AutoCloner

Multiple sequence alignment - TraesCS3A01G432600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G432600	chr3A	100.000	2261	0	0	1	2261	673924439	673922179	0.000000e+00	4176.0
1	TraesCS3A01G432600	chr3A	78.484	1306	144	72	513	1753	674026016	674024783	0.000000e+00	728.0
2	TraesCS3A01G432600	chr3A	79.215	866	108	42	916	1757	674061254	674060437	9.190000e-149	536.0
3	TraesCS3A01G432600	chr3A	78.459	701	81	31	983	1640	674017994	674017321	5.850000e-106	394.0
4	TraesCS3A01G432600	chr3A	80.968	310	33	13	513	797	674061625	674061317	2.920000e-54	222.0
5	TraesCS3A01G432600	chr3A	88.750	80	4	1	2159	2233	673922340	673922261	2.390000e-15	93.5
6	TraesCS3A01G432600	chr3D	90.030	2297	136	29	1	2261	538516725	538514486	0.000000e+00	2887.0
7	TraesCS3A01G432600	chr3D	78.349	1284	145	77	513	1757	538700005	538698816	0.000000e+00	708.0
8	TraesCS3A01G432600	chr3D	80.152	791	78	37	880	1649	538574168	538573436	3.330000e-143	518.0
9	TraesCS3A01G432600	chr3D	82.729	469	76	5	6	470	7504994	7505461	1.620000e-111	412.0
10	TraesCS3A01G432600	chr3D	92.308	78	3	2	2159	2233	538514647	538514570	8.540000e-20	108.0
11	TraesCS3A01G432600	chr3B	89.804	2197	154	29	1	2162	713392947	713390786	0.000000e+00	2752.0
12	TraesCS3A01G432600	chr3B	78.692	1300	154	67	513	1749	713969268	713968029	0.000000e+00	752.0
13	TraesCS3A01G432600	chr3B	79.959	973	122	44	513	1463	713988674	713987753	0.000000e+00	649.0
14	TraesCS3A01G432600	chr3B	87.963	108	10	3	680	786	713493096	713492991	8.480000e-25	124.0
15	TraesCS3A01G432600	chr3B	87.302	63	3	2	2159	2216	713390848	713390786	1.450000e-07	67.6
16	TraesCS3A01G432600	chr1D	83.156	469	74	5	6	470	104298101	104297634	7.470000e-115	424.0
17	TraesCS3A01G432600	chr1D	87.671	146	14	1	1843	1984	291789481	291789626	1.390000e-37	167.0
18	TraesCS3A01G432600	chr5B	81.450	469	81	6	6	470	509658307	509657841	1.640000e-101	379.0
19	TraesCS3A01G432600	chr5A	77.200	250	49	8	1760	2006	328029145	328029389	3.030000e-29	139.0
20	TraesCS3A01G432600	chr4D	88.119	101	12	0	1899	1999	322665344	322665244	1.100000e-23	121.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G432600	chr3A	673922179	673924439	2260	True	2134.75	4176	94.3750	1	2261	2	chr3A.!!$R3	2260
1	TraesCS3A01G432600	chr3A	674024783	674026016	1233	True	728.00	728	78.4840	513	1753	1	chr3A.!!$R2	1240
2	TraesCS3A01G432600	chr3A	674017321	674017994	673	True	394.00	394	78.4590	983	1640	1	chr3A.!!$R1	657
3	TraesCS3A01G432600	chr3A	674060437	674061625	1188	True	379.00	536	80.0915	513	1757	2	chr3A.!!$R4	1244
4	TraesCS3A01G432600	chr3D	538514486	538516725	2239	True	1497.50	2887	91.1690	1	2261	2	chr3D.!!$R3	2260
5	TraesCS3A01G432600	chr3D	538698816	538700005	1189	True	708.00	708	78.3490	513	1757	1	chr3D.!!$R2	1244
6	TraesCS3A01G432600	chr3D	538573436	538574168	732	True	518.00	518	80.1520	880	1649	1	chr3D.!!$R1	769
7	TraesCS3A01G432600	chr3B	713390786	713392947	2161	True	1409.80	2752	88.5530	1	2216	2	chr3B.!!$R4	2215
8	TraesCS3A01G432600	chr3B	713968029	713969268	1239	True	752.00	752	78.6920	513	1749	1	chr3B.!!$R2	1236
9	TraesCS3A01G432600	chr3B	713987753	713988674	921	True	649.00	649	79.9590	513	1463	1	chr3B.!!$R3	950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
968	1050	0.170784	CACAACACAAGTGCACAGCA	59.829	50.0	21.04	0.0	35.6	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1912	2077	0.321298	TCGAGGGTGGCAAGTTTAGC	60.321	55.0	0.0	0.0	0.0	3.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	1.955778	TGCTCCCACAACATGACAAAG	59.044	47.619	0.00	0.00	0.00	2.77
67	68	0.911769	TAAGGTGCTCCATGGTGAGG	59.088	55.000	17.98	5.35	35.89	3.86
133	144	4.089361	AGGCCTCCTTAACTTTCCAATTG	58.911	43.478	0.00	0.00	0.00	2.32
136	147	5.221641	GGCCTCCTTAACTTTCCAATTGTTT	60.222	40.000	4.43	0.00	0.00	2.83
157	169	4.336889	TGCGAGGAGGAAAAGTATATGG	57.663	45.455	0.00	0.00	0.00	2.74
195	207	1.551883	GGTTTCTTGCCATTGAGCCAT	59.448	47.619	0.00	0.00	0.00	4.40
202	214	0.761702	GCCATTGAGCCATGGGGAAT	60.762	55.000	15.13	0.00	38.36	3.01
263	276	3.039011	TGGTAAGGCATAGAAGAGGTCC	58.961	50.000	0.00	0.00	0.00	4.46
273	286	0.836400	GAAGAGGTCCAGGTCCACCA	60.836	60.000	5.43	0.00	38.89	4.17
309	322	3.244181	CCCCAAACTCACCCAAATCTTTG	60.244	47.826	0.00	0.00	37.90	2.77
311	324	3.392882	CAAACTCACCCAAATCTTTGCC	58.607	45.455	0.00	0.00	36.86	4.52
313	326	1.202879	ACTCACCCAAATCTTTGCCGA	60.203	47.619	0.00	0.00	36.86	5.54
368	382	4.954933	GCCCGAGCAAACCTATCA	57.045	55.556	0.00	0.00	39.53	2.15
387	401	6.659242	CCTATCAAGGTTGAGTACACCAAATT	59.341	38.462	3.88	0.54	41.08	1.82
388	402	6.976934	ATCAAGGTTGAGTACACCAAATTT	57.023	33.333	3.88	0.00	41.08	1.82
393	407	5.659079	AGGTTGAGTACACCAAATTTCCAAA	59.341	36.000	3.88	0.00	0.00	3.28
409	423	2.083167	CAAAATGCTTTGGCCGACAT	57.917	45.000	0.00	0.00	38.64	3.06
411	425	3.784338	CAAAATGCTTTGGCCGACATAT	58.216	40.909	0.00	0.00	38.64	1.78
415	429	1.102978	GCTTTGGCCGACATATGGTT	58.897	50.000	7.80	0.00	0.00	3.67
518	547	6.992715	CCGAGGATAATACATTTGGATATCCC	59.007	42.308	19.34	1.87	41.86	3.85
588	618	0.961019	GAACCTTGGCAAGCATGTGA	59.039	50.000	21.77	0.00	0.00	3.58
709	774	0.903454	ACTTACCACTGGACCCTCCG	60.903	60.000	0.71	0.00	40.17	4.63
728	793	2.104792	CCGAAAGCATGGGAATCTCCTA	59.895	50.000	0.00	0.00	36.57	2.94
807	877	5.628797	TGTTCATTATCCACTGGCATCTA	57.371	39.130	0.00	0.00	0.00	1.98
808	878	5.368145	TGTTCATTATCCACTGGCATCTAC	58.632	41.667	0.00	0.00	0.00	2.59
809	879	5.130975	TGTTCATTATCCACTGGCATCTACT	59.869	40.000	0.00	0.00	0.00	2.57
810	880	6.326323	TGTTCATTATCCACTGGCATCTACTA	59.674	38.462	0.00	0.00	0.00	1.82
811	881	6.596309	TCATTATCCACTGGCATCTACTAG	57.404	41.667	0.00	0.00	0.00	2.57
812	882	6.077993	TCATTATCCACTGGCATCTACTAGT	58.922	40.000	0.00	0.00	0.00	2.57
853	929	3.648067	TGGAATGTCTATGGCCTTCCTAG	59.352	47.826	16.23	7.35	37.00	3.02
854	930	3.558109	GGAATGTCTATGGCCTTCCTAGC	60.558	52.174	3.32	0.00	33.98	3.42
855	931	2.478872	TGTCTATGGCCTTCCTAGCT	57.521	50.000	3.32	0.00	0.00	3.32
856	932	3.612795	TGTCTATGGCCTTCCTAGCTA	57.387	47.619	3.32	0.00	0.00	3.32
857	933	3.501349	TGTCTATGGCCTTCCTAGCTAG	58.499	50.000	14.20	14.20	0.00	3.42
858	934	3.117093	TGTCTATGGCCTTCCTAGCTAGT	60.117	47.826	19.31	0.90	0.00	2.57
859	935	4.105858	TGTCTATGGCCTTCCTAGCTAGTA	59.894	45.833	19.31	0.04	0.00	1.82
912	991	2.158943	GGTAGCTACCTCTTCGGCATTT	60.159	50.000	31.88	0.00	43.10	2.32
968	1050	0.170784	CACAACACAAGTGCACAGCA	59.829	50.000	21.04	0.00	35.60	4.41
974	1056	2.288702	ACACAAGTGCACAGCAACAAAA	60.289	40.909	21.04	0.00	41.47	2.44
1221	1336	0.108329	CGGCCTTCATACTGTCCGTT	60.108	55.000	0.00	0.00	32.93	4.44
1455	1584	2.472029	AGAGTGTGGAAGTAGGGATGG	58.528	52.381	0.00	0.00	0.00	3.51
1506	1639	3.106827	TGTCTGAAGTCATGCTGGGATA	58.893	45.455	0.00	0.00	0.00	2.59
1511	1646	4.454678	TGAAGTCATGCTGGGATATGAAC	58.545	43.478	0.00	0.00	35.29	3.18
1644	1785	3.391296	TGGAGAACCTCTTTACAAGTGCT	59.609	43.478	0.00	0.00	37.04	4.40
1652	1793	5.066505	ACCTCTTTACAAGTGCTGTTTCAAG	59.933	40.000	0.00	0.00	39.64	3.02
1730	1886	5.003804	GTCATGTTACCATCAAACTCCACT	58.996	41.667	0.00	0.00	0.00	4.00
1734	1890	2.568623	ACCATCAAACTCCACTGGTC	57.431	50.000	0.00	0.00	35.29	4.02
1735	1891	1.073923	ACCATCAAACTCCACTGGTCC	59.926	52.381	0.00	0.00	35.29	4.46
1780	1936	5.640357	ACGGAAATGCTAAAAATCTGACGTA	59.360	36.000	0.00	0.00	0.00	3.57
1781	1937	6.148150	ACGGAAATGCTAAAAATCTGACGTAA	59.852	34.615	0.00	0.00	0.00	3.18
1782	1938	7.148306	ACGGAAATGCTAAAAATCTGACGTAAT	60.148	33.333	0.00	0.00	0.00	1.89
1796	1961	4.328536	TGACGTAATGTTTTAGGCATGGT	58.671	39.130	0.00	0.00	0.00	3.55
1801	1966	7.477494	ACGTAATGTTTTAGGCATGGTAAATC	58.523	34.615	0.00	0.00	0.00	2.17
1802	1967	6.631238	CGTAATGTTTTAGGCATGGTAAATCG	59.369	38.462	0.00	0.00	0.00	3.34
1803	1968	6.767524	AATGTTTTAGGCATGGTAAATCGA	57.232	33.333	0.00	0.00	0.00	3.59
1832	1997	4.955925	TCGTGGCAATTTATGTTGGTAG	57.044	40.909	0.00	0.00	0.00	3.18
1854	2019	4.043435	AGAGGGATGGGAAATATAGTTGGC	59.957	45.833	0.00	0.00	0.00	4.52
1860	2025	4.348486	TGGGAAATATAGTTGGCAAGCAA	58.652	39.130	0.00	0.00	0.00	3.91
1888	2053	5.612725	TTTCCTGGCAAAGAAATGAACTT	57.387	34.783	7.96	0.00	0.00	2.66
1891	2056	4.766891	TCCTGGCAAAGAAATGAACTTAGG	59.233	41.667	0.00	0.00	0.00	2.69
1912	2077	1.065273	GATTTGCCATGCTCGCCAG	59.935	57.895	0.00	0.00	0.00	4.85
2009	2176	2.687935	CGTTGGATATTTGGGTCCCTTG	59.312	50.000	10.00	0.00	33.45	3.61
2019	2188	2.883026	TGGGTCCCTTGTTTAACCATG	58.117	47.619	10.00	0.00	33.27	3.66
2075	2244	8.621286	GTTACTGGATATTTTGTTTCGATGGAT	58.379	33.333	0.00	0.00	0.00	3.41
2089	2258	2.480419	CGATGGATGGCGGATTTTACTC	59.520	50.000	0.00	0.00	0.00	2.59
2116	2285	1.464997	GCTTGTCACCGGTGAAGATTC	59.535	52.381	37.75	24.78	41.85	2.52
2129	2298	5.352569	CGGTGAAGATTCATTTAGCTGAGTT	59.647	40.000	0.00	0.00	39.73	3.01
2188	2357	6.018669	CCGGTGAAGATTTATTTAGCTGAGTC	60.019	42.308	0.00	0.00	0.00	3.36
2207	2378	7.592903	GCTGAGTCATCTTTGTTTAAGAAAAGG	59.407	37.037	0.00	0.00	45.62	3.11
2225	2396	3.543680	AGGAATATGTCACCGGTGAAG	57.456	47.619	37.75	11.93	41.85	3.02
2229	2400	4.881850	GGAATATGTCACCGGTGAAGATTT	59.118	41.667	37.75	26.62	41.85	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	1.603455	CATTCGCCACACCCACCTT	60.603	57.895	0.00	0.00	0.00	3.50
35	36	2.162681	GCACCTTAGGCACTTTGTCAT	58.837	47.619	0.00	0.00	41.75	3.06
43	44	0.749454	CCATGGAGCACCTTAGGCAC	60.749	60.000	5.56	0.00	37.04	5.01
133	144	5.007724	CCATATACTTTTCCTCCTCGCAAAC	59.992	44.000	0.00	0.00	0.00	2.93
136	147	3.071023	CCCATATACTTTTCCTCCTCGCA	59.929	47.826	0.00	0.00	0.00	5.10
157	169	1.523032	CGAAGGACATTACCCCGCC	60.523	63.158	0.00	0.00	0.00	6.13
230	242	9.470399	TTCTATGCCTTACCATCGTATCTATTA	57.530	33.333	0.00	0.00	0.00	0.98
263	276	0.321919	CCTGTGACATGGTGGACCTG	60.322	60.000	0.00	0.00	36.82	4.00
291	304	2.035832	CGGCAAAGATTTGGGTGAGTTT	59.964	45.455	7.38	0.00	38.57	2.66
309	322	2.007608	GTATGAGTGGAAGGTTTCGGC	58.992	52.381	0.00	0.00	0.00	5.54
311	324	3.328382	TGGTATGAGTGGAAGGTTTCG	57.672	47.619	0.00	0.00	0.00	3.46
313	326	3.826729	GCTTTGGTATGAGTGGAAGGTTT	59.173	43.478	0.00	0.00	0.00	3.27
368	382	5.205056	TGGAAATTTGGTGTACTCAACCTT	58.795	37.500	0.00	0.64	0.00	3.50
393	407	1.682854	CCATATGTCGGCCAAAGCATT	59.317	47.619	2.24	0.00	42.56	3.56
415	429	2.008242	AGTGCAAGGTTAATTGGGCA	57.992	45.000	0.00	0.00	0.00	5.36
483	512	5.330233	TGTATTATCCTCGGCAGATTCCTA	58.670	41.667	0.00	0.00	0.00	2.94
588	618	7.013655	GTCCTGTGATAAAAATCCATGTATGCT	59.986	37.037	0.00	0.00	0.00	3.79
709	774	4.978099	TGATAGGAGATTCCCATGCTTTC	58.022	43.478	0.00	0.00	37.19	2.62
728	793	2.260639	ATCTGGGAGGTGTCACTGAT	57.739	50.000	2.35	0.00	39.34	2.90
807	877	4.225042	TGTCACATCCTGGCATTTACTAGT	59.775	41.667	0.00	0.00	25.71	2.57
808	878	4.769688	TGTCACATCCTGGCATTTACTAG	58.230	43.478	0.00	0.00	25.71	2.57
809	879	4.835284	TGTCACATCCTGGCATTTACTA	57.165	40.909	0.00	0.00	25.71	1.82
810	880	3.719268	TGTCACATCCTGGCATTTACT	57.281	42.857	0.00	0.00	25.71	2.24
811	881	3.067180	CCATGTCACATCCTGGCATTTAC	59.933	47.826	0.00	0.00	43.04	2.01
812	882	3.053768	TCCATGTCACATCCTGGCATTTA	60.054	43.478	0.00	0.00	43.04	1.40
912	991	1.469703	CTTTGCGATGCTGGAATGTGA	59.530	47.619	0.00	0.00	0.00	3.58
943	1025	1.933997	CACTTGTGTTGTGTGCGCG	60.934	57.895	0.00	0.00	0.00	6.86
944	1026	2.223549	GCACTTGTGTTGTGTGCGC	61.224	57.895	0.00	0.00	45.62	6.09
945	1027	3.981303	GCACTTGTGTTGTGTGCG	58.019	55.556	0.00	0.00	45.62	5.34
947	1029	1.898938	CTGTGCACTTGTGTTGTGTG	58.101	50.000	19.41	0.00	37.70	3.82
948	1030	0.171007	GCTGTGCACTTGTGTTGTGT	59.829	50.000	19.41	0.00	37.70	3.72
949	1031	0.170784	TGCTGTGCACTTGTGTTGTG	59.829	50.000	19.41	0.00	38.36	3.33
968	1050	6.756542	GTGTTTGATTCTGCCTAAGTTTTGTT	59.243	34.615	0.00	0.00	0.00	2.83
974	1056	4.516698	CACTGTGTTTGATTCTGCCTAAGT	59.483	41.667	0.00	0.00	0.00	2.24
1113	1211	3.390521	CTGGGCTGGTAGGCGTGA	61.391	66.667	0.00	0.00	42.43	4.35
1201	1316	1.883084	CGGACAGTATGAAGGCCGC	60.883	63.158	0.00	0.00	39.69	6.53
1221	1336	0.729478	CGTTCTTGAAGCGCTCTCGA	60.729	55.000	12.06	9.74	38.10	4.04
1356	1481	7.278875	GGTGTACTAGTACTACCTAGACATGT	58.721	42.308	28.84	0.00	38.24	3.21
1486	1615	2.706339	ATCCCAGCATGACTTCAGAC	57.294	50.000	0.00	0.00	39.69	3.51
1506	1639	6.996879	CCACTTAGATGGAAGATCATGTTCAT	59.003	38.462	6.55	0.00	43.02	2.57
1652	1793	9.612620	AAACAAGATGAAATGTTTCGAACTATC	57.387	29.630	0.00	0.00	44.16	2.08
1721	1877	0.324943	CATCCGGACCAGTGGAGTTT	59.675	55.000	18.40	0.00	37.76	2.66
1730	1886	1.899437	GAGGTGCTTCATCCGGACCA	61.899	60.000	6.12	0.00	44.36	4.02
1734	1890	2.918712	ATAAGAGGTGCTTCATCCGG	57.081	50.000	0.00	0.00	38.05	5.14
1735	1891	4.209288	CGTAAATAAGAGGTGCTTCATCCG	59.791	45.833	0.00	0.00	38.05	4.18
1780	1936	6.767524	TCGATTTACCATGCCTAAAACATT	57.232	33.333	0.00	0.00	0.00	2.71
1781	1937	6.767524	TTCGATTTACCATGCCTAAAACAT	57.232	33.333	0.00	0.00	0.00	2.71
1782	1938	6.576662	TTTCGATTTACCATGCCTAAAACA	57.423	33.333	0.00	0.00	0.00	2.83
1813	1978	4.097892	CCCTCTACCAACATAAATTGCCAC	59.902	45.833	0.00	0.00	0.00	5.01
1832	1997	4.202567	TGCCAACTATATTTCCCATCCCTC	60.203	45.833	0.00	0.00	0.00	4.30
1854	2019	1.942586	GCCAGGAAATTGCCTTGCTTG	60.943	52.381	19.41	1.67	41.97	4.01
1860	2025	2.014010	TCTTTGCCAGGAAATTGCCT	57.986	45.000	0.00	0.00	39.37	4.75
1891	2056	2.025156	CGAGCATGGCAAATCCGC	59.975	61.111	0.00	0.00	37.80	5.54
1912	2077	0.321298	TCGAGGGTGGCAAGTTTAGC	60.321	55.000	0.00	0.00	0.00	3.09
1957	2123	3.502191	TTTTAGGCATGCCAAATCGAC	57.498	42.857	37.18	8.91	38.92	4.20
1958	2124	4.402155	AGATTTTTAGGCATGCCAAATCGA	59.598	37.500	33.46	22.46	39.23	3.59
2071	2240	1.562008	TGGAGTAAAATCCGCCATCCA	59.438	47.619	0.00	0.00	42.77	3.41
2075	2244	4.286032	AGCTATATGGAGTAAAATCCGCCA	59.714	41.667	0.00	0.00	42.77	5.69
2089	2258	2.102420	TCACCGGTGACAAGCTATATGG	59.898	50.000	33.23	2.47	34.14	2.74
2147	2316	4.658063	TCACCGGTGACATATTCCTTTTT	58.342	39.130	33.23	0.00	34.14	1.94
2195	2364	7.094506	ACCGGTGACATATTCCTTTTCTTAAAC	60.095	37.037	6.12	0.00	0.00	2.01
2199	2368	4.700213	CACCGGTGACATATTCCTTTTCTT	59.300	41.667	31.31	0.00	0.00	2.52
2200	2369	4.019681	TCACCGGTGACATATTCCTTTTCT	60.020	41.667	33.23	0.00	34.14	2.52
2201	2370	4.258543	TCACCGGTGACATATTCCTTTTC	58.741	43.478	33.23	0.00	34.14	2.29
2207	2378	7.730364	ATAAATCTTCACCGGTGACATATTC	57.270	36.000	36.40	0.00	39.66	1.75
2215	2386	4.430007	TCTCGAATAAATCTTCACCGGTG	58.570	43.478	29.26	29.26	0.00	4.94
2216	2387	4.730949	TCTCGAATAAATCTTCACCGGT	57.269	40.909	0.00	0.00	0.00	5.28
2225	2396	9.887406	TGTAAAACTTGGTTTCTCGAATAAATC	57.113	29.630	0.00	0.00	34.43	2.17
2229	2400	6.072893	GGCTGTAAAACTTGGTTTCTCGAATA	60.073	38.462	0.00	0.00	34.43	1.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.