGGAT 57.815 40.909 0.00 0.00 0.00 3.85
72 73 4.546674 ACTGGTTTTGAAGTTGAGGGATT 58.453 39.130 0.00 0.00 0.00 3.01
73 74 5.701224 ACTGGTTTTGAAGTTGAGGGATTA 58.299 37.500 0.00 0.00 0.00 1.75
74 75 6.314917 ACTGGTTTTGAAGTTGAGGGATTAT 58.685 36.000 0.00 0.00 0.00 1.28
75 76 6.782494 ACTGGTTTTGAAGTTGAGGGATTATT 59.218 34.615 0.00 0.00 0.00 1.40
76 77 7.290014 ACTGGTTTTGAAGTTGAGGGATTATTT 59.710 33.333 0.00 0.00 0.00 1.40
77 78 8.028652 TGGTTTTGAAGTTGAGGGATTATTTT 57.971 30.769 0.00 0.00 0.00 1.82
78 79 9.148879 TGGTTTTGAAGTTGAGGGATTATTTTA 57.851 29.630 0.00 0.00 0.00 1.52
105 106 7.416964 TTCTTGAAAGAATTGAGGGACAAAA 57.583 32.000 1.31 0.00 39.95 2.44
106 107 7.416964 TCTTGAAAGAATTGAGGGACAAAAA 57.583 32.000 0.00 0.00 42.03 1.94
142 143 6.403418 CCCTTTATTTTATGTTTACGCACGGA 60.403 38.462 0.00 0.00 0.00 4.69
153 154 2.806856 CGCACGGAAGCAGATGAGC 61.807 63.158 0.00 0.00 0.00 4.26
157 158 0.610174 ACGGAAGCAGATGAGCTCAA 59.390 50.000 22.50 4.23 45.89 3.02
159 160 1.015868 GGAAGCAGATGAGCTCAAGC 58.984 55.000 22.50 23.23 45.89 4.01
179 180 1.348250 CCGTTTCATCGCGTCCATG 59.652 57.895 5.77 2.43 0.00 3.66
214 215 3.700539 CTCTGCTTTCTCTCTCCAGATCA 59.299 47.826 0.00 0.00 32.69 2.92
215 216 3.446873 TCTGCTTTCTCTCTCCAGATCAC 59.553 47.826 0.00 0.00 0.00 3.06
222 223 2.426738 CTCTCTCCAGATCACGCTCTTT 59.573 50.000 0.00 0.00 0.00 2.52
227 228 1.740025 CCAGATCACGCTCTTTTTCCC 59.260 52.381 0.00 0.00 0.00 3.97
233 234 0.613777 ACGCTCTTTTTCCCGAGGAT 59.386 50.000 0.00 0.00 0.00 3.24
235 236 2.202566 CGCTCTTTTTCCCGAGGATAC 58.797 52.381 0.00 0.00 0.00 2.24
247 248 0.464452 GAGGATACCCGGTTCCTGTG 59.536 60.000 19.40 0.00 42.48 3.66
272 273 2.548875 CTACACCTCATCTCTGCAAGC 58.451 52.381 0.00 0.00 0.00 4.01
275 276 2.178890 CCTCATCTCTGCAAGCGGC 61.179 63.158 0.00 0.00 45.13 6.53
276 277 1.153409 CTCATCTCTGCAAGCGGCT 60.153 57.895 0.00 0.00 45.15 5.52
277 278 1.429927 CTCATCTCTGCAAGCGGCTG 61.430 60.000 1.81 0.00 45.15 4.85
278 279 2.823147 ATCTCTGCAAGCGGCTGC 60.823 61.111 10.33 10.33 45.15 5.25
281 282 4.648626 TCTGCAAGCGGCTGCCTT 62.649 61.111 15.55 5.08 45.15 4.35
282 283 3.677648 CTGCAAGCGGCTGCCTTT 61.678 61.111 15.55 8.27 45.15 3.11
283 284 3.216944 CTGCAAGCGGCTGCCTTTT 62.217 57.895 15.55 7.89 45.15 2.27
284 285 2.431430 GCAAGCGGCTGCCTTTTC 60.431 61.111 15.55 1.99 44.31 2.29
285 286 2.259511 CAAGCGGCTGCCTTTTCC 59.740 61.111 15.55 0.00 44.31 3.13
286 287 2.203480 AAGCGGCTGCCTTTTCCA 60.203 55.556 15.55 0.00 44.31 3.53
287 288 1.607467 AAGCGGCTGCCTTTTCCAT 60.607 52.632 15.55 0.00 44.31 3.41
288 289 1.598701 AAGCGGCTGCCTTTTCCATC 61.599 55.000 15.55 0.00 44.31 3.51
289 290 2.048603 GCGGCTGCCTTTTCCATCT 61.049 57.895 17.92 0.00 33.98 2.90
290 291 1.997928 GCGGCTGCCTTTTCCATCTC 61.998 60.000 17.92 0.00 33.98 2.75
291 292 0.393537 CGGCTGCCTTTTCCATCTCT 60.394 55.000 17.92 0.00 0.00 3.10
292 293 1.387539 GGCTGCCTTTTCCATCTCTC 58.612 55.000 12.43 0.00 0.00 3.20
293 294 1.064832 GGCTGCCTTTTCCATCTCTCT 60.065 52.381 12.43 0.00 0.00 3.10
294 295 2.287769 GCTGCCTTTTCCATCTCTCTC 58.712 52.381 0.00 0.00 0.00 3.20
295 296 2.916640 CTGCCTTTTCCATCTCTCTCC 58.083 52.381 0.00 0.00 0.00 3.71
296 297 2.504996 CTGCCTTTTCCATCTCTCTCCT 59.495 50.000 0.00 0.00 0.00 3.69
297 298 2.503356 TGCCTTTTCCATCTCTCTCCTC 59.497 50.000 0.00 0.00 0.00 3.71
298 299 2.158827 GCCTTTTCCATCTCTCTCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
299 300 3.110705 CCTTTTCCATCTCTCTCCTCCA 58.889 50.000 0.00 0.00 0.00 3.86
300 301 3.118445 CCTTTTCCATCTCTCTCCTCCAC 60.118 52.174 0.00 0.00 0.00 4.02
301 302 1.769026 TTCCATCTCTCTCCTCCACG 58.231 55.000 0.00 0.00 0.00 4.94
302 303 0.106469 TCCATCTCTCTCCTCCACGG 60.106 60.000 0.00 0.00 0.00 4.94
334 335 2.363018 TCTCTCCTCCACGGCTGG 60.363 66.667 0.00 0.00 39.23 4.85
339 340 4.394712 CCTCCACGGCTGGTCACC 62.395 72.222 0.00 0.00 38.90 4.02
343 344 2.425592 CACGGCTGGTCACCTTCA 59.574 61.111 0.00 0.00 0.00 3.02
344 345 1.961277 CACGGCTGGTCACCTTCAC 60.961 63.158 0.00 0.00 0.00 3.18
356 357 2.738521 CTTCACCGTGGACCTGCG 60.739 66.667 0.00 0.00 0.00 5.18
405 406 2.360165 CCTTGCCTAATGAATCACTGCC 59.640 50.000 0.00 0.00 0.00 4.85
411 412 1.913778 AATGAATCACTGCCAGTGCA 58.086 45.000 20.05 12.54 45.54 4.57
566 2749 8.680039 CCATGCATGGGAAAATATTTTTATGT 57.320 30.769 34.31 3.94 44.31 2.29
690 4784 3.674997 TGTCAACTAATTCCCTCAGCAC 58.325 45.455 0.00 0.00 0.00 4.40
691 4785 3.072330 TGTCAACTAATTCCCTCAGCACA 59.928 43.478 0.00 0.00 0.00 4.57
692 4786 3.686726 GTCAACTAATTCCCTCAGCACAG 59.313 47.826 0.00 0.00 0.00 3.66
693 4787 2.409948 ACTAATTCCCTCAGCACAGC 57.590 50.000 0.00 0.00 0.00 4.40
734 4841 5.407407 TCGGATATTAGATTCTTCCTGCC 57.593 43.478 0.00 0.00 0.00 4.85
735 4842 4.838423 TCGGATATTAGATTCTTCCTGCCA 59.162 41.667 0.00 0.00 0.00 4.92
771 4882 0.105453 ACGAGATATGCCCCACTCCT 60.105 55.000 0.00 0.00 0.00 3.69
782 4893 1.062428 CCCCACTCCTCATAGGTACCA 60.062 57.143 15.94 0.00 36.53 3.25
1351 5717 3.696045 TCTCTTTCCTCTCTGTCCTCAG 58.304 50.000 0.00 0.00 42.54 3.35
1376 5742 0.106918 ACAACACCAACATCACGGGT 60.107 50.000 0.00 0.00 34.59 5.28
1379 5745 0.536460 ACACCAACATCACGGGTTCC 60.536 55.000 0.00 0.00 31.03 3.62
1884 6255 5.048083 GCCATAGGACAGAACAATTTCACAA 60.048 40.000 0.00 0.00 33.72 3.33
2036 6407 1.937191 ATGGCCTTTTCGGGTCAATT 58.063 45.000 3.32 0.00 44.62 2.32
2055 6452 2.445682 TCCTAGAGCTCCTTGACCTC 57.554 55.000 10.93 0.00 0.00 3.85
2224 6621 3.243501 CCAAAACATGTTGACTGGACCAG 60.244 47.826 20.45 20.45 37.52 4.00
2230 6627 3.247948 TGTTGACTGGACCAGTACCTA 57.752 47.619 27.21 10.03 45.44 3.08
2259 6656 8.692710 ACTATCGGTAACATGAACTCTTTGATA 58.307 33.333 0.00 0.00 0.00 2.15
2320 6717 5.050295 GTCAACTTCTTACCCGTTTTCTCTG 60.050 44.000 0.00 0.00 0.00 3.35
2373 6770 5.813080 AGTCAAATAATTTCACGGGTAGC 57.187 39.130 0.00 0.00 0.00 3.58
2397 6794 2.285977 CCTAACAATGTAGGGAACGGC 58.714 52.381 0.00 0.00 37.57 5.68
2398 6795 2.355310 CCTAACAATGTAGGGAACGGCA 60.355 50.000 0.00 0.00 37.57 5.69
2399 6796 2.279935 AACAATGTAGGGAACGGCAA 57.720 45.000 0.00 0.00 0.00 4.52
2400 6797 1.821216 ACAATGTAGGGAACGGCAAG 58.179 50.000 0.00 0.00 0.00 4.01
2401 6798 0.451783 CAATGTAGGGAACGGCAAGC 59.548 55.000 0.00 0.00 0.00 4.01
2402 6799 0.328258 AATGTAGGGAACGGCAAGCT 59.672 50.000 0.00 0.00 0.00 3.74
2403 6800 1.200519 ATGTAGGGAACGGCAAGCTA 58.799 50.000 0.00 0.00 0.00 3.32
2404 6801 0.248289 TGTAGGGAACGGCAAGCTAC 59.752 55.000 0.00 0.00 0.00 3.58
2405 6802 0.535797 GTAGGGAACGGCAAGCTACT 59.464 55.000 0.00 0.00 0.00 2.57
2406 6803 0.535335 TAGGGAACGGCAAGCTACTG 59.465 55.000 0.00 0.00 0.00 2.74
2407 6804 2.399356 GGGAACGGCAAGCTACTGC 61.399 63.158 1.52 1.52 41.85 4.40
2413 6810 2.579201 GCAAGCTACTGCCGGAGA 59.421 61.111 5.05 0.00 40.80 3.71
2414 6811 1.811679 GCAAGCTACTGCCGGAGAC 60.812 63.158 5.05 0.00 40.80 3.36
2415 6812 1.893786 CAAGCTACTGCCGGAGACT 59.106 57.895 5.05 0.00 40.80 3.24
2416 6813 0.459237 CAAGCTACTGCCGGAGACTG 60.459 60.000 5.05 0.00 40.80 3.51
2417 6814 1.608717 AAGCTACTGCCGGAGACTGG 61.609 60.000 5.05 0.00 40.80 4.00
2418 6815 2.052690 GCTACTGCCGGAGACTGGA 61.053 63.158 5.05 0.00 0.00 3.86
2419 6816 2.010582 GCTACTGCCGGAGACTGGAG 62.011 65.000 5.05 0.00 0.00 3.86
2420 6817 1.379977 TACTGCCGGAGACTGGAGG 60.380 63.158 5.05 0.00 0.00 4.30
2421 6818 1.859841 TACTGCCGGAGACTGGAGGA 61.860 60.000 5.05 0.00 0.00 3.71
2422 6819 2.363018 TGCCGGAGACTGGAGGAG 60.363 66.667 5.05 0.00 0.00 3.69
2423 6820 2.043852 GCCGGAGACTGGAGGAGA 60.044 66.667 5.05 0.00 0.00 3.71
2424 6821 2.419739 GCCGGAGACTGGAGGAGAC 61.420 68.421 5.05 0.00 0.00 3.36
2425 6822 1.755008 CCGGAGACTGGAGGAGACC 60.755 68.421 0.00 0.00 0.00 3.85
2793 7238 2.529389 GAGGGTCCCTGGGTGTGT 60.529 66.667 17.72 0.00 31.76 3.72
2935 7381 1.004277 GACGTCTGTCAAGGTCTGCG 61.004 60.000 8.70 0.00 44.82 5.18
2936 7382 1.007271 CGTCTGTCAAGGTCTGCGT 60.007 57.895 0.00 0.00 0.00 5.24
2937 7383 1.004277 CGTCTGTCAAGGTCTGCGTC 61.004 60.000 0.00 0.00 0.00 5.19
2938 7384 0.315568 GTCTGTCAAGGTCTGCGTCT 59.684 55.000 0.00 0.00 0.00 4.18
2939 7385 0.315251 TCTGTCAAGGTCTGCGTCTG 59.685 55.000 0.00 0.00 0.00 3.51
2940 7386 1.287730 CTGTCAAGGTCTGCGTCTGC 61.288 60.000 0.00 0.00 43.20 4.26
2946 7392 2.659610 GTCTGCGTCTGCCCTTCT 59.340 61.111 0.00 0.00 41.78 2.85
3104 7550 3.423154 GACGGCGTGCCCTTCTTG 61.423 66.667 21.19 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.515567 CCGGATAAGTTTAATCCCTCTTGC 59.484 45.833 0.00 0.00 0.00 4.01
1 2 5.681639 ACCGGATAAGTTTAATCCCTCTTG 58.318 41.667 9.46 0.00 0.00 3.02
2 3 5.970501 ACCGGATAAGTTTAATCCCTCTT 57.029 39.130 9.46 0.00 0.00 2.85
3 4 5.970501 AACCGGATAAGTTTAATCCCTCT 57.029 39.130 9.46 0.00 0.00 3.69
4 5 6.600427 TGAAAACCGGATAAGTTTAATCCCTC 59.400 38.462 9.46 0.00 36.44 4.30
5 6 6.486941 TGAAAACCGGATAAGTTTAATCCCT 58.513 36.000 9.46 0.00 36.44 4.20
6 7 6.762702 TGAAAACCGGATAAGTTTAATCCC 57.237 37.500 9.46 0.00 36.44 3.85
7 8 8.301720 ACTTTGAAAACCGGATAAGTTTAATCC 58.698 33.333 9.46 0.00 36.44 3.01
8 9 9.687210 AACTTTGAAAACCGGATAAGTTTAATC 57.313 29.630 9.46 0.00 36.44 1.75
9 10 9.471084 CAACTTTGAAAACCGGATAAGTTTAAT 57.529 29.630 9.46 0.00 36.44 1.40
10 11 8.684520 TCAACTTTGAAAACCGGATAAGTTTAA 58.315 29.630 9.46 0.00 36.44 1.52
11 12 8.223177 TCAACTTTGAAAACCGGATAAGTTTA 57.777 30.769 9.46 0.00 36.44 2.01
12 13 7.102847 TCAACTTTGAAAACCGGATAAGTTT 57.897 32.000 9.46 0.00 39.07 2.66
13 14 6.238925 CCTCAACTTTGAAAACCGGATAAGTT 60.239 38.462 9.46 6.48 36.64 2.66
14 15 5.240844 CCTCAACTTTGAAAACCGGATAAGT 59.759 40.000 9.46 0.00 36.64 2.24
15 16 5.335661 CCCTCAACTTTGAAAACCGGATAAG 60.336 44.000 9.46 0.00 36.64 1.73
16 17 4.521256 CCCTCAACTTTGAAAACCGGATAA 59.479 41.667 9.46 0.00 36.64 1.75
17 18 4.076394 CCCTCAACTTTGAAAACCGGATA 58.924 43.478 9.46 0.00 36.64 2.59
18 19 2.890945 CCCTCAACTTTGAAAACCGGAT 59.109 45.455 9.46 0.00 36.64 4.18
19 20 2.092321 TCCCTCAACTTTGAAAACCGGA 60.092 45.455 9.46 0.00 36.64 5.14
20 21 2.034179 GTCCCTCAACTTTGAAAACCGG 59.966 50.000 0.00 0.00 36.64 5.28
21 22 2.949644 AGTCCCTCAACTTTGAAAACCG 59.050 45.455 0.00 0.00 36.64 4.44
22 23 5.593095 ACTTAGTCCCTCAACTTTGAAAACC 59.407 40.000 0.00 0.00 36.64 3.27
23 24 6.694877 ACTTAGTCCCTCAACTTTGAAAAC 57.305 37.500 0.00 0.00 36.64 2.43
24 25 7.712204 AAACTTAGTCCCTCAACTTTGAAAA 57.288 32.000 0.00 0.00 36.64 2.29
25 26 7.712204 AAAACTTAGTCCCTCAACTTTGAAA 57.288 32.000 0.00 0.00 36.64 2.69
26 27 8.050930 AGTAAAACTTAGTCCCTCAACTTTGAA 58.949 33.333 0.00 0.00 36.64 2.69
27 28 7.497909 CAGTAAAACTTAGTCCCTCAACTTTGA 59.502 37.037 0.00 0.00 35.57 2.69
28 29 7.255139 CCAGTAAAACTTAGTCCCTCAACTTTG 60.255 40.741 0.00 0.00 0.00 2.77
29 30 6.771267 CCAGTAAAACTTAGTCCCTCAACTTT 59.229 38.462 0.00 0.00 0.00 2.66
30 31 6.126565 ACCAGTAAAACTTAGTCCCTCAACTT 60.127 38.462 0.00 0.00 0.00 2.66
31 32 5.368816 ACCAGTAAAACTTAGTCCCTCAACT 59.631 40.000 0.00 0.00 0.00 3.16
32 33 5.618236 ACCAGTAAAACTTAGTCCCTCAAC 58.382 41.667 0.00 0.00 0.00 3.18
33 34 5.899631 ACCAGTAAAACTTAGTCCCTCAA 57.100 39.130 0.00 0.00 0.00 3.02
34 35 5.899631 AACCAGTAAAACTTAGTCCCTCA 57.100 39.130 0.00 0.00 0.00 3.86
35 36 6.769341 TCAAAACCAGTAAAACTTAGTCCCTC 59.231 38.462 0.00 0.00 0.00 4.30
36 37 6.665695 TCAAAACCAGTAAAACTTAGTCCCT 58.334 36.000 0.00 0.00 0.00 4.20
37 38 6.947644 TCAAAACCAGTAAAACTTAGTCCC 57.052 37.500 0.00 0.00 0.00 4.46
38 39 7.993101 ACTTCAAAACCAGTAAAACTTAGTCC 58.007 34.615 0.00 0.00 0.00 3.85
39 40 9.285770 CAACTTCAAAACCAGTAAAACTTAGTC 57.714 33.333 0.00 0.00 0.00 2.59
40 41 9.016438 TCAACTTCAAAACCAGTAAAACTTAGT 57.984 29.630 0.00 0.00 0.00 2.24
41 42 9.503427 CTCAACTTCAAAACCAGTAAAACTTAG 57.497 33.333 0.00 0.00 0.00 2.18
42 43 8.463607 CCTCAACTTCAAAACCAGTAAAACTTA 58.536 33.333 0.00 0.00 0.00 2.24
43 44 7.320399 CCTCAACTTCAAAACCAGTAAAACTT 58.680 34.615 0.00 0.00 0.00 2.66
44 45 6.127451 CCCTCAACTTCAAAACCAGTAAAACT 60.127 38.462 0.00 0.00 0.00 2.66
45 46 6.040247 CCCTCAACTTCAAAACCAGTAAAAC 58.960 40.000 0.00 0.00 0.00 2.43
46 47 5.952947 TCCCTCAACTTCAAAACCAGTAAAA 59.047 36.000 0.00 0.00 0.00 1.52
47 48 5.511363 TCCCTCAACTTCAAAACCAGTAAA 58.489 37.500 0.00 0.00 0.00 2.01
48 49 5.118729 TCCCTCAACTTCAAAACCAGTAA 57.881 39.130 0.00 0.00 0.00 2.24
49 50 4.781775 TCCCTCAACTTCAAAACCAGTA 57.218 40.909 0.00 0.00 0.00 2.74
50 51 3.662759 TCCCTCAACTTCAAAACCAGT 57.337 42.857 0.00 0.00 0.00 4.00
51 52 6.840780 ATAATCCCTCAACTTCAAAACCAG 57.159 37.500 0.00 0.00 0.00 4.00
52 53 7.610580 AAATAATCCCTCAACTTCAAAACCA 57.389 32.000 0.00 0.00 0.00 3.67
82 83 7.416964 TTTTTGTCCCTCAATTCTTTCAAGA 57.583 32.000 0.00 0.00 35.84 3.02
111 112 8.030692 GCGTAAACATAAAATAAAGGGGAAACT 58.969 33.333 0.00 0.00 0.00 2.66
112 113 7.813627 TGCGTAAACATAAAATAAAGGGGAAAC 59.186 33.333 0.00 0.00 0.00 2.78
113 114 7.813627 GTGCGTAAACATAAAATAAAGGGGAAA 59.186 33.333 0.00 0.00 0.00 3.13
114 115 7.314393 GTGCGTAAACATAAAATAAAGGGGAA 58.686 34.615 0.00 0.00 0.00 3.97
115 116 6.403418 CGTGCGTAAACATAAAATAAAGGGGA 60.403 38.462 0.00 0.00 0.00 4.81
116 117 5.740099 CGTGCGTAAACATAAAATAAAGGGG 59.260 40.000 0.00 0.00 0.00 4.79
117 118 5.740099 CCGTGCGTAAACATAAAATAAAGGG 59.260 40.000 0.00 0.00 0.00 3.95
142 143 1.367599 GCGCTTGAGCTCATCTGCTT 61.368 55.000 19.04 0.00 44.17 3.91
153 154 1.059369 CGATGAAACGGCGCTTGAG 59.941 57.895 6.90 0.00 0.00 3.02
159 160 4.204891 GGACGCGATGAAACGGCG 62.205 66.667 15.93 4.80 38.52 6.46
167 168 0.659427 AAGAATGCATGGACGCGATG 59.341 50.000 15.93 7.64 33.35 3.84
179 180 6.011476 AGAAAGCAGAGAAAGAAAGAATGC 57.989 37.500 0.00 0.00 0.00 3.56
214 215 0.613777 ATCCTCGGGAAAAAGAGCGT 59.386 50.000 0.00 0.00 34.34 5.07
215 216 2.202566 GTATCCTCGGGAAAAAGAGCG 58.797 52.381 0.00 0.00 34.34 5.03
222 223 3.959462 CCGGGTATCCTCGGGAAA 58.041 61.111 0.00 0.00 42.32 3.13
227 228 1.041447 ACAGGAACCGGGTATCCTCG 61.041 60.000 19.45 16.78 44.26 4.63
233 234 3.065306 CTGCACAGGAACCGGGTA 58.935 61.111 6.32 0.00 0.00 3.69
253 254 1.134995 CGCTTGCAGAGATGAGGTGTA 60.135 52.381 0.00 0.00 0.00 2.90
265 266 3.216944 AAAAGGCAGCCGCTTGCAG 62.217 57.895 5.55 0.00 45.86 4.41
272 273 0.393537 AGAGATGGAAAAGGCAGCCG 60.394 55.000 5.55 0.00 0.00 5.52
275 276 2.504996 AGGAGAGAGATGGAAAAGGCAG 59.495 50.000 0.00 0.00 0.00 4.85
276 277 2.503356 GAGGAGAGAGATGGAAAAGGCA 59.497 50.000 0.00 0.00 0.00 4.75
277 278 2.158827 GGAGGAGAGAGATGGAAAAGGC 60.159 54.545 0.00 0.00 0.00 4.35
278 279 3.110705 TGGAGGAGAGAGATGGAAAAGG 58.889 50.000 0.00 0.00 0.00 3.11
279 280 3.430098 CGTGGAGGAGAGAGATGGAAAAG 60.430 52.174 0.00 0.00 0.00 2.27
280 281 2.497675 CGTGGAGGAGAGAGATGGAAAA 59.502 50.000 0.00 0.00 0.00 2.29
281 282 2.103373 CGTGGAGGAGAGAGATGGAAA 58.897 52.381 0.00 0.00 0.00 3.13
282 283 1.686428 CCGTGGAGGAGAGAGATGGAA 60.686 57.143 0.00 0.00 45.00 3.53
283 284 0.106469 CCGTGGAGGAGAGAGATGGA 60.106 60.000 0.00 0.00 45.00 3.41
284 285 1.743321 GCCGTGGAGGAGAGAGATGG 61.743 65.000 0.00 0.00 45.00 3.51
285 286 0.754957 AGCCGTGGAGGAGAGAGATG 60.755 60.000 0.00 0.00 45.00 2.90
286 287 0.754957 CAGCCGTGGAGGAGAGAGAT 60.755 60.000 0.00 0.00 45.00 2.75
287 288 1.379176 CAGCCGTGGAGGAGAGAGA 60.379 63.158 0.00 0.00 45.00 3.10
288 289 3.074999 GCAGCCGTGGAGGAGAGAG 62.075 68.421 0.00 0.00 45.00 3.20
289 290 3.071206 GCAGCCGTGGAGGAGAGA 61.071 66.667 0.00 0.00 45.00 3.10
290 291 4.154347 GGCAGCCGTGGAGGAGAG 62.154 72.222 0.00 0.00 45.00 3.20
291 292 4.704103 AGGCAGCCGTGGAGGAGA 62.704 66.667 5.55 0.00 45.00 3.71
292 293 2.754664 AAAAGGCAGCCGTGGAGGAG 62.755 60.000 5.55 0.00 45.00 3.69
293 294 2.748058 GAAAAGGCAGCCGTGGAGGA 62.748 60.000 5.55 0.00 45.00 3.71
294 295 2.282462 AAAAGGCAGCCGTGGAGG 60.282 61.111 5.55 0.00 44.97 4.30
295 296 2.335712 GGAAAAGGCAGCCGTGGAG 61.336 63.158 5.55 0.00 0.00 3.86
296 297 2.282180 GGAAAAGGCAGCCGTGGA 60.282 61.111 5.55 0.00 0.00 4.02
297 298 1.937546 GATGGAAAAGGCAGCCGTGG 61.938 60.000 5.55 0.00 0.00 4.94
298 299 0.962356 AGATGGAAAAGGCAGCCGTG 60.962 55.000 5.55 0.00 0.00 4.94
299 300 0.678048 GAGATGGAAAAGGCAGCCGT 60.678 55.000 5.55 0.00 0.00 5.68
300 301 0.393537 AGAGATGGAAAAGGCAGCCG 60.394 55.000 5.55 0.00 0.00 5.52
301 302 1.064832 AGAGAGATGGAAAAGGCAGCC 60.065 52.381 1.84 1.84 0.00 4.85
302 303 2.287769 GAGAGAGATGGAAAAGGCAGC 58.712 52.381 0.00 0.00 0.00 5.25
334 335 1.301479 GGTCCACGGTGAAGGTGAC 60.301 63.158 10.28 7.75 37.60 3.67
339 340 2.738521 CGCAGGTCCACGGTGAAG 60.739 66.667 10.28 0.00 0.00 3.02
356 357 2.798148 CTAGTGTGGACCGTTGCCCC 62.798 65.000 0.00 0.00 0.00 5.80
405 406 7.890515 TCTTAGATATATGGAACTCTGCACTG 58.109 38.462 0.00 0.00 0.00 3.66
409 410 7.475137 ACCTCTTAGATATATGGAACTCTGC 57.525 40.000 0.00 0.00 0.00 4.26
526 2709 2.223994 TGCATGGTCAATTGTTGTGGTG 60.224 45.455 5.13 0.42 0.00 4.17
539 2722 8.776470 CATAAAAATATTTTCCCATGCATGGTC 58.224 33.333 37.30 0.00 46.65 4.02
684 4778 2.588596 CCGTGTGTGCTGTGCTGA 60.589 61.111 0.00 0.00 0.00 4.26
690 4784 0.460284 GAGGATACCCGTGTGTGCTG 60.460 60.000 0.00 0.00 34.48 4.41
691 4785 0.902984 TGAGGATACCCGTGTGTGCT 60.903 55.000 0.00 0.00 36.99 4.40
692 4786 0.178068 ATGAGGATACCCGTGTGTGC 59.822 55.000 0.00 0.00 37.58 4.57
693 4787 2.550978 GAATGAGGATACCCGTGTGTG 58.449 52.381 0.00 0.00 37.58 3.82
734 4841 4.082733 TCTCGTCTAGACAATGAACCAGTG 60.083 45.833 22.37 4.40 35.46 3.66
735 4842 4.079970 TCTCGTCTAGACAATGAACCAGT 58.920 43.478 22.37 0.00 0.00 4.00
771 4882 3.688694 ACGCAACTTTGGTACCTATGA 57.311 42.857 14.36 0.00 0.00 2.15
782 4893 5.144359 GTCGTGATTATCAAACGCAACTTT 58.856 37.500 0.00 0.00 37.24 2.66
977 5334 4.898829 CACATTTCAAGTGTGGTTCAGA 57.101 40.909 5.12 0.00 42.43 3.27
1351 5717 3.546020 CGTGATGTTGGTGTTGTTGAGAC 60.546 47.826 0.00 0.00 0.00 3.36
1376 5742 4.879295 ACCTAAATCATGTGGGATGGAA 57.121 40.909 0.00 0.00 0.00 3.53
1379 5745 6.179906 AGTCTACCTAAATCATGTGGGATG 57.820 41.667 0.00 0.00 0.00 3.51
2055 6452 1.656652 CTGTTAGGTTGCAGGATCCG 58.343 55.000 5.98 2.47 0.00 4.18
2157 6554 4.330894 TCAGTTGCATTATCAAGAGAAGCG 59.669 41.667 0.00 0.00 0.00 4.68
2224 6621 7.502120 TCATGTTACCGATAGTTCTAGGTAC 57.498 40.000 0.00 0.00 38.77 3.34
2230 6627 6.777213 AGAGTTCATGTTACCGATAGTTCT 57.223 37.500 0.00 0.00 0.00 3.01
2320 6717 7.174080 GCTAAGGTATTGGAGATTTGGAAGATC 59.826 40.741 0.00 0.00 0.00 2.75
2396 6793 1.811679 GTCTCCGGCAGTAGCTTGC 60.812 63.158 0.00 1.52 43.34 4.01
2397 6794 0.459237 CAGTCTCCGGCAGTAGCTTG 60.459 60.000 0.00 0.00 41.70 4.01
2398 6795 1.608717 CCAGTCTCCGGCAGTAGCTT 61.609 60.000 0.00 0.00 41.70 3.74
2399 6796 2.055042 CCAGTCTCCGGCAGTAGCT 61.055 63.158 0.00 0.00 41.70 3.32
2400 6797 2.010582 CTCCAGTCTCCGGCAGTAGC 62.011 65.000 0.00 0.00 41.10 3.58
2401 6798 1.388065 CCTCCAGTCTCCGGCAGTAG 61.388 65.000 0.00 0.00 0.00 2.57
2402 6799 1.379977 CCTCCAGTCTCCGGCAGTA 60.380 63.158 0.00 0.00 0.00 2.74
2403 6800 2.681778 CCTCCAGTCTCCGGCAGT 60.682 66.667 0.00 0.00 0.00 4.40
2404 6801 2.363018 TCCTCCAGTCTCCGGCAG 60.363 66.667 0.00 0.00 0.00 4.85
2405 6802 2.363018 CTCCTCCAGTCTCCGGCA 60.363 66.667 0.00 0.00 0.00 5.69
2406 6803 2.043852 TCTCCTCCAGTCTCCGGC 60.044 66.667 0.00 0.00 0.00 6.13
2407 6804 1.755008 GGTCTCCTCCAGTCTCCGG 60.755 68.421 0.00 0.00 0.00 5.14
2408 6805 1.755008 GGGTCTCCTCCAGTCTCCG 60.755 68.421 0.00 0.00 0.00 4.63
2409 6806 1.382009 GGGGTCTCCTCCAGTCTCC 60.382 68.421 0.00 0.00 0.00 3.71
2410 6807 1.382009 GGGGGTCTCCTCCAGTCTC 60.382 68.421 0.00 0.00 35.33 3.36
2411 6808 1.864559 AGGGGGTCTCCTCCAGTCT 60.865 63.158 7.49 0.00 32.55 3.24
2412 6809 1.382009 GAGGGGGTCTCCTCCAGTC 60.382 68.421 5.59 0.00 45.75 3.51
2413 6810 2.781406 GAGGGGGTCTCCTCCAGT 59.219 66.667 5.59 0.00 45.75 4.00
2421 6818 3.369388 GGGAGGGAGAGGGGGTCT 61.369 72.222 0.00 0.00 38.71 3.85
2422 6819 4.500826 GGGGAGGGAGAGGGGGTC 62.501 77.778 0.00 0.00 0.00 4.46
2425 6822 4.825679 GTGGGGGAGGGAGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
2476 6874 1.559065 GGGAATCAACCCCCGAGACA 61.559 60.000 0.00 0.00 43.81 3.41
2793 7238 0.478072 CCCATAGGCAGGCCATACAA 59.522 55.000 13.63 0.00 38.92 2.41
2935 7381 0.617820 TGGGGAGTAGAAGGGCAGAC 60.618 60.000 0.00 0.00 0.00 3.51
2936 7382 0.617820 GTGGGGAGTAGAAGGGCAGA 60.618 60.000 0.00 0.00 0.00 4.26
2937 7383 1.627297 GGTGGGGAGTAGAAGGGCAG 61.627 65.000 0.00 0.00 0.00 4.85
2938 7384 1.615424 GGTGGGGAGTAGAAGGGCA 60.615 63.158 0.00 0.00 0.00 5.36
2939 7385 1.615424 TGGTGGGGAGTAGAAGGGC 60.615 63.158 0.00 0.00 0.00 5.19
2940 7386 1.272554 GGTGGTGGGGAGTAGAAGGG 61.273 65.000 0.00 0.00 0.00 3.95
2946 7392 0.416231 AAGCTAGGTGGTGGGGAGTA 59.584 55.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.