Multiple sequence alignment - TraesCS3A01G429900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G429900 chr3A 100.000 3378 0 0 1 3378 672871024 672867647 0.000000e+00 6239
1 TraesCS3A01G429900 chr3A 89.524 105 4 2 263 367 673192421 673192324 3.540000e-25 126
2 TraesCS3A01G429900 chr3B 87.927 2725 186 66 268 2894 711642484 711639805 0.000000e+00 3077
3 TraesCS3A01G429900 chr3B 87.860 1598 126 33 750 2331 711885092 711883547 0.000000e+00 1814
4 TraesCS3A01G429900 chr3B 85.841 339 12 15 3053 3374 711639808 711639489 9.040000e-86 327
5 TraesCS3A01G429900 chr3B 80.909 440 34 19 38 452 711946496 711946082 5.480000e-78 302
6 TraesCS3A01G429900 chr3B 100.000 150 0 0 2896 3045 532665589 532665738 9.230000e-71 278
7 TraesCS3A01G429900 chr3B 86.758 219 10 4 38 249 711644847 711644641 3.390000e-55 226
8 TraesCS3A01G429900 chr3B 90.909 77 5 2 619 695 712186070 712185996 5.960000e-18 102
9 TraesCS3A01G429900 chr3D 91.810 1978 112 31 945 2894 537558332 537556377 0.000000e+00 2710
10 TraesCS3A01G429900 chr3D 85.525 981 55 31 38 957 537559298 537558344 0.000000e+00 944
11 TraesCS3A01G429900 chr3D 99.333 150 1 0 2896 3045 432025658 432025807 4.290000e-69 272
12 TraesCS3A01G429900 chr3D 82.432 296 14 14 3053 3332 537556380 537556107 1.220000e-54 224
13 TraesCS3A01G429900 chr3D 77.256 277 21 17 266 517 537680828 537680569 1.270000e-24 124
14 TraesCS3A01G429900 chr4D 100.000 150 0 0 2896 3045 365183965 365184114 9.230000e-71 278
15 TraesCS3A01G429900 chr4B 100.000 150 0 0 2896 3045 48101536 48101685 9.230000e-71 278
16 TraesCS3A01G429900 chr2D 100.000 150 0 0 2896 3045 21932608 21932757 9.230000e-71 278
17 TraesCS3A01G429900 chr2D 100.000 150 0 0 2896 3045 618082773 618082922 9.230000e-71 278
18 TraesCS3A01G429900 chr2D 81.395 301 52 4 1633 1931 353350947 353351245 3.370000e-60 243
19 TraesCS3A01G429900 chr6D 99.333 150 1 0 2896 3045 429468451 429468302 4.290000e-69 272
20 TraesCS3A01G429900 chr7D 96.296 162 6 0 2885 3046 201160580 201160741 2.000000e-67 267
21 TraesCS3A01G429900 chr6B 98.013 151 3 0 2896 3046 459061555 459061705 2.580000e-66 263
22 TraesCS3A01G429900 chr2A 81.395 301 52 4 1633 1931 471817111 471817409 3.370000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G429900 chr3A 672867647 672871024 3377 True 6239.000000 6239 100.000 1 3378 1 chr3A.!!$R1 3377
1 TraesCS3A01G429900 chr3B 711883547 711885092 1545 True 1814.000000 1814 87.860 750 2331 1 chr3B.!!$R1 1581
2 TraesCS3A01G429900 chr3B 711639489 711644847 5358 True 1210.000000 3077 86.842 38 3374 3 chr3B.!!$R4 3336
3 TraesCS3A01G429900 chr3D 537556107 537559298 3191 True 1292.666667 2710 86.589 38 3332 3 chr3D.!!$R2 3294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 226 0.039074 GCACACACGAGACTGCTAGT 60.039 55.0 0.0 0.0 0.0 2.57 F
903 3135 0.108774 CTCCCGCTATCCCTTTTCCC 59.891 60.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 3900 0.318762 AAGGAACTCGTCAGCACTCC 59.681 55.0 0.00 0.0 38.49 3.85 R
2891 5225 0.036010 GTGTGTAGCAGTGCTCCCAT 60.036 55.0 23.64 0.0 40.44 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.649531 AACTGGTTTTCGTGGATGGA 57.350 45.000 0.00 0.00 0.00 3.41
20 21 1.892209 ACTGGTTTTCGTGGATGGAC 58.108 50.000 0.00 0.00 0.00 4.02
21 22 1.165270 CTGGTTTTCGTGGATGGACC 58.835 55.000 0.00 0.00 39.54 4.46
22 23 0.604243 TGGTTTTCGTGGATGGACCG 60.604 55.000 0.00 0.00 42.61 4.79
23 24 0.320946 GGTTTTCGTGGATGGACCGA 60.321 55.000 0.00 0.00 42.61 4.69
24 25 1.677820 GGTTTTCGTGGATGGACCGAT 60.678 52.381 0.00 0.00 42.61 4.18
25 26 1.664151 GTTTTCGTGGATGGACCGATC 59.336 52.381 0.00 0.00 42.61 3.69
26 27 0.179121 TTTCGTGGATGGACCGATCG 60.179 55.000 8.51 8.51 42.61 3.69
27 28 1.033202 TTCGTGGATGGACCGATCGA 61.033 55.000 18.66 0.00 42.61 3.59
28 29 0.822121 TCGTGGATGGACCGATCGAT 60.822 55.000 18.66 0.00 42.61 3.59
29 30 0.387367 CGTGGATGGACCGATCGATC 60.387 60.000 18.66 15.68 42.61 3.69
69 70 5.521516 TGTCGTACTCGTACTAGAACAAG 57.478 43.478 0.69 0.00 38.33 3.16
70 71 5.230182 TGTCGTACTCGTACTAGAACAAGA 58.770 41.667 0.69 0.00 38.33 3.02
71 72 5.696270 TGTCGTACTCGTACTAGAACAAGAA 59.304 40.000 0.69 0.00 38.33 2.52
72 73 6.128715 TGTCGTACTCGTACTAGAACAAGAAG 60.129 42.308 0.69 0.00 38.33 2.85
73 74 6.090088 GTCGTACTCGTACTAGAACAAGAAGA 59.910 42.308 0.69 0.00 38.33 2.87
74 75 6.309980 TCGTACTCGTACTAGAACAAGAAGAG 59.690 42.308 0.69 0.00 38.33 2.85
111 126 1.743996 AGGAAAGCAAAGAGATCCGC 58.256 50.000 0.00 0.00 35.31 5.54
151 169 2.626088 GCATCAGCAAAGGAGACAAC 57.374 50.000 0.00 0.00 41.58 3.32
203 221 1.730902 CCGAGCACACACGAGACTG 60.731 63.158 0.00 0.00 30.81 3.51
204 222 2.368105 CGAGCACACACGAGACTGC 61.368 63.158 0.00 0.00 30.81 4.40
205 223 1.006805 GAGCACACACGAGACTGCT 60.007 57.895 8.28 8.28 42.73 4.24
206 224 0.241213 GAGCACACACGAGACTGCTA 59.759 55.000 8.46 0.00 40.10 3.49
207 225 0.242286 AGCACACACGAGACTGCTAG 59.758 55.000 7.11 0.00 38.22 3.42
208 226 0.039074 GCACACACGAGACTGCTAGT 60.039 55.000 0.00 0.00 0.00 2.57
216 234 3.615937 CACGAGACTGCTAGTACTCGTTA 59.384 47.826 19.17 0.00 46.42 3.18
221 239 3.950078 ACTGCTAGTACTCGTTAATCGC 58.050 45.455 0.00 0.00 39.67 4.58
254 272 3.894257 GCCACTAGCATAGCATCGA 57.106 52.632 0.00 0.00 44.39 3.59
255 273 1.423395 GCCACTAGCATAGCATCGAC 58.577 55.000 0.00 0.00 44.39 4.20
256 274 1.937108 GCCACTAGCATAGCATCGACC 60.937 57.143 0.00 0.00 44.39 4.79
259 277 3.312828 CACTAGCATAGCATCGACCTTC 58.687 50.000 0.00 0.00 44.39 3.46
266 2427 0.247736 AGCATCGACCTTCACAGTCC 59.752 55.000 0.00 0.00 0.00 3.85
374 2546 2.971660 TCTTCGACCCGATGCAATAA 57.028 45.000 0.00 0.00 35.23 1.40
375 2547 3.254470 TCTTCGACCCGATGCAATAAA 57.746 42.857 0.00 0.00 35.23 1.40
376 2548 2.933906 TCTTCGACCCGATGCAATAAAC 59.066 45.455 0.00 0.00 35.23 2.01
377 2549 1.282817 TCGACCCGATGCAATAAACG 58.717 50.000 0.00 0.00 0.00 3.60
378 2550 0.315869 CGACCCGATGCAATAAACGC 60.316 55.000 0.00 0.00 0.00 4.84
425 2597 1.046204 CATTCCCCGTACTCTACCCC 58.954 60.000 0.00 0.00 0.00 4.95
442 2614 2.679429 CCCCCTCCTACTCGAAGTAT 57.321 55.000 0.00 0.00 29.08 2.12
517 2689 5.341196 CACCGAAGCAAGTAAAAATTTACCG 59.659 40.000 11.41 7.48 43.03 4.02
518 2690 4.854839 CCGAAGCAAGTAAAAATTTACCGG 59.145 41.667 0.00 0.00 43.03 5.28
524 2700 5.164129 GCAAGTAAAAATTTACCGGAAAGCG 60.164 40.000 9.46 0.00 43.03 4.68
537 2713 0.110238 GAAAGCGCACGCAATGAAGA 60.110 50.000 18.24 0.00 44.88 2.87
538 2714 0.310543 AAAGCGCACGCAATGAAGAA 59.689 45.000 18.24 0.00 44.88 2.52
539 2715 0.310543 AAGCGCACGCAATGAAGAAA 59.689 45.000 18.24 0.00 44.88 2.52
540 2716 0.110056 AGCGCACGCAATGAAGAAAG 60.110 50.000 18.24 0.00 44.88 2.62
545 2721 1.135575 CACGCAATGAAGAAAGGAGCC 60.136 52.381 0.00 0.00 0.00 4.70
593 2769 3.544834 GGCGTCGTGAATGAATGAATGAG 60.545 47.826 0.00 0.00 0.00 2.90
667 2857 2.710096 TCCTCCAAAGATAAAGCCCG 57.290 50.000 0.00 0.00 0.00 6.13
671 2861 0.682855 CCAAAGATAAAGCCCGGCCA 60.683 55.000 5.55 0.00 0.00 5.36
699 2889 2.659897 GATGCCTCTACGCCTGCG 60.660 66.667 10.40 10.40 46.03 5.18
700 2890 4.899239 ATGCCTCTACGCCTGCGC 62.899 66.667 12.03 0.00 44.19 6.09
738 2939 3.376078 CCACCAGTGGCATGGCAC 61.376 66.667 37.59 37.59 44.80 5.01
744 2945 4.409218 GTGGCATGGCACGCACTG 62.409 66.667 33.16 0.00 0.00 3.66
767 2968 4.518249 GCAGGGCAGTAGATAGAAAGTTT 58.482 43.478 0.00 0.00 0.00 2.66
768 2969 5.396436 GGCAGGGCAGTAGATAGAAAGTTTA 60.396 44.000 0.00 0.00 0.00 2.01
798 2999 1.093496 CGGATAAAACCAGGACCCGC 61.093 60.000 0.00 0.00 0.00 6.13
877 3109 0.247934 GCGCTGCCGTGTATAAAACC 60.248 55.000 0.00 0.00 36.67 3.27
903 3135 0.108774 CTCCCGCTATCCCTTTTCCC 59.891 60.000 0.00 0.00 0.00 3.97
911 3155 4.023291 GCTATCCCTTTTCCCAAACATCA 58.977 43.478 0.00 0.00 0.00 3.07
1003 3297 0.394192 TGCCGCCAGAGATAAGATGG 59.606 55.000 0.00 0.00 37.15 3.51
1038 3332 2.039216 CTCTCTCTATACCTGCGGAGGA 59.961 54.545 31.46 13.73 42.93 3.71
1039 3333 2.442126 TCTCTCTATACCTGCGGAGGAA 59.558 50.000 31.46 13.22 42.93 3.36
1040 3334 2.554893 CTCTCTATACCTGCGGAGGAAC 59.445 54.545 31.46 0.00 42.93 3.62
1041 3335 1.614413 CTCTATACCTGCGGAGGAACC 59.386 57.143 31.46 0.00 42.93 3.62
1086 3380 1.567357 GGCAGAAGAGGAAGAGGTCT 58.433 55.000 0.00 0.00 0.00 3.85
1155 3449 2.582978 GGGCCGGACTACTTGGAC 59.417 66.667 7.57 0.00 0.00 4.02
1526 3820 2.135933 GCTACATTCTCGGCATGGTAC 58.864 52.381 0.00 0.00 0.00 3.34
1528 3822 0.535335 ACATTCTCGGCATGGTACGT 59.465 50.000 0.00 0.00 0.00 3.57
1531 3825 0.319083 TTCTCGGCATGGTACGTGTT 59.681 50.000 0.00 0.00 0.00 3.32
1534 3828 0.248012 TCGGCATGGTACGTGTTGAT 59.752 50.000 0.00 0.00 0.00 2.57
1537 3831 1.396996 GGCATGGTACGTGTTGATGAC 59.603 52.381 0.00 0.00 0.00 3.06
1539 3833 2.935238 GCATGGTACGTGTTGATGACCT 60.935 50.000 0.00 0.00 0.00 3.85
1545 3843 5.653330 TGGTACGTGTTGATGACCTAATCTA 59.347 40.000 0.00 0.00 0.00 1.98
1574 3872 1.323534 GATCGTTCGGTTTGACATCCG 59.676 52.381 11.72 11.72 46.93 4.18
1600 3898 2.983879 ATGGCCGGAGTTTCAGGGG 61.984 63.158 5.05 0.00 32.07 4.79
1602 3900 2.359975 GCCGGAGTTTCAGGGGTG 60.360 66.667 5.05 0.00 32.07 4.61
1603 3901 2.351276 CCGGAGTTTCAGGGGTGG 59.649 66.667 0.00 0.00 0.00 4.61
1618 3916 0.667792 GGTGGAGTGCTGACGAGTTC 60.668 60.000 0.00 0.00 0.00 3.01
2347 4648 4.457496 ATGGACCGCTGGCTCGTG 62.457 66.667 0.00 0.00 0.00 4.35
2407 4727 4.645921 GGCAACCACCGCTGCAAC 62.646 66.667 0.00 0.00 40.46 4.17
2429 4749 2.997897 AGCACCGGAGAGTCCACC 60.998 66.667 9.46 0.00 35.91 4.61
2510 4830 3.518634 TTCTGGCGTTTTGCTTTCTTT 57.481 38.095 0.00 0.00 45.43 2.52
2562 4882 7.379529 GTCAGATGTACGTACTCTACTCTACTC 59.620 44.444 25.12 7.49 0.00 2.59
2570 4890 4.840716 ACTCTACTCTACTCGGGAAGAA 57.159 45.455 0.00 0.00 0.00 2.52
2601 4921 4.171103 ATTCTACCGCGGCCACCC 62.171 66.667 28.58 0.00 0.00 4.61
2619 4939 1.630878 CCCACCAGAACTCTAGCCTTT 59.369 52.381 0.00 0.00 0.00 3.11
2620 4940 2.616510 CCCACCAGAACTCTAGCCTTTG 60.617 54.545 0.00 0.00 0.00 2.77
2624 4944 4.580580 CACCAGAACTCTAGCCTTTGTTTT 59.419 41.667 0.00 0.00 0.00 2.43
2625 4945 4.822350 ACCAGAACTCTAGCCTTTGTTTTC 59.178 41.667 0.00 0.00 0.00 2.29
2629 4949 6.710744 CAGAACTCTAGCCTTTGTTTTCCTAA 59.289 38.462 0.00 0.00 0.00 2.69
2631 4951 7.608376 AGAACTCTAGCCTTTGTTTTCCTAATC 59.392 37.037 0.00 0.00 0.00 1.75
2634 4954 7.945109 ACTCTAGCCTTTGTTTTCCTAATCTTT 59.055 33.333 0.00 0.00 0.00 2.52
2637 4957 7.220741 AGCCTTTGTTTTCCTAATCTTTCTC 57.779 36.000 0.00 0.00 0.00 2.87
2638 4958 7.007116 AGCCTTTGTTTTCCTAATCTTTCTCT 58.993 34.615 0.00 0.00 0.00 3.10
2639 4959 7.175816 AGCCTTTGTTTTCCTAATCTTTCTCTC 59.824 37.037 0.00 0.00 0.00 3.20
2641 4961 8.726068 CCTTTGTTTTCCTAATCTTTCTCTCTC 58.274 37.037 0.00 0.00 0.00 3.20
2647 4967 9.508642 TTTTCCTAATCTTTCTCTCTCTTTTCC 57.491 33.333 0.00 0.00 0.00 3.13
2648 4968 6.868622 TCCTAATCTTTCTCTCTCTTTTCCG 58.131 40.000 0.00 0.00 0.00 4.30
2650 4970 7.614583 TCCTAATCTTTCTCTCTCTTTTCCGTA 59.385 37.037 0.00 0.00 0.00 4.02
2651 4971 7.703197 CCTAATCTTTCTCTCTCTTTTCCGTAC 59.297 40.741 0.00 0.00 0.00 3.67
2652 4972 6.844097 ATCTTTCTCTCTCTTTTCCGTACT 57.156 37.500 0.00 0.00 0.00 2.73
2653 4973 6.256912 TCTTTCTCTCTCTTTTCCGTACTC 57.743 41.667 0.00 0.00 0.00 2.59
2654 4974 5.768662 TCTTTCTCTCTCTTTTCCGTACTCA 59.231 40.000 0.00 0.00 0.00 3.41
2655 4975 6.264744 TCTTTCTCTCTCTTTTCCGTACTCAA 59.735 38.462 0.00 0.00 0.00 3.02
2656 4976 6.591750 TTCTCTCTCTTTTCCGTACTCAAT 57.408 37.500 0.00 0.00 0.00 2.57
2657 4977 6.591750 TCTCTCTCTTTTCCGTACTCAATT 57.408 37.500 0.00 0.00 0.00 2.32
2659 4979 7.763356 TCTCTCTCTTTTCCGTACTCAATTAG 58.237 38.462 0.00 0.00 0.00 1.73
2676 4996 7.993758 ACTCAATTAGTTAGCCCCTCTTAAATC 59.006 37.037 0.00 0.00 33.35 2.17
2680 5000 8.926092 ATTAGTTAGCCCCTCTTAAATCAATC 57.074 34.615 0.00 0.00 0.00 2.67
2784 5112 2.360844 TCTGTCGCTTTGTGTTTTGGA 58.639 42.857 0.00 0.00 0.00 3.53
2807 5135 2.196776 GGATGGATGCTGTGGGGG 59.803 66.667 0.00 0.00 0.00 5.40
2839 5167 0.979665 AGCAGTGCTCCATGTACACT 59.020 50.000 13.14 6.67 45.25 3.55
2840 5168 2.179427 AGCAGTGCTCCATGTACACTA 58.821 47.619 13.14 0.00 42.59 2.74
2841 5169 2.093973 AGCAGTGCTCCATGTACACTAC 60.094 50.000 13.14 7.02 42.59 2.73
2877 5211 1.699656 TACGCTACGTGCCTCTCGTC 61.700 60.000 0.00 0.00 41.39 4.20
2890 5224 1.194997 CTCTCGTCCGTAGCTTATCGG 59.805 57.143 15.33 15.33 46.93 4.18
2897 5231 2.638556 CGTAGCTTATCGGATGGGAG 57.361 55.000 0.00 0.00 0.00 4.30
2898 5232 1.402984 CGTAGCTTATCGGATGGGAGC 60.403 57.143 12.19 12.19 0.00 4.70
2899 5233 1.618837 GTAGCTTATCGGATGGGAGCA 59.381 52.381 18.52 7.62 35.86 4.26
2900 5234 0.394565 AGCTTATCGGATGGGAGCAC 59.605 55.000 18.52 0.00 35.86 4.40
2901 5235 0.394565 GCTTATCGGATGGGAGCACT 59.605 55.000 14.12 0.00 33.68 4.40
2902 5236 1.875576 GCTTATCGGATGGGAGCACTG 60.876 57.143 14.12 0.00 33.68 3.66
2903 5237 0.106708 TTATCGGATGGGAGCACTGC 59.893 55.000 0.00 0.00 0.00 4.40
2904 5238 0.760567 TATCGGATGGGAGCACTGCT 60.761 55.000 2.22 2.22 43.88 4.24
2905 5239 0.760567 ATCGGATGGGAGCACTGCTA 60.761 55.000 2.71 0.00 39.88 3.49
2906 5240 1.227380 CGGATGGGAGCACTGCTAC 60.227 63.158 4.44 4.44 39.88 3.58
2907 5241 1.907739 GGATGGGAGCACTGCTACA 59.092 57.895 15.44 12.22 42.18 2.74
2908 5242 0.462759 GGATGGGAGCACTGCTACAC 60.463 60.000 15.44 5.32 42.18 2.90
2909 5243 0.250234 GATGGGAGCACTGCTACACA 59.750 55.000 15.44 10.65 42.18 3.72
2910 5244 0.036010 ATGGGAGCACTGCTACACAC 60.036 55.000 15.44 0.00 42.18 3.82
2911 5245 1.371183 GGGAGCACTGCTACACACA 59.629 57.895 15.44 0.00 42.18 3.72
2912 5246 0.951040 GGGAGCACTGCTACACACAC 60.951 60.000 15.44 0.00 42.18 3.82
2913 5247 1.284982 GGAGCACTGCTACACACACG 61.285 60.000 8.52 0.00 39.71 4.49
2914 5248 0.318699 GAGCACTGCTACACACACGA 60.319 55.000 2.71 0.00 39.88 4.35
2915 5249 0.318441 AGCACTGCTACACACACGAT 59.682 50.000 0.21 0.00 36.99 3.73
2916 5250 1.544246 AGCACTGCTACACACACGATA 59.456 47.619 0.21 0.00 36.99 2.92
2917 5251 2.029380 AGCACTGCTACACACACGATAA 60.029 45.455 0.21 0.00 36.99 1.75
2918 5252 2.734606 GCACTGCTACACACACGATAAA 59.265 45.455 0.00 0.00 0.00 1.40
2919 5253 3.370978 GCACTGCTACACACACGATAAAT 59.629 43.478 0.00 0.00 0.00 1.40
2920 5254 4.142902 GCACTGCTACACACACGATAAATT 60.143 41.667 0.00 0.00 0.00 1.82
2921 5255 5.550981 CACTGCTACACACACGATAAATTC 58.449 41.667 0.00 0.00 0.00 2.17
2922 5256 5.120053 CACTGCTACACACACGATAAATTCA 59.880 40.000 0.00 0.00 0.00 2.57
2923 5257 5.874810 ACTGCTACACACACGATAAATTCAT 59.125 36.000 0.00 0.00 0.00 2.57
2924 5258 6.105657 TGCTACACACACGATAAATTCATG 57.894 37.500 0.00 0.00 0.00 3.07
2925 5259 4.963953 GCTACACACACGATAAATTCATGC 59.036 41.667 0.00 0.00 0.00 4.06
2926 5260 5.447144 GCTACACACACGATAAATTCATGCA 60.447 40.000 0.00 0.00 0.00 3.96
2927 5261 4.722194 ACACACACGATAAATTCATGCAC 58.278 39.130 0.00 0.00 0.00 4.57
2928 5262 3.780279 CACACACGATAAATTCATGCACG 59.220 43.478 0.00 0.00 0.00 5.34
2929 5263 3.682377 ACACACGATAAATTCATGCACGA 59.318 39.130 0.00 0.00 0.00 4.35
2930 5264 4.332543 ACACACGATAAATTCATGCACGAT 59.667 37.500 0.00 0.00 0.00 3.73
2931 5265 4.900182 CACACGATAAATTCATGCACGATC 59.100 41.667 0.00 0.00 0.00 3.69
2932 5266 4.811024 ACACGATAAATTCATGCACGATCT 59.189 37.500 0.00 0.00 0.00 2.75
2933 5267 5.135330 CACGATAAATTCATGCACGATCTG 58.865 41.667 0.00 0.00 0.00 2.90
2941 5275 4.196826 GCACGATCTGCGCACGAC 62.197 66.667 23.36 12.10 46.04 4.34
2942 5276 2.804931 CACGATCTGCGCACGACA 60.805 61.111 23.36 1.02 46.04 4.35
2943 5277 2.049526 ACGATCTGCGCACGACAA 60.050 55.556 23.36 0.29 46.04 3.18
2944 5278 2.372690 ACGATCTGCGCACGACAAC 61.373 57.895 23.36 11.32 46.04 3.32
2945 5279 2.371923 CGATCTGCGCACGACAACA 61.372 57.895 5.66 0.00 0.00 3.33
2946 5280 1.130613 GATCTGCGCACGACAACAC 59.869 57.895 5.66 0.00 0.00 3.32
2947 5281 1.556591 GATCTGCGCACGACAACACA 61.557 55.000 5.66 0.00 0.00 3.72
2948 5282 0.950555 ATCTGCGCACGACAACACAT 60.951 50.000 5.66 0.00 0.00 3.21
2949 5283 1.154599 CTGCGCACGACAACACATC 60.155 57.895 5.66 0.00 0.00 3.06
2950 5284 1.560004 CTGCGCACGACAACACATCT 61.560 55.000 5.66 0.00 0.00 2.90
2951 5285 0.319125 TGCGCACGACAACACATCTA 60.319 50.000 5.66 0.00 0.00 1.98
2952 5286 0.093026 GCGCACGACAACACATCTAC 59.907 55.000 0.30 0.00 0.00 2.59
2953 5287 1.414378 CGCACGACAACACATCTACA 58.586 50.000 0.00 0.00 0.00 2.74
2954 5288 1.124297 CGCACGACAACACATCTACAC 59.876 52.381 0.00 0.00 0.00 2.90
2955 5289 1.459592 GCACGACAACACATCTACACC 59.540 52.381 0.00 0.00 0.00 4.16
2956 5290 2.066262 CACGACAACACATCTACACCC 58.934 52.381 0.00 0.00 0.00 4.61
2957 5291 1.968493 ACGACAACACATCTACACCCT 59.032 47.619 0.00 0.00 0.00 4.34
2958 5292 2.367567 ACGACAACACATCTACACCCTT 59.632 45.455 0.00 0.00 0.00 3.95
2959 5293 2.736721 CGACAACACATCTACACCCTTG 59.263 50.000 0.00 0.00 0.00 3.61
2960 5294 3.074412 GACAACACATCTACACCCTTGG 58.926 50.000 0.00 0.00 0.00 3.61
2961 5295 2.224769 ACAACACATCTACACCCTTGGG 60.225 50.000 3.77 3.77 0.00 4.12
2962 5296 1.742308 ACACATCTACACCCTTGGGT 58.258 50.000 5.34 5.34 0.00 4.51
2963 5297 2.062636 ACACATCTACACCCTTGGGTT 58.937 47.619 8.91 3.95 0.00 4.11
2964 5298 2.224769 ACACATCTACACCCTTGGGTTG 60.225 50.000 8.91 7.23 0.00 3.77
2965 5299 1.271926 ACATCTACACCCTTGGGTTGC 60.272 52.381 8.91 0.00 0.00 4.17
2966 5300 0.331616 ATCTACACCCTTGGGTTGCC 59.668 55.000 8.91 0.00 0.00 4.52
2967 5301 0.770557 TCTACACCCTTGGGTTGCCT 60.771 55.000 8.91 0.00 0.00 4.75
2968 5302 0.322546 CTACACCCTTGGGTTGCCTC 60.323 60.000 8.91 0.00 0.00 4.70
2969 5303 2.119484 TACACCCTTGGGTTGCCTCG 62.119 60.000 8.91 0.00 0.00 4.63
2970 5304 3.175710 ACCCTTGGGTTGCCTCGT 61.176 61.111 5.34 0.00 0.00 4.18
2971 5305 2.115266 CCCTTGGGTTGCCTCGTT 59.885 61.111 0.00 0.00 0.00 3.85
2972 5306 1.530655 CCCTTGGGTTGCCTCGTTT 60.531 57.895 0.00 0.00 0.00 3.60
2973 5307 1.524008 CCCTTGGGTTGCCTCGTTTC 61.524 60.000 0.00 0.00 0.00 2.78
2974 5308 1.574428 CTTGGGTTGCCTCGTTTCG 59.426 57.895 0.00 0.00 0.00 3.46
2975 5309 1.153127 TTGGGTTGCCTCGTTTCGT 60.153 52.632 0.00 0.00 0.00 3.85
2976 5310 0.106335 TTGGGTTGCCTCGTTTCGTA 59.894 50.000 0.00 0.00 0.00 3.43
2977 5311 0.106335 TGGGTTGCCTCGTTTCGTAA 59.894 50.000 0.00 0.00 0.00 3.18
2978 5312 1.228533 GGGTTGCCTCGTTTCGTAAA 58.771 50.000 0.00 0.00 0.00 2.01
2979 5313 1.808343 GGGTTGCCTCGTTTCGTAAAT 59.192 47.619 0.00 0.00 0.00 1.40
2980 5314 2.159612 GGGTTGCCTCGTTTCGTAAATC 60.160 50.000 0.00 0.00 0.00 2.17
2981 5315 2.740447 GGTTGCCTCGTTTCGTAAATCT 59.260 45.455 0.00 0.00 0.00 2.40
2982 5316 3.181523 GGTTGCCTCGTTTCGTAAATCTC 60.182 47.826 0.00 0.00 0.00 2.75
2983 5317 3.587797 TGCCTCGTTTCGTAAATCTCT 57.412 42.857 0.00 0.00 0.00 3.10
2984 5318 3.250744 TGCCTCGTTTCGTAAATCTCTG 58.749 45.455 0.00 0.00 0.00 3.35
2985 5319 3.251571 GCCTCGTTTCGTAAATCTCTGT 58.748 45.455 0.00 0.00 0.00 3.41
2986 5320 3.060895 GCCTCGTTTCGTAAATCTCTGTG 59.939 47.826 0.00 0.00 0.00 3.66
2987 5321 3.612860 CCTCGTTTCGTAAATCTCTGTGG 59.387 47.826 0.00 0.00 0.00 4.17
2988 5322 2.991190 TCGTTTCGTAAATCTCTGTGGC 59.009 45.455 0.00 0.00 0.00 5.01
2989 5323 2.093783 CGTTTCGTAAATCTCTGTGGCC 59.906 50.000 0.00 0.00 0.00 5.36
2990 5324 2.396590 TTCGTAAATCTCTGTGGCCC 57.603 50.000 0.00 0.00 0.00 5.80
2991 5325 1.271856 TCGTAAATCTCTGTGGCCCA 58.728 50.000 0.00 0.00 0.00 5.36
2992 5326 1.626321 TCGTAAATCTCTGTGGCCCAA 59.374 47.619 0.00 0.00 0.00 4.12
2993 5327 2.039216 TCGTAAATCTCTGTGGCCCAAA 59.961 45.455 0.00 0.00 0.00 3.28
2994 5328 3.016736 CGTAAATCTCTGTGGCCCAAAT 58.983 45.455 0.00 0.00 0.00 2.32
2995 5329 3.065371 CGTAAATCTCTGTGGCCCAAATC 59.935 47.826 0.00 0.00 0.00 2.17
2996 5330 2.905415 AATCTCTGTGGCCCAAATCA 57.095 45.000 0.00 0.00 0.00 2.57
2997 5331 3.393426 AATCTCTGTGGCCCAAATCAT 57.607 42.857 0.00 0.00 0.00 2.45
2998 5332 2.133281 TCTCTGTGGCCCAAATCATG 57.867 50.000 0.00 0.00 0.00 3.07
2999 5333 1.355381 TCTCTGTGGCCCAAATCATGT 59.645 47.619 0.00 0.00 0.00 3.21
3000 5334 1.747355 CTCTGTGGCCCAAATCATGTC 59.253 52.381 0.00 0.00 0.00 3.06
3001 5335 0.452987 CTGTGGCCCAAATCATGTCG 59.547 55.000 0.00 0.00 0.00 4.35
3002 5336 0.251121 TGTGGCCCAAATCATGTCGT 60.251 50.000 0.00 0.00 0.00 4.34
3003 5337 0.171007 GTGGCCCAAATCATGTCGTG 59.829 55.000 0.00 0.00 0.00 4.35
3004 5338 0.251121 TGGCCCAAATCATGTCGTGT 60.251 50.000 0.00 0.00 0.00 4.49
3005 5339 0.171007 GGCCCAAATCATGTCGTGTG 59.829 55.000 0.00 0.00 0.00 3.82
3006 5340 0.881118 GCCCAAATCATGTCGTGTGT 59.119 50.000 0.00 0.00 0.00 3.72
3007 5341 1.401409 GCCCAAATCATGTCGTGTGTG 60.401 52.381 0.00 0.00 0.00 3.82
3008 5342 1.199789 CCCAAATCATGTCGTGTGTGG 59.800 52.381 0.00 0.00 0.00 4.17
3009 5343 2.150390 CCAAATCATGTCGTGTGTGGA 58.850 47.619 0.00 0.00 0.00 4.02
3010 5344 2.749076 CCAAATCATGTCGTGTGTGGAT 59.251 45.455 0.00 0.00 0.00 3.41
3011 5345 3.181507 CCAAATCATGTCGTGTGTGGATC 60.182 47.826 0.00 0.00 0.00 3.36
3012 5346 1.926561 ATCATGTCGTGTGTGGATCG 58.073 50.000 0.00 0.00 0.00 3.69
3013 5347 0.601057 TCATGTCGTGTGTGGATCGT 59.399 50.000 0.00 0.00 0.00 3.73
3014 5348 0.715551 CATGTCGTGTGTGGATCGTG 59.284 55.000 0.00 0.00 0.00 4.35
3015 5349 1.014044 ATGTCGTGTGTGGATCGTGC 61.014 55.000 0.00 0.00 0.00 5.34
3016 5350 1.663388 GTCGTGTGTGGATCGTGCA 60.663 57.895 0.00 0.00 0.00 4.57
3017 5351 1.014044 GTCGTGTGTGGATCGTGCAT 61.014 55.000 0.00 0.00 0.00 3.96
3018 5352 1.013524 TCGTGTGTGGATCGTGCATG 61.014 55.000 0.00 0.00 0.00 4.06
3019 5353 1.135315 GTGTGTGGATCGTGCATGC 59.865 57.895 11.82 11.82 0.00 4.06
3020 5354 1.302351 TGTGTGGATCGTGCATGCA 60.302 52.632 18.46 18.46 0.00 3.96
3037 5371 2.738521 ACGGATCGTGTGCACAGC 60.739 61.111 22.40 14.14 39.18 4.40
3038 5372 2.738139 CGGATCGTGTGCACAGCA 60.738 61.111 22.40 10.22 35.60 4.41
3047 5381 4.284123 TGCACAGCACTTCCGATC 57.716 55.556 0.00 0.00 31.71 3.69
3048 5382 1.737735 TGCACAGCACTTCCGATCG 60.738 57.895 8.51 8.51 31.71 3.69
3049 5383 2.456119 GCACAGCACTTCCGATCGG 61.456 63.158 28.62 28.62 0.00 4.18
3050 5384 1.215382 CACAGCACTTCCGATCGGA 59.785 57.895 32.59 32.59 43.52 4.55
3051 5385 0.179100 CACAGCACTTCCGATCGGAT 60.179 55.000 35.89 20.81 44.74 4.18
3123 5458 2.289565 GGCATAGTGTAGGCTTTGGTC 58.710 52.381 0.00 0.00 35.49 4.02
3153 5488 2.617274 GCACGGGACAAGTTGGAGC 61.617 63.158 7.96 0.00 0.00 4.70
3215 5550 2.487746 TCCATGTAGGCCACCATAGA 57.512 50.000 5.01 1.75 37.29 1.98
3216 5551 2.047061 TCCATGTAGGCCACCATAGAC 58.953 52.381 5.01 0.00 37.29 2.59
3217 5552 1.768275 CCATGTAGGCCACCATAGACA 59.232 52.381 5.01 0.00 0.00 3.41
3218 5553 2.373169 CCATGTAGGCCACCATAGACAT 59.627 50.000 5.01 0.00 0.00 3.06
3219 5554 3.582647 CCATGTAGGCCACCATAGACATA 59.417 47.826 5.01 0.00 0.00 2.29
3220 5555 4.323028 CCATGTAGGCCACCATAGACATAG 60.323 50.000 5.01 0.00 0.00 2.23
3238 5573 2.551912 GCCAAAGTGACACCACCCG 61.552 63.158 0.84 0.00 44.22 5.28
3254 5589 2.561373 CGGCCGGCTTTTGTTCTC 59.439 61.111 28.56 4.75 0.00 2.87
3282 5620 7.012661 TCCTTTACTTTTCTGTTACCTAGGG 57.987 40.000 14.81 0.00 0.00 3.53
3345 5707 1.739466 CGTACTACCACGACTAGCCAA 59.261 52.381 0.00 0.00 44.69 4.52
3346 5708 2.223203 CGTACTACCACGACTAGCCAAG 60.223 54.545 0.00 0.00 44.69 3.61
3349 5711 1.610554 TACCACGACTAGCCAAGCCC 61.611 60.000 0.00 0.00 0.00 5.19
3350 5712 2.509336 CACGACTAGCCAAGCCCG 60.509 66.667 0.00 0.00 0.00 6.13
3351 5713 4.452733 ACGACTAGCCAAGCCCGC 62.453 66.667 0.00 0.00 0.00 6.13
3352 5714 4.148825 CGACTAGCCAAGCCCGCT 62.149 66.667 0.00 0.00 40.45 5.52
3353 5715 2.202946 GACTAGCCAAGCCCGCTC 60.203 66.667 0.00 0.00 37.79 5.03
3354 5716 3.741830 GACTAGCCAAGCCCGCTCC 62.742 68.421 0.00 0.00 37.79 4.70
3355 5717 4.899239 CTAGCCAAGCCCGCTCCG 62.899 72.222 0.00 0.00 37.79 4.63
3369 5732 2.548067 CCGCTCCGTTCTTATATGGCTT 60.548 50.000 0.00 0.00 0.00 4.35
3374 5737 2.476619 CCGTTCTTATATGGCTTGAGCG 59.523 50.000 0.00 0.00 43.26 5.03
3375 5738 2.476619 CGTTCTTATATGGCTTGAGCGG 59.523 50.000 0.00 0.00 43.26 5.52
3376 5739 3.728845 GTTCTTATATGGCTTGAGCGGA 58.271 45.455 0.00 0.00 43.26 5.54
3377 5740 3.386768 TCTTATATGGCTTGAGCGGAC 57.613 47.619 0.00 0.00 43.26 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.227194 GTCCATCCACGAAAACCAGTT 58.773 47.619 0.00 0.00 0.00 3.16
1 2 1.544759 GGTCCATCCACGAAAACCAGT 60.545 52.381 0.00 0.00 35.97 4.00
2 3 1.165270 GGTCCATCCACGAAAACCAG 58.835 55.000 0.00 0.00 35.97 4.00
3 4 0.604243 CGGTCCATCCACGAAAACCA 60.604 55.000 0.00 0.00 35.57 3.67
4 5 0.320946 TCGGTCCATCCACGAAAACC 60.321 55.000 0.00 0.00 35.57 3.27
5 6 1.664151 GATCGGTCCATCCACGAAAAC 59.336 52.381 0.00 0.00 40.27 2.43
6 7 1.737696 CGATCGGTCCATCCACGAAAA 60.738 52.381 7.38 0.00 40.27 2.29
7 8 0.179121 CGATCGGTCCATCCACGAAA 60.179 55.000 7.38 0.00 40.27 3.46
8 9 1.033202 TCGATCGGTCCATCCACGAA 61.033 55.000 16.41 0.00 40.27 3.85
9 10 0.822121 ATCGATCGGTCCATCCACGA 60.822 55.000 16.41 0.00 41.20 4.35
10 11 0.387367 GATCGATCGGTCCATCCACG 60.387 60.000 17.77 0.00 35.57 4.94
11 12 0.387367 CGATCGATCGGTCCATCCAC 60.387 60.000 34.54 1.16 45.93 4.02
12 13 1.956802 CGATCGATCGGTCCATCCA 59.043 57.895 34.54 0.00 45.93 3.41
13 14 4.870305 CGATCGATCGGTCCATCC 57.130 61.111 34.54 2.44 45.93 3.51
31 32 0.249447 GACAAGGTTGTGGCAAAGGC 60.249 55.000 0.00 0.00 42.43 4.35
32 33 0.030638 CGACAAGGTTGTGGCAAAGG 59.969 55.000 0.00 0.00 42.43 3.11
33 34 0.738389 ACGACAAGGTTGTGGCAAAG 59.262 50.000 0.00 0.00 42.43 2.77
34 35 1.671845 GTACGACAAGGTTGTGGCAAA 59.328 47.619 0.00 0.00 42.43 3.68
35 36 1.134340 AGTACGACAAGGTTGTGGCAA 60.134 47.619 0.00 0.00 42.43 4.52
36 37 0.466543 AGTACGACAAGGTTGTGGCA 59.533 50.000 0.00 0.00 42.43 4.92
41 42 3.549299 AGTACGAGTACGACAAGGTTG 57.451 47.619 7.64 0.00 42.66 3.77
69 70 0.673956 GGACGCAACCCTTCCTCTTC 60.674 60.000 0.00 0.00 0.00 2.87
70 71 1.375326 GGACGCAACCCTTCCTCTT 59.625 57.895 0.00 0.00 0.00 2.85
71 72 1.841556 TGGACGCAACCCTTCCTCT 60.842 57.895 0.00 0.00 33.19 3.69
72 73 1.671379 GTGGACGCAACCCTTCCTC 60.671 63.158 0.00 0.00 33.19 3.71
73 74 1.990160 TTGTGGACGCAACCCTTCCT 61.990 55.000 0.00 0.00 33.19 3.36
74 75 1.515521 CTTGTGGACGCAACCCTTCC 61.516 60.000 0.00 0.00 32.64 3.46
116 131 1.315257 ATGCAGCATCGGTTCCAACC 61.315 55.000 0.52 0.00 45.76 3.77
151 169 3.763319 CGGTTTGGACGCTACTCG 58.237 61.111 0.00 0.00 45.38 4.18
203 221 4.150343 GCTAGCGATTAACGAGTACTAGC 58.850 47.826 0.00 0.00 43.53 3.42
204 222 5.340010 TGCTAGCGATTAACGAGTACTAG 57.660 43.478 10.77 0.00 45.77 2.57
205 223 5.936686 ATGCTAGCGATTAACGAGTACTA 57.063 39.130 10.77 0.00 45.77 1.82
206 224 4.832590 ATGCTAGCGATTAACGAGTACT 57.167 40.909 10.77 0.00 45.77 2.73
207 225 5.687828 AGTATGCTAGCGATTAACGAGTAC 58.312 41.667 10.77 0.95 45.77 2.73
208 226 5.699915 AGAGTATGCTAGCGATTAACGAGTA 59.300 40.000 10.77 0.00 45.77 2.59
216 234 3.057174 GGCAGTAGAGTATGCTAGCGATT 60.057 47.826 10.77 0.00 42.19 3.34
221 239 4.083003 GCTAGTGGCAGTAGAGTATGCTAG 60.083 50.000 29.05 13.72 42.19 3.42
246 264 1.476891 GGACTGTGAAGGTCGATGCTA 59.523 52.381 0.00 0.00 34.82 3.49
249 267 2.341257 CTTGGACTGTGAAGGTCGATG 58.659 52.381 0.00 0.00 34.82 3.84
251 269 0.033504 GCTTGGACTGTGAAGGTCGA 59.966 55.000 0.00 0.00 34.82 4.20
252 270 0.951040 GGCTTGGACTGTGAAGGTCG 60.951 60.000 0.00 0.00 34.82 4.79
253 271 0.398318 AGGCTTGGACTGTGAAGGTC 59.602 55.000 0.00 0.00 0.00 3.85
254 272 0.109342 CAGGCTTGGACTGTGAAGGT 59.891 55.000 0.00 0.00 33.29 3.50
255 273 2.938354 CAGGCTTGGACTGTGAAGG 58.062 57.895 0.00 0.00 33.29 3.46
266 2427 3.752339 GCTTTCGGCCCAGGCTTG 61.752 66.667 8.89 1.83 41.60 4.01
331 2498 1.860078 GGAAACGTGAAGGCACTCG 59.140 57.895 0.00 0.00 42.93 4.18
355 2522 2.933906 GTTTATTGCATCGGGTCGAAGA 59.066 45.455 0.00 0.00 39.99 2.87
396 2568 2.043953 GGGGAATGGGTGGAGTGC 60.044 66.667 0.00 0.00 0.00 4.40
425 2597 3.058363 GCGTTATACTTCGAGTAGGAGGG 60.058 52.174 0.00 0.00 33.66 4.30
432 2604 2.285834 CCGTACGCGTTATACTTCGAGT 60.286 50.000 20.78 0.00 41.97 4.18
434 2606 1.663643 ACCGTACGCGTTATACTTCGA 59.336 47.619 20.78 0.00 36.15 3.71
435 2607 2.091152 ACCGTACGCGTTATACTTCG 57.909 50.000 20.78 10.95 36.15 3.79
442 2614 1.728068 TACCAGTACCGTACGCGTTA 58.272 50.000 20.78 0.00 36.15 3.18
517 2689 1.067199 CTTCATTGCGTGCGCTTTCC 61.067 55.000 17.49 0.00 42.51 3.13
518 2690 0.110238 TCTTCATTGCGTGCGCTTTC 60.110 50.000 17.49 0.00 42.51 2.62
524 2700 1.730446 GCTCCTTTCTTCATTGCGTGC 60.730 52.381 0.00 0.00 0.00 5.34
545 2721 2.158813 AGTTTCCATGGCCATACGTAGG 60.159 50.000 20.30 15.47 0.00 3.18
557 2733 1.926511 GACGCCAGGCAGTTTCCATG 61.927 60.000 13.30 0.00 0.00 3.66
711 2901 4.626081 ACTGGTGGAGTGGCGTGC 62.626 66.667 0.00 0.00 31.75 5.34
722 2923 3.740397 CGTGCCATGCCACTGGTG 61.740 66.667 5.16 0.00 38.63 4.17
727 2928 4.409218 CAGTGCGTGCCATGCCAC 62.409 66.667 6.41 5.02 0.00 5.01
738 2939 4.393155 TACTGCCCTGCCAGTGCG 62.393 66.667 5.16 0.00 45.17 5.34
744 2945 2.436173 ACTTTCTATCTACTGCCCTGCC 59.564 50.000 0.00 0.00 0.00 4.85
745 2946 3.828875 ACTTTCTATCTACTGCCCTGC 57.171 47.619 0.00 0.00 0.00 4.85
746 2947 8.561738 TTTTAAACTTTCTATCTACTGCCCTG 57.438 34.615 0.00 0.00 0.00 4.45
747 2948 9.232473 CTTTTTAAACTTTCTATCTACTGCCCT 57.768 33.333 0.00 0.00 0.00 5.19
748 2949 7.968956 GCTTTTTAAACTTTCTATCTACTGCCC 59.031 37.037 0.00 0.00 0.00 5.36
767 2968 3.439825 GGTTTTATCCGTCCCGCTTTTTA 59.560 43.478 0.00 0.00 0.00 1.52
768 2969 2.229543 GGTTTTATCCGTCCCGCTTTTT 59.770 45.455 0.00 0.00 0.00 1.94
903 3135 4.841422 AGTGGAGAGGAGATTGATGTTTG 58.159 43.478 0.00 0.00 0.00 2.93
911 3155 1.079490 TGGTGGAGTGGAGAGGAGATT 59.921 52.381 0.00 0.00 0.00 2.40
987 3281 1.001406 GTCCCCATCTTATCTCTGGCG 59.999 57.143 0.00 0.00 0.00 5.69
1059 3353 4.785453 CTCTTCTGCCCGGCCACC 62.785 72.222 7.03 0.00 0.00 4.61
1155 3449 3.432051 GAGGTCGTCAGGGATGCCG 62.432 68.421 0.00 0.00 0.00 5.69
1296 3590 1.959282 CAAAGCAGCAGGAGTTCCTTT 59.041 47.619 0.00 0.00 46.09 3.11
1300 3594 1.534595 CAGACAAAGCAGCAGGAGTTC 59.465 52.381 0.00 0.00 0.00 3.01
1315 3609 2.778299 GTTCAGGCAACCATACAGACA 58.222 47.619 0.00 0.00 37.17 3.41
1384 3678 1.878775 GAACACCATGTCCTGCTGC 59.121 57.895 0.00 0.00 0.00 5.25
1444 3738 3.978723 CTGCACGAGCTCGGACCAG 62.979 68.421 36.93 30.98 44.95 4.00
1526 3820 6.253727 GTCAACTAGATTAGGTCATCAACACG 59.746 42.308 0.00 0.00 0.00 4.49
1528 3822 7.482169 AGTCAACTAGATTAGGTCATCAACA 57.518 36.000 0.00 0.00 0.00 3.33
1531 3825 7.718334 TCAAGTCAACTAGATTAGGTCATCA 57.282 36.000 0.00 0.00 0.00 3.07
1534 3828 6.377429 ACGATCAAGTCAACTAGATTAGGTCA 59.623 38.462 0.00 0.00 0.00 4.02
1537 3831 6.415280 CGAACGATCAAGTCAACTAGATTAGG 59.585 42.308 0.00 0.00 0.00 2.69
1539 3833 6.127814 ACCGAACGATCAAGTCAACTAGATTA 60.128 38.462 0.00 0.00 0.00 1.75
1545 3843 2.814280 ACCGAACGATCAAGTCAACT 57.186 45.000 0.00 0.00 0.00 3.16
1574 3872 3.896133 CTCCGGCCATGCATGCAC 61.896 66.667 25.37 14.61 0.00 4.57
1600 3898 0.667792 GGAACTCGTCAGCACTCCAC 60.668 60.000 0.00 0.00 0.00 4.02
1602 3900 0.318762 AAGGAACTCGTCAGCACTCC 59.681 55.000 0.00 0.00 38.49 3.85
1603 3901 2.597520 GTAAGGAACTCGTCAGCACTC 58.402 52.381 0.00 0.00 38.49 3.51
1618 3916 2.159572 CCGGATCTGCAAAAACGTAAGG 60.160 50.000 0.00 0.00 46.39 2.69
1717 4015 1.589196 GATGACGGCCAGCGAGTAC 60.589 63.158 2.24 0.00 0.00 2.73
1957 4255 1.002502 GAAGGGGTAGGTTGCGCTT 60.003 57.895 9.73 0.00 0.00 4.68
1963 4261 1.993948 GGAGGCGAAGGGGTAGGTT 60.994 63.158 0.00 0.00 0.00 3.50
2403 4723 2.047274 TCCGGTGCTGCTAGTTGC 60.047 61.111 0.00 0.00 43.25 4.17
2407 4727 1.435515 GACTCTCCGGTGCTGCTAG 59.564 63.158 0.00 0.00 0.00 3.42
2459 4779 3.060940 CCTCATTCATCATCGTTCGTTCG 60.061 47.826 0.00 0.00 0.00 3.95
2466 4786 2.159043 ACGCTTCCTCATTCATCATCGT 60.159 45.455 0.00 0.00 0.00 3.73
2467 4787 2.477825 ACGCTTCCTCATTCATCATCG 58.522 47.619 0.00 0.00 0.00 3.84
2469 4789 5.416952 AGAAAAACGCTTCCTCATTCATCAT 59.583 36.000 0.00 0.00 0.00 2.45
2510 4830 3.148279 ACCCAAACGGCCGCAAAA 61.148 55.556 28.58 0.00 33.26 2.44
2562 4882 0.179150 CTCGTCTGCTCTTCTTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
2570 4890 3.211045 GGTAGAATCTCTCGTCTGCTCT 58.789 50.000 0.00 0.00 0.00 4.09
2601 4921 3.409026 ACAAAGGCTAGAGTTCTGGTG 57.591 47.619 0.00 0.00 0.00 4.17
2602 4922 4.439253 AAACAAAGGCTAGAGTTCTGGT 57.561 40.909 0.00 0.00 0.00 4.00
2603 4923 4.216472 GGAAAACAAAGGCTAGAGTTCTGG 59.784 45.833 0.00 0.00 0.00 3.86
2604 4924 5.066593 AGGAAAACAAAGGCTAGAGTTCTG 58.933 41.667 0.00 0.00 0.00 3.02
2619 4939 9.853177 AAAAGAGAGAGAAAGATTAGGAAAACA 57.147 29.630 0.00 0.00 0.00 2.83
2624 4944 6.437793 ACGGAAAAGAGAGAGAAAGATTAGGA 59.562 38.462 0.00 0.00 0.00 2.94
2625 4945 6.635755 ACGGAAAAGAGAGAGAAAGATTAGG 58.364 40.000 0.00 0.00 0.00 2.69
2629 4949 6.434652 TGAGTACGGAAAAGAGAGAGAAAGAT 59.565 38.462 0.00 0.00 0.00 2.40
2631 4951 6.015027 TGAGTACGGAAAAGAGAGAGAAAG 57.985 41.667 0.00 0.00 0.00 2.62
2634 4954 6.591750 AATTGAGTACGGAAAAGAGAGAGA 57.408 37.500 0.00 0.00 0.00 3.10
2637 4957 9.291664 CTAACTAATTGAGTACGGAAAAGAGAG 57.708 37.037 0.00 0.00 37.44 3.20
2638 4958 7.758528 GCTAACTAATTGAGTACGGAAAAGAGA 59.241 37.037 0.00 0.00 37.44 3.10
2639 4959 7.010275 GGCTAACTAATTGAGTACGGAAAAGAG 59.990 40.741 0.00 0.00 37.44 2.85
2641 4961 6.036844 GGGCTAACTAATTGAGTACGGAAAAG 59.963 42.308 0.00 0.00 37.44 2.27
2646 4966 3.387050 AGGGGCTAACTAATTGAGTACGG 59.613 47.826 0.00 0.00 37.44 4.02
2647 4967 4.341520 AGAGGGGCTAACTAATTGAGTACG 59.658 45.833 0.00 0.00 37.44 3.67
2648 4968 5.873146 AGAGGGGCTAACTAATTGAGTAC 57.127 43.478 0.00 0.00 37.44 2.73
2650 4970 6.886178 TTAAGAGGGGCTAACTAATTGAGT 57.114 37.500 0.00 0.00 41.56 3.41
2651 4971 7.993183 TGATTTAAGAGGGGCTAACTAATTGAG 59.007 37.037 0.00 0.00 0.00 3.02
2652 4972 7.867921 TGATTTAAGAGGGGCTAACTAATTGA 58.132 34.615 0.00 0.00 0.00 2.57
2653 4973 8.519799 TTGATTTAAGAGGGGCTAACTAATTG 57.480 34.615 0.00 0.00 0.00 2.32
2654 4974 9.355916 GATTGATTTAAGAGGGGCTAACTAATT 57.644 33.333 0.00 0.00 0.00 1.40
2655 4975 8.502738 TGATTGATTTAAGAGGGGCTAACTAAT 58.497 33.333 0.00 0.00 0.00 1.73
2656 4976 7.867921 TGATTGATTTAAGAGGGGCTAACTAA 58.132 34.615 0.00 0.00 0.00 2.24
2657 4977 7.446106 TGATTGATTTAAGAGGGGCTAACTA 57.554 36.000 0.00 0.00 0.00 2.24
2659 4979 7.404671 TTTGATTGATTTAAGAGGGGCTAAC 57.595 36.000 0.00 0.00 0.00 2.34
2676 4996 6.423182 TCTTACCAGGGGAGTAATTTGATTG 58.577 40.000 0.00 0.00 0.00 2.67
2680 5000 5.133221 CCATCTTACCAGGGGAGTAATTTG 58.867 45.833 0.00 0.00 0.00 2.32
2712 5032 1.987855 TTCGAAGCGGGATCCAGGT 60.988 57.895 15.23 13.07 0.00 4.00
2753 5080 2.734673 GCGACAGAAGCAGCTTCCG 61.735 63.158 28.34 24.46 40.98 4.30
2759 5086 0.940126 ACACAAAGCGACAGAAGCAG 59.060 50.000 0.00 0.00 37.01 4.24
2784 5112 2.173519 CCACAGCATCCATCCAAAACT 58.826 47.619 0.00 0.00 0.00 2.66
2807 5135 1.941668 GCACTGCTCTTGTACTCCACC 60.942 57.143 0.00 0.00 0.00 4.61
2890 5224 0.250234 TGTGTAGCAGTGCTCCCATC 59.750 55.000 23.64 13.72 40.44 3.51
2891 5225 0.036010 GTGTGTAGCAGTGCTCCCAT 60.036 55.000 23.64 0.00 40.44 4.00
2892 5226 1.371183 GTGTGTAGCAGTGCTCCCA 59.629 57.895 23.64 16.83 40.44 4.37
2893 5227 0.951040 GTGTGTGTAGCAGTGCTCCC 60.951 60.000 23.64 14.22 40.44 4.30
2894 5228 1.284982 CGTGTGTGTAGCAGTGCTCC 61.285 60.000 23.64 11.58 40.44 4.70
2895 5229 0.318699 TCGTGTGTGTAGCAGTGCTC 60.319 55.000 23.64 13.85 40.44 4.26
2896 5230 0.318441 ATCGTGTGTGTAGCAGTGCT 59.682 50.000 23.44 23.44 43.41 4.40
2897 5231 1.990799 TATCGTGTGTGTAGCAGTGC 58.009 50.000 7.13 7.13 0.00 4.40
2898 5232 5.120053 TGAATTTATCGTGTGTGTAGCAGTG 59.880 40.000 0.00 0.00 0.00 3.66
2899 5233 5.234752 TGAATTTATCGTGTGTGTAGCAGT 58.765 37.500 0.00 0.00 0.00 4.40
2900 5234 5.778161 TGAATTTATCGTGTGTGTAGCAG 57.222 39.130 0.00 0.00 0.00 4.24
2901 5235 5.447144 GCATGAATTTATCGTGTGTGTAGCA 60.447 40.000 0.00 0.00 45.27 3.49
2902 5236 4.963953 GCATGAATTTATCGTGTGTGTAGC 59.036 41.667 0.00 0.00 45.27 3.58
2903 5237 5.959527 GTGCATGAATTTATCGTGTGTGTAG 59.040 40.000 0.00 0.00 45.27 2.74
2904 5238 5.445275 CGTGCATGAATTTATCGTGTGTGTA 60.445 40.000 0.00 0.00 45.27 2.90
2905 5239 4.668941 CGTGCATGAATTTATCGTGTGTGT 60.669 41.667 0.00 0.00 45.27 3.72
2906 5240 3.780279 CGTGCATGAATTTATCGTGTGTG 59.220 43.478 0.00 0.00 45.27 3.82
2907 5241 3.682377 TCGTGCATGAATTTATCGTGTGT 59.318 39.130 6.04 0.00 45.27 3.72
2908 5242 4.257536 TCGTGCATGAATTTATCGTGTG 57.742 40.909 6.04 0.00 45.27 3.82
2909 5243 4.811024 AGATCGTGCATGAATTTATCGTGT 59.189 37.500 13.65 0.00 45.27 4.49
2910 5244 5.135330 CAGATCGTGCATGAATTTATCGTG 58.865 41.667 13.65 2.83 46.09 4.35
2911 5245 5.334435 CAGATCGTGCATGAATTTATCGT 57.666 39.130 13.65 0.00 0.00 3.73
2925 5259 2.371923 TTGTCGTGCGCAGATCGTG 61.372 57.895 12.22 0.00 41.07 4.35
2926 5260 2.049526 TTGTCGTGCGCAGATCGT 60.050 55.556 12.22 0.00 41.07 3.73
2927 5261 2.371923 TGTTGTCGTGCGCAGATCG 61.372 57.895 12.22 12.20 42.12 3.69
2928 5262 1.130613 GTGTTGTCGTGCGCAGATC 59.869 57.895 12.22 4.29 0.00 2.75
2929 5263 0.950555 ATGTGTTGTCGTGCGCAGAT 60.951 50.000 12.22 0.00 0.00 2.90
2930 5264 1.556591 GATGTGTTGTCGTGCGCAGA 61.557 55.000 12.22 8.04 0.00 4.26
2931 5265 1.154599 GATGTGTTGTCGTGCGCAG 60.155 57.895 12.22 5.26 0.00 5.18
2932 5266 0.319125 TAGATGTGTTGTCGTGCGCA 60.319 50.000 5.66 5.66 0.00 6.09
2933 5267 0.093026 GTAGATGTGTTGTCGTGCGC 59.907 55.000 0.00 0.00 0.00 6.09
2934 5268 1.124297 GTGTAGATGTGTTGTCGTGCG 59.876 52.381 0.00 0.00 0.00 5.34
2935 5269 1.459592 GGTGTAGATGTGTTGTCGTGC 59.540 52.381 0.00 0.00 0.00 5.34
2936 5270 2.066262 GGGTGTAGATGTGTTGTCGTG 58.934 52.381 0.00 0.00 0.00 4.35
2937 5271 1.968493 AGGGTGTAGATGTGTTGTCGT 59.032 47.619 0.00 0.00 0.00 4.34
2938 5272 2.736721 CAAGGGTGTAGATGTGTTGTCG 59.263 50.000 0.00 0.00 0.00 4.35
2939 5273 3.074412 CCAAGGGTGTAGATGTGTTGTC 58.926 50.000 0.00 0.00 0.00 3.18
2940 5274 2.224769 CCCAAGGGTGTAGATGTGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
2941 5275 2.436417 CCCAAGGGTGTAGATGTGTTG 58.564 52.381 0.00 0.00 0.00 3.33
2942 5276 2.879103 CCCAAGGGTGTAGATGTGTT 57.121 50.000 0.00 0.00 0.00 3.32
2954 5288 1.524008 GAAACGAGGCAACCCAAGGG 61.524 60.000 2.91 2.91 42.03 3.95
2955 5289 1.852067 CGAAACGAGGCAACCCAAGG 61.852 60.000 0.00 0.00 37.17 3.61
2956 5290 1.164041 ACGAAACGAGGCAACCCAAG 61.164 55.000 0.00 0.00 37.17 3.61
2957 5291 0.106335 TACGAAACGAGGCAACCCAA 59.894 50.000 0.00 0.00 37.17 4.12
2958 5292 0.106335 TTACGAAACGAGGCAACCCA 59.894 50.000 0.00 0.00 37.17 4.51
2959 5293 1.228533 TTTACGAAACGAGGCAACCC 58.771 50.000 0.00 0.00 37.17 4.11
2960 5294 2.740447 AGATTTACGAAACGAGGCAACC 59.260 45.455 0.00 0.00 37.17 3.77
2961 5295 3.678548 AGAGATTTACGAAACGAGGCAAC 59.321 43.478 0.00 0.00 0.00 4.17
2962 5296 3.678072 CAGAGATTTACGAAACGAGGCAA 59.322 43.478 0.00 0.00 0.00 4.52
2963 5297 3.250744 CAGAGATTTACGAAACGAGGCA 58.749 45.455 0.00 0.00 0.00 4.75
2964 5298 3.060895 CACAGAGATTTACGAAACGAGGC 59.939 47.826 0.00 0.00 0.00 4.70
2965 5299 3.612860 CCACAGAGATTTACGAAACGAGG 59.387 47.826 0.00 0.00 0.00 4.63
2966 5300 3.060895 GCCACAGAGATTTACGAAACGAG 59.939 47.826 0.00 0.00 0.00 4.18
2967 5301 2.991190 GCCACAGAGATTTACGAAACGA 59.009 45.455 0.00 0.00 0.00 3.85
2968 5302 2.093783 GGCCACAGAGATTTACGAAACG 59.906 50.000 0.00 0.00 0.00 3.60
2969 5303 2.418976 GGGCCACAGAGATTTACGAAAC 59.581 50.000 4.39 0.00 0.00 2.78
2970 5304 2.039216 TGGGCCACAGAGATTTACGAAA 59.961 45.455 0.00 0.00 0.00 3.46
2971 5305 1.626321 TGGGCCACAGAGATTTACGAA 59.374 47.619 0.00 0.00 0.00 3.85
2972 5306 1.271856 TGGGCCACAGAGATTTACGA 58.728 50.000 0.00 0.00 0.00 3.43
2973 5307 2.107950 TTGGGCCACAGAGATTTACG 57.892 50.000 5.23 0.00 0.00 3.18
2974 5308 4.016444 TGATTTGGGCCACAGAGATTTAC 58.984 43.478 5.23 0.00 0.00 2.01
2975 5309 4.314522 TGATTTGGGCCACAGAGATTTA 57.685 40.909 5.23 0.00 0.00 1.40
2976 5310 3.173953 TGATTTGGGCCACAGAGATTT 57.826 42.857 5.23 0.00 0.00 2.17
2977 5311 2.905415 TGATTTGGGCCACAGAGATT 57.095 45.000 5.23 0.00 0.00 2.40
2978 5312 2.024655 ACATGATTTGGGCCACAGAGAT 60.025 45.455 5.23 0.00 0.00 2.75
2979 5313 1.355381 ACATGATTTGGGCCACAGAGA 59.645 47.619 5.23 0.00 0.00 3.10
2980 5314 1.747355 GACATGATTTGGGCCACAGAG 59.253 52.381 5.23 0.86 0.00 3.35
2981 5315 1.838112 GACATGATTTGGGCCACAGA 58.162 50.000 5.23 0.00 0.00 3.41
2982 5316 0.452987 CGACATGATTTGGGCCACAG 59.547 55.000 5.23 0.00 0.00 3.66
2983 5317 0.251121 ACGACATGATTTGGGCCACA 60.251 50.000 5.23 0.00 0.00 4.17
2984 5318 0.171007 CACGACATGATTTGGGCCAC 59.829 55.000 5.23 0.00 0.00 5.01
2985 5319 0.251121 ACACGACATGATTTGGGCCA 60.251 50.000 0.00 0.00 0.00 5.36
2986 5320 0.171007 CACACGACATGATTTGGGCC 59.829 55.000 0.00 0.00 0.00 5.80
2987 5321 0.881118 ACACACGACATGATTTGGGC 59.119 50.000 0.00 0.00 0.00 5.36
2988 5322 1.199789 CCACACACGACATGATTTGGG 59.800 52.381 0.00 0.00 0.00 4.12
2989 5323 2.150390 TCCACACACGACATGATTTGG 58.850 47.619 0.00 0.00 0.00 3.28
2990 5324 3.484065 CGATCCACACACGACATGATTTG 60.484 47.826 0.00 0.00 0.00 2.32
2991 5325 2.672874 CGATCCACACACGACATGATTT 59.327 45.455 0.00 0.00 0.00 2.17
2992 5326 2.270923 CGATCCACACACGACATGATT 58.729 47.619 0.00 0.00 0.00 2.57
2993 5327 1.204704 ACGATCCACACACGACATGAT 59.795 47.619 0.00 0.00 0.00 2.45
2994 5328 0.601057 ACGATCCACACACGACATGA 59.399 50.000 0.00 0.00 0.00 3.07
2995 5329 0.715551 CACGATCCACACACGACATG 59.284 55.000 0.00 0.00 0.00 3.21
2996 5330 1.014044 GCACGATCCACACACGACAT 61.014 55.000 0.00 0.00 0.00 3.06
2997 5331 1.663388 GCACGATCCACACACGACA 60.663 57.895 0.00 0.00 0.00 4.35
2998 5332 1.014044 ATGCACGATCCACACACGAC 61.014 55.000 0.00 0.00 0.00 4.34
2999 5333 1.013524 CATGCACGATCCACACACGA 61.014 55.000 0.00 0.00 0.00 4.35
3000 5334 1.421093 CATGCACGATCCACACACG 59.579 57.895 0.00 0.00 0.00 4.49
3001 5335 1.135315 GCATGCACGATCCACACAC 59.865 57.895 14.21 0.00 0.00 3.82
3002 5336 1.302351 TGCATGCACGATCCACACA 60.302 52.632 18.46 0.00 0.00 3.72
3003 5337 1.135315 GTGCATGCACGATCCACAC 59.865 57.895 33.20 9.23 37.19 3.82
3004 5338 3.577229 GTGCATGCACGATCCACA 58.423 55.556 33.20 0.00 37.19 4.17
3020 5354 2.738521 GCTGTGCACACGATCCGT 60.739 61.111 17.42 0.00 42.36 4.69
3021 5355 2.738139 TGCTGTGCACACGATCCG 60.738 61.111 17.42 6.27 31.71 4.18
3030 5364 1.737735 CGATCGGAAGTGCTGTGCA 60.738 57.895 7.38 0.00 35.60 4.57
3031 5365 2.456119 CCGATCGGAAGTGCTGTGC 61.456 63.158 30.62 0.00 37.50 4.57
3032 5366 1.215382 TCCGATCGGAAGTGCTGTG 59.785 57.895 33.96 4.28 42.05 3.66
3033 5367 3.694746 TCCGATCGGAAGTGCTGT 58.305 55.556 33.96 0.00 42.05 4.40
3042 5376 1.474478 CCCTACTCATCATCCGATCGG 59.526 57.143 28.62 28.62 0.00 4.18
3043 5377 1.474478 CCCCTACTCATCATCCGATCG 59.526 57.143 8.51 8.51 0.00 3.69
3044 5378 1.827969 CCCCCTACTCATCATCCGATC 59.172 57.143 0.00 0.00 0.00 3.69
3045 5379 1.433199 TCCCCCTACTCATCATCCGAT 59.567 52.381 0.00 0.00 0.00 4.18
3046 5380 0.857675 TCCCCCTACTCATCATCCGA 59.142 55.000 0.00 0.00 0.00 4.55
3047 5381 1.717032 TTCCCCCTACTCATCATCCG 58.283 55.000 0.00 0.00 0.00 4.18
3048 5382 2.234908 CGATTCCCCCTACTCATCATCC 59.765 54.545 0.00 0.00 0.00 3.51
3049 5383 2.234908 CCGATTCCCCCTACTCATCATC 59.765 54.545 0.00 0.00 0.00 2.92
3050 5384 2.260822 CCGATTCCCCCTACTCATCAT 58.739 52.381 0.00 0.00 0.00 2.45
3051 5385 1.062428 ACCGATTCCCCCTACTCATCA 60.062 52.381 0.00 0.00 0.00 3.07
3099 5434 0.179073 AAGCCTACACTATGCCGCAG 60.179 55.000 0.00 0.00 0.00 5.18
3100 5435 0.251916 AAAGCCTACACTATGCCGCA 59.748 50.000 0.00 0.00 0.00 5.69
3101 5436 0.657840 CAAAGCCTACACTATGCCGC 59.342 55.000 0.00 0.00 0.00 6.53
3102 5437 1.299541 CCAAAGCCTACACTATGCCG 58.700 55.000 0.00 0.00 0.00 5.69
3106 5441 3.264450 AGCAAGACCAAAGCCTACACTAT 59.736 43.478 0.00 0.00 0.00 2.12
3108 5443 1.421646 AGCAAGACCAAAGCCTACACT 59.578 47.619 0.00 0.00 0.00 3.55
3123 5458 2.507992 CCGTGCCTCGAGAGCAAG 60.508 66.667 24.11 24.13 43.02 4.01
3153 5488 4.479993 CAGCGGCCAGAGGGAAGG 62.480 72.222 2.24 0.00 35.59 3.46
3175 5510 4.785453 CACCTCCCGAAGCCCAGC 62.785 72.222 0.00 0.00 0.00 4.85
3176 5511 4.101448 CCACCTCCCGAAGCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
3180 5515 1.153147 GGATTCCACCTCCCGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
3184 5519 1.070758 CTACATGGATTCCACCTCCCG 59.929 57.143 7.76 0.00 35.80 5.14
3215 5550 2.504367 GTGGTGTCACTTTGGCTATGT 58.496 47.619 2.35 0.00 40.58 2.29
3216 5551 1.812571 GGTGGTGTCACTTTGGCTATG 59.187 52.381 2.35 0.00 43.17 2.23
3217 5552 1.271926 GGGTGGTGTCACTTTGGCTAT 60.272 52.381 2.35 0.00 43.17 2.97
3218 5553 0.109723 GGGTGGTGTCACTTTGGCTA 59.890 55.000 2.35 0.00 43.17 3.93
3219 5554 1.152756 GGGTGGTGTCACTTTGGCT 60.153 57.895 2.35 0.00 43.17 4.75
3220 5555 2.551912 CGGGTGGTGTCACTTTGGC 61.552 63.158 2.35 0.00 43.17 4.52
3238 5573 0.603065 AATGAGAACAAAAGCCGGCC 59.397 50.000 26.15 5.49 0.00 6.13
3282 5620 3.191371 GTGTTGTTTCCATCCATGTCCTC 59.809 47.826 0.00 0.00 0.00 3.71
3345 5707 1.000955 CATATAAGAACGGAGCGGGCT 59.999 52.381 0.00 0.00 0.00 5.19
3346 5708 1.429463 CATATAAGAACGGAGCGGGC 58.571 55.000 0.00 0.00 0.00 6.13
3349 5711 2.440539 AGCCATATAAGAACGGAGCG 57.559 50.000 0.00 0.00 0.00 5.03
3350 5712 3.728845 TCAAGCCATATAAGAACGGAGC 58.271 45.455 0.00 0.00 0.00 4.70
3351 5713 3.743396 GCTCAAGCCATATAAGAACGGAG 59.257 47.826 0.00 0.00 34.31 4.63
3352 5714 3.728845 GCTCAAGCCATATAAGAACGGA 58.271 45.455 0.00 0.00 34.31 4.69
3353 5715 2.476619 CGCTCAAGCCATATAAGAACGG 59.523 50.000 0.00 0.00 37.91 4.44
3354 5716 2.476619 CCGCTCAAGCCATATAAGAACG 59.523 50.000 0.00 0.00 37.91 3.95
3355 5717 3.495001 GTCCGCTCAAGCCATATAAGAAC 59.505 47.826 0.00 0.00 37.91 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.