>input_sequence_63868
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------------------------------------------ATGATGTCTGCCAACGGCGACTCTCCGGCCGGCGCCGC
CGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACGCTGGTGCTGATCCAGGCGAAGCGCGTGACGG
AGCAGCGGGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTGGAGCGCGGG
CCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAAGCACGCCGC
CGCCGTCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCGGGGAGGAGC
GGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGACGCCATCGTCGGCGCCGGCGGCGCCGCCAACCAG
CTGAAGCCGGACTCCGCCGAGGAGATGGAGCTCGCCGACGACGCCGACGAGCACCCGCCGTCGCCGATGATGGTCATGCC
CATCCAAGGTAAGGGCCGCCAC-----TACATTCGAACGCGAACTTAC------TTGCCACTTGCCACGTACTCATATGT
GTCGCACGTTTTTTTGCCGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCAGTCCCAGCGCGAGTGCTCCGAT
CCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCGACGTTCGGCGC
CGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGGGGCGGGGACGACGAGCATGGGGAGGCAGA
TGTCGGAGGCGCTGGAGAGGGGCAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAGGCGGACAGG
GAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCTCTGA-----
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>chr3A_1_TraesCS3A01G441300
GATTATTAGCGAAAGAAGCGCGTTCTCATTTTGTGTAGGATAGATGACATGCTGGACATGCTAATTATATTTAGCAAACA
GAGTTTGTCTAGGTGGTGACATGCTGGTCATGATGGCA---------TGATATTTTGTGAACAACTGATCCATATAAGCA
ACGGAAGGATTAACCGATCTTTTGACATTTTTATGTGTTCCTTGCATCATGCTTCTGAAATCCCTCTTCATATTTCAGCA
TATTACACATAATTCGGTGTGAG--------TGCTGTGTTCTGCTTTCAAAATTATGACAGAAGATGAGATA--------
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----------------------------------------------------TAATTTATTGCCATATACTCCCTCCGTT
CCTAAATACTCCCTCCGGTTTATGCAATGCGCCCTAAATCTTGTCTATTATGGAAACACACGTAAATTTAACTGTGTCTT
CTAAACTGTGATGGAGTATAAGTTTTTCTAGAGATTTCACTATGGACTACATACGGATGTGTATACACGTAGTTTAGAGT
GTAGATTCACTCATTTTGCTCTGTACGTATTCCATATTGCAATGTCAAAAAGGACTTATTATTTACGAATCGGAGGGAGT
AATTTCTACTTCTGTCTCATTGCTCGAGAAATGCCAGCCTGTGCTCTCTGTGGCTGTGGATGCGAATTGATAGTGCTGCC
ATACCCATACTGCTGTCGAACAAATTAGTCCTCGGCAAATTCATATATCAGCATCGATTTGTATCTCCTCTTGGGTACAG
GTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGGCTGTGCTGCCAGCAGTGGTAT
GGCAGTAAATCTATTAAC---TTTTTTGGATAAGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTTAAGTTCTTG
CCAATTTCTGCCCTGCCGATTTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCCGGCGAGGCCTCTCGATCTCG
ACGCGTGCCCATCCTCTCCTGAT--TCGAGCCTAAGGAAGAAATGATGTCTGCCAACGGCGACTCTCCGGCCGGCGCCGC
CGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACGCTGGTGCTGATCCAGGCGAAGCGCGTGACGG
AGCAGCGGGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTGGAGCGCGGG
CCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAAGCACGCCGC
CGCCGTCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCGGGGAGGAGC
GGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGACGCCATCGTCGGCGCCGGCGGCGCCGCCAACCAG
CTGAAGCCGGACTCCGCCGAGGAGATGGAGCTCGCCGACGACGCCGACGAGCACCCGCCGTCGCCGATGATGGTCATGCC
CATCCAAGGTAAGGGCCGCCAC-----TACATTCGAACGCGAACTTAC------TTGCCACTTGCCACGTACTCATATGT
GTCGCACGTTTTTTTGCCGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCAGTCCCAGCGCGAGTGCTCCGAT
CCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCGACGTTCGGCGC
CGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGGGGCGGGGACGACGAGCATGGGGAGGCAGA
TGTCGGAGGCGCTGGAGAGGGGCAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGAGGCGGACAGG
GAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCTCTGACGTCT
CGACCGGATGAATTCTCGTCGTCGACACCGATCGATAGCAGAGATAGGAGATGAGGCCGATTCAGAGTTTCAGATACTAC
TAAGTTAGACCAAAATTAAGAATGATGCTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTATTCTTCTCTA
GTTGTTCCTGATGTGAATGGTGGATTGGCCTGATATGATGACGGAATAATGTTTGTTGTCTAGATTAATTCCTTGGAGGA
TGTACAACTAGGAATCCATCCAGGTAATCGCTCAGGCTGGATCAGTTACTAGTGTTATTTATTTTGGGAGAAACATATTG
TTACATAAAGTGAGAAATGGACAAATCAATTTTCTCTATTTGTGTTGAGAGGATACTTTTTCGTGATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTTTTTTAGAAACACATG
TAACTTTATTGATCATAACAATTACAGGTAACACTGATTTTGACCTAAGATCCAAGAAAATAGAAAGTAACTCCTATGAC
TAAGAATTACAATGAAATCTCTTGTAACACCTTCTTCGCGGTAACAATCTCTGCAAAGACTTCGGTAAAGAGGCTGCAAT
TAGACTGGAGCAACGATGTTGTTATTTTTTCACCC
>chr3B_1
GATTATTAGCAAAAGAAGCGCGTTCTCATTTTGTGTAGGATAGATGACATGCTGGACATGCTAATTATATTTAGCAAACG
AAGTTTGTCTATGTGGTGACATGATATTTTGTGAACAACTGATCAACTGATATTTTGTGAACAACTGATCCATATAAGCG
ATGGAAGGATTAACCGATCTTTAGACATTTTTATGTGTTCCTTGCATCATGCTTCTGAAATCCCTCTTCATATTTCAGCA
TATTACACATAATTCGGTGTGAG--------TGCTGTGTTCTGCTGTCAAAATTATGACAGAAGACGAGATA--------
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----------------------------------------------------TAATTTATTGCCATATAATTTCTTCTCC
TG------------------------------------------------------------------------------
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----------TCTGTCTCATTGCTCGAGAAATGCCAGCCTGTGCTCTCTGTGGCTGTGGATGCTGATTGATGCTGCTGAC
ATAC------TGCTGTCGAACAAATTAATCCTCGTCAAATTCATATATCAGCATTAGTTTATGTCTCCTCTTGGGTACAG
GTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGGCTTTGCTGCCAGCAGTGGTAT
GGCAGTAAATGTATGAAC---TTTT-TGGATAGGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTTAAGTTCTTG
CCAATTTCTGTCATGCCGATCTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCTGGCGAGGCCTCTCGATCTCG
ACGCGTGCCCATCCTCTCCT---GATCGAGACCGAGCGAGAAATGATGTCCGCCAACGGCGACTCTCCGGCCGGCGCCGC
CGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCACGAGACTTTGGTGCTGATCCAGGCGAAGCGCGTGACGG
AGCAGCGCGCGGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTGGAACGCGGG
CCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCCTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAAGCACGCCAC
TGCCGCCGCCGCCGTCGCGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCGGGGAGGAGC
GGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGATGCCATCGTCGGCGCCGGCGGCGCCGCCAACCAG
CTGAAGCCGGACTCTGCCGAGGAGATGGAGCTCGCCGACGACGCGGACGAACACCCGCCGTCGCCGATGATGGTCATGCC
CATCCAAGGTAAGCGCCGCCAC-----TTCATTCCACGCACATGC-AC------TTGCCACTTGCCACGTACTCATATGT
GTCGCACGTTTTTTTGCGGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCGGTCCCAGCACGAGTGCTCCGAT
CCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCGACGTCGCAGCAGGACAGCGAGGCCACGTTCGGCGC
CGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGCGGCGGGGACCACGAGCATGGGGAGGCAGA
TGTCGGAGGCGCTGGAGAGGG-CAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGACGCGGACAGG
GAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCTCTGACGTCT
CGACCGGATGAGTTCTCGTCGTCGTCACCGATCGATAGCAGAGATAGGAGATGAAGCCGATTCAGAGTTTCAGATACTAC
TAAGTTAGATCAAAATTAAGAATGATACTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTATTCTTCTCTA
GTTGTTCCTGATGTGAATGGTGAATTGGCCTGATATGATGATGGAATAATGTTTGTTGTCTAGATTAATTCCTTGCAGGA
TGTACAACTACGAATCCGTCCAGGTAATCGCTATAGCTGGATCAGTTACTAGTGTTATTTATTTTGGGAGAAACGTATTG
TTAGACAAAGTGAGAAATTGACAAATCAATTTTCTCTATTTGTGTTGAGAGCATACTTTTT-------------------
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>chr3D_3
--TTATTAGCGAAAGAAGCGCGTTCTCATTTTGTGTAGAATAGATGACATGCTGGACATGCTAATTATATTTAGCAAACG
AAGTTTGTCTAGGTGGTGACATGCTGGTCATTATGGCA---------TGATATTTTGTGAACAACTGATCCATATAAGTG
ATGGAAGGATTAACCGGTCTATTGACATTTTTATGTGTTCCTCGCATCATGCTTCTGAAATCCCTCTTCATATTTCAGCA
TATTACACATAATTTGGTGTGAGTGGCTGAGTGCTGTGTTCTGCTGTCAAAATTATGACAGAAGACGAGATCTAGGGGCT
GTTCGGCAATCCACTGCTCCCTGAAATTCAAGGATCTGCAGAGCACCTGTTCCCCCGGTCCCTACTTTTTACCTTCAGCT
CCGCCAACCCCGGGAGCAGAGCGTGGAGTCGGAGGGATGCCGAACAGGCCTCTAATTTGTCACCATAATTTTTCATT--C
TG------------------------------------------------------------------------------
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----------TCTGTCTCATTGCTTGAGAAATGCCAGCCTTTGCTCTCTGTGGCTGTGGATGCCAATTGATGCTGCTGCC
ATAC------TGCTGTCGAACAAATTAATCCTCGCCAAATTCATATATCAGCATTGATTTATATCTCCTCTTGGGTACAG
GTAATGTTTGGGGTGGCATATTTGTTGCTTTACAAGTTTAATTTCCTGCTGATTTTGGCCTTTGCTGCCAGCAGTGGTAT
GGCAGTAAATCTATTAACTTTTTTT-TGGATAAGTGCAATGAGATATAGATGGCACTAGCTGTGCAGGGTTAAGTTCTTG
CCAATTTCTGCCATGCCGATTTTAATGGCCAAGGAAACAGCAGTGCATAAATCTCAGCCTGGCGAGGCCTCTCGATCTCG
ACGCGTGCCCATCCTCTCCTCCTGATCGAGACCGGGCAAGAAATGATGTCTGCCAACGGCGACTCTCCGGCCGGCGCTGC
CGTGACGACGCCGAGGTCGCGGCTGCCGCGGTGGACGCGGCATGAGACTTTGGTGCTGATCCAGGCGAAGCGCGTCACGG
AGCAGCGGGCCGCGCAGCCGGTGCGGCTCAAGTGGGCGGTGGTGTCGGCCTACTGCCGGCGGCACGGCGTGGAGCGCGGG
CCCATGCAGTGCCGCAAGCGCTGGGGCAACCTCTCGTGGGACCTCAAGAAGATCGTCGCCTGGGAGAAGAAGCACG----
--CCGCCGCCGCCGCCACGGGCGACGCGGACTCGGCGGCGCCGGAGCGCGAGTCGTTCTGGGACATGCGCGGGGAGCAGC
GGCGCGCCAGGCAGCTGCCGTCGTCGTTCGACCGGGAGGTCTACGACGCTATCGT---------CGGCGCCGCCAACCAG
CTGAAGCCGGACTCCGCCGAGGAGATGGAGCTCGCCGACGACGCCGACGAGCACCCGCCGTCGCCGATGATGGTCATGCC
CATCCAAGGTAAGCGCCGCCACACCCATACATTCGGACGCACGTACTCGCTACTTTGCCACTTGCCACGTACTCATACGT
GTCGCACGTTTTTTTGCGGCTGCGCAGCGAGAATGTACGTGCCGCCGGCCTCCTCCCAGTCCCAGCACGAGTGCTCCGAT
CCGGCGACGGAGAGCGCCAAGAAGCCGGCGTCGGACAAGAACTCCACGTCGCAGCAGGACAGCGAGGCCACGTTCGGCGC
TGGAGTCGGGGCGGAGGACACGGACACGGCGACGGCGACGCCAACGGCAGCGGCGGGGACGACGAGCATGGGGAGGCAGA
TGTCGGAGGCGCTGGAGAGGGGCAACCGTTTGCTGGCGGAGCAGCTGGAGGCGCAGAGGGCGAACTGGGACGCGGACAGG
GAGCACCGGAGGGCGCTCCTCGCCGCCGTCAACAAGCTCGCCGACGCCGCCGCCAGGATCGCCGAGAGGCTCTGACGTCT
CGACCGGATGAATTCTCGTCGTCTCG-CCGATCGATAGCAGAGATAGGAGATGAAGCCGATTCAGAATTTCAGATACTAC
TAAGTTAGATCAAAATTAAGAATGATACTTTCCGTATGACTATCAAATCTATCATAGATAATGTTGAGTATTCTTCTCTA
GTTGTTCCTGATGTGAATTGTGAATTGGCCTGATATGATGATGGAATAATGTTTGTTGTCTAGAT---------------
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>SNPs
-------------------------------------------------------------------------------S
S------------------------------S-----------------------------------------------S
-S------------------------------------------------------------------------------
---------------------------------------------S-------------------S--------------
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---------------------------------------------------------------------S-SS--S-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----------------------------------------------------S-------SS-------
----SSSSSS-----------------S------S-------------------S-----S-------------------
-------------------------------------------------------------S------------------
-------------------------S------------------------------------------------------
------------S----------------------------------------------S--------------------
--------------------SS--------S-SS--S-------------------------------------------
------------------------------------------------SS------------------------------
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------------------------------------------------------------------------------S-
S----S--------------------------------------------------------------------------
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-------------S--------------------------S-SSSS----------------------------------
-----------------S------------------------------------------------S-------------
--------------------------------------------------------------------S-----------
--------------------------------------------------S-----------------------------
----------------------------------------------------------------------S---------
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------------------------S-----------------------------S-------------------------
---------S----------------S-----------------------------------------------------
----------------------S------------------S---------------------------------S----
----------S------S--------------SSS---------------------------------------S-----
---S-S------------S--------------------------------S---------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_511
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-----------CCTCCGGTTTATGCAATGCG-------------------------------------------------
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>reverse_2418
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-----------------ATCCAGGTAATCGCTCAGGC-------------------------------------------
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