>input_sequence_85715
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----------------------------------------------ATGGAGGGAACCATGAAGAGCGGCGCCAGGGGGA
TCAAAGGGAAAGTGGCTATGGTGTACTCCAAGTACGCCGGCAAAGGGCAGGCCAAG--------CCTGCGCCGAG---CG
TCACTACGGCTCACGCCTACCAGCCC-----------------AGGTATCCTTCTTCCATCGACGCGAGGGCGAGCGCCC
CCTATGCCGCCGCCGGTGACGTCGACGAGAGGGCCGCGGCCTTCATACTGTCCGTTCGAGAGCGCTTCAAGAACGAGCAG
AAGATGATGAGCTAG-----------------------------------------------------------------
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-------------------------------
>chr3A_1_TraesCS3A01G432600
CATGAAGGTGGGTGTGGCGAATGTGCTCCCACAACATGACAAAGTGCCTAAGGTGCTCCATGGTGAGGATCAT----ATT
GAGCTTAATCTTGTGAATCCAAGCGTCATCCGTCAAGGCCTCC------TTAACTTTCCAATTGTTT-GCGAGGAGGAAA
AGTATATGGGCGGGGTAATGTCCTTCGGTTTCTTGCCATTGAGCCATGGGGAATCCCAAAAAGGGGCAATGGCACCATTG
CTAATAGATACGATGGTA-AGGCATAGAAGAGGTCCAGGTCCACCATGTCACAGGGGTTCCCCAAACTCACCCAAATCTT
TGCCGAAACCTTCCACTCATACCAAAGCCAACGTAACCG-CAATGCCCGAGCAAACCTATCAAGGTTGAGTACACCAAAT
TTCCAAAATGCTTTGGCCGACATATGGTTGCCCAATTAACCTTGCACTTGGCTCCGGTCATCTTGTCCGTTCCCGCCCA-
--------------AAGGGATAGGGAGGAATTAGGAATCTGCCGAGGATAATACATTTGGATATCCCAAGGGATGATCTT
TTTT-TTTCTGATCTGGAAAGGGCGAGAGAGAGGCAAAGAACCTTGGCAAGCATGTGA----GCATACATGGATTTTTAT
----CACAGGACCAACCGTATATTATCATGGCCCAC-----------TAGATACAATCATGCAGACCAC-AAACAAGATT
CACT----------ACATCTCTTCGTGTC-----ACTTACCACTGGACCCTCCGAAAGCATGGGAATCTCCTATCAGTGA
CACCTCCCAGATTCACTTTGCCAGAGCTACATTTCGTTGGGTGCACGCATGTTCATTATCCAC-----TGGCATCTACTA
GTAAATGCCAGGATGTGACATGGAATGTCTAT------GGCCTTCCTAGCTAGTAGCTACCACTTGG--TCATTCGAGTA
TAAAA-GAGGGTAGCTACCTCTTCGGCATTT--CACATTCCAGCATCGCAAAGCAA-GGCGCACCGCGCACACAACACAA
GTGCACAGCAACAAAACTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAGCGGCGCCAGGGGGA
TCAAAGGGAAAGTGGCTATGGTGTACTCCAAGTACGCCGGCAAAGGGCAGGCCAAG--------CCTGCGCCGAG---CG
TCACTACGGCTCACGCCTACCAGCCC-----------------AGGTATCCTTCTTCCATCGACGCGAGGGCGAGCGCCC
CCTATGCCGCCGCCGGTGACGTCGACGAGAGGGCCGCGGCCTTCATACTGTCCGTTCGAGAGCGCTTCAAGAACGAGCAG
AAGATGATGAGCTAGTTGAGCTCCGTCGTGGC---CGGTCAG-----TCCAGGCTCGAGGAGAGGTTATATATTTG--AT
GGAAACATCTTCTATGTAGCCATGGATACATACAGTATATACATGTCT--AGGTAGTACTAGTACACCGTGTACTAGT--
TTTTCTGTTCTCTCTCTTTTTTGTGAACTTCAGTTTGACCATAAGAGTGTGGAAGTAGGGATGGTAATATAAAGGGACCT
AATATAAATCCCATGTCTGAAGT----CATGCTGGGATATGA--ACATGATCTTCCATCTAAGTGGAGTTTGTGAGATCT
CCACCGTTCATTCTTGTTTTGGTCCGACAC-TCATCTCGACTCTG---AGAATTTTTAAATTTCAGTTCCTT-TTT-AGA
TGTGGAGAACCTCTTTACAAGTGCTGTTTCAAGATAGT---------------TCGAAACATTTCATCTTGTTTTTGCTT
GAAACTGTAAAAATAAATAATCGTCATGTTACCATCAAACTCCACTGGTCCGGATGAAGCACCTCTTATTTACGGAAATG
CTAAAAATCTGACGTAAT---------GTTTTAGGCATGGTAAATCGAAAAAAAATCGTGGCAATTTATGTTGGTAGAGG
GATGGGAAATATAGTTGGCAAGCAAGGCAATTTCCTGGCAAAGAAATGAACTTAGGCGGATTTGCCATGCTCGCCAGCTA
AACTTGCCACCCTCGACAAACATAATTTGCCATGAAA-AAAAGTCGATTTGGCATGCCTAAAAAT-CTGACTTTCGTTGG
ATATTTGGGTCCCTTGTTTAACC--ATGATCAAATTTATAGGGTTTTCCTCGTAAATGTTACTGGATATTTTGTTTCGAT
GGATGGCGGATTTTACTCCATATAGCTTGTCACCGGTGAAGATTCATTTAGCTGAGTTATCTTTTTTTATTTTAAAAAAA
GGAATATGTCACCGGTGAAGATTTATTTAGCTGAGTCATCTTTGTTTAAGA--AAAGGAATATGTCACCGGTGAAGATTT
ATTCGAGAAACCAAGTTTTACAGCCAAAACA
>chr3D_1
CATGGAGGTGGGTGTGGCGAATGTGCTCCCAGAACGGGACAAATTGCCTAAGGTGCTCCATGGTGAGAATCAT----A--
--GCTTAATCTTGTGAATCCAAGCATCACCCGTCAAGGCCTCCTTTTTTTTTACTTTCCAATTTTTCCGCGAGGAGGAAA
AGTATATGAGCTGGGTAATGTCCTTCGGTTTCTTGCCATTGAGCCAAGGGGAAACCCAAAAAGGGGCAATGGCACCACTG
CCAATAGATGCGATGATAGAGGCATAGAAGAGGTCGAGGTCCACCTTGTCACAGGGGTTCCCCGAACTCACCCAAATCAT
TCCGGGAACCTTCCACTCATACCAAAGCCAACGTAACCG-CAATGCCCGAGCAAACCTATCGAGGTTGAGTACTCCGAAT
CACCAAGATGCTTTGGCCGACACACGGTAGCCCAATTAACCTTGCACTTGGCTCCGGTCATCTTGTCCGTTCCCGCCCAA
AGGGTATGATTCACAAGGGATAGGGAGGAATCAGGAATCTGCCGAGGATAATACATTTGGATATCCGAAGGGATGATC--
TTTT-TTTCTGATCTGGAAAGGGCGAGCGAAAGGCAATGAACCTTGGCAAGCATGTGCGCGTGCATACATGGATTTTTAT
----CACAGGACCAACCGTATATTATCATGGCCCAC-----------TAGATACAATCATGCAGACCAC-AAACCAGATT
CACT----------ACATCTCTTGGTGTC-----ACTTACCACTGGACCCTCCCAAAGCATGAGAATCTCCTGTCAGTGA
CACCTCCCAGATTCACTTTGCCAGAGCTGCATCCCGTTAGGTGCACGCATGTTCATTATCCAC-----TGGCATCG----
--AAATGCCAGGATGTGACATGGAATGTCTAT------GGCCTTCCTA-------GCTACCACTTGG--TCGTTCCAGTA
TAAAA-GAGGGT-------TCTTCGGCATTC--CACATTCCAGCATCGCAAAACAA-GGCGCAC-------ACAACACAA
GTGCACGG-CACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAGCGGCGCCAGGGGGA
TCAAAGGGAAAGTGGCTATGGTGTACTCCAAGTACGCCGGCAAAGGGCAGGCCAAG--------CCTGCGCCGAG---CG
TCACTACGGCGCACGCCTACCAGCCC-----------------AGGTATCCTTCTTCCATCGACGCGAGGGCGACCGCCC
CCTATGCCGCCGCCGGTGATGTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAG
AAGATGATGAGCTAGTTGAGCTCCGTCGTG-C---CGGTCAG-----TCCACGCTCGAGGAGAGGTTACATATTTG--AT
GGAAACATCTTCTATGTAGCCATGGATACATACAGTATA--CATGTCT--AGGTAGTAGGAGTACACCGTGTACTTCT--
TTTTCTGTTCTCTCTCTTTTTTGTGAACTTCAGTTTGACCATCAGAGTGCGGAAGTAGGCAGGATAATATAAAGGGACCA
AATATAAATCTCATTTCTGAAGT----CATGCTGGGATGTGA--ATATGATCTTCCATCTAAGTGGAGTTTGTGAGATCT
CCACCGTTCATTCTTGTTTTGGTCCAACAC-CCATCTCGACTCTG---AGAATTTTTAAATTTCAGTTCCTT--------
-GTGGAGAACGTCTTCACAAGTGCCATTTCAAAACAGT---------------TCCAAACATTTCATCTTGTTTTTGCTT
GAAACTGTAAAAATAAATAATCATCATGTTACCATCCAACTCCACCGGTTTGGATGAAGCACCACTTATTTACCGAAATG
CTAAAAATCTGACA--------TCAGATTTTTAGGCATGA-AAAT---AAAAAAATCATGGCAATTTATGTAC-----GG
GATGGGAAATATAGTTGGTAAGCACGGCAATTTTCTGGCAAAGAAATGAACTGAGATGGATTTGTCATAGTCGCCAACTA
AACTTGCCACCCTCAACAAACATAATTTGCCATGAAAAAAAAAACGATTTGGCATGCCTAAAAAAACTGACTTTCGTTGG
ATAGTTGGGTCCCTTATTTAACAAAATAATCAAAGTTATAGGGGTTTCCTCGTAAATGATACTGGATATTTTGTTTCAAC
GAAGGGCGTATTTTACTACATATAGCTTGTCACCGGTGAAGATTTATTTAGCTGAGTCAAC--TTTTTATTTTAAGAAAA
AGAATATGTCACCGGTGAAGATTTATTTAGCTGAGTTATCTTTATTTTTTAAGAAAGCAATATGTAGCCGGTGAAAATTA
ATTCGAGAAACCAAGTTTTACAGCCAAAACA
>chr3B_1
CATGGAGGTGGGTGTGGCGAATGTGCTCCTACTACGTGACAAATTGCCTAAGGTGCTCCATGGTGAGAATCTTATTGA--
--GCTTAATCTTGTGAATGCAAGCGTCATCCGTCAAGGCCTCC------TTAACTTTCCAATTTTTCCGCGAGGAGGAAA
AGTATATGAGCGGGGTAAAGTCCTTCGGTTTCTTGCCATTGAGCCAAAGGGAACCCCCAAAAGGGGCAATGGCACCATTG
CCAATAGAAAAGATGGTAGATGCACGGAGGAGGTTGAGGTCCACCTTGTCACAGGGGTTCCCCGAACTCACCCAAATATT
TCCTGGAACCTTCCACTCATACCAAAGTCAATGTAACCCTCAATGCCCAAGCAAACCTACCGAGGTTGAGTACACCAAAT
CCCCTAGATGCTTTGGCCGACACACGGTAGCCCAATTAACCTTGCACTTGGCTCCGGTCATCTTGTCTGCTCCCGTCCAA
AAGGTATGATTCACAAGGGATAGGGAGGAATCAGGAATCTGCCGAGGATAATACATTTGGATATCCAAAGGGATGATC--
TTTTTTTTCTGATCTGGAAAGGGCGAGAGAGAGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATACATGGATTTTTAT
----CACAGTACCAACCGTATATTATCATGGCCCAC-----------TAGATACAATCATGCAAACCAC-AAACCAGATT
CACT----------ACATCTCTTCGTGTC-----GCTTACCACTGGACCCTCCCAAAGCATGAGAATCTCCTGTCAGTGA
CACGTCCCAGATTCACTTTGCCAGAGCTGCATCCCGTTAGGTGCACGCATGTTCATTATCCAC-----TGGCACCG----
--AAAGGCCAGAATGTTACATGGAATGTCTAT------GGCCTTCCTA-------GCTACCACTTGG--TCATTCTAGTA
TAAAA-GAGGGTAGCTACCTCTTCGGCATTCCACACATTCCAGCATCGCAAAGCAA-GGCGCAC-------ACAACACAA
GTGCACAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAGCGGCACCAGGGGGA
TCAAAGGGAAAGTGGCTATGGTGTATTCCAAGTACACCGGGAAAGGGCAGGCCAAG--------CCTGCACCGAG---CG
TCACTACGGCGCACGCCTATCAGCCC-----------------AGGTATCCTTCTTCCATCGACGCGAGGGCAAGCGCCG
CCTATGCCGCCACCGGTGACGTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAACAACGAGCAG
AAGATGATGAGCTAGTTGAGCTCCGTCGTGGC---CGGTCAG-----TCCAGGCTTCAGGAGAGATTACATATTTG--AT
GGAAGCATCTTCTATGCAGCCATGGATACATACAGTATA--CATGTCT--AGGTAGTAGTAGTACACCGTGTACTTCT--
TTTTCTGTTCTCTCTCTTTTTTGTGAACTTCAGTTTGACCATAAGAGTGTGGAAGTAGGGATGATAATATAAAGGGACCT
AATATAAATCTCATTTCTGAAGT----CATGCTGGGATGTGA--ATACGATCTTCCATCTAAGTGGAGTTTGTGAGATCT
CCACCGTTCATTCTTGTTTTGGTCCAACAC-TCATCTTGACC--G---AGAATTTTTAAATTGCAGTTCCTT-TTTTGGA
TGTGGAGAACCTCTCTACAAGTGTCGTTTCAAAATAGT---------------TGGAAACATTTCATCTTGTGTTTGCTT
GAAACTGTAAAAATAAATAATCGTCATGTTACAATCCAACTCCACCGGTTTAGATGAAGCACCTCTTATTTACGGAAATG
CTAAAAATCTGACGTCGGATACTCAGAGTTTTAGGCATGGCAAAT---AAAAAAATATTGGCAATTTATGTTGGTATAGG
GATGGGAAATTTAGTCGGGAACAATGGTAATTTCCTGGCAAAGAAATAAACTGAAACTGATTTGCCTTGCTCGCCAACTT
AATTTGCCATCCTCGACAAACATAATTTGCC-------AAAAAAAGATTCGGCATGCCTAAAAAT-CTGACTTCCGTTGG
ATATCCGGGTCCCTTATTTAACC--ATAATCAAATTTACAGGGTTTTCCTCATAAATGTCACTGGATATTTTGTTTAGGC
GGAGGGTGGATTTCACTACATATAGCTTGTCACCGATGAAGATTTATTTAGCTGAGTCATCTTTTTCTTTTTGAAGAAAA
GGAATACGTC----------------------------------------------------------------------
-------------------------------
>chr3A_513
--------------------------------------------------------------------------------
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------------------------------------------------------------ATATCCGAAGCGACGATC--
TTCTCTTTGTGATCTGAAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATACGTGTATTTTTGT
----CACAAGACCAACCGTATATTATCTTGGTGCACTGCTAGTCTGCTAGAAGCAATCATACAGACCACAAACCAGCTTA
GGTTTCGTTGGGTGACACCTCCTCGTGCCACTTTACTTAGCACTGGACCCTCCCAAAGCACGGGAATCTCTTGTCAGTGA
CACCTCCCAGATCCACTTTGCCAGAGCTACATTTCCTTGGGTGCACGCATGTTCATTATCCTATCCTATGGCATCA----
--CAAAGCCAAGAAGTGACATGGAATGGAATACTCTTCAGTCTGTCTG-------CCTATCTCACGC--ACTAACCAGTA
TAAATGGGG-T-AGCTACCCC-------TTC--GTCATTCCAGCGTCGCAAAGCAAAGGCACAC-------ACAACACAA
GTGCTTAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGCCAGGGCGA
TCAAGGGGAAGGTGGCGATGGCCTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAG--------CCTGCCCCTAG---CG
TCACTACAGCACACGCCTACCAGCCC-----------------AGGTACCCTTCTTCCATCGACGCCACCGTGAGCGCCC
CCTACGCCGCCGCCGGTGATGTCGACGAGAGGGTCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACAAGCAG
AAGATGATGAGTTAGTTGAGCTCCATCATGGC---CGGTCAGGTCAGTCCAGGCTCCGGGAGAGGTTTTATATTTG--AT
GG-AACATCTTCTGGGTAGCCATGGATACATACA---TG----TGTCT--AAGT------GGTATACCATGTACTTTT--
CCCT--TTTCC--CCCTCCTTTTGCAACTTCACTTTGTCCATAAGAGTGGGAAGAATGGGATAA---------------T
AACATAATCCCCATTTCTGAAAA----TATGCTCGGATGTCA--ATATGATCCTTCATCAAAGTTGAGTTTGTGTGTTGT
TCA-------TTTTTGTT---GCCCGACAGTTCATCTCGACTGTGTAAAGGATCTTAAAATTTCAGTTCATT-TTT-GGA
TGTCGAAAACTCCTTTACAAGTGGCGTAACAAAATAGTAA---AAAAATCATTTACAAACATTCCATCTTGTTTTTGCTT
GAAACTGTAAAAATAAGCAATCGTCTGGTTCCCATCCAACTCCACCGTTT-GGAGGAAGCACCATACTTA----------
--------------------------------------------------------------------------------
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-------------------------------
>chr3A_513
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------------------------------------------------------------ATATCCGAAGCGACGATC--
TTCTCTTTCTGATCTGGAAAGGCCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTGGTGCGTACGTGTATTTTTGT
----CACAAGACCAACTGTTCATTATCATGGTGCACTGCTAGTCTGCTAGATGCAATCATACAGACCAC-AACCAGCTTA
GGTTTCGTTGGGTGACACCTCCTCGTGTC-----ACTTACCACTGGACCCTCCCGAAGCATGAGAATCTCCAGTCAGTGA
CACCTCCCAGATTCGCTTTGGCAGAGCTACGTTTCGTTGGGTGCACGCATGTTCATTATCCTATCCTATGGCATCA----
--AA---------------------------------------------------CCTATCTCACGC--ACCAACCAGTA
TAAAA--GG-C-AGCTGCCTC-------TTC--GTCATTCCAGCATCGCAAAGCAAAGGCACAC-------ACAACACAA
GTGCTTAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGCCAGGGCGA
TCAAAGGCAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAG--------CCTGCCCTGAG---C-
--ACTACAGCACACGCCTACCAGCCA-----------------AGGTACCCTTTTTCCATTGACGCCACCGCGAGCGCCC
CCTACGCCGCGGCTGATGATGTCGACGAGAGGGCCTCGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAG
ACGATGATGAGTTAGATGAGCTCCGTCGTGGC---CCGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--AT
GG-AACATCTTCTGGGTAGCCATGGATATATACA---TA--CATGTCTCTAAGT------GGCACACCATGTACTTTTCC
TTTT--TTTCC--CTCTCCTTTTGTAACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGATGA---------------T
AACATAATCCCCATTTCCGAAAAAAAAAACGCTGGGATGTGA--ATACGATCCTTCATCAAAGTGAAGTTTGTGTGCCGT
TCA-------TTGTTGTTG--GCCCCACAGTTCATCTCGACCGTGTAAAGAATCTTAAATTTCAA--TTCCT-TTT-TTA
TGTCGCGAACTCCTTTCCATGTGCCGTATCAAAATAGTACTAC--AAATCATTTCGAAATATTCCATCTTATTTTTGCTT
GAAACTGTAAAAATAAGCAATCTTCTGGTTCCCATCCAACGCCACCGTTT-GGATGAAGCACCTTAATTTA---------
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-------------------------------
>chr3D_513
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------------------------------------------------------------ATATCCGAAGGGACGATC--
TTTTCTTTCTGATCTGGAAAGGGCGAGGGGGAGGCAAAGAACCTTGTCAAGCATGTGCTCGTGCAACGTGTTGTATCACA
CAAACACAACACCTACCGTATATTACCATGGCGCAC-----------AAGATACAATCATACAGACCTCAAAGCAGCCTA
GGTTTCGTTGGGTGACACCTCC-------------------------------CAAAGCACGGGAATCTCCTGCCAGTGA
CACCTCCCAGATCCACTTTGCCAGAGCAACATTTCGTTGGGTGCACGCATGTTCATTATCCTATCCTATGGCATCA----
--AAATGCCAAGACGTGACATGGAATGGAATAGTCTTCAGTCTGTCCA-------CCTATCGCACGC--AGCAACCACTA
TAAAA-GGG-C-AGCTACCCC-------TTC--GTCATTCCAGCATCGCAAAGCAAAGGCACAC-------ACAACACAA
GTGCGCAGCCACAAAGCTTAGGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGCCAGGGTGA
TCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAG--------CCTGCCCCGAG---CG
TCACCACCACACGCGCCTACCAGCCC-----------------AGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCC
CCTGCACCGCGGCCGGTGATGTCGACGAGAGGGCCACGGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAG
ACGATGATGAGTTAGATGAGCTCCGTCGTGGC---CGGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--AT
GG-AACATCTTCTAGGTAGCCATGGATATATACA---TA--CATGTCTCTACGT------GGCACACCATGTCCTTTTCC
TTTT--TTTTC--CTCTCCTTTTGTAACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGATGA---------------T
AACATAATCCCCATTTC------------CGCTGGGATGTGA--ATACGATCCTTCATCAAAGTGGAGTTTGTGTGCCGT
TCA-------TTTTTGTTG--GCCCCACAGTTCATCTCGACCGTGTAAAGAATCTTAAATTTCAA--TTCCT-TTT-TTA
TGTCGAGAACTCCTTTCCATGTGCCGTATCAAAATAGTA---C--AAATCATTTCGAAACATTCCATCTTATTTTTGCTT
GAAACTGTAAAAATAAGCAATCTTCTGGTTCCCATCCAACGCCACCGTTT-GGATGAAGCACCTTAATTTA---------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_513
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------------------------------------------------------------ATATCCGAACCGACGATC--
TTCTCTTTGTGATCTGGAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATACGTGTATTTTTGT
----CATAAGACCAACCGTATATTATCATGGTGCACTGCTAGTCTGCTAGATGCAATCATACAGACCACAAACCAGCTTA
GGTTTCGTTGGGTGACACCTCCTCGTGCC-----ACTTTGCACTGGACCCTCCCAAAGCACGGGAATCTCTTGTCAGTGA
CACCTCCCAGATCCACTTTGCCAGAGCTATGTTTCGTTGGGTGCACGCATGTTCATTATCCTATCCCATGGCATCA----
--AAACGCCAAGAAGTGACATGGAATGGAATACTCTTCAGTCTGTCGG-------CCTATCTCACGCGCACTACCTAGTA
TAAATGGGG-T-AGCTACCGC-------TTC--GTCATTCCAGCATCGCAAAGCAAAGGCACAC-------ACAACACAA
GTGCGCAGCCACAAAGCTTAAGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGCCAGGGTGA
TCAAGGGGAAGGTGGCGATGGCGTACTCCAAGTACGCCGGCAAGGCCCAGGTCAAG--------CCTGCCCCGAGTGTC-
--ACTACCGCACGCGCCTACCAGCCC-----------------AGGTACCCTTCTTCCATCGACGCCACCGCGAGCGCCC
CCTACGCCGCGGCCGGTGATGTCGACGAGAGGGCTACGGCGTTCATACTGTCCGTCCGAAAGCACTTCAAGAACGAGCAG
ACGATGATGAGTTAGATGAGCTCCGTCGTGGC---CGGTCAGGTCGGTCCAGGCTCCGGGAGAGGTTTTATATTTG--AT
GG-AACATCTTCTGGGTAGCCATGGATATATACA---TAT--ATGTGTCTAAAT------GGTACACCATGTGCTTTTCC
TCTT--TTTTTTTCTCTCCTTTTGTAACTTCAGTTTGACCATAAGAGTGGGAAGACAGGGAAGA---------------T
AACATAATCCCCATTTCTGTAAA----AATGCTGCGATGTGAATATATGATCCTTCATCAAAGTGGAGTTTGTGTGCCGT
TCA-------TTTTAGTTT--GCCCGACAGTTCATCTCGACCGTATAAAGGTTCTTAAAATTTCAGTTCCTAATTT-GGA
TGTTGAGAACTCCTTTACAAGTGCCGTATCAAAATACAGTAACAAAAATCATTTCGAAACATTACATCTTGTTTTTGCTT
GAAACTGTAAAAATAAGCAATCGTCTGGTTCCCATCCAACCCCACCGTTT-GGATGAAGCACCT----------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3B_513
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------ATATCCGAAGCGACGATC--
TTCTCTCTCTGATCTGGAAAGGGCGAGAGGGCGGCAAAGAACCTTGGCAAGCATGTGCTCGTGCATA-------------
----------------CGTATATTATCATGGTGCACTGCTAGTCTGCTAGATGCAATCATACAGACCACAAACCAGCTTA
GGTTTCGTTGGGTGACACCTCCTCGTGCC-----ACTTTGCACTGGACTCTCCCACAGCACGGGAATCTCTTGTCAGTGA
CACCTCCCAGGTCCACTTTGCCGGAGCTAAGTTTCGTCGA-TGCACGCGTGTTCATTATCCAT-----TGGCATCT----
---AAAGCCAAGATGTGAAATGGAATGGAATAGTCTTCGGTCTGTCTA-------CCTATCTCACGC--ACAAACCAGTA
TAAAA-GGGGT-AGCCACCTC-------TCC--GGCGTTCCAGCATCGCAAAGCAAAGGCAGAC-------ACAACACAA
GTGCGTAGCCACAAAGCTTAAGCAGAATCAAACACAGTGC-----AATGGAGGGAACCATGAAGAACGGCGCCAGGGTGA
TCAAGGGGAAGGTGGCGATGGTGTACTCCAAGTACGCCGGCAAGGCCCAGGTTAAG--------CCTGCCCCGAGCGTC-
--ACTACAGCACGCGCCTACCAGCCC-----------------AGGTACCCTTCTTCCATCGACGCCACTGCGAGCGCCC
CCAACGCCGCGGCCGGTGATGTCGACGAGAGGGCCACCGCGTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAG
ACGATGATGAGTTAGATGAGCTCCGTCGTGGC---CGGTCAGGTCGGTCCAGGCTCCGGAAGAGGTTTTATATTTG--AT
GG-AACATCTTCTGGGTAGCCATGGATGTATACA---TA--CACGTGTCTAAGT------GGTACACCATGTACTTTTCC
TTC---TTTCTTTCTCTCCTTTTGTAACTTCAGTTTGACCATAAGAGTGGGAAGAATGGGATGA---------------T
AACATA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr3D_880
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGTA
TAAAA-GGGCA-AGCTACCTC-------TTC--GTCATTCCAGCATCGGAAAGCAAAGGCACAC-------ACAGCACAA
GTGCACAACCACAAAGCTTAGGTAGAATCAAACACGGTGAAACCAAATGGAGGGAACCATGAAGAGTGGCGCCAGGGGGG
TCAAGGGGAAGGTGGCGATGGTGTACTCCAAGTACGCCGGCAAGGCCCAGGCCAAG--------CCTGCCCCGAG---CG
TCACTGCCGCACACGCCTACCAGCCC-----------------AGGTACCCTTCTGCCATTGACGCGACGGCGAGCGCCG
CCTATGCCGCCACCGGTGACGTCGACGAGAGGGCCACGGCCTTCATACTGTCCGTCCGAGAGCGCTTCAAGAACGAGCAG
AAGATGGTGATTTAGCTGAGCTCGGTTGAGGTCGGCCGGCCGGTTGGTCCAGGCTACAGGAGAGATTTTATATTTAAAAT
GG-AACATCTTCGTGGTAGCCATGGATACATAGT---TG----TGTCT--AGGT------GGTACACCATGTACCTTT--
TCTT--TTCTTTTCTCTCTTTTGTGGACTTCAGTTTGACCATAAGAGTGG-AAGAAAGGGGTGA---------------T
AATATAAATCCCATTTCTGAGAC----C--------ATGTGA--TTATGATCCTCAATCAGAATGGAGTTTGTGTCATCT
CCACTGTTCATTCTTGTTC--GTCCAACACTCCATCTCGTCGGTGTAAAGAAATTTAAAATTGCAGTTCCTT-TTA-TGA
TGTTGGGAACCTCTTTACAAGTGCCGTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>chr3A_983
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AGAACCAAACACAGTGAAACCAAATGGAGGGAACCATGAAGAGCGGCGCCAGGGTGA
TCAAGGGGAGGGTGGCGATGGTATACTCCAAGTACGCCGGCAAGGCCCAGGCCAAGGCGCCAAGCCTGCCCCGAG---CG
TCAGTACCGCATACCCCTACCAGCCCAGGTACCCAAAAAAAAAAGGTACCCTTCTTCCATCGACGCGACGGCGAGCGCCC
TCTGTGCCGCCACCGGTGACGTCGACGAGAGGGCCACGACCTTCATACTGTCCGTCCGAGAGCGCTCCAAGAACGAGCAG
AAGATGGTGATTTAGCTGAGCTCGGTCGAGGTCGGCCGG----TTGGTCCAGGCTCCAGGAGAAATTTTATATTTAAAGT
GG-AACATCTTTTGGGTAGCCATGGATAGATAGT---TG----TGTCT--AGGTGGTACAGGTACACCATGTACCTTTTC
TTTTCTTTTCTCTCTTTCTTTTGTGGACTTCAGTTTGACAATAAGGGTGG-AAGAAAGGGATGA---------------C
AATATAAATCCCATTTCCGAGAC----CATGTTGGGATGTGA--ATATGATCCTTAATCAGAATGGAGTCTGTGTGATCT
CCACTGTTCATTCTTGTTC--GTCCAACACGCCATCTCGATCGTGTAAAGAAATTTAAAATCGCAGTTTCTT-TTA-TGA
TGTCGAGAACTTCTTTACAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>SNPs
----S------------------------------S-------S-----------------------S----------SS
SS-------------------------------------------------------------S--S-------------
--------S-------------------------------------S------S--------------------------
-S---------------------------------S---------S-----------------S----------------
-S-S-S-------------------------------------------------------S------------------
SS----S---------------S-S---S---------------------------------------------------
-------------------------------S----------------------------------S-----------SS
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S------------------S-------
----------------------------------------------------------------------------SSSS
SS----------------------------------------------SSSSSSS--------------------S----
------------------------------S---------------------------------SSSSSSS---------
---------S-----S----------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------S-------------------S------------------------
--------------------------------------------------------------------------------
----------------------------------------S----------------------------------SS---
---------------------------------------------------------------S----------------
--------------S-----------------------S------S----------------------------------
-----------------------------------------------------------------------------S--
------------------------S-------S-----------------------------------------------
------------------------------------S--------S---SS-----------------------------
---------------SSS----------------------S----SSS---------S------------------S---
------------------S-----S---------------------------S--S--------------------S---
------------------------------------------SS------------------------------------
---------------S-----------S---------------------------------------------------S
---S-------------S--------------------------S------------S-----------------S----
------------------------------------S------S---SSS-------S-------SS--------S---S
-------------------------------
>forward_1050
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------CACAACACAA
GTGCACAGCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------
>reverse_2077
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GCTA
AACTTGCCACCCTCGA----------------------------------------------------------------
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-------------------------------
