Multiple sequence alignment - TraesCS3A01G441300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G441300 chr3A 100.000 2374 0 0 1 2374 683441450 683443823 0.000000e+00 4385.0
1 TraesCS3A01G441300 chr3A 100.000 216 0 0 2767 2982 683444216 683444431 1.670000e-107 399.0
2 TraesCS3A01G441300 chr3A 100.000 34 0 0 307 340 501224057 501224024 2.480000e-06 63.9
3 TraesCS3A01G441300 chr3B 95.510 1804 68 12 567 2368 723795664 723797456 0.000000e+00 2870.0
4 TraesCS3A01G441300 chr3B 92.547 322 13 7 1 312 723795338 723795658 4.530000e-123 451.0
5 TraesCS3A01G441300 chr3B 85.000 220 24 6 2768 2982 182593057 182593272 6.470000e-52 215.0
6 TraesCS3A01G441300 chr3B 83.772 228 20 10 2769 2981 6968522 6968747 1.810000e-47 200.0
7 TraesCS3A01G441300 chr3B 80.913 241 32 8 2 235 167208296 167208529 8.490000e-41 178.0
8 TraesCS3A01G441300 chr3B 80.992 242 27 13 2 235 726149309 726149539 1.100000e-39 174.0
9 TraesCS3A01G441300 chr3B 93.333 75 5 0 345 419 250273217 250273143 8.740000e-21 111.0
10 TraesCS3A01G441300 chr3B 93.333 75 5 0 345 419 628103989 628103915 8.740000e-21 111.0
11 TraesCS3A01G441300 chr3D 94.655 1665 48 19 566 2212 546705027 546706668 0.000000e+00 2543.0
12 TraesCS3A01G441300 chr3D 93.000 300 13 1 3 294 546704568 546704867 5.910000e-117 431.0
13 TraesCS3A01G441300 chr3D 84.416 231 16 7 2771 2982 417156457 417156686 3.010000e-50 209.0
14 TraesCS3A01G441300 chr3D 91.558 154 8 4 2770 2919 93254357 93254509 1.080000e-49 207.0
15 TraesCS3A01G441300 chr3D 90.385 156 10 4 2770 2921 563148119 563147965 1.810000e-47 200.0
16 TraesCS3A01G441300 chr5D 86.580 231 14 8 2768 2982 348516970 348517199 3.840000e-59 239.0
17 TraesCS3A01G441300 chr5D 84.615 221 14 7 2780 2981 35562221 35562002 5.040000e-48 202.0
18 TraesCS3A01G441300 chr5D 89.116 147 14 2 420 566 59947824 59947680 6.570000e-42 182.0
19 TraesCS3A01G441300 chr1D 85.590 229 16 5 2770 2982 487618229 487618002 1.080000e-54 224.0
20 TraesCS3A01G441300 chr1D 91.250 160 8 5 2767 2921 246072806 246072964 2.330000e-51 213.0
21 TraesCS3A01G441300 chr7A 92.157 153 10 2 2770 2921 108442202 108442353 6.470000e-52 215.0
22 TraesCS3A01G441300 chr7A 94.667 75 4 0 345 419 708106441 708106515 1.880000e-22 117.0
23 TraesCS3A01G441300 chr2D 89.809 157 11 4 2768 2920 593800685 593800530 2.340000e-46 196.0
24 TraesCS3A01G441300 chr7D 89.796 147 13 2 418 564 525767985 525768129 1.410000e-43 187.0
25 TraesCS3A01G441300 chr7D 82.328 232 20 10 2770 2982 168292868 168293097 6.570000e-42 182.0
26 TraesCS3A01G441300 chr7D 81.897 232 22 6 2770 2982 465920735 465920505 8.490000e-41 178.0
27 TraesCS3A01G441300 chr6D 89.655 145 13 2 420 564 338408423 338408565 1.830000e-42 183.0
28 TraesCS3A01G441300 chr4D 89.655 145 13 2 420 564 326382467 326382609 1.830000e-42 183.0
29 TraesCS3A01G441300 chr4D 87.273 55 5 2 286 339 459687922 459687869 8.930000e-06 62.1
30 TraesCS3A01G441300 chr4B 89.655 145 13 2 420 564 406390860 406391002 1.830000e-42 183.0
31 TraesCS3A01G441300 chr4B 89.655 145 13 2 420 564 406391070 406391212 1.830000e-42 183.0
32 TraesCS3A01G441300 chr4B 89.655 145 13 2 420 564 406391280 406391422 1.830000e-42 183.0
33 TraesCS3A01G441300 chr4B 93.333 75 5 0 345 419 3438562 3438636 8.740000e-21 111.0
34 TraesCS3A01G441300 chr4B 97.561 41 0 1 304 344 178645450 178645489 5.330000e-08 69.4
35 TraesCS3A01G441300 chr2B 89.655 145 13 2 420 564 727715093 727714951 1.830000e-42 183.0
36 TraesCS3A01G441300 chr2B 100.000 37 0 0 304 340 678956661 678956625 5.330000e-08 69.4
37 TraesCS3A01G441300 chr6A 82.251 231 21 9 2769 2981 545885402 545885630 6.570000e-42 182.0
38 TraesCS3A01G441300 chr6A 93.333 75 5 0 345 419 26481709 26481783 8.740000e-21 111.0
39 TraesCS3A01G441300 chr6A 100.000 34 0 0 307 340 134548543 134548576 2.480000e-06 63.9
40 TraesCS3A01G441300 chr5A 89.116 147 14 2 420 566 48469183 48469039 6.570000e-42 182.0
41 TraesCS3A01G441300 chr5A 80.357 224 33 9 2768 2982 680553687 680553466 3.080000e-35 159.0
42 TraesCS3A01G441300 chr5A 95.000 40 0 2 300 339 705067992 705068029 8.930000e-06 62.1
43 TraesCS3A01G441300 chr6B 81.974 233 21 11 2770 2982 671720396 671720165 8.490000e-41 178.0
44 TraesCS3A01G441300 chr7B 79.237 236 26 11 2769 2982 749395783 749395549 3.100000e-30 143.0
45 TraesCS3A01G441300 chr7B 93.333 75 5 0 345 419 389308546 389308620 8.740000e-21 111.0
46 TraesCS3A01G441300 chr2A 97.333 75 2 0 345 419 355453594 355453668 8.680000e-26 128.0
47 TraesCS3A01G441300 chrUn 93.333 75 5 0 345 419 48038050 48037976 8.740000e-21 111.0
48 TraesCS3A01G441300 chr1A 93.333 75 5 0 345 419 545520971 545521045 8.740000e-21 111.0
49 TraesCS3A01G441300 chr1A 87.755 49 5 1 283 331 98660772 98660819 4.150000e-04 56.5
50 TraesCS3A01G441300 chr5B 100.000 35 0 0 304 338 71715624 71715658 6.900000e-07 65.8
51 TraesCS3A01G441300 chr4A 97.297 37 1 0 304 340 556761603 556761639 2.480000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G441300 chr3A 683441450 683444431 2981 False 2392.0 4385 100.0000 1 2982 2 chr3A.!!$F1 2981
1 TraesCS3A01G441300 chr3B 723795338 723797456 2118 False 1660.5 2870 94.0285 1 2368 2 chr3B.!!$F5 2367
2 TraesCS3A01G441300 chr3D 546704568 546706668 2100 False 1487.0 2543 93.8275 3 2212 2 chr3D.!!$F3 2209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 511 0.0293 CCTCCGGTTTATGCAATGCG 59.971 55.0 0.0 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 2418 0.394565 GCCTGAGCGATTACCTGGAT 59.605 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 160 6.413892 TGTGAACAACTGATCCATATAAGCA 58.586 36.000 0.00 0.00 0.00 3.91
152 162 7.148255 TGTGAACAACTGATCCATATAAGCAAC 60.148 37.037 0.00 0.00 0.00 4.17
268 286 1.303309 GTGAGTGCTGTGTTCTGCTT 58.697 50.000 0.00 0.00 38.91 3.91
288 306 9.017509 TCTGCTTTCAAAATTATGACAGAAGAT 57.982 29.630 0.00 0.00 37.04 2.40
320 478 4.819105 TTATTGCCATATACTCCCTCCG 57.181 45.455 0.00 0.00 0.00 4.63
321 479 2.097110 TTGCCATATACTCCCTCCGT 57.903 50.000 0.00 0.00 0.00 4.69
322 480 2.097110 TGCCATATACTCCCTCCGTT 57.903 50.000 0.00 0.00 0.00 4.44
323 481 1.968493 TGCCATATACTCCCTCCGTTC 59.032 52.381 0.00 0.00 0.00 3.95
324 482 1.275573 GCCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
325 483 2.890814 CCATATACTCCCTCCGTTCCT 58.109 52.381 0.00 0.00 0.00 3.36
326 484 3.816842 GCCATATACTCCCTCCGTTCCTA 60.817 52.174 0.00 0.00 0.00 2.94
327 485 4.413760 CCATATACTCCCTCCGTTCCTAA 58.586 47.826 0.00 0.00 0.00 2.69
328 486 4.836736 CCATATACTCCCTCCGTTCCTAAA 59.163 45.833 0.00 0.00 0.00 1.85
329 487 5.484290 CCATATACTCCCTCCGTTCCTAAAT 59.516 44.000 0.00 0.00 0.00 1.40
330 488 6.666546 CCATATACTCCCTCCGTTCCTAAATA 59.333 42.308 0.00 0.00 0.00 1.40
331 489 7.363617 CCATATACTCCCTCCGTTCCTAAATAC 60.364 44.444 0.00 0.00 0.00 1.89
332 490 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
333 491 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
334 492 3.303049 TCCCTCCGTTCCTAAATACTCC 58.697 50.000 0.00 0.00 0.00 3.85
335 493 2.367894 CCCTCCGTTCCTAAATACTCCC 59.632 54.545 0.00 0.00 0.00 4.30
336 494 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
337 495 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
338 496 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
339 497 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
340 498 2.035576 CGTTCCTAAATACTCCCTCCGG 59.964 54.545 0.00 0.00 0.00 5.14
341 499 3.036819 GTTCCTAAATACTCCCTCCGGT 58.963 50.000 0.00 0.00 0.00 5.28
342 500 3.409804 TCCTAAATACTCCCTCCGGTT 57.590 47.619 0.00 0.00 0.00 4.44
343 501 3.727948 TCCTAAATACTCCCTCCGGTTT 58.272 45.455 0.00 0.00 0.00 3.27
344 502 4.882559 TCCTAAATACTCCCTCCGGTTTA 58.117 43.478 0.00 0.00 0.00 2.01
345 503 5.470501 TCCTAAATACTCCCTCCGGTTTAT 58.529 41.667 0.00 0.00 0.00 1.40
346 504 5.306160 TCCTAAATACTCCCTCCGGTTTATG 59.694 44.000 0.00 0.00 0.00 1.90
347 505 3.487120 AATACTCCCTCCGGTTTATGC 57.513 47.619 0.00 0.00 0.00 3.14
348 506 1.868713 TACTCCCTCCGGTTTATGCA 58.131 50.000 0.00 0.00 0.00 3.96
349 507 0.988832 ACTCCCTCCGGTTTATGCAA 59.011 50.000 0.00 0.00 0.00 4.08
350 508 1.564348 ACTCCCTCCGGTTTATGCAAT 59.436 47.619 0.00 0.00 0.00 3.56
351 509 1.949525 CTCCCTCCGGTTTATGCAATG 59.050 52.381 0.00 0.00 0.00 2.82
352 510 0.385390 CCCTCCGGTTTATGCAATGC 59.615 55.000 0.00 0.00 0.00 3.56
353 511 0.029300 CCTCCGGTTTATGCAATGCG 59.971 55.000 0.00 0.00 0.00 4.73
354 512 0.592247 CTCCGGTTTATGCAATGCGC 60.592 55.000 0.00 0.00 42.89 6.09
355 513 1.588667 CCGGTTTATGCAATGCGCC 60.589 57.895 4.18 0.00 41.33 6.53
356 514 1.588667 CGGTTTATGCAATGCGCCC 60.589 57.895 4.18 0.00 41.33 6.13
357 515 1.815866 GGTTTATGCAATGCGCCCT 59.184 52.632 4.18 0.00 41.33 5.19
358 516 1.028905 GGTTTATGCAATGCGCCCTA 58.971 50.000 4.18 0.00 41.33 3.53
359 517 1.407258 GGTTTATGCAATGCGCCCTAA 59.593 47.619 4.18 0.00 41.33 2.69
360 518 2.159170 GGTTTATGCAATGCGCCCTAAA 60.159 45.455 4.18 0.00 41.33 1.85
361 519 3.492482 GGTTTATGCAATGCGCCCTAAAT 60.492 43.478 4.18 0.00 41.33 1.40
362 520 3.641437 TTATGCAATGCGCCCTAAATC 57.359 42.857 4.18 0.00 41.33 2.17
363 521 1.696063 ATGCAATGCGCCCTAAATCT 58.304 45.000 4.18 0.00 41.33 2.40
364 522 1.473258 TGCAATGCGCCCTAAATCTT 58.527 45.000 4.18 0.00 41.33 2.40
365 523 1.134753 TGCAATGCGCCCTAAATCTTG 59.865 47.619 4.18 0.00 41.33 3.02
366 524 1.134946 GCAATGCGCCCTAAATCTTGT 59.865 47.619 4.18 0.00 32.94 3.16
367 525 2.796032 GCAATGCGCCCTAAATCTTGTC 60.796 50.000 4.18 0.00 32.94 3.18
368 526 2.684881 CAATGCGCCCTAAATCTTGTCT 59.315 45.455 4.18 0.00 0.00 3.41
369 527 3.838244 ATGCGCCCTAAATCTTGTCTA 57.162 42.857 4.18 0.00 0.00 2.59
370 528 3.838244 TGCGCCCTAAATCTTGTCTAT 57.162 42.857 4.18 0.00 0.00 1.98
371 529 4.150897 TGCGCCCTAAATCTTGTCTATT 57.849 40.909 4.18 0.00 0.00 1.73
372 530 5.284861 TGCGCCCTAAATCTTGTCTATTA 57.715 39.130 4.18 0.00 0.00 0.98
373 531 5.865085 TGCGCCCTAAATCTTGTCTATTAT 58.135 37.500 4.18 0.00 0.00 1.28
374 532 5.700832 TGCGCCCTAAATCTTGTCTATTATG 59.299 40.000 4.18 0.00 0.00 1.90
375 533 5.122396 GCGCCCTAAATCTTGTCTATTATGG 59.878 44.000 0.00 0.00 0.00 2.74
376 534 6.464222 CGCCCTAAATCTTGTCTATTATGGA 58.536 40.000 0.00 0.00 0.00 3.41
377 535 6.934645 CGCCCTAAATCTTGTCTATTATGGAA 59.065 38.462 0.00 0.00 0.00 3.53
378 536 7.444183 CGCCCTAAATCTTGTCTATTATGGAAA 59.556 37.037 0.00 0.00 0.00 3.13
379 537 8.568794 GCCCTAAATCTTGTCTATTATGGAAAC 58.431 37.037 0.00 0.00 0.00 2.78
397 555 7.086230 TGGAAACACACGTAAATTTAACTGT 57.914 32.000 0.00 1.68 33.40 3.55
398 556 6.967767 TGGAAACACACGTAAATTTAACTGTG 59.032 34.615 23.08 23.08 34.74 3.66
399 557 6.968335 GGAAACACACGTAAATTTAACTGTGT 59.032 34.615 23.95 23.95 40.87 3.72
400 558 7.164662 GGAAACACACGTAAATTTAACTGTGTC 59.835 37.037 26.91 20.03 38.40 3.67
401 559 6.913873 ACACACGTAAATTTAACTGTGTCT 57.086 33.333 23.95 14.27 38.40 3.41
402 560 7.311364 ACACACGTAAATTTAACTGTGTCTT 57.689 32.000 23.95 14.61 38.40 3.01
403 561 7.404203 ACACACGTAAATTTAACTGTGTCTTC 58.596 34.615 23.95 2.26 38.40 2.87
404 562 7.279313 ACACACGTAAATTTAACTGTGTCTTCT 59.721 33.333 23.95 10.85 38.40 2.85
405 563 8.757789 CACACGTAAATTTAACTGTGTCTTCTA 58.242 33.333 20.57 0.00 38.40 2.10
406 564 9.316730 ACACGTAAATTTAACTGTGTCTTCTAA 57.683 29.630 18.89 0.00 35.84 2.10
413 571 8.958119 ATTTAACTGTGTCTTCTAAACTGTGA 57.042 30.769 0.00 0.00 0.00 3.58
414 572 8.958119 TTTAACTGTGTCTTCTAAACTGTGAT 57.042 30.769 0.00 0.00 0.00 3.06
415 573 6.851222 AACTGTGTCTTCTAAACTGTGATG 57.149 37.500 0.00 0.00 0.00 3.07
416 574 5.300752 ACTGTGTCTTCTAAACTGTGATGG 58.699 41.667 0.00 0.00 0.00 3.51
417 575 5.070446 ACTGTGTCTTCTAAACTGTGATGGA 59.930 40.000 0.00 0.00 0.00 3.41
418 576 5.541845 TGTGTCTTCTAAACTGTGATGGAG 58.458 41.667 0.00 0.00 0.00 3.86
419 577 5.070446 TGTGTCTTCTAAACTGTGATGGAGT 59.930 40.000 0.00 0.00 0.00 3.85
420 578 6.266786 TGTGTCTTCTAAACTGTGATGGAGTA 59.733 38.462 0.00 0.00 0.00 2.59
421 579 7.039011 TGTGTCTTCTAAACTGTGATGGAGTAT 60.039 37.037 0.00 0.00 0.00 2.12
422 580 8.467598 GTGTCTTCTAAACTGTGATGGAGTATA 58.532 37.037 0.00 0.00 0.00 1.47
423 581 9.031537 TGTCTTCTAAACTGTGATGGAGTATAA 57.968 33.333 0.00 0.00 0.00 0.98
424 582 9.522804 GTCTTCTAAACTGTGATGGAGTATAAG 57.477 37.037 0.00 0.00 0.00 1.73
425 583 9.256228 TCTTCTAAACTGTGATGGAGTATAAGT 57.744 33.333 0.00 0.00 0.00 2.24
426 584 9.877178 CTTCTAAACTGTGATGGAGTATAAGTT 57.123 33.333 0.00 0.00 0.00 2.66
431 589 9.574516 AAACTGTGATGGAGTATAAGTTTTTCT 57.425 29.630 0.00 0.00 33.78 2.52
433 591 9.877178 ACTGTGATGGAGTATAAGTTTTTCTAG 57.123 33.333 0.00 0.00 0.00 2.43
449 607 9.660180 AGTTTTTCTAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 0.00 4.02
450 608 9.660180 GTTTTTCTAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 0.00 3.85
453 611 9.475620 TTTCTAGAGATTTCACTATGGACTACA 57.524 33.333 0.00 0.00 0.00 2.74
454 612 9.647918 TTCTAGAGATTTCACTATGGACTACAT 57.352 33.333 0.00 0.00 43.68 2.29
457 615 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
458 616 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
459 617 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
460 618 6.971726 TTTCACTATGGACTACATACGGAT 57.028 37.500 0.00 0.00 41.03 4.18
461 619 5.959618 TCACTATGGACTACATACGGATG 57.040 43.478 5.94 5.94 41.03 3.51
463 621 5.240844 TCACTATGGACTACATACGGATGTG 59.759 44.000 23.85 14.95 46.11 3.21
464 622 5.009710 CACTATGGACTACATACGGATGTGT 59.990 44.000 23.85 17.96 46.11 3.72
465 623 6.206048 CACTATGGACTACATACGGATGTGTA 59.794 42.308 23.85 3.01 46.11 2.90
466 624 6.946583 ACTATGGACTACATACGGATGTGTAT 59.053 38.462 23.85 8.22 46.11 2.29
467 625 8.105197 ACTATGGACTACATACGGATGTGTATA 58.895 37.037 23.85 12.50 46.11 1.47
468 626 6.564709 TGGACTACATACGGATGTGTATAC 57.435 41.667 23.85 9.54 46.11 1.47
469 627 6.063404 TGGACTACATACGGATGTGTATACA 58.937 40.000 23.85 12.06 46.11 2.29
470 628 6.016860 TGGACTACATACGGATGTGTATACAC 60.017 42.308 25.99 25.99 46.11 2.90
491 649 7.444629 ACACGTAGTTTAGAGTGTAGATTCA 57.555 36.000 0.00 0.00 44.79 2.57
492 650 7.303998 ACACGTAGTTTAGAGTGTAGATTCAC 58.696 38.462 0.00 0.00 44.79 3.18
493 651 7.174599 ACACGTAGTTTAGAGTGTAGATTCACT 59.825 37.037 0.00 0.00 45.77 3.41
503 661 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
504 662 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
505 663 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
506 664 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
507 665 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
508 666 6.734104 AGATTCACTCATTTTGCTCTGTAC 57.266 37.500 0.00 0.00 0.00 2.90
509 667 4.990543 TTCACTCATTTTGCTCTGTACG 57.009 40.909 0.00 0.00 0.00 3.67
510 668 3.990092 TCACTCATTTTGCTCTGTACGT 58.010 40.909 0.00 0.00 0.00 3.57
511 669 5.128992 TCACTCATTTTGCTCTGTACGTA 57.871 39.130 0.00 0.00 0.00 3.57
512 670 5.720202 TCACTCATTTTGCTCTGTACGTAT 58.280 37.500 0.00 0.00 0.00 3.06
513 671 6.163476 TCACTCATTTTGCTCTGTACGTATT 58.837 36.000 0.00 0.00 0.00 1.89
514 672 6.310467 TCACTCATTTTGCTCTGTACGTATTC 59.690 38.462 0.00 0.00 0.00 1.75
515 673 5.581085 ACTCATTTTGCTCTGTACGTATTCC 59.419 40.000 0.00 0.00 0.00 3.01
516 674 5.483811 TCATTTTGCTCTGTACGTATTCCA 58.516 37.500 0.00 0.00 0.00 3.53
517 675 6.112734 TCATTTTGCTCTGTACGTATTCCAT 58.887 36.000 0.00 0.00 0.00 3.41
518 676 7.269316 TCATTTTGCTCTGTACGTATTCCATA 58.731 34.615 0.00 0.00 0.00 2.74
519 677 7.931407 TCATTTTGCTCTGTACGTATTCCATAT 59.069 33.333 0.00 0.00 0.00 1.78
520 678 8.559536 CATTTTGCTCTGTACGTATTCCATATT 58.440 33.333 0.00 0.00 0.00 1.28
521 679 7.477144 TTTGCTCTGTACGTATTCCATATTG 57.523 36.000 0.00 0.00 0.00 1.90
522 680 4.988540 TGCTCTGTACGTATTCCATATTGC 59.011 41.667 0.00 0.00 0.00 3.56
523 681 4.988540 GCTCTGTACGTATTCCATATTGCA 59.011 41.667 0.00 0.00 0.00 4.08
524 682 5.465390 GCTCTGTACGTATTCCATATTGCAA 59.535 40.000 0.00 0.00 0.00 4.08
525 683 6.147821 GCTCTGTACGTATTCCATATTGCAAT 59.852 38.462 17.56 17.56 0.00 3.56
526 684 7.420184 TCTGTACGTATTCCATATTGCAATG 57.580 36.000 22.27 7.66 0.00 2.82
527 685 6.989759 TCTGTACGTATTCCATATTGCAATGT 59.010 34.615 22.27 12.90 0.00 2.71
528 686 7.170828 TCTGTACGTATTCCATATTGCAATGTC 59.829 37.037 22.27 1.43 0.00 3.06
529 687 6.763610 TGTACGTATTCCATATTGCAATGTCA 59.236 34.615 22.27 2.13 0.00 3.58
530 688 6.691754 ACGTATTCCATATTGCAATGTCAA 57.308 33.333 22.27 10.37 0.00 3.18
531 689 7.094508 ACGTATTCCATATTGCAATGTCAAA 57.905 32.000 22.27 11.45 0.00 2.69
532 690 7.542890 ACGTATTCCATATTGCAATGTCAAAA 58.457 30.769 22.27 9.11 0.00 2.44
533 691 8.031864 ACGTATTCCATATTGCAATGTCAAAAA 58.968 29.630 22.27 8.83 0.00 1.94
534 692 8.533965 CGTATTCCATATTGCAATGTCAAAAAG 58.466 33.333 22.27 2.27 0.00 2.27
535 693 7.852971 ATTCCATATTGCAATGTCAAAAAGG 57.147 32.000 22.27 11.33 0.00 3.11
536 694 6.602410 TCCATATTGCAATGTCAAAAAGGA 57.398 33.333 22.27 13.39 0.00 3.36
537 695 6.397272 TCCATATTGCAATGTCAAAAAGGAC 58.603 36.000 22.27 0.00 38.29 3.85
538 696 6.211184 TCCATATTGCAATGTCAAAAAGGACT 59.789 34.615 22.27 0.00 38.61 3.85
539 697 6.875195 CCATATTGCAATGTCAAAAAGGACTT 59.125 34.615 22.27 0.00 38.61 3.01
540 698 8.034215 CCATATTGCAATGTCAAAAAGGACTTA 58.966 33.333 22.27 0.00 38.61 2.24
541 699 9.590451 CATATTGCAATGTCAAAAAGGACTTAT 57.410 29.630 22.27 0.00 38.61 1.73
545 703 9.995003 TTGCAATGTCAAAAAGGACTTATTATT 57.005 25.926 0.00 0.00 38.61 1.40
546 704 9.995003 TGCAATGTCAAAAAGGACTTATTATTT 57.005 25.926 0.00 0.00 38.61 1.40
556 714 9.603921 AAAAGGACTTATTATTTACGAATCGGA 57.396 29.630 7.80 0.00 0.00 4.55
557 715 8.813643 AAGGACTTATTATTTACGAATCGGAG 57.186 34.615 7.80 0.00 0.00 4.63
558 716 7.376615 AGGACTTATTATTTACGAATCGGAGG 58.623 38.462 7.80 0.00 0.00 4.30
559 717 6.589139 GGACTTATTATTTACGAATCGGAGGG 59.411 42.308 7.80 0.00 0.00 4.30
560 718 7.294017 ACTTATTATTTACGAATCGGAGGGA 57.706 36.000 7.80 0.00 0.00 4.20
561 719 7.376615 ACTTATTATTTACGAATCGGAGGGAG 58.623 38.462 7.80 0.00 0.00 4.30
562 720 5.803237 ATTATTTACGAATCGGAGGGAGT 57.197 39.130 7.80 0.00 0.00 3.85
563 721 6.906157 ATTATTTACGAATCGGAGGGAGTA 57.094 37.500 7.80 0.00 0.00 2.59
564 722 6.713762 TTATTTACGAATCGGAGGGAGTAA 57.286 37.500 7.80 0.00 0.00 2.24
565 723 5.803237 ATTTACGAATCGGAGGGAGTAAT 57.197 39.130 7.80 0.00 0.00 1.89
566 724 5.603170 TTTACGAATCGGAGGGAGTAATT 57.397 39.130 7.80 0.00 0.00 1.40
567 725 5.603170 TTACGAATCGGAGGGAGTAATTT 57.397 39.130 7.80 0.00 0.00 1.82
568 726 4.056092 ACGAATCGGAGGGAGTAATTTC 57.944 45.455 7.80 0.00 0.00 2.17
569 727 3.705072 ACGAATCGGAGGGAGTAATTTCT 59.295 43.478 7.80 0.00 0.00 2.52
570 728 4.891756 ACGAATCGGAGGGAGTAATTTCTA 59.108 41.667 7.80 0.00 0.00 2.10
571 729 5.221130 CGAATCGGAGGGAGTAATTTCTAC 58.779 45.833 0.00 0.00 0.00 2.59
572 730 5.009811 CGAATCGGAGGGAGTAATTTCTACT 59.990 44.000 0.00 0.00 0.00 2.57
626 784 2.046988 TCTGTGGCTGTGGATGCG 60.047 61.111 0.00 0.00 0.00 4.73
634 792 2.221169 GGCTGTGGATGCGAATTGATA 58.779 47.619 0.00 0.00 0.00 2.15
635 793 2.225019 GGCTGTGGATGCGAATTGATAG 59.775 50.000 0.00 0.00 0.00 2.08
647 805 3.187227 CGAATTGATAGTGCTGCCATACC 59.813 47.826 0.00 0.00 0.00 2.73
648 806 2.638480 TTGATAGTGCTGCCATACCC 57.362 50.000 0.00 0.00 0.00 3.69
649 807 1.506025 TGATAGTGCTGCCATACCCA 58.494 50.000 0.00 0.00 0.00 4.51
650 808 2.057140 TGATAGTGCTGCCATACCCAT 58.943 47.619 0.00 0.00 0.00 4.00
651 809 3.247162 TGATAGTGCTGCCATACCCATA 58.753 45.455 0.00 0.00 0.00 2.74
652 810 3.007940 TGATAGTGCTGCCATACCCATAC 59.992 47.826 0.00 0.00 0.00 2.39
670 828 5.220662 CCCATACTGCTGTCGAACAAATTAG 60.221 44.000 0.00 0.00 0.00 1.73
677 835 3.581755 TGTCGAACAAATTAGTCCTCGG 58.418 45.455 0.00 0.00 0.00 4.63
697 855 6.426980 TCGGCAAATTCATATATCAGCATC 57.573 37.500 0.00 0.00 0.00 3.91
703 861 8.795341 GCAAATTCATATATCAGCATCGATTTG 58.205 33.333 0.00 0.00 0.00 2.32
784 942 1.259609 TTCCTGCTGATTTTGGGCTG 58.740 50.000 0.00 0.00 0.00 4.85
892 1053 1.620323 AGTTCTTGCCAATTTCTGCCC 59.380 47.619 0.00 0.00 0.00 5.36
939 1100 1.336125 GCAGTGCATAAATCTCAGCCC 59.664 52.381 11.09 0.00 0.00 5.19
980 1141 2.503061 CGTGCCCATCCTCTCCTG 59.497 66.667 0.00 0.00 0.00 3.86
981 1142 2.060383 CGTGCCCATCCTCTCCTGA 61.060 63.158 0.00 0.00 0.00 3.86
988 1151 1.000731 CCATCCTCTCCTGATTCGAGC 59.999 57.143 0.00 0.00 0.00 5.03
990 1153 0.260230 TCCTCTCCTGATTCGAGCCT 59.740 55.000 0.00 0.00 0.00 4.58
991 1154 1.495148 TCCTCTCCTGATTCGAGCCTA 59.505 52.381 0.00 0.00 0.00 3.93
994 1157 2.295909 CTCTCCTGATTCGAGCCTAAGG 59.704 54.545 0.00 0.00 0.00 2.69
1276 1439 2.815647 GGGAGAAGAAGCACGCCG 60.816 66.667 0.00 0.00 0.00 6.46
1278 1441 3.491652 GAGAAGAAGCACGCCGCC 61.492 66.667 0.00 0.00 44.04 6.13
1531 1694 1.215173 TCATGCCCATCCAAGGTAAGG 59.785 52.381 0.00 0.00 0.00 2.69
1553 1721 1.343821 GCCACTACATTCGAACGCG 59.656 57.895 3.53 3.53 39.35 6.01
1653 1827 3.465403 CTCCTCCCAGTCCCAGCG 61.465 72.222 0.00 0.00 0.00 5.18
1897 2071 2.581354 CAGAGGGCGAACTGGGAG 59.419 66.667 0.00 0.00 0.00 4.30
2011 2185 1.267882 CGGATGAATTCTCGTCGTCGA 60.268 52.381 7.05 4.42 44.12 4.20
2041 2215 5.427378 TCGATAGCAGAGATAGGAGATGAG 58.573 45.833 0.00 0.00 0.00 2.90
2169 2343 2.794103 TGTTCCTGATGTGAATGGTGG 58.206 47.619 0.00 0.00 0.00 4.61
2188 2362 3.755378 GTGGATTGGCCTGATATGATGAC 59.245 47.826 3.32 0.00 37.63 3.06
2222 2396 8.792633 TGTTTGTTGTCTAGATTAATTCCTTGG 58.207 33.333 0.00 0.00 0.00 3.61
2237 2411 5.677319 TTCCTTGGAGGATGTACAACTAG 57.323 43.478 0.00 0.00 45.34 2.57
2244 2418 4.654262 GGAGGATGTACAACTAGGAATCCA 59.346 45.833 0.61 0.00 36.79 3.41
2259 2433 3.330267 GAATCCATCCAGGTAATCGCTC 58.670 50.000 0.00 0.00 39.02 5.03
2260 2434 1.788229 TCCATCCAGGTAATCGCTCA 58.212 50.000 0.00 0.00 39.02 4.26
2261 2435 1.688735 TCCATCCAGGTAATCGCTCAG 59.311 52.381 0.00 0.00 39.02 3.35
2358 2532 8.786898 TCAATTTTCTCTATTTGTGTTGAGAGG 58.213 33.333 0.00 0.00 36.98 3.69
2821 2995 9.733556 TTGATCATAACAATTACAGGTAACACT 57.266 29.630 0.00 0.00 41.41 3.55
2822 2996 9.161629 TGATCATAACAATTACAGGTAACACTG 57.838 33.333 0.00 0.00 44.03 3.66
2823 2997 9.378551 GATCATAACAATTACAGGTAACACTGA 57.621 33.333 0.00 0.00 40.97 3.41
2824 2998 9.905713 ATCATAACAATTACAGGTAACACTGAT 57.094 29.630 0.00 0.00 40.97 2.90
2825 2999 9.733556 TCATAACAATTACAGGTAACACTGATT 57.266 29.630 0.00 0.00 40.97 2.57
2829 3003 8.458573 ACAATTACAGGTAACACTGATTTTGA 57.541 30.769 0.00 0.00 40.97 2.69
2830 3004 8.349983 ACAATTACAGGTAACACTGATTTTGAC 58.650 33.333 0.00 0.00 40.97 3.18
2831 3005 6.870971 TTACAGGTAACACTGATTTTGACC 57.129 37.500 0.00 0.00 40.97 4.02
2832 3006 5.048846 ACAGGTAACACTGATTTTGACCT 57.951 39.130 0.00 0.00 40.97 3.85
2833 3007 6.182507 ACAGGTAACACTGATTTTGACCTA 57.817 37.500 0.00 0.00 40.97 3.08
2834 3008 6.597562 ACAGGTAACACTGATTTTGACCTAA 58.402 36.000 0.00 0.00 40.97 2.69
2835 3009 6.710744 ACAGGTAACACTGATTTTGACCTAAG 59.289 38.462 0.00 0.00 40.97 2.18
2836 3010 6.934645 CAGGTAACACTGATTTTGACCTAAGA 59.065 38.462 0.00 0.00 40.97 2.10
2837 3011 7.607991 CAGGTAACACTGATTTTGACCTAAGAT 59.392 37.037 0.00 0.00 40.97 2.40
2838 3012 7.824779 AGGTAACACTGATTTTGACCTAAGATC 59.175 37.037 0.00 0.00 34.08 2.75
2839 3013 7.065923 GGTAACACTGATTTTGACCTAAGATCC 59.934 40.741 0.00 0.00 30.80 3.36
2840 3014 6.126863 ACACTGATTTTGACCTAAGATCCA 57.873 37.500 0.00 0.00 30.80 3.41
2841 3015 6.542821 ACACTGATTTTGACCTAAGATCCAA 58.457 36.000 0.00 0.00 30.80 3.53
2842 3016 6.656693 ACACTGATTTTGACCTAAGATCCAAG 59.343 38.462 0.00 0.00 30.80 3.61
2843 3017 6.881065 CACTGATTTTGACCTAAGATCCAAGA 59.119 38.462 0.00 0.00 30.80 3.02
2844 3018 7.391554 CACTGATTTTGACCTAAGATCCAAGAA 59.608 37.037 0.00 0.00 30.80 2.52
2845 3019 7.944554 ACTGATTTTGACCTAAGATCCAAGAAA 59.055 33.333 0.00 0.00 30.80 2.52
2846 3020 8.704849 TGATTTTGACCTAAGATCCAAGAAAA 57.295 30.769 0.00 0.00 30.80 2.29
2847 3021 9.312904 TGATTTTGACCTAAGATCCAAGAAAAT 57.687 29.630 0.00 0.00 30.80 1.82
2853 3027 9.672673 TGACCTAAGATCCAAGAAAATAGAAAG 57.327 33.333 0.00 0.00 0.00 2.62
2854 3028 9.674068 GACCTAAGATCCAAGAAAATAGAAAGT 57.326 33.333 0.00 0.00 0.00 2.66
2860 3034 9.674068 AGATCCAAGAAAATAGAAAGTAACTCC 57.326 33.333 0.00 0.00 0.00 3.85
2861 3035 9.674068 GATCCAAGAAAATAGAAAGTAACTCCT 57.326 33.333 0.00 0.00 0.00 3.69
2898 3072 8.918202 TTACAATGAAATCTCTTGTAACACCT 57.082 30.769 13.21 0.00 39.28 4.00
2899 3073 7.823745 ACAATGAAATCTCTTGTAACACCTT 57.176 32.000 0.00 0.00 31.62 3.50
2900 3074 7.875971 ACAATGAAATCTCTTGTAACACCTTC 58.124 34.615 0.00 0.00 31.62 3.46
2901 3075 7.721399 ACAATGAAATCTCTTGTAACACCTTCT 59.279 33.333 0.00 0.00 31.62 2.85
2902 3076 8.571336 CAATGAAATCTCTTGTAACACCTTCTT 58.429 33.333 0.00 0.00 0.00 2.52
2903 3077 7.730364 TGAAATCTCTTGTAACACCTTCTTC 57.270 36.000 0.00 0.00 0.00 2.87
2904 3078 6.423905 TGAAATCTCTTGTAACACCTTCTTCG 59.576 38.462 0.00 0.00 0.00 3.79
2905 3079 3.650139 TCTCTTGTAACACCTTCTTCGC 58.350 45.455 0.00 0.00 0.00 4.70
2906 3080 2.400399 TCTTGTAACACCTTCTTCGCG 58.600 47.619 0.00 0.00 0.00 5.87
2907 3081 1.459592 CTTGTAACACCTTCTTCGCGG 59.540 52.381 6.13 0.00 0.00 6.46
2908 3082 0.390124 TGTAACACCTTCTTCGCGGT 59.610 50.000 6.13 0.00 0.00 5.68
2909 3083 1.612950 TGTAACACCTTCTTCGCGGTA 59.387 47.619 6.13 0.00 30.91 4.02
2910 3084 2.035704 TGTAACACCTTCTTCGCGGTAA 59.964 45.455 6.13 0.00 30.91 2.85
2911 3085 1.505425 AACACCTTCTTCGCGGTAAC 58.495 50.000 6.13 0.00 30.91 2.50
2912 3086 0.390124 ACACCTTCTTCGCGGTAACA 59.610 50.000 6.13 0.00 30.91 2.41
2913 3087 1.202557 ACACCTTCTTCGCGGTAACAA 60.203 47.619 6.13 0.00 30.91 2.83
2914 3088 2.073816 CACCTTCTTCGCGGTAACAAT 58.926 47.619 6.13 0.00 30.91 2.71
2915 3089 2.093783 CACCTTCTTCGCGGTAACAATC 59.906 50.000 6.13 0.00 30.91 2.67
2916 3090 2.028385 ACCTTCTTCGCGGTAACAATCT 60.028 45.455 6.13 0.00 0.00 2.40
2917 3091 2.603560 CCTTCTTCGCGGTAACAATCTC 59.396 50.000 6.13 0.00 0.00 2.75
2918 3092 3.512680 CTTCTTCGCGGTAACAATCTCT 58.487 45.455 6.13 0.00 0.00 3.10
2919 3093 2.876091 TCTTCGCGGTAACAATCTCTG 58.124 47.619 6.13 0.00 0.00 3.35
2920 3094 1.324736 CTTCGCGGTAACAATCTCTGC 59.675 52.381 6.13 0.00 0.00 4.26
2921 3095 0.245266 TCGCGGTAACAATCTCTGCA 59.755 50.000 6.13 0.00 33.64 4.41
2922 3096 1.075542 CGCGGTAACAATCTCTGCAA 58.924 50.000 0.00 0.00 33.64 4.08
2923 3097 1.463056 CGCGGTAACAATCTCTGCAAA 59.537 47.619 0.00 0.00 33.64 3.68
2924 3098 2.474526 CGCGGTAACAATCTCTGCAAAG 60.475 50.000 0.00 0.00 33.64 2.77
2925 3099 2.742053 GCGGTAACAATCTCTGCAAAGA 59.258 45.455 0.00 0.00 34.13 2.52
2926 3100 3.424962 GCGGTAACAATCTCTGCAAAGAC 60.425 47.826 0.00 0.00 34.13 3.01
2927 3101 3.997021 CGGTAACAATCTCTGCAAAGACT 59.003 43.478 0.00 0.00 0.00 3.24
2928 3102 4.452455 CGGTAACAATCTCTGCAAAGACTT 59.548 41.667 0.00 0.00 0.00 3.01
2929 3103 5.389935 CGGTAACAATCTCTGCAAAGACTTC 60.390 44.000 0.00 0.00 0.00 3.01
2930 3104 4.739046 AACAATCTCTGCAAAGACTTCG 57.261 40.909 0.00 0.00 0.00 3.79
2931 3105 3.070018 ACAATCTCTGCAAAGACTTCGG 58.930 45.455 0.00 0.00 0.00 4.30
2932 3106 3.070018 CAATCTCTGCAAAGACTTCGGT 58.930 45.455 0.00 0.00 0.00 4.69
2933 3107 4.245660 CAATCTCTGCAAAGACTTCGGTA 58.754 43.478 0.00 0.00 0.00 4.02
2934 3108 4.537135 ATCTCTGCAAAGACTTCGGTAA 57.463 40.909 0.00 0.00 0.00 2.85
2935 3109 4.330944 TCTCTGCAAAGACTTCGGTAAA 57.669 40.909 0.00 0.00 0.00 2.01
2936 3110 4.307432 TCTCTGCAAAGACTTCGGTAAAG 58.693 43.478 0.00 0.00 41.08 1.85
2937 3111 4.038763 TCTCTGCAAAGACTTCGGTAAAGA 59.961 41.667 0.00 0.00 38.44 2.52
2938 3112 4.307432 TCTGCAAAGACTTCGGTAAAGAG 58.693 43.478 0.00 0.00 38.44 2.85
2939 3113 3.399330 TGCAAAGACTTCGGTAAAGAGG 58.601 45.455 0.00 0.00 38.44 3.69
2940 3114 2.159824 GCAAAGACTTCGGTAAAGAGGC 59.840 50.000 0.00 0.00 38.44 4.70
2941 3115 3.665190 CAAAGACTTCGGTAAAGAGGCT 58.335 45.455 0.00 0.00 38.44 4.58
2942 3116 3.320673 AAGACTTCGGTAAAGAGGCTG 57.679 47.619 0.00 0.00 38.44 4.85
2943 3117 1.066787 AGACTTCGGTAAAGAGGCTGC 60.067 52.381 0.00 0.00 38.44 5.25
2944 3118 0.685097 ACTTCGGTAAAGAGGCTGCA 59.315 50.000 0.50 0.00 38.44 4.41
2945 3119 1.071699 ACTTCGGTAAAGAGGCTGCAA 59.928 47.619 0.50 0.00 38.44 4.08
2946 3120 2.290323 ACTTCGGTAAAGAGGCTGCAAT 60.290 45.455 0.50 0.00 38.44 3.56
2947 3121 2.489938 TCGGTAAAGAGGCTGCAATT 57.510 45.000 0.50 0.00 0.00 2.32
2948 3122 3.620427 TCGGTAAAGAGGCTGCAATTA 57.380 42.857 0.50 0.00 0.00 1.40
2949 3123 3.531538 TCGGTAAAGAGGCTGCAATTAG 58.468 45.455 0.50 0.00 0.00 1.73
2950 3124 3.196901 TCGGTAAAGAGGCTGCAATTAGA 59.803 43.478 0.50 0.00 0.00 2.10
2951 3125 3.309954 CGGTAAAGAGGCTGCAATTAGAC 59.690 47.826 0.50 0.00 0.00 2.59
2952 3126 4.518249 GGTAAAGAGGCTGCAATTAGACT 58.482 43.478 0.50 0.00 39.24 3.24
2953 3127 4.333926 GGTAAAGAGGCTGCAATTAGACTG 59.666 45.833 0.50 0.00 35.77 3.51
2954 3128 2.706339 AGAGGCTGCAATTAGACTGG 57.294 50.000 0.50 0.00 35.77 4.00
2955 3129 2.191400 AGAGGCTGCAATTAGACTGGA 58.809 47.619 0.50 0.00 35.77 3.86
2956 3130 2.170187 AGAGGCTGCAATTAGACTGGAG 59.830 50.000 0.50 0.00 35.77 3.86
2960 3134 3.754188 CTGCAATTAGACTGGAGCAAC 57.246 47.619 0.00 0.00 0.00 4.17
2961 3135 2.076100 TGCAATTAGACTGGAGCAACG 58.924 47.619 0.00 0.00 0.00 4.10
2962 3136 2.289382 TGCAATTAGACTGGAGCAACGA 60.289 45.455 0.00 0.00 0.00 3.85
2963 3137 2.939103 GCAATTAGACTGGAGCAACGAT 59.061 45.455 0.00 0.00 0.00 3.73
2964 3138 3.242543 GCAATTAGACTGGAGCAACGATG 60.243 47.826 0.00 0.00 0.00 3.84
2965 3139 3.895232 ATTAGACTGGAGCAACGATGT 57.105 42.857 0.00 0.00 0.00 3.06
2966 3140 3.678056 TTAGACTGGAGCAACGATGTT 57.322 42.857 0.00 0.00 0.00 2.71
2967 3141 1.800805 AGACTGGAGCAACGATGTTG 58.199 50.000 5.34 5.34 0.00 3.33
2968 3142 1.070758 AGACTGGAGCAACGATGTTGT 59.929 47.619 10.96 0.00 0.00 3.32
2969 3143 1.873591 GACTGGAGCAACGATGTTGTT 59.126 47.619 10.96 5.20 0.00 2.83
2970 3144 3.064207 GACTGGAGCAACGATGTTGTTA 58.936 45.455 10.96 0.00 0.00 2.41
2971 3145 3.674997 ACTGGAGCAACGATGTTGTTAT 58.325 40.909 10.96 0.00 0.00 1.89
2972 3146 4.072131 ACTGGAGCAACGATGTTGTTATT 58.928 39.130 10.96 0.00 0.00 1.40
2973 3147 4.518970 ACTGGAGCAACGATGTTGTTATTT 59.481 37.500 10.96 0.00 0.00 1.40
2974 3148 5.009610 ACTGGAGCAACGATGTTGTTATTTT 59.990 36.000 10.96 0.00 0.00 1.82
2975 3149 5.837437 TGGAGCAACGATGTTGTTATTTTT 58.163 33.333 10.96 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.305720 TGTCACCACCTAGACAAACTCT 58.694 45.455 0.00 0.00 41.42 3.24
80 81 3.746045 TGTCACCACCTAGACAAACTC 57.254 47.619 0.00 0.00 41.42 3.01
111 112 7.009815 CAGTTGTTCACAAAATATCATGCCATC 59.990 37.037 0.00 0.00 37.63 3.51
150 160 4.482952 AAGATCGGTTAATCCTTCCGTT 57.517 40.909 0.00 0.00 43.94 4.44
152 162 4.873827 TCAAAAGATCGGTTAATCCTTCCG 59.126 41.667 0.00 0.00 44.76 4.30
312 470 3.321396 GGAGTATTTAGGAACGGAGGGAG 59.679 52.174 0.00 0.00 0.00 4.30
314 472 2.367894 GGGAGTATTTAGGAACGGAGGG 59.632 54.545 0.00 0.00 0.00 4.30
315 473 3.306613 AGGGAGTATTTAGGAACGGAGG 58.693 50.000 0.00 0.00 0.00 4.30
318 476 2.035576 CGGAGGGAGTATTTAGGAACGG 59.964 54.545 0.00 0.00 0.00 4.44
335 493 0.592247 GCGCATTGCATAAACCGGAG 60.592 55.000 9.46 0.00 45.45 4.63
336 494 1.431440 GCGCATTGCATAAACCGGA 59.569 52.632 9.46 0.00 45.45 5.14
337 495 3.996073 GCGCATTGCATAAACCGG 58.004 55.556 9.69 0.00 45.45 5.28
346 504 1.134946 ACAAGATTTAGGGCGCATTGC 59.865 47.619 10.83 0.00 45.38 3.56
347 505 2.684881 AGACAAGATTTAGGGCGCATTG 59.315 45.455 10.83 3.20 0.00 2.82
348 506 3.004752 AGACAAGATTTAGGGCGCATT 57.995 42.857 10.83 0.00 0.00 3.56
349 507 2.717639 AGACAAGATTTAGGGCGCAT 57.282 45.000 10.83 0.00 0.00 4.73
350 508 3.838244 ATAGACAAGATTTAGGGCGCA 57.162 42.857 10.83 0.00 0.00 6.09
351 509 5.122396 CCATAATAGACAAGATTTAGGGCGC 59.878 44.000 0.00 0.00 0.00 6.53
352 510 6.464222 TCCATAATAGACAAGATTTAGGGCG 58.536 40.000 0.00 0.00 0.00 6.13
353 511 8.568794 GTTTCCATAATAGACAAGATTTAGGGC 58.431 37.037 0.00 0.00 0.00 5.19
354 512 9.627123 TGTTTCCATAATAGACAAGATTTAGGG 57.373 33.333 0.00 0.00 0.00 3.53
358 516 8.450964 CGTGTGTTTCCATAATAGACAAGATTT 58.549 33.333 0.00 0.00 0.00 2.17
359 517 7.606456 ACGTGTGTTTCCATAATAGACAAGATT 59.394 33.333 0.00 0.00 0.00 2.40
360 518 7.103641 ACGTGTGTTTCCATAATAGACAAGAT 58.896 34.615 0.00 0.00 0.00 2.40
361 519 6.460781 ACGTGTGTTTCCATAATAGACAAGA 58.539 36.000 0.00 0.00 0.00 3.02
362 520 6.721571 ACGTGTGTTTCCATAATAGACAAG 57.278 37.500 0.00 0.00 0.00 3.16
363 521 8.604640 TTTACGTGTGTTTCCATAATAGACAA 57.395 30.769 0.00 0.00 0.00 3.18
364 522 8.780846 ATTTACGTGTGTTTCCATAATAGACA 57.219 30.769 0.00 0.00 0.00 3.41
370 528 9.666626 CAGTTAAATTTACGTGTGTTTCCATAA 57.333 29.630 0.00 0.00 0.00 1.90
371 529 8.838365 ACAGTTAAATTTACGTGTGTTTCCATA 58.162 29.630 0.00 0.00 0.00 2.74
372 530 7.646130 CACAGTTAAATTTACGTGTGTTTCCAT 59.354 33.333 21.11 0.00 32.44 3.41
373 531 6.967767 CACAGTTAAATTTACGTGTGTTTCCA 59.032 34.615 21.11 0.00 32.44 3.53
374 532 6.968335 ACACAGTTAAATTTACGTGTGTTTCC 59.032 34.615 25.57 0.00 44.61 3.13
375 533 7.906527 AGACACAGTTAAATTTACGTGTGTTTC 59.093 33.333 28.76 21.86 46.37 2.78
376 534 7.754625 AGACACAGTTAAATTTACGTGTGTTT 58.245 30.769 28.76 24.28 46.37 2.83
377 535 7.311364 AGACACAGTTAAATTTACGTGTGTT 57.689 32.000 28.76 20.87 46.37 3.32
379 537 7.627340 AGAAGACACAGTTAAATTTACGTGTG 58.373 34.615 24.69 24.69 40.87 3.82
380 538 7.781548 AGAAGACACAGTTAAATTTACGTGT 57.218 32.000 19.57 19.57 36.61 4.49
387 545 9.391006 TCACAGTTTAGAAGACACAGTTAAATT 57.609 29.630 0.00 0.00 0.00 1.82
388 546 8.958119 TCACAGTTTAGAAGACACAGTTAAAT 57.042 30.769 0.00 0.00 0.00 1.40
389 547 8.826710 CATCACAGTTTAGAAGACACAGTTAAA 58.173 33.333 0.00 0.00 0.00 1.52
390 548 7.441157 CCATCACAGTTTAGAAGACACAGTTAA 59.559 37.037 0.00 0.00 0.00 2.01
391 549 6.929049 CCATCACAGTTTAGAAGACACAGTTA 59.071 38.462 0.00 0.00 0.00 2.24
392 550 5.760253 CCATCACAGTTTAGAAGACACAGTT 59.240 40.000 0.00 0.00 0.00 3.16
393 551 5.070446 TCCATCACAGTTTAGAAGACACAGT 59.930 40.000 0.00 0.00 0.00 3.55
394 552 5.541845 TCCATCACAGTTTAGAAGACACAG 58.458 41.667 0.00 0.00 0.00 3.66
395 553 5.070446 ACTCCATCACAGTTTAGAAGACACA 59.930 40.000 0.00 0.00 0.00 3.72
396 554 5.542779 ACTCCATCACAGTTTAGAAGACAC 58.457 41.667 0.00 0.00 0.00 3.67
397 555 5.808366 ACTCCATCACAGTTTAGAAGACA 57.192 39.130 0.00 0.00 0.00 3.41
398 556 9.522804 CTTATACTCCATCACAGTTTAGAAGAC 57.477 37.037 0.00 0.00 0.00 3.01
399 557 9.256228 ACTTATACTCCATCACAGTTTAGAAGA 57.744 33.333 0.00 0.00 0.00 2.87
400 558 9.877178 AACTTATACTCCATCACAGTTTAGAAG 57.123 33.333 0.00 0.00 0.00 2.85
405 563 9.574516 AGAAAAACTTATACTCCATCACAGTTT 57.425 29.630 0.00 0.00 35.10 2.66
407 565 9.877178 CTAGAAAAACTTATACTCCATCACAGT 57.123 33.333 0.00 0.00 0.00 3.55
423 581 9.660180 GTCCATAGTGAAATCTCTAGAAAAACT 57.340 33.333 0.00 0.00 0.00 2.66
424 582 9.660180 AGTCCATAGTGAAATCTCTAGAAAAAC 57.340 33.333 0.00 0.00 0.00 2.43
427 585 9.475620 TGTAGTCCATAGTGAAATCTCTAGAAA 57.524 33.333 0.00 0.00 0.00 2.52
428 586 9.647918 ATGTAGTCCATAGTGAAATCTCTAGAA 57.352 33.333 0.00 0.00 29.82 2.10
431 589 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
432 590 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
433 591 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
434 592 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
435 593 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
436 594 6.971726 TCCGTATGTAGTCCATAGTGAAAT 57.028 37.500 0.00 0.00 36.71 2.17
437 595 6.322969 ACATCCGTATGTAGTCCATAGTGAAA 59.677 38.462 0.00 0.00 44.66 2.69
438 596 5.831525 ACATCCGTATGTAGTCCATAGTGAA 59.168 40.000 0.00 0.00 44.66 3.18
439 597 5.240844 CACATCCGTATGTAGTCCATAGTGA 59.759 44.000 0.00 0.00 44.70 3.41
440 598 5.009710 ACACATCCGTATGTAGTCCATAGTG 59.990 44.000 0.00 0.00 44.70 2.74
441 599 5.138276 ACACATCCGTATGTAGTCCATAGT 58.862 41.667 0.00 0.00 44.70 2.12
442 600 5.707242 ACACATCCGTATGTAGTCCATAG 57.293 43.478 0.00 0.00 44.70 2.23
443 601 7.884354 TGTATACACATCCGTATGTAGTCCATA 59.116 37.037 0.08 0.00 44.70 2.74
444 602 6.717997 TGTATACACATCCGTATGTAGTCCAT 59.282 38.462 0.08 0.00 44.70 3.41
445 603 6.016860 GTGTATACACATCCGTATGTAGTCCA 60.017 42.308 27.37 0.00 44.70 4.02
446 604 6.376978 GTGTATACACATCCGTATGTAGTCC 58.623 44.000 27.37 0.00 44.70 3.85
447 605 6.075918 CGTGTATACACATCCGTATGTAGTC 58.924 44.000 30.17 3.36 44.70 2.59
448 606 5.528690 ACGTGTATACACATCCGTATGTAGT 59.471 40.000 30.17 15.32 44.70 2.73
449 607 5.993891 ACGTGTATACACATCCGTATGTAG 58.006 41.667 30.17 14.77 44.70 2.74
450 608 6.705825 ACTACGTGTATACACATCCGTATGTA 59.294 38.462 30.17 20.39 44.70 2.29
452 610 5.993891 ACTACGTGTATACACATCCGTATG 58.006 41.667 30.17 20.68 46.75 2.39
453 611 6.624352 AACTACGTGTATACACATCCGTAT 57.376 37.500 30.17 13.17 46.75 3.06
454 612 6.435430 AAACTACGTGTATACACATCCGTA 57.565 37.500 30.17 24.22 46.75 4.02
455 613 4.970662 AACTACGTGTATACACATCCGT 57.029 40.909 30.17 24.38 46.75 4.69
456 614 6.718388 TCTAAACTACGTGTATACACATCCG 58.282 40.000 30.17 20.63 46.75 4.18
457 615 7.642978 CACTCTAAACTACGTGTATACACATCC 59.357 40.741 30.17 8.70 46.75 3.51
458 616 8.180267 ACACTCTAAACTACGTGTATACACATC 58.820 37.037 30.17 9.04 46.75 3.06
459 617 8.048534 ACACTCTAAACTACGTGTATACACAT 57.951 34.615 30.17 21.23 46.75 3.21
460 618 7.439157 ACACTCTAAACTACGTGTATACACA 57.561 36.000 30.17 14.71 46.75 3.72
461 619 8.873830 TCTACACTCTAAACTACGTGTATACAC 58.126 37.037 23.53 23.53 40.71 2.90
462 620 9.605275 ATCTACACTCTAAACTACGTGTATACA 57.395 33.333 0.08 0.08 40.71 2.29
465 623 9.170734 TGAATCTACACTCTAAACTACGTGTAT 57.829 33.333 0.00 0.00 40.71 2.29
466 624 8.446273 GTGAATCTACACTCTAAACTACGTGTA 58.554 37.037 0.00 0.00 40.66 2.90
467 625 7.174599 AGTGAATCTACACTCTAAACTACGTGT 59.825 37.037 0.00 0.00 46.36 4.49
468 626 7.528307 AGTGAATCTACACTCTAAACTACGTG 58.472 38.462 0.00 0.00 46.36 4.49
469 627 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
481 639 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
482 640 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
483 641 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
484 642 6.531594 CGTACAGAGCAAAATGAGTGAATCTA 59.468 38.462 0.00 0.00 0.00 1.98
485 643 5.349817 CGTACAGAGCAAAATGAGTGAATCT 59.650 40.000 0.00 0.00 0.00 2.40
486 644 5.120830 ACGTACAGAGCAAAATGAGTGAATC 59.879 40.000 0.00 0.00 0.00 2.52
487 645 4.997395 ACGTACAGAGCAAAATGAGTGAAT 59.003 37.500 0.00 0.00 0.00 2.57
488 646 4.377021 ACGTACAGAGCAAAATGAGTGAA 58.623 39.130 0.00 0.00 0.00 3.18
489 647 3.990092 ACGTACAGAGCAAAATGAGTGA 58.010 40.909 0.00 0.00 0.00 3.41
490 648 6.408858 AATACGTACAGAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
491 649 5.581085 GGAATACGTACAGAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
492 650 5.580691 TGGAATACGTACAGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
493 651 5.483811 TGGAATACGTACAGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
494 652 5.794687 TGGAATACGTACAGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
495 653 8.559536 CAATATGGAATACGTACAGAGCAAAAT 58.440 33.333 0.00 0.00 0.00 1.82
496 654 7.466725 GCAATATGGAATACGTACAGAGCAAAA 60.467 37.037 0.00 0.00 0.00 2.44
497 655 6.018262 GCAATATGGAATACGTACAGAGCAAA 60.018 38.462 0.00 0.00 0.00 3.68
498 656 5.465390 GCAATATGGAATACGTACAGAGCAA 59.535 40.000 0.00 0.00 0.00 3.91
499 657 4.988540 GCAATATGGAATACGTACAGAGCA 59.011 41.667 0.00 0.00 0.00 4.26
500 658 4.988540 TGCAATATGGAATACGTACAGAGC 59.011 41.667 0.00 0.00 0.00 4.09
501 659 7.171508 ACATTGCAATATGGAATACGTACAGAG 59.828 37.037 12.53 0.00 36.23 3.35
502 660 6.989759 ACATTGCAATATGGAATACGTACAGA 59.010 34.615 12.53 0.00 36.23 3.41
503 661 7.042119 TGACATTGCAATATGGAATACGTACAG 60.042 37.037 12.53 0.00 36.23 2.74
504 662 6.763610 TGACATTGCAATATGGAATACGTACA 59.236 34.615 12.53 0.00 36.23 2.90
505 663 7.184800 TGACATTGCAATATGGAATACGTAC 57.815 36.000 12.53 0.00 36.23 3.67
506 664 7.793927 TTGACATTGCAATATGGAATACGTA 57.206 32.000 12.53 0.00 36.23 3.57
507 665 6.691754 TTGACATTGCAATATGGAATACGT 57.308 33.333 12.53 2.08 36.23 3.57
508 666 7.984002 TTTTGACATTGCAATATGGAATACG 57.016 32.000 12.53 0.00 36.23 3.06
509 667 8.819974 CCTTTTTGACATTGCAATATGGAATAC 58.180 33.333 12.53 0.00 36.23 1.89
510 668 8.756927 TCCTTTTTGACATTGCAATATGGAATA 58.243 29.630 12.53 0.65 36.23 1.75
511 669 7.550196 GTCCTTTTTGACATTGCAATATGGAAT 59.450 33.333 12.53 0.00 39.02 3.01
512 670 6.873076 GTCCTTTTTGACATTGCAATATGGAA 59.127 34.615 12.53 2.70 36.00 3.53
513 671 6.211184 AGTCCTTTTTGACATTGCAATATGGA 59.789 34.615 12.53 9.56 37.73 3.41
514 672 6.400568 AGTCCTTTTTGACATTGCAATATGG 58.599 36.000 12.53 7.35 37.73 2.74
515 673 7.894376 AAGTCCTTTTTGACATTGCAATATG 57.106 32.000 12.53 4.91 37.73 1.78
519 677 9.995003 AATAATAAGTCCTTTTTGACATTGCAA 57.005 25.926 0.00 0.00 37.73 4.08
520 678 9.995003 AAATAATAAGTCCTTTTTGACATTGCA 57.005 25.926 0.00 0.00 37.73 4.08
530 688 9.603921 TCCGATTCGTAAATAATAAGTCCTTTT 57.396 29.630 5.20 0.00 0.00 2.27
531 689 9.257651 CTCCGATTCGTAAATAATAAGTCCTTT 57.742 33.333 5.20 0.00 0.00 3.11
532 690 7.871463 CCTCCGATTCGTAAATAATAAGTCCTT 59.129 37.037 5.20 0.00 0.00 3.36
533 691 7.376615 CCTCCGATTCGTAAATAATAAGTCCT 58.623 38.462 5.20 0.00 0.00 3.85
534 692 6.589139 CCCTCCGATTCGTAAATAATAAGTCC 59.411 42.308 5.20 0.00 0.00 3.85
535 693 7.373493 TCCCTCCGATTCGTAAATAATAAGTC 58.627 38.462 5.20 0.00 0.00 3.01
536 694 7.015001 ACTCCCTCCGATTCGTAAATAATAAGT 59.985 37.037 5.20 0.00 0.00 2.24
537 695 7.376615 ACTCCCTCCGATTCGTAAATAATAAG 58.623 38.462 5.20 0.00 0.00 1.73
538 696 7.294017 ACTCCCTCCGATTCGTAAATAATAA 57.706 36.000 5.20 0.00 0.00 1.40
539 697 6.906157 ACTCCCTCCGATTCGTAAATAATA 57.094 37.500 5.20 0.00 0.00 0.98
540 698 5.803237 ACTCCCTCCGATTCGTAAATAAT 57.197 39.130 5.20 0.00 0.00 1.28
541 699 6.713762 TTACTCCCTCCGATTCGTAAATAA 57.286 37.500 5.20 0.00 0.00 1.40
542 700 6.906157 ATTACTCCCTCCGATTCGTAAATA 57.094 37.500 5.20 0.00 0.00 1.40
543 701 5.803237 ATTACTCCCTCCGATTCGTAAAT 57.197 39.130 5.20 0.00 0.00 1.40
544 702 5.603170 AATTACTCCCTCCGATTCGTAAA 57.397 39.130 5.20 0.00 0.00 2.01
545 703 5.361857 AGAAATTACTCCCTCCGATTCGTAA 59.638 40.000 5.20 0.00 0.00 3.18
546 704 4.891756 AGAAATTACTCCCTCCGATTCGTA 59.108 41.667 5.20 0.00 0.00 3.43
547 705 3.705072 AGAAATTACTCCCTCCGATTCGT 59.295 43.478 5.20 0.00 0.00 3.85
548 706 4.323553 AGAAATTACTCCCTCCGATTCG 57.676 45.455 0.00 0.00 0.00 3.34
549 707 6.408107 AGTAGAAATTACTCCCTCCGATTC 57.592 41.667 0.00 0.00 0.00 2.52
550 708 6.612049 AGAAGTAGAAATTACTCCCTCCGATT 59.388 38.462 0.00 0.00 0.00 3.34
551 709 6.041069 CAGAAGTAGAAATTACTCCCTCCGAT 59.959 42.308 0.00 0.00 0.00 4.18
552 710 5.360144 CAGAAGTAGAAATTACTCCCTCCGA 59.640 44.000 0.00 0.00 0.00 4.55
553 711 5.127356 ACAGAAGTAGAAATTACTCCCTCCG 59.873 44.000 0.00 0.00 0.00 4.63
554 712 6.381707 AGACAGAAGTAGAAATTACTCCCTCC 59.618 42.308 0.00 0.00 0.00 4.30
555 713 7.122948 TGAGACAGAAGTAGAAATTACTCCCTC 59.877 40.741 0.00 0.00 0.00 4.30
556 714 6.954684 TGAGACAGAAGTAGAAATTACTCCCT 59.045 38.462 0.00 0.00 0.00 4.20
557 715 7.171630 TGAGACAGAAGTAGAAATTACTCCC 57.828 40.000 0.00 0.00 0.00 4.30
558 716 9.092876 CAATGAGACAGAAGTAGAAATTACTCC 57.907 37.037 0.00 0.00 0.00 3.85
559 717 8.599774 GCAATGAGACAGAAGTAGAAATTACTC 58.400 37.037 0.00 0.00 0.00 2.59
560 718 8.317679 AGCAATGAGACAGAAGTAGAAATTACT 58.682 33.333 0.00 0.00 0.00 2.24
561 719 8.485976 AGCAATGAGACAGAAGTAGAAATTAC 57.514 34.615 0.00 0.00 0.00 1.89
562 720 7.489435 CGAGCAATGAGACAGAAGTAGAAATTA 59.511 37.037 0.00 0.00 0.00 1.40
563 721 6.312426 CGAGCAATGAGACAGAAGTAGAAATT 59.688 38.462 0.00 0.00 0.00 1.82
564 722 5.809562 CGAGCAATGAGACAGAAGTAGAAAT 59.190 40.000 0.00 0.00 0.00 2.17
565 723 5.048013 TCGAGCAATGAGACAGAAGTAGAAA 60.048 40.000 0.00 0.00 0.00 2.52
566 724 4.459337 TCGAGCAATGAGACAGAAGTAGAA 59.541 41.667 0.00 0.00 0.00 2.10
567 725 4.010349 TCGAGCAATGAGACAGAAGTAGA 58.990 43.478 0.00 0.00 0.00 2.59
568 726 4.095632 TCTCGAGCAATGAGACAGAAGTAG 59.904 45.833 7.81 0.00 37.55 2.57
569 727 4.010349 TCTCGAGCAATGAGACAGAAGTA 58.990 43.478 7.81 0.00 37.55 2.24
570 728 2.822561 TCTCGAGCAATGAGACAGAAGT 59.177 45.455 7.81 0.00 37.55 3.01
571 729 3.500558 TCTCGAGCAATGAGACAGAAG 57.499 47.619 7.81 0.00 37.55 2.85
572 730 3.942130 TTCTCGAGCAATGAGACAGAA 57.058 42.857 7.81 0.00 41.94 3.02
626 784 3.503748 GGGTATGGCAGCACTATCAATTC 59.496 47.826 0.00 0.00 0.00 2.17
634 792 1.141657 CAGTATGGGTATGGCAGCACT 59.858 52.381 0.00 0.00 0.00 4.40
635 793 1.597742 CAGTATGGGTATGGCAGCAC 58.402 55.000 0.00 0.00 0.00 4.40
647 805 4.685169 AATTTGTTCGACAGCAGTATGG 57.315 40.909 0.00 0.00 35.86 2.74
648 806 6.408858 ACTAATTTGTTCGACAGCAGTATG 57.591 37.500 0.00 0.00 40.87 2.39
649 807 5.581085 GGACTAATTTGTTCGACAGCAGTAT 59.419 40.000 0.00 0.00 0.00 2.12
650 808 4.927425 GGACTAATTTGTTCGACAGCAGTA 59.073 41.667 0.00 0.00 0.00 2.74
651 809 3.746492 GGACTAATTTGTTCGACAGCAGT 59.254 43.478 0.00 0.00 0.00 4.40
652 810 3.997021 AGGACTAATTTGTTCGACAGCAG 59.003 43.478 0.00 0.00 0.00 4.24
670 828 5.163814 GCTGATATATGAATTTGCCGAGGAC 60.164 44.000 0.00 0.00 0.00 3.85
677 835 8.795341 CAAATCGATGCTGATATATGAATTTGC 58.205 33.333 0.00 0.00 0.00 3.68
697 855 4.408182 ACCCAAGAGGAGATACAAATCG 57.592 45.455 0.00 0.00 39.89 3.34
703 861 3.644335 ACCTGTACCCAAGAGGAGATAC 58.356 50.000 3.32 0.00 41.34 2.24
825 986 9.662947 CATCTATATCTCATTGCACTTATCCAA 57.337 33.333 0.00 0.00 0.00 3.53
980 1141 5.360591 TCATTTCTTCCTTAGGCTCGAATC 58.639 41.667 0.00 0.00 0.00 2.52
981 1142 5.359194 TCATTTCTTCCTTAGGCTCGAAT 57.641 39.130 0.00 0.00 0.00 3.34
988 1151 4.578105 GGCAGACATCATTTCTTCCTTAGG 59.422 45.833 0.00 0.00 0.00 2.69
990 1153 5.178096 TGGCAGACATCATTTCTTCCTTA 57.822 39.130 0.00 0.00 28.58 2.69
991 1154 4.038271 TGGCAGACATCATTTCTTCCTT 57.962 40.909 0.00 0.00 28.58 3.36
994 1157 3.426695 CCGTTGGCAGACATCATTTCTTC 60.427 47.826 0.00 0.00 0.00 2.87
1531 1694 1.448893 TTCGAATGTAGTGGCGGCC 60.449 57.895 13.32 13.32 0.00 6.13
2011 2185 1.968704 TCTCTGCTATCGATCGGTGT 58.031 50.000 16.41 4.57 0.00 4.16
2041 2215 2.386661 TCTGAAACTCTGAATCGGCC 57.613 50.000 0.00 0.00 0.00 6.13
2076 2250 6.813152 ACGGAAAGCATCATTCTTAATTTTGG 59.187 34.615 0.00 0.00 0.00 3.28
2093 2267 8.764524 ATAGATTTGATAGTCATACGGAAAGC 57.235 34.615 0.00 0.00 0.00 3.51
2169 2343 3.005554 CCGTCATCATATCAGGCCAATC 58.994 50.000 5.01 0.00 0.00 2.67
2222 2396 5.871396 TGGATTCCTAGTTGTACATCCTC 57.129 43.478 3.95 0.00 32.78 3.71
2237 2411 2.039084 AGCGATTACCTGGATGGATTCC 59.961 50.000 0.00 0.00 45.69 3.01
2244 2418 0.394565 GCCTGAGCGATTACCTGGAT 59.605 55.000 0.00 0.00 0.00 3.41
2259 2433 3.449018 ACACTAGTAACTGATCCAGCCTG 59.551 47.826 0.00 0.00 34.37 4.85
2260 2434 3.714144 ACACTAGTAACTGATCCAGCCT 58.286 45.455 0.00 0.00 34.37 4.58
2261 2435 4.473477 AACACTAGTAACTGATCCAGCC 57.527 45.455 0.00 0.00 34.37 4.85
2310 2484 9.865321 ATTGATTTGTCCATTTCTCACTTTATG 57.135 29.630 0.00 0.00 0.00 1.90
2325 2499 9.696917 ACACAAATAGAGAAAATTGATTTGTCC 57.303 29.630 8.02 0.00 44.69 4.02
2795 2969 9.733556 AGTGTTACCTGTAATTGTTATGATCAA 57.266 29.630 0.00 0.00 0.00 2.57
2796 2970 9.161629 CAGTGTTACCTGTAATTGTTATGATCA 57.838 33.333 0.00 0.00 0.00 2.92
2797 2971 9.378551 TCAGTGTTACCTGTAATTGTTATGATC 57.621 33.333 0.00 0.00 34.02 2.92
2798 2972 9.905713 ATCAGTGTTACCTGTAATTGTTATGAT 57.094 29.630 0.00 0.00 34.02 2.45
2799 2973 9.733556 AATCAGTGTTACCTGTAATTGTTATGA 57.266 29.630 0.00 0.00 34.02 2.15
2803 2977 8.908903 TCAAAATCAGTGTTACCTGTAATTGTT 58.091 29.630 0.00 0.00 34.02 2.83
2804 2978 8.349983 GTCAAAATCAGTGTTACCTGTAATTGT 58.650 33.333 0.00 0.00 34.02 2.71
2805 2979 7.807907 GGTCAAAATCAGTGTTACCTGTAATTG 59.192 37.037 0.00 5.48 34.02 2.32
2806 2980 7.724061 AGGTCAAAATCAGTGTTACCTGTAATT 59.276 33.333 0.00 0.00 34.64 1.40
2807 2981 7.231467 AGGTCAAAATCAGTGTTACCTGTAAT 58.769 34.615 0.00 0.00 34.64 1.89
2808 2982 6.597562 AGGTCAAAATCAGTGTTACCTGTAA 58.402 36.000 0.00 0.00 34.64 2.41
2809 2983 6.182507 AGGTCAAAATCAGTGTTACCTGTA 57.817 37.500 0.00 0.00 34.64 2.74
2810 2984 5.048846 AGGTCAAAATCAGTGTTACCTGT 57.951 39.130 0.00 0.00 34.64 4.00
2811 2985 6.934645 TCTTAGGTCAAAATCAGTGTTACCTG 59.065 38.462 0.00 0.00 36.57 4.00
2812 2986 7.074653 TCTTAGGTCAAAATCAGTGTTACCT 57.925 36.000 0.00 0.00 39.19 3.08
2813 2987 7.065923 GGATCTTAGGTCAAAATCAGTGTTACC 59.934 40.741 0.00 0.00 0.00 2.85
2814 2988 7.606456 TGGATCTTAGGTCAAAATCAGTGTTAC 59.394 37.037 0.00 0.00 0.00 2.50
2815 2989 7.685481 TGGATCTTAGGTCAAAATCAGTGTTA 58.315 34.615 0.00 0.00 0.00 2.41
2816 2990 6.542821 TGGATCTTAGGTCAAAATCAGTGTT 58.457 36.000 0.00 0.00 0.00 3.32
2817 2991 6.126863 TGGATCTTAGGTCAAAATCAGTGT 57.873 37.500 0.00 0.00 0.00 3.55
2818 2992 6.881065 TCTTGGATCTTAGGTCAAAATCAGTG 59.119 38.462 0.00 0.00 0.00 3.66
2819 2993 7.020827 TCTTGGATCTTAGGTCAAAATCAGT 57.979 36.000 0.00 0.00 0.00 3.41
2820 2994 7.928307 TTCTTGGATCTTAGGTCAAAATCAG 57.072 36.000 0.00 0.00 0.00 2.90
2821 2995 8.704849 TTTTCTTGGATCTTAGGTCAAAATCA 57.295 30.769 0.00 0.00 0.00 2.57
2827 3001 9.672673 CTTTCTATTTTCTTGGATCTTAGGTCA 57.327 33.333 0.00 0.00 0.00 4.02
2828 3002 9.674068 ACTTTCTATTTTCTTGGATCTTAGGTC 57.326 33.333 0.00 0.00 0.00 3.85
2834 3008 9.674068 GGAGTTACTTTCTATTTTCTTGGATCT 57.326 33.333 0.00 0.00 0.00 2.75
2835 3009 9.674068 AGGAGTTACTTTCTATTTTCTTGGATC 57.326 33.333 0.00 0.00 0.00 3.36
2872 3046 9.520515 AGGTGTTACAAGAGATTTCATTGTAAT 57.479 29.630 17.03 0.00 45.76 1.89
2873 3047 8.918202 AGGTGTTACAAGAGATTTCATTGTAA 57.082 30.769 13.01 13.01 43.48 2.41
2874 3048 8.918202 AAGGTGTTACAAGAGATTTCATTGTA 57.082 30.769 0.00 5.00 38.14 2.41
2875 3049 7.721399 AGAAGGTGTTACAAGAGATTTCATTGT 59.279 33.333 0.00 6.47 40.17 2.71
2876 3050 8.103948 AGAAGGTGTTACAAGAGATTTCATTG 57.896 34.615 0.00 0.00 0.00 2.82
2877 3051 8.697507 AAGAAGGTGTTACAAGAGATTTCATT 57.302 30.769 0.00 0.00 0.00 2.57
2878 3052 7.118390 CGAAGAAGGTGTTACAAGAGATTTCAT 59.882 37.037 0.00 0.00 0.00 2.57
2879 3053 6.423905 CGAAGAAGGTGTTACAAGAGATTTCA 59.576 38.462 0.00 0.00 0.00 2.69
2880 3054 6.618805 GCGAAGAAGGTGTTACAAGAGATTTC 60.619 42.308 0.00 0.00 0.00 2.17
2881 3055 5.179555 GCGAAGAAGGTGTTACAAGAGATTT 59.820 40.000 0.00 0.00 0.00 2.17
2882 3056 4.691216 GCGAAGAAGGTGTTACAAGAGATT 59.309 41.667 0.00 0.00 0.00 2.40
2883 3057 4.246458 GCGAAGAAGGTGTTACAAGAGAT 58.754 43.478 0.00 0.00 0.00 2.75
2884 3058 3.650139 GCGAAGAAGGTGTTACAAGAGA 58.350 45.455 0.00 0.00 0.00 3.10
2885 3059 2.408704 CGCGAAGAAGGTGTTACAAGAG 59.591 50.000 0.00 0.00 0.00 2.85
2886 3060 2.400399 CGCGAAGAAGGTGTTACAAGA 58.600 47.619 0.00 0.00 0.00 3.02
2887 3061 1.459592 CCGCGAAGAAGGTGTTACAAG 59.540 52.381 8.23 0.00 0.00 3.16
2888 3062 1.202557 ACCGCGAAGAAGGTGTTACAA 60.203 47.619 8.23 0.00 38.54 2.41
2889 3063 0.390124 ACCGCGAAGAAGGTGTTACA 59.610 50.000 8.23 0.00 38.54 2.41
2890 3064 2.352503 TACCGCGAAGAAGGTGTTAC 57.647 50.000 8.23 0.00 40.08 2.50
2891 3065 2.035704 TGTTACCGCGAAGAAGGTGTTA 59.964 45.455 8.23 0.00 40.08 2.41
2892 3066 1.202557 TGTTACCGCGAAGAAGGTGTT 60.203 47.619 8.23 0.00 40.08 3.32
2893 3067 0.390124 TGTTACCGCGAAGAAGGTGT 59.610 50.000 8.23 0.00 40.08 4.16
2894 3068 1.504359 TTGTTACCGCGAAGAAGGTG 58.496 50.000 8.23 0.00 40.08 4.00
2895 3069 2.028385 AGATTGTTACCGCGAAGAAGGT 60.028 45.455 8.23 0.00 42.28 3.50
2896 3070 2.603560 GAGATTGTTACCGCGAAGAAGG 59.396 50.000 8.23 0.00 0.00 3.46
2897 3071 3.304559 CAGAGATTGTTACCGCGAAGAAG 59.695 47.826 8.23 0.00 0.00 2.85
2898 3072 3.250744 CAGAGATTGTTACCGCGAAGAA 58.749 45.455 8.23 0.00 0.00 2.52
2899 3073 2.876091 CAGAGATTGTTACCGCGAAGA 58.124 47.619 8.23 0.00 0.00 2.87
2900 3074 1.324736 GCAGAGATTGTTACCGCGAAG 59.675 52.381 8.23 0.00 0.00 3.79
2901 3075 1.337354 TGCAGAGATTGTTACCGCGAA 60.337 47.619 8.23 0.00 0.00 4.70
2902 3076 0.245266 TGCAGAGATTGTTACCGCGA 59.755 50.000 8.23 0.00 0.00 5.87
2903 3077 1.075542 TTGCAGAGATTGTTACCGCG 58.924 50.000 0.00 0.00 0.00 6.46
2904 3078 2.742053 TCTTTGCAGAGATTGTTACCGC 59.258 45.455 2.15 0.00 0.00 5.68
2905 3079 3.997021 AGTCTTTGCAGAGATTGTTACCG 59.003 43.478 10.53 0.00 0.00 4.02
2906 3080 5.389935 CGAAGTCTTTGCAGAGATTGTTACC 60.390 44.000 10.53 0.00 0.00 2.85
2907 3081 5.389935 CCGAAGTCTTTGCAGAGATTGTTAC 60.390 44.000 10.53 0.00 0.00 2.50
2908 3082 4.690748 CCGAAGTCTTTGCAGAGATTGTTA 59.309 41.667 10.53 0.00 0.00 2.41
2909 3083 3.499918 CCGAAGTCTTTGCAGAGATTGTT 59.500 43.478 10.53 4.87 0.00 2.83
2910 3084 3.070018 CCGAAGTCTTTGCAGAGATTGT 58.930 45.455 10.53 0.00 0.00 2.71
2911 3085 3.070018 ACCGAAGTCTTTGCAGAGATTG 58.930 45.455 10.53 0.00 0.00 2.67
2912 3086 3.409026 ACCGAAGTCTTTGCAGAGATT 57.591 42.857 10.53 3.04 0.00 2.40
2913 3087 4.537135 TTACCGAAGTCTTTGCAGAGAT 57.463 40.909 10.53 0.00 0.00 2.75
2914 3088 4.038763 TCTTTACCGAAGTCTTTGCAGAGA 59.961 41.667 2.15 2.15 36.70 3.10
2915 3089 4.307432 TCTTTACCGAAGTCTTTGCAGAG 58.693 43.478 0.00 0.00 36.70 3.35
2916 3090 4.307432 CTCTTTACCGAAGTCTTTGCAGA 58.693 43.478 0.00 0.00 36.70 4.26
2917 3091 3.433615 CCTCTTTACCGAAGTCTTTGCAG 59.566 47.826 0.00 0.00 36.70 4.41
2918 3092 3.399330 CCTCTTTACCGAAGTCTTTGCA 58.601 45.455 0.00 0.00 36.70 4.08
2919 3093 2.159824 GCCTCTTTACCGAAGTCTTTGC 59.840 50.000 0.00 0.00 36.70 3.68
2920 3094 3.433615 CAGCCTCTTTACCGAAGTCTTTG 59.566 47.826 0.00 0.00 36.70 2.77
2921 3095 3.665190 CAGCCTCTTTACCGAAGTCTTT 58.335 45.455 0.00 0.00 36.70 2.52
2922 3096 2.613223 GCAGCCTCTTTACCGAAGTCTT 60.613 50.000 0.00 0.00 36.70 3.01
2923 3097 1.066787 GCAGCCTCTTTACCGAAGTCT 60.067 52.381 0.00 0.00 36.70 3.24
2924 3098 1.337823 TGCAGCCTCTTTACCGAAGTC 60.338 52.381 0.00 0.00 36.70 3.01
2925 3099 0.685097 TGCAGCCTCTTTACCGAAGT 59.315 50.000 0.00 0.00 36.70 3.01
2926 3100 1.808411 TTGCAGCCTCTTTACCGAAG 58.192 50.000 0.00 0.00 36.67 3.79
2927 3101 2.489938 ATTGCAGCCTCTTTACCGAA 57.510 45.000 0.00 0.00 0.00 4.30
2928 3102 2.489938 AATTGCAGCCTCTTTACCGA 57.510 45.000 0.00 0.00 0.00 4.69
2929 3103 3.309954 GTCTAATTGCAGCCTCTTTACCG 59.690 47.826 0.00 0.00 0.00 4.02
2930 3104 4.333926 CAGTCTAATTGCAGCCTCTTTACC 59.666 45.833 0.00 0.00 0.00 2.85
2931 3105 4.333926 CCAGTCTAATTGCAGCCTCTTTAC 59.666 45.833 0.00 0.00 0.00 2.01
2932 3106 4.225042 TCCAGTCTAATTGCAGCCTCTTTA 59.775 41.667 0.00 0.00 0.00 1.85
2933 3107 3.009473 TCCAGTCTAATTGCAGCCTCTTT 59.991 43.478 0.00 0.00 0.00 2.52
2934 3108 2.573462 TCCAGTCTAATTGCAGCCTCTT 59.427 45.455 0.00 0.00 0.00 2.85
2935 3109 2.170187 CTCCAGTCTAATTGCAGCCTCT 59.830 50.000 0.00 0.00 0.00 3.69
2936 3110 2.559440 CTCCAGTCTAATTGCAGCCTC 58.441 52.381 0.00 0.00 0.00 4.70
2937 3111 1.407989 GCTCCAGTCTAATTGCAGCCT 60.408 52.381 0.00 0.00 0.00 4.58
2938 3112 1.020437 GCTCCAGTCTAATTGCAGCC 58.980 55.000 0.00 0.00 0.00 4.85
2939 3113 1.742761 TGCTCCAGTCTAATTGCAGC 58.257 50.000 0.00 0.00 0.00 5.25
2940 3114 2.094894 CGTTGCTCCAGTCTAATTGCAG 59.905 50.000 0.00 0.00 0.00 4.41
2941 3115 2.076100 CGTTGCTCCAGTCTAATTGCA 58.924 47.619 0.00 0.00 0.00 4.08
2942 3116 2.346803 TCGTTGCTCCAGTCTAATTGC 58.653 47.619 0.00 0.00 0.00 3.56
2943 3117 3.935203 ACATCGTTGCTCCAGTCTAATTG 59.065 43.478 0.00 0.00 0.00 2.32
2944 3118 4.207891 ACATCGTTGCTCCAGTCTAATT 57.792 40.909 0.00 0.00 0.00 1.40
2945 3119 3.895232 ACATCGTTGCTCCAGTCTAAT 57.105 42.857 0.00 0.00 0.00 1.73
2946 3120 3.244078 ACAACATCGTTGCTCCAGTCTAA 60.244 43.478 6.77 0.00 0.00 2.10
2947 3121 2.299013 ACAACATCGTTGCTCCAGTCTA 59.701 45.455 6.77 0.00 0.00 2.59
2948 3122 1.070758 ACAACATCGTTGCTCCAGTCT 59.929 47.619 6.77 0.00 0.00 3.24
2949 3123 1.512926 ACAACATCGTTGCTCCAGTC 58.487 50.000 6.77 0.00 0.00 3.51
2950 3124 1.967319 AACAACATCGTTGCTCCAGT 58.033 45.000 6.77 0.00 0.00 4.00
2951 3125 4.685169 AATAACAACATCGTTGCTCCAG 57.315 40.909 6.77 0.00 0.00 3.86
2952 3126 5.446143 AAAATAACAACATCGTTGCTCCA 57.554 34.783 6.77 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.