Multiple sequence alignment - TraesCS3A01G427400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G427400 chr3A 100.000 3353 0 0 1 3353 670862103 670858751 0.000000e+00 6192.0
1 TraesCS3A01G427400 chr3A 83.750 480 68 5 1859 2333 671660768 671660294 2.370000e-121 446.0
2 TraesCS3A01G427400 chr3A 86.243 378 50 2 1305 1681 671661156 671660780 3.110000e-110 409.0
3 TraesCS3A01G427400 chr3A 80.388 515 93 4 1831 2341 670834155 670833645 5.250000e-103 385.0
4 TraesCS3A01G427400 chr3A 85.106 376 52 3 1311 1684 670834595 670834222 6.790000e-102 381.0
5 TraesCS3A01G427400 chr3A 92.857 70 2 2 285 353 158405996 158406063 7.660000e-17 99.0
6 TraesCS3A01G427400 chr3D 90.712 1335 68 22 367 1684 535669856 535668561 0.000000e+00 1727.0
7 TraesCS3A01G427400 chr3D 92.175 639 46 1 1801 2439 535668504 535667870 0.000000e+00 900.0
8 TraesCS3A01G427400 chr3D 85.462 509 39 15 2494 2972 535667870 535667367 6.460000e-137 497.0
9 TraesCS3A01G427400 chr3D 83.858 508 75 5 1846 2351 536164576 536165078 8.420000e-131 477.0
10 TraesCS3A01G427400 chr3D 86.787 333 32 3 44 364 535670240 535669908 8.840000e-96 361.0
11 TraesCS3A01G427400 chr3D 84.874 357 52 2 1324 1679 536164220 536164575 3.180000e-95 359.0
12 TraesCS3A01G427400 chr3D 81.842 380 61 7 1309 1684 536206742 536207117 2.510000e-81 313.0
13 TraesCS3A01G427400 chr3D 96.319 163 6 0 2984 3146 61682283 61682445 5.510000e-68 268.0
14 TraesCS3A01G427400 chr3D 96.319 163 6 0 2984 3146 569577328 569577166 5.510000e-68 268.0
15 TraesCS3A01G427400 chr3D 97.403 77 1 1 1714 1790 535668559 535668484 2.710000e-26 130.0
16 TraesCS3A01G427400 chr3D 86.813 91 8 3 163 250 497511592 497511503 7.660000e-17 99.0
17 TraesCS3A01G427400 chr3B 91.026 1248 75 17 547 1789 707242575 707241360 0.000000e+00 1650.0
18 TraesCS3A01G427400 chr3B 89.356 1165 84 10 1801 2937 707241379 707240227 0.000000e+00 1428.0
19 TraesCS3A01G427400 chr3B 83.936 498 73 5 1859 2354 708310768 708310276 1.410000e-128 470.0
20 TraesCS3A01G427400 chr3B 87.366 372 42 4 1314 1681 708311150 708310780 4.000000e-114 422.0
21 TraesCS3A01G427400 chr3B 81.818 506 82 6 1841 2341 707128241 707127741 1.860000e-112 416.0
22 TraesCS3A01G427400 chr3B 80.134 448 86 3 1824 2270 708416207 708416652 6.930000e-87 331.0
23 TraesCS3A01G427400 chr3B 81.778 225 24 8 3146 3353 707240104 707239880 4.450000e-39 172.0
24 TraesCS3A01G427400 chr1B 81.414 382 54 12 1311 1679 566983453 566983076 2.530000e-76 296.0
25 TraesCS3A01G427400 chr1D 80.315 381 60 11 1311 1679 419999949 419999572 1.190000e-69 274.0
26 TraesCS3A01G427400 chr1D 83.951 81 7 6 163 241 226470904 226470828 4.640000e-09 73.1
27 TraesCS3A01G427400 chr6B 95.808 167 7 0 2980 3146 144269664 144269498 1.530000e-68 270.0
28 TraesCS3A01G427400 chr6B 97.059 34 1 0 195 228 692059318 692059351 1.300000e-04 58.4
29 TraesCS3A01G427400 chr6B 100.000 28 0 0 201 228 691965501 691965474 6.000000e-03 52.8
30 TraesCS3A01G427400 chr6D 95.808 167 6 1 2981 3146 454231871 454232037 5.510000e-68 268.0
31 TraesCS3A01G427400 chr6D 95.732 164 7 0 2983 3146 90890281 90890444 7.130000e-67 265.0
32 TraesCS3A01G427400 chr7B 95.732 164 7 0 2984 3147 115373865 115374028 7.130000e-67 265.0
33 TraesCS3A01G427400 chr4D 95.210 167 8 0 2980 3146 450280878 450281044 7.130000e-67 265.0
34 TraesCS3A01G427400 chr7D 95.181 166 8 0 2982 3147 71312437 71312272 2.570000e-66 263.0
35 TraesCS3A01G427400 chr5B 91.444 187 12 4 2962 3146 646470145 646470329 1.540000e-63 254.0
36 TraesCS3A01G427400 chr1A 92.593 54 3 1 197 249 293739367 293739314 3.590000e-10 76.8
37 TraesCS3A01G427400 chr2B 82.143 84 12 2 162 245 638269500 638269420 6.000000e-08 69.4
38 TraesCS3A01G427400 chrUn 94.118 34 2 0 195 228 311081170 311081203 6.000000e-03 52.8
39 TraesCS3A01G427400 chrUn 94.118 34 2 0 195 228 339829840 339829873 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G427400 chr3A 670858751 670862103 3352 True 6192.000000 6192 100.000000 1 3353 1 chr3A.!!$R1 3352
1 TraesCS3A01G427400 chr3A 671660294 671661156 862 True 427.500000 446 84.996500 1305 2333 2 chr3A.!!$R3 1028
2 TraesCS3A01G427400 chr3A 670833645 670834595 950 True 383.000000 385 82.747000 1311 2341 2 chr3A.!!$R2 1030
3 TraesCS3A01G427400 chr3D 535667367 535670240 2873 True 723.000000 1727 90.507800 44 2972 5 chr3D.!!$R3 2928
4 TraesCS3A01G427400 chr3D 536164220 536165078 858 False 418.000000 477 84.366000 1324 2351 2 chr3D.!!$F3 1027
5 TraesCS3A01G427400 chr3B 707239880 707242575 2695 True 1083.333333 1650 87.386667 547 3353 3 chr3B.!!$R2 2806
6 TraesCS3A01G427400 chr3B 708310276 708311150 874 True 446.000000 470 85.651000 1314 2354 2 chr3B.!!$R3 1040
7 TraesCS3A01G427400 chr3B 707127741 707128241 500 True 416.000000 416 81.818000 1841 2341 1 chr3B.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 863 0.169009 GACATCTTCCTTGCGTTGCC 59.831 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2589 0.108615 CGCTCTGGAGTCGGAACAAT 60.109 55.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.074653 ACATGTTCCCTAAGTAGAAGTTTCA 57.925 36.000 0.00 0.00 0.00 2.69
30 31 7.690256 ACATGTTCCCTAAGTAGAAGTTTCAT 58.310 34.615 0.00 0.00 0.00 2.57
31 32 8.164070 ACATGTTCCCTAAGTAGAAGTTTCATT 58.836 33.333 0.00 0.00 0.00 2.57
32 33 9.667107 CATGTTCCCTAAGTAGAAGTTTCATTA 57.333 33.333 0.00 0.00 0.00 1.90
64 65 9.571810 TCAGTTATTTGCATGCTACATAAAAAG 57.428 29.630 20.33 10.70 0.00 2.27
66 67 9.573133 AGTTATTTGCATGCTACATAAAAAGAC 57.427 29.630 20.33 11.67 0.00 3.01
71 72 8.830201 TTGCATGCTACATAAAAAGACAAAAT 57.170 26.923 20.33 0.00 0.00 1.82
89 91 6.475402 GACAAAATAATTTGGCCCGAATACAG 59.525 38.462 0.00 0.00 46.92 2.74
90 92 6.337356 CAAAATAATTTGGCCCGAATACAGT 58.663 36.000 0.00 0.00 41.81 3.55
140 142 8.766000 TGCATTAGTCTTTTCTTTGTATACGA 57.234 30.769 0.00 0.00 0.00 3.43
258 261 6.897966 ACGGAGGGAGTATATCACATATGAAT 59.102 38.462 10.38 5.23 38.69 2.57
270 273 5.804639 TCACATATGAATATAGGGTGTGGC 58.195 41.667 10.38 0.00 36.89 5.01
273 276 7.236640 TCACATATGAATATAGGGTGTGGCTAA 59.763 37.037 10.38 0.00 36.89 3.09
278 281 6.378745 TGAATATAGGGTGTGGCTAAGTCTA 58.621 40.000 0.00 0.00 0.00 2.59
304 317 3.738281 CGAACCAAGTCTCAGTCAAGTGT 60.738 47.826 0.00 0.00 0.00 3.55
364 377 9.545105 AAAAGAAAAATTGCATGTATCTCAACA 57.455 25.926 0.00 0.00 0.00 3.33
365 378 9.545105 AAAGAAAAATTGCATGTATCTCAACAA 57.455 25.926 0.00 0.00 32.02 2.83
373 435 4.805719 GCATGTATCTCAACAATCGACTGA 59.194 41.667 0.00 0.00 32.02 3.41
377 439 4.790765 ATCTCAACAATCGACTGAGACA 57.209 40.909 16.27 0.00 46.17 3.41
384 446 4.428209 ACAATCGACTGAGACATAGCAAG 58.572 43.478 0.00 0.00 0.00 4.01
387 449 3.348119 TCGACTGAGACATAGCAAGACT 58.652 45.455 0.00 0.00 0.00 3.24
479 544 6.439599 AGACGTAGGAAATGTATTCGATGAG 58.560 40.000 0.00 0.00 0.00 2.90
484 549 5.989477 AGGAAATGTATTCGATGAGAACCA 58.011 37.500 0.00 0.00 42.39 3.67
522 587 3.443045 CCGGCCACCATTGCACTC 61.443 66.667 2.24 0.00 0.00 3.51
781 858 2.032030 ACGTTTTGACATCTTCCTTGCG 60.032 45.455 0.00 0.00 0.00 4.85
782 859 2.032030 CGTTTTGACATCTTCCTTGCGT 60.032 45.455 0.00 0.00 0.00 5.24
783 860 3.548014 CGTTTTGACATCTTCCTTGCGTT 60.548 43.478 0.00 0.00 0.00 4.84
784 861 3.624326 TTTGACATCTTCCTTGCGTTG 57.376 42.857 0.00 0.00 0.00 4.10
785 862 0.874390 TGACATCTTCCTTGCGTTGC 59.126 50.000 0.00 0.00 0.00 4.17
786 863 0.169009 GACATCTTCCTTGCGTTGCC 59.831 55.000 0.00 0.00 0.00 4.52
787 864 0.250901 ACATCTTCCTTGCGTTGCCT 60.251 50.000 0.00 0.00 0.00 4.75
788 865 0.883833 CATCTTCCTTGCGTTGCCTT 59.116 50.000 0.00 0.00 0.00 4.35
789 866 0.883833 ATCTTCCTTGCGTTGCCTTG 59.116 50.000 0.00 0.00 0.00 3.61
790 867 1.372128 CTTCCTTGCGTTGCCTTGC 60.372 57.895 0.00 0.00 0.00 4.01
845 922 4.229096 CCACATCATTCAAAACCAACGAG 58.771 43.478 0.00 0.00 0.00 4.18
859 936 0.246360 AACGAGTGCACATGGATCGA 59.754 50.000 26.15 0.00 37.16 3.59
874 951 2.286891 GGATCGACGTACCTTCTGCTAC 60.287 54.545 0.00 0.00 0.00 3.58
974 1051 2.288273 GCAGTACCATTAGCCTCTACCG 60.288 54.545 0.00 0.00 0.00 4.02
975 1052 2.957006 CAGTACCATTAGCCTCTACCGT 59.043 50.000 0.00 0.00 0.00 4.83
976 1053 2.957006 AGTACCATTAGCCTCTACCGTG 59.043 50.000 0.00 0.00 0.00 4.94
977 1054 0.464452 ACCATTAGCCTCTACCGTGC 59.536 55.000 0.00 0.00 0.00 5.34
978 1055 0.464036 CCATTAGCCTCTACCGTGCA 59.536 55.000 0.00 0.00 0.00 4.57
979 1056 1.134521 CCATTAGCCTCTACCGTGCAA 60.135 52.381 0.00 0.00 0.00 4.08
982 1059 0.815734 TAGCCTCTACCGTGCAAGTC 59.184 55.000 0.00 0.00 0.00 3.01
983 1060 1.448013 GCCTCTACCGTGCAAGTCC 60.448 63.158 0.00 0.00 0.00 3.85
984 1061 1.972198 CCTCTACCGTGCAAGTCCA 59.028 57.895 0.00 0.00 0.00 4.02
985 1062 0.389948 CCTCTACCGTGCAAGTCCAC 60.390 60.000 0.00 0.00 0.00 4.02
1065 1146 3.068691 TCGGCCTCGTTCCTCCTG 61.069 66.667 0.00 0.00 37.69 3.86
1103 1184 2.043450 CCTGCTCCTCCTCCTCGT 60.043 66.667 0.00 0.00 0.00 4.18
1104 1185 2.124693 CCTGCTCCTCCTCCTCGTC 61.125 68.421 0.00 0.00 0.00 4.20
1222 1303 1.332195 GGAAAAGGTTTGCCTGCTCT 58.668 50.000 0.00 0.00 46.33 4.09
1437 1523 1.107538 CCTCCTCGACCTATTCCGCA 61.108 60.000 0.00 0.00 0.00 5.69
1472 1558 2.892425 GAGGGGATCGCGCACTTG 60.892 66.667 8.75 0.00 0.00 3.16
1598 1684 2.556287 GCCAACGGCTTCTTCACG 59.444 61.111 0.00 0.00 46.69 4.35
1635 1721 2.203983 TCTGGGCCAAGCTCTCCA 60.204 61.111 8.04 0.00 0.00 3.86
1683 1769 4.990426 GCTACAACTACCTTTTCACCGTAA 59.010 41.667 0.00 0.00 0.00 3.18
1684 1770 5.640783 GCTACAACTACCTTTTCACCGTAAT 59.359 40.000 0.00 0.00 0.00 1.89
1685 1771 5.934935 ACAACTACCTTTTCACCGTAATG 57.065 39.130 0.00 0.00 0.00 1.90
1689 1775 2.433436 ACCTTTTCACCGTAATGAGCC 58.567 47.619 0.00 0.00 0.00 4.70
1700 1786 0.249615 TAATGAGCCAGCTAGCTGCG 60.250 55.000 34.82 27.65 45.15 5.18
1765 1851 6.146898 ACAAGTGAACCAAAATGTAATACGC 58.853 36.000 0.00 0.00 0.00 4.42
1767 1853 6.569179 AGTGAACCAAAATGTAATACGCTT 57.431 33.333 0.00 0.00 0.00 4.68
1768 1854 6.608610 AGTGAACCAAAATGTAATACGCTTC 58.391 36.000 0.00 0.00 0.00 3.86
1769 1855 6.205853 AGTGAACCAAAATGTAATACGCTTCA 59.794 34.615 0.00 0.00 0.00 3.02
1770 1856 6.858993 GTGAACCAAAATGTAATACGCTTCAA 59.141 34.615 0.00 0.00 0.00 2.69
1771 1857 7.380065 GTGAACCAAAATGTAATACGCTTCAAA 59.620 33.333 0.00 0.00 0.00 2.69
1772 1858 8.085296 TGAACCAAAATGTAATACGCTTCAAAT 58.915 29.630 0.00 0.00 0.00 2.32
1773 1859 9.562583 GAACCAAAATGTAATACGCTTCAAATA 57.437 29.630 0.00 0.00 0.00 1.40
2108 2200 2.031516 CCGCTGGAGAGTTGCACAG 61.032 63.158 0.00 0.00 0.00 3.66
2174 2266 3.575506 TCCATGGCAAGATGGACAC 57.424 52.632 6.96 0.00 45.85 3.67
2290 2386 0.105039 GGTGATACCGCTGGAGAAGG 59.895 60.000 1.50 0.00 0.00 3.46
2311 2407 1.152525 AGTCACGAGTCCAGGTGGT 60.153 57.895 0.00 0.00 34.93 4.16
2346 2442 2.433446 GAGGCATCGATGGGGCAT 59.567 61.111 26.00 10.32 0.00 4.40
2372 2468 6.812160 CGCTAACTATTGGAGTATACAATCCC 59.188 42.308 5.50 1.56 37.44 3.85
2439 2586 0.766674 TAGGGCTGGCGGTCCAATAT 60.767 55.000 21.08 0.00 43.45 1.28
2440 2587 0.766674 AGGGCTGGCGGTCCAATATA 60.767 55.000 21.08 0.00 43.45 0.86
2441 2588 0.328258 GGGCTGGCGGTCCAATATAT 59.672 55.000 13.27 0.00 42.91 0.86
2442 2589 1.557832 GGGCTGGCGGTCCAATATATA 59.442 52.381 13.27 0.00 42.91 0.86
2443 2590 2.172717 GGGCTGGCGGTCCAATATATAT 59.827 50.000 13.27 0.00 42.91 0.86
2444 2591 3.371595 GGGCTGGCGGTCCAATATATATT 60.372 47.826 13.27 1.91 42.91 1.28
2445 2592 3.627577 GGCTGGCGGTCCAATATATATTG 59.372 47.826 23.28 23.28 42.91 1.90
2446 2593 4.261801 GCTGGCGGTCCAATATATATTGT 58.738 43.478 26.36 0.00 42.91 2.71
2447 2594 4.700213 GCTGGCGGTCCAATATATATTGTT 59.300 41.667 26.36 0.00 42.91 2.83
2448 2595 5.163754 GCTGGCGGTCCAATATATATTGTTC 60.164 44.000 26.36 19.66 42.91 3.18
2449 2596 5.250200 TGGCGGTCCAATATATATTGTTCC 58.750 41.667 26.36 24.31 41.04 3.62
2454 2601 7.829378 GGTCCAATATATATTGTTCCGACTC 57.171 40.000 26.36 17.45 41.04 3.36
2455 2602 6.817140 GGTCCAATATATATTGTTCCGACTCC 59.183 42.308 26.36 14.58 41.04 3.85
2456 2603 7.383687 GTCCAATATATATTGTTCCGACTCCA 58.616 38.462 26.36 1.12 41.04 3.86
2457 2604 7.545965 GTCCAATATATATTGTTCCGACTCCAG 59.454 40.741 26.36 11.91 41.04 3.86
2458 2605 7.453439 TCCAATATATATTGTTCCGACTCCAGA 59.547 37.037 26.36 13.54 41.04 3.86
2459 2606 7.761704 CCAATATATATTGTTCCGACTCCAGAG 59.238 40.741 26.36 8.67 41.04 3.35
2460 2607 2.961526 TATTGTTCCGACTCCAGAGC 57.038 50.000 0.00 0.00 0.00 4.09
2461 2608 0.108615 ATTGTTCCGACTCCAGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
2462 2609 1.461091 TTGTTCCGACTCCAGAGCGT 61.461 55.000 9.50 0.00 0.00 5.07
2463 2610 0.607217 TGTTCCGACTCCAGAGCGTA 60.607 55.000 9.50 0.00 0.00 4.42
2464 2611 0.179169 GTTCCGACTCCAGAGCGTAC 60.179 60.000 9.50 0.00 0.00 3.67
2465 2612 1.642037 TTCCGACTCCAGAGCGTACG 61.642 60.000 11.84 11.84 0.00 3.67
2466 2613 2.104859 CCGACTCCAGAGCGTACGA 61.105 63.158 21.65 0.00 0.00 3.43
2467 2614 1.060622 CGACTCCAGAGCGTACGAC 59.939 63.158 21.65 12.05 0.00 4.34
2468 2615 1.632948 CGACTCCAGAGCGTACGACA 61.633 60.000 21.65 0.00 0.00 4.35
2469 2616 0.733729 GACTCCAGAGCGTACGACAT 59.266 55.000 21.65 3.23 0.00 3.06
2470 2617 0.452184 ACTCCAGAGCGTACGACATG 59.548 55.000 21.65 12.85 0.00 3.21
2471 2618 0.867753 CTCCAGAGCGTACGACATGC 60.868 60.000 21.65 0.00 39.67 4.06
2472 2619 1.153842 CCAGAGCGTACGACATGCA 60.154 57.895 21.65 0.00 42.04 3.96
2473 2620 1.142185 CCAGAGCGTACGACATGCAG 61.142 60.000 21.65 1.01 42.04 4.41
2474 2621 1.517257 AGAGCGTACGACATGCAGC 60.517 57.895 21.65 0.00 42.04 5.25
2475 2622 1.517257 GAGCGTACGACATGCAGCT 60.517 57.895 21.65 3.00 42.04 4.24
2476 2623 0.248498 GAGCGTACGACATGCAGCTA 60.248 55.000 21.65 0.00 42.04 3.32
2477 2624 0.385751 AGCGTACGACATGCAGCTAT 59.614 50.000 21.65 0.00 42.04 2.97
2478 2625 1.202417 AGCGTACGACATGCAGCTATT 60.202 47.619 21.65 0.00 42.04 1.73
2479 2626 2.034179 AGCGTACGACATGCAGCTATTA 59.966 45.455 21.65 0.00 42.04 0.98
2480 2627 2.405357 GCGTACGACATGCAGCTATTAG 59.595 50.000 21.65 0.00 39.15 1.73
2481 2628 3.852205 GCGTACGACATGCAGCTATTAGA 60.852 47.826 21.65 0.00 39.15 2.10
2482 2629 4.287720 CGTACGACATGCAGCTATTAGAA 58.712 43.478 10.44 0.00 0.00 2.10
2483 2630 4.738252 CGTACGACATGCAGCTATTAGAAA 59.262 41.667 10.44 0.00 0.00 2.52
2484 2631 5.402568 CGTACGACATGCAGCTATTAGAAAT 59.597 40.000 10.44 0.00 0.00 2.17
2485 2632 5.663795 ACGACATGCAGCTATTAGAAATG 57.336 39.130 0.00 0.00 0.00 2.32
2486 2633 4.024556 ACGACATGCAGCTATTAGAAATGC 60.025 41.667 0.00 2.43 37.40 3.56
2487 2634 4.612259 CGACATGCAGCTATTAGAAATGCC 60.612 45.833 11.23 0.02 36.04 4.40
2488 2635 3.251729 ACATGCAGCTATTAGAAATGCCG 59.748 43.478 11.23 7.00 36.04 5.69
2489 2636 2.221169 TGCAGCTATTAGAAATGCCGG 58.779 47.619 0.00 0.00 36.04 6.13
2490 2637 2.222027 GCAGCTATTAGAAATGCCGGT 58.778 47.619 1.90 0.00 0.00 5.28
2491 2638 3.181459 TGCAGCTATTAGAAATGCCGGTA 60.181 43.478 1.90 0.00 36.04 4.02
2492 2639 3.433615 GCAGCTATTAGAAATGCCGGTAG 59.566 47.826 1.90 0.00 0.00 3.18
2493 2640 4.799586 GCAGCTATTAGAAATGCCGGTAGA 60.800 45.833 1.90 0.00 0.00 2.59
2541 2688 1.066430 GGGCAAGTGAGACGATAACCA 60.066 52.381 0.00 0.00 0.00 3.67
2543 2690 2.611971 GGCAAGTGAGACGATAACCACA 60.612 50.000 0.00 0.00 32.35 4.17
2579 2726 2.542020 TGATGTGCTCTCGGTTTGAA 57.458 45.000 0.00 0.00 0.00 2.69
2580 2727 2.143122 TGATGTGCTCTCGGTTTGAAC 58.857 47.619 0.00 0.00 0.00 3.18
2593 2740 6.816640 TCTCGGTTTGAACTTATACTGGAATG 59.183 38.462 0.00 0.00 0.00 2.67
2628 2796 4.448732 TGCATATCAACCGAAATGAGATCG 59.551 41.667 0.00 0.00 39.92 3.69
2691 2859 9.977762 CAAAAGTAAGGTGGTACGTTATTATTC 57.022 33.333 0.00 0.00 32.11 1.75
2697 2865 7.844493 AGGTGGTACGTTATTATTCCATCTA 57.156 36.000 0.00 0.00 35.08 1.98
2717 2885 6.817765 TCTACATTCTTGAAACCCATCAAC 57.182 37.500 0.00 0.00 35.55 3.18
2726 2897 7.441017 TCTTGAAACCCATCAACCAAAAATAG 58.559 34.615 0.00 0.00 35.55 1.73
2734 2905 7.122204 ACCCATCAACCAAAAATAGCTAACTAC 59.878 37.037 0.00 0.00 0.00 2.73
2740 2911 7.683437 ACCAAAAATAGCTAACTACACTTCC 57.317 36.000 0.00 0.00 0.00 3.46
2812 2987 4.113354 GACAGGCTAATAGTTCCGAACTG 58.887 47.826 21.78 7.82 42.84 3.16
2816 2991 4.098196 AGGCTAATAGTTCCGAACTGAGAC 59.902 45.833 21.78 17.22 42.84 3.36
2820 2995 6.035112 GCTAATAGTTCCGAACTGAGACTTTG 59.965 42.308 21.78 10.12 42.84 2.77
2825 3000 4.471904 TCCGAACTGAGACTTTGCATAT 57.528 40.909 0.00 0.00 0.00 1.78
2842 3019 4.202295 TGCATATTGAGGGCAAACAAAACA 60.202 37.500 0.00 0.00 37.59 2.83
2955 3211 7.248976 TGATATATGTCAGGTCTAGGGTTGAT 58.751 38.462 0.00 0.00 0.00 2.57
2965 3221 3.031013 TCTAGGGTTGATCTCGCATGAA 58.969 45.455 0.00 0.00 0.00 2.57
2969 3225 2.292267 GGTTGATCTCGCATGAACCAT 58.708 47.619 9.63 0.00 36.79 3.55
2978 3234 2.971997 CATGAACCATGCATGCTGC 58.028 52.632 21.69 7.14 45.29 5.25
2979 3235 0.529773 CATGAACCATGCATGCTGCC 60.530 55.000 21.69 9.93 44.23 4.85
2981 3237 0.973496 TGAACCATGCATGCTGCCAT 60.973 50.000 21.69 0.02 44.23 4.40
2990 3246 2.048444 CATGCTGCCATGTACTTCCT 57.952 50.000 0.00 0.00 43.07 3.36
2991 3247 1.945394 CATGCTGCCATGTACTTCCTC 59.055 52.381 0.00 0.00 43.07 3.71
2992 3248 0.253044 TGCTGCCATGTACTTCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
2993 3249 0.811616 GCTGCCATGTACTTCCTCCG 60.812 60.000 0.00 0.00 0.00 4.63
2994 3250 0.537188 CTGCCATGTACTTCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
2995 3251 0.981183 TGCCATGTACTTCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
2996 3252 1.066430 TGCCATGTACTTCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2997 3253 1.742750 GCCATGTACTTCCTCCGTTCC 60.743 57.143 0.00 0.00 0.00 3.62
2998 3254 1.831736 CCATGTACTTCCTCCGTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
2999 3255 3.028850 CCATGTACTTCCTCCGTTCCTA 58.971 50.000 0.00 0.00 0.00 2.94
3000 3256 3.449737 CCATGTACTTCCTCCGTTCCTAA 59.550 47.826 0.00 0.00 0.00 2.69
3001 3257 4.081309 CCATGTACTTCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
3002 3258 5.396436 CCATGTACTTCCTCCGTTCCTAAAT 60.396 44.000 0.00 0.00 0.00 1.40
3003 3259 5.080969 TGTACTTCCTCCGTTCCTAAATG 57.919 43.478 0.00 0.00 0.00 2.32
3004 3260 4.529377 TGTACTTCCTCCGTTCCTAAATGT 59.471 41.667 0.00 0.00 0.00 2.71
3005 3261 5.716228 TGTACTTCCTCCGTTCCTAAATGTA 59.284 40.000 0.00 0.00 0.00 2.29
3006 3262 5.952347 ACTTCCTCCGTTCCTAAATGTAT 57.048 39.130 0.00 0.00 0.00 2.29
3007 3263 5.671493 ACTTCCTCCGTTCCTAAATGTATG 58.329 41.667 0.00 0.00 0.00 2.39
3008 3264 5.189145 ACTTCCTCCGTTCCTAAATGTATGT 59.811 40.000 0.00 0.00 0.00 2.29
3009 3265 5.272283 TCCTCCGTTCCTAAATGTATGTC 57.728 43.478 0.00 0.00 0.00 3.06
3010 3266 4.960469 TCCTCCGTTCCTAAATGTATGTCT 59.040 41.667 0.00 0.00 0.00 3.41
3011 3267 5.424252 TCCTCCGTTCCTAAATGTATGTCTT 59.576 40.000 0.00 0.00 0.00 3.01
3012 3268 6.070424 TCCTCCGTTCCTAAATGTATGTCTTT 60.070 38.462 0.00 0.00 0.00 2.52
3013 3269 6.037172 CCTCCGTTCCTAAATGTATGTCTTTG 59.963 42.308 0.00 0.00 0.00 2.77
3014 3270 6.469410 TCCGTTCCTAAATGTATGTCTTTGT 58.531 36.000 0.00 0.00 0.00 2.83
3015 3271 7.613585 TCCGTTCCTAAATGTATGTCTTTGTA 58.386 34.615 0.00 0.00 0.00 2.41
3016 3272 7.762615 TCCGTTCCTAAATGTATGTCTTTGTAG 59.237 37.037 0.00 0.00 0.00 2.74
3017 3273 7.762615 CCGTTCCTAAATGTATGTCTTTGTAGA 59.237 37.037 0.00 0.00 0.00 2.59
3018 3274 8.808529 CGTTCCTAAATGTATGTCTTTGTAGAG 58.191 37.037 0.00 0.00 0.00 2.43
3019 3275 9.871238 GTTCCTAAATGTATGTCTTTGTAGAGA 57.129 33.333 0.00 0.00 0.00 3.10
3025 3281 8.723942 AATGTATGTCTTTGTAGAGATTCCAC 57.276 34.615 0.00 0.00 36.02 4.02
3026 3282 7.482169 TGTATGTCTTTGTAGAGATTCCACT 57.518 36.000 0.00 0.00 36.02 4.00
3027 3283 8.589701 TGTATGTCTTTGTAGAGATTCCACTA 57.410 34.615 0.00 0.00 36.02 2.74
3028 3284 8.687242 TGTATGTCTTTGTAGAGATTCCACTAG 58.313 37.037 0.00 0.00 36.02 2.57
3029 3285 7.962995 ATGTCTTTGTAGAGATTCCACTAGA 57.037 36.000 0.00 0.00 30.68 2.43
3030 3286 7.962995 TGTCTTTGTAGAGATTCCACTAGAT 57.037 36.000 0.00 0.00 0.00 1.98
3031 3287 7.776107 TGTCTTTGTAGAGATTCCACTAGATG 58.224 38.462 0.00 0.00 0.00 2.90
3046 3302 5.453648 CACTAGATGGACTACATACGAAGC 58.546 45.833 0.00 0.00 40.72 3.86
3047 3303 5.008712 CACTAGATGGACTACATACGAAGCA 59.991 44.000 0.00 0.00 40.72 3.91
3048 3304 5.593095 ACTAGATGGACTACATACGAAGCAA 59.407 40.000 0.00 0.00 40.72 3.91
3049 3305 5.339008 AGATGGACTACATACGAAGCAAA 57.661 39.130 0.00 0.00 40.72 3.68
3050 3306 5.730550 AGATGGACTACATACGAAGCAAAA 58.269 37.500 0.00 0.00 40.72 2.44
3051 3307 6.349300 AGATGGACTACATACGAAGCAAAAT 58.651 36.000 0.00 0.00 40.72 1.82
3052 3308 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
3053 3309 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
3054 3310 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
3055 3311 6.597672 TGGACTACATACGAAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
3056 3312 7.126398 GGACTACATACGAAGCAAAATGAATC 58.874 38.462 0.00 0.00 0.00 2.52
3057 3313 7.201609 GGACTACATACGAAGCAAAATGAATCA 60.202 37.037 0.00 0.00 0.00 2.57
3058 3314 8.039603 ACTACATACGAAGCAAAATGAATCAA 57.960 30.769 0.00 0.00 0.00 2.57
3059 3315 8.677300 ACTACATACGAAGCAAAATGAATCAAT 58.323 29.630 0.00 0.00 0.00 2.57
3060 3316 7.975866 ACATACGAAGCAAAATGAATCAATC 57.024 32.000 0.00 0.00 0.00 2.67
3061 3317 7.765307 ACATACGAAGCAAAATGAATCAATCT 58.235 30.769 0.00 0.00 0.00 2.40
3062 3318 8.892723 ACATACGAAGCAAAATGAATCAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
3063 3319 9.720667 CATACGAAGCAAAATGAATCAATCTAA 57.279 29.630 0.00 0.00 0.00 2.10
3065 3321 8.452989 ACGAAGCAAAATGAATCAATCTAAAC 57.547 30.769 0.00 0.00 0.00 2.01
3066 3322 8.299570 ACGAAGCAAAATGAATCAATCTAAACT 58.700 29.630 0.00 0.00 0.00 2.66
3067 3323 9.132521 CGAAGCAAAATGAATCAATCTAAACTT 57.867 29.630 0.00 0.00 0.00 2.66
3090 3346 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
3095 3351 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3096 3352 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3097 3353 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3098 3354 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
3099 3355 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
3100 3356 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
3101 3357 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
3102 3358 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
3103 3359 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
3104 3360 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
3105 3361 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
3106 3362 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
3107 3363 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
3108 3364 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
3109 3365 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
3110 3366 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
3111 3367 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
3112 3368 6.201044 CCGTATGTGGTTCATAGTGAAATCTC 59.799 42.308 0.00 0.00 38.22 2.75
3113 3369 6.980978 CGTATGTGGTTCATAGTGAAATCTCT 59.019 38.462 0.00 0.00 38.22 3.10
3114 3370 8.135529 CGTATGTGGTTCATAGTGAAATCTCTA 58.864 37.037 0.00 0.00 38.22 2.43
3115 3371 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
3116 3372 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
3117 3373 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
3118 3374 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
3119 3375 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
3120 3376 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
3121 3377 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
3122 3378 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
3135 3391 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3136 3392 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
3137 3393 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
3138 3394 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
3139 3395 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
3140 3396 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3141 3397 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3142 3398 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3143 3399 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3144 3400 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3145 3401 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
3146 3402 3.450096 ACATTTAGGAACGGAGGGAGTAC 59.550 47.826 0.00 0.00 0.00 2.73
3147 3403 1.755179 TTAGGAACGGAGGGAGTACG 58.245 55.000 0.00 0.00 0.00 3.67
3168 3424 2.475864 GAGACTCTGATGATCAATGCGC 59.524 50.000 0.00 0.00 0.00 6.09
3169 3425 1.191868 GACTCTGATGATCAATGCGCG 59.808 52.381 0.00 0.00 0.00 6.86
3172 3428 1.202452 TCTGATGATCAATGCGCGAGT 60.202 47.619 12.10 0.00 0.00 4.18
3188 3444 3.047280 GTGATGACGGGTGCGCAA 61.047 61.111 14.00 0.00 0.00 4.85
3189 3445 2.281139 TGATGACGGGTGCGCAAA 60.281 55.556 14.00 0.00 0.00 3.68
3208 3464 2.904011 AAAACGTGTTGTTGCGAAGA 57.096 40.000 0.00 0.00 40.84 2.87
3216 3472 0.110867 TTGTTGCGAAGACGAATGCG 60.111 50.000 0.00 0.00 42.66 4.73
3228 3484 1.421485 GAATGCGGCGACACAAGAG 59.579 57.895 12.98 0.00 0.00 2.85
3230 3486 3.596066 ATGCGGCGACACAAGAGCT 62.596 57.895 12.98 0.00 0.00 4.09
3231 3487 3.482783 GCGGCGACACAAGAGCTC 61.483 66.667 12.98 5.27 0.00 4.09
3235 3507 1.364626 GGCGACACAAGAGCTCATGG 61.365 60.000 21.97 13.40 0.00 3.66
3237 3509 0.671472 CGACACAAGAGCTCATGGCA 60.671 55.000 21.97 0.00 44.79 4.92
3269 3541 1.069378 GCCCTAGTTCAACGACGACG 61.069 60.000 5.58 5.58 45.75 5.12
3272 3544 2.352651 CCCTAGTTCAACGACGACGATA 59.647 50.000 15.32 0.00 42.66 2.92
3307 3579 2.416547 AGTTGCTATGTGCGTGATGAAC 59.583 45.455 0.00 0.00 46.63 3.18
3314 3586 2.493035 TGTGCGTGATGAACATGTCTT 58.507 42.857 0.00 0.00 37.77 3.01
3316 3588 1.197492 TGCGTGATGAACATGTCTTGC 59.803 47.619 0.00 0.00 37.77 4.01
3347 3619 2.578178 CAAGCTCGTCTCGCCTCG 60.578 66.667 0.00 0.00 0.00 4.63
3348 3620 4.484258 AAGCTCGTCTCGCCTCGC 62.484 66.667 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.822805 TGAAACTTCTACTTAGGGAACATGTAT 58.177 33.333 0.00 0.00 0.00 2.29
5 6 7.074653 TGAAACTTCTACTTAGGGAACATGT 57.925 36.000 0.00 0.00 0.00 3.21
6 7 8.567285 AATGAAACTTCTACTTAGGGAACATG 57.433 34.615 0.00 0.00 0.00 3.21
27 28 9.304731 GCATGCAAATAACTGATTCTTTAATGA 57.695 29.630 14.21 0.00 0.00 2.57
28 29 9.309516 AGCATGCAAATAACTGATTCTTTAATG 57.690 29.630 21.98 0.00 0.00 1.90
30 31 9.787532 GTAGCATGCAAATAACTGATTCTTTAA 57.212 29.630 21.98 0.00 0.00 1.52
31 32 8.955388 TGTAGCATGCAAATAACTGATTCTTTA 58.045 29.630 21.98 0.00 0.00 1.85
32 33 7.829725 TGTAGCATGCAAATAACTGATTCTTT 58.170 30.769 21.98 0.00 0.00 2.52
33 34 7.395190 TGTAGCATGCAAATAACTGATTCTT 57.605 32.000 21.98 0.00 0.00 2.52
34 35 7.578310 ATGTAGCATGCAAATAACTGATTCT 57.422 32.000 21.98 0.00 31.62 2.40
35 36 9.734620 TTTATGTAGCATGCAAATAACTGATTC 57.265 29.630 21.98 0.00 31.62 2.52
38 39 9.571810 CTTTTTATGTAGCATGCAAATAACTGA 57.428 29.630 21.98 3.60 31.62 3.41
39 40 9.571810 TCTTTTTATGTAGCATGCAAATAACTG 57.428 29.630 21.98 11.66 31.62 3.16
40 41 9.573133 GTCTTTTTATGTAGCATGCAAATAACT 57.427 29.630 21.98 0.00 31.62 2.24
41 42 9.352784 TGTCTTTTTATGTAGCATGCAAATAAC 57.647 29.630 21.98 10.00 31.62 1.89
42 43 9.920133 TTGTCTTTTTATGTAGCATGCAAATAA 57.080 25.926 21.98 16.38 31.62 1.40
63 64 5.675684 ATTCGGGCCAAATTATTTTGTCT 57.324 34.783 4.39 0.00 40.55 3.41
64 65 6.334202 TGTATTCGGGCCAAATTATTTTGTC 58.666 36.000 4.39 0.00 40.55 3.18
66 67 6.337356 ACTGTATTCGGGCCAAATTATTTTG 58.663 36.000 4.39 3.57 41.59 2.44
71 72 5.066764 GCTTTACTGTATTCGGGCCAAATTA 59.933 40.000 4.39 0.00 0.00 1.40
74 75 2.750712 GCTTTACTGTATTCGGGCCAAA 59.249 45.455 4.39 0.00 0.00 3.28
229 232 4.283337 TGTGATATACTCCCTCCGTTTCA 58.717 43.478 0.00 0.00 0.00 2.69
258 261 5.774179 ACTTAGACTTAGCCACACCCTATA 58.226 41.667 0.00 0.00 0.00 1.31
269 272 4.807443 ACTTGGTTCGACTTAGACTTAGC 58.193 43.478 0.00 0.00 0.00 3.09
270 273 6.072618 TGAGACTTGGTTCGACTTAGACTTAG 60.073 42.308 0.00 0.00 0.00 2.18
273 276 4.142790 TGAGACTTGGTTCGACTTAGACT 58.857 43.478 0.00 0.00 0.00 3.24
278 281 2.693591 TGACTGAGACTTGGTTCGACTT 59.306 45.455 0.00 0.00 0.00 3.01
353 366 5.183140 TGTCTCAGTCGATTGTTGAGATACA 59.817 40.000 18.42 13.17 46.27 2.29
355 368 5.897377 TGTCTCAGTCGATTGTTGAGATA 57.103 39.130 18.42 15.01 46.27 1.98
364 377 4.400884 AGTCTTGCTATGTCTCAGTCGATT 59.599 41.667 0.00 0.00 0.00 3.34
365 378 3.951037 AGTCTTGCTATGTCTCAGTCGAT 59.049 43.478 0.00 0.00 0.00 3.59
458 521 6.144080 GGTTCTCATCGAATACATTTCCTACG 59.856 42.308 0.00 0.00 33.45 3.51
479 544 2.987232 AGGGAGCTCGTTATTTGGTTC 58.013 47.619 7.83 0.00 0.00 3.62
512 577 4.528674 CTCCGGAGAGTGCAATGG 57.471 61.111 28.21 0.00 35.21 3.16
522 587 1.805945 GCGTGCTAACACTCCGGAG 60.806 63.158 30.11 30.11 45.10 4.63
532 597 6.742999 CGATAGTGTAATTTAGCGTGCTAA 57.257 37.500 10.13 10.13 36.81 3.09
639 714 1.144057 GGCCACCAGACGGACATAG 59.856 63.158 0.00 0.00 35.59 2.23
781 858 0.109781 CATGTGTACGGCAAGGCAAC 60.110 55.000 0.00 0.00 0.00 4.17
782 859 1.240641 CCATGTGTACGGCAAGGCAA 61.241 55.000 0.00 0.00 0.00 4.52
783 860 1.673993 CCATGTGTACGGCAAGGCA 60.674 57.895 0.00 0.00 0.00 4.75
784 861 1.369091 CTCCATGTGTACGGCAAGGC 61.369 60.000 6.63 0.00 0.00 4.35
785 862 1.369091 GCTCCATGTGTACGGCAAGG 61.369 60.000 5.48 5.48 0.00 3.61
786 863 0.673333 TGCTCCATGTGTACGGCAAG 60.673 55.000 0.00 0.00 0.00 4.01
787 864 0.673333 CTGCTCCATGTGTACGGCAA 60.673 55.000 0.00 0.00 0.00 4.52
788 865 1.079197 CTGCTCCATGTGTACGGCA 60.079 57.895 0.00 0.00 0.00 5.69
789 866 1.815421 CCTGCTCCATGTGTACGGC 60.815 63.158 0.00 0.00 0.00 5.68
790 867 0.249120 TTCCTGCTCCATGTGTACGG 59.751 55.000 0.00 0.00 0.00 4.02
845 922 0.921347 GTACGTCGATCCATGTGCAC 59.079 55.000 10.75 10.75 0.00 4.57
859 936 1.005687 AGGAGGTAGCAGAAGGTACGT 59.994 52.381 0.00 0.00 46.92 3.57
874 951 2.704108 GCATGTGCATGAGAGGAGG 58.296 57.895 15.53 0.00 41.20 4.30
901 978 2.226912 CTCTGCTAGGTGTATAGGTCGC 59.773 54.545 0.00 0.00 0.00 5.19
957 1034 1.684983 GCACGGTAGAGGCTAATGGTA 59.315 52.381 0.00 0.00 0.00 3.25
959 1036 0.464036 TGCACGGTAGAGGCTAATGG 59.536 55.000 0.00 0.00 0.00 3.16
964 1041 1.592223 GACTTGCACGGTAGAGGCT 59.408 57.895 0.00 0.00 0.00 4.58
974 1051 4.030452 GCTGCCGTGGACTTGCAC 62.030 66.667 0.00 0.00 0.00 4.57
975 1052 4.254709 AGCTGCCGTGGACTTGCA 62.255 61.111 0.00 0.00 0.00 4.08
976 1053 3.426568 GAGCTGCCGTGGACTTGC 61.427 66.667 0.00 0.00 0.00 4.01
977 1054 2.743928 GGAGCTGCCGTGGACTTG 60.744 66.667 0.00 0.00 0.00 3.16
986 1063 4.864334 CCATGACCCGGAGCTGCC 62.864 72.222 0.73 0.00 0.00 4.85
1010 1091 2.396955 CGCTGCTTGCTCTTCAGGG 61.397 63.158 0.00 0.00 40.11 4.45
1012 1093 1.848932 TTGCGCTGCTTGCTCTTCAG 61.849 55.000 9.73 0.00 40.11 3.02
1130 1211 4.256110 CAAGCTGGATATGAATATGCCGA 58.744 43.478 0.00 0.00 30.98 5.54
1437 1523 0.033504 TCGCCGTTCTTGAAGCTCTT 59.966 50.000 0.00 0.00 0.00 2.85
1470 1556 0.478072 ATGAGGGTGTGGTTGAGCAA 59.522 50.000 0.00 0.00 0.00 3.91
1472 1558 1.021390 CGATGAGGGTGTGGTTGAGC 61.021 60.000 0.00 0.00 0.00 4.26
1531 1617 3.876198 GGTAGCAATGCGGGTGCG 61.876 66.667 0.00 0.00 46.86 5.34
1635 1721 4.521062 GAGGACGCGCTGCTGGAT 62.521 66.667 5.73 0.00 0.00 3.41
1683 1769 1.395045 TACGCAGCTAGCTGGCTCAT 61.395 55.000 38.52 18.59 43.77 2.90
1684 1770 1.395045 ATACGCAGCTAGCTGGCTCA 61.395 55.000 38.52 22.46 43.77 4.26
1685 1771 0.943359 CATACGCAGCTAGCTGGCTC 60.943 60.000 38.52 24.37 43.77 4.70
1689 1775 4.425578 TGCATACGCAGCTAGCTG 57.574 55.556 35.54 35.54 45.36 4.24
1700 1786 9.918630 AAAATGATAATTTAGAGGCATGCATAC 57.081 29.630 21.36 9.85 0.00 2.39
1950 2036 3.213402 CCGGTGTTGGGTGCGTTT 61.213 61.111 0.00 0.00 0.00 3.60
2055 2147 1.176619 TCTCGTTGAAGACCGCCTGA 61.177 55.000 0.00 0.00 0.00 3.86
2108 2200 4.498009 CCGTATCCAGGAACATGAATTTGC 60.498 45.833 0.00 0.00 0.00 3.68
2112 2204 2.172505 TGCCGTATCCAGGAACATGAAT 59.827 45.455 0.00 0.00 0.00 2.57
2116 2208 1.139058 GAGTGCCGTATCCAGGAACAT 59.861 52.381 0.00 0.00 39.85 2.71
2184 2276 1.300080 GCAACAGTTGGCGTGCATT 60.300 52.632 15.28 0.00 0.00 3.56
2290 2386 1.606889 ACCTGGACTCGTGACTCCC 60.607 63.158 0.00 0.00 0.00 4.30
2346 2442 7.309621 GGGATTGTATACTCCAATAGTTAGCGA 60.310 40.741 12.01 0.00 39.80 4.93
2372 2468 5.484958 GCTAAATTTGACATCTCGAGTTCG 58.515 41.667 13.13 4.68 41.45 3.95
2411 2507 2.651361 CCAGCCCTATCCGCTACG 59.349 66.667 0.00 0.00 33.91 3.51
2412 2508 2.344129 GCCAGCCCTATCCGCTAC 59.656 66.667 0.00 0.00 33.91 3.58
2413 2509 3.303135 CGCCAGCCCTATCCGCTA 61.303 66.667 0.00 0.00 33.91 4.26
2439 2586 3.004419 CGCTCTGGAGTCGGAACAATATA 59.996 47.826 0.00 0.00 0.00 0.86
2440 2587 2.223829 CGCTCTGGAGTCGGAACAATAT 60.224 50.000 0.00 0.00 0.00 1.28
2441 2588 1.134367 CGCTCTGGAGTCGGAACAATA 59.866 52.381 0.00 0.00 0.00 1.90
2442 2589 0.108615 CGCTCTGGAGTCGGAACAAT 60.109 55.000 0.00 0.00 0.00 2.71
2443 2590 1.289066 CGCTCTGGAGTCGGAACAA 59.711 57.895 0.00 0.00 0.00 2.83
2444 2591 0.607217 TACGCTCTGGAGTCGGAACA 60.607 55.000 14.79 0.00 34.14 3.18
2445 2592 0.179169 GTACGCTCTGGAGTCGGAAC 60.179 60.000 14.79 10.39 34.14 3.62
2446 2593 1.642037 CGTACGCTCTGGAGTCGGAA 61.642 60.000 0.52 4.60 34.14 4.30
2447 2594 2.104859 CGTACGCTCTGGAGTCGGA 61.105 63.158 0.52 7.12 34.14 4.55
2448 2595 2.104859 TCGTACGCTCTGGAGTCGG 61.105 63.158 11.24 3.08 34.14 4.79
2449 2596 1.060622 GTCGTACGCTCTGGAGTCG 59.939 63.158 11.24 10.89 35.30 4.18
2450 2597 0.733729 ATGTCGTACGCTCTGGAGTC 59.266 55.000 11.24 0.00 0.00 3.36
2451 2598 0.452184 CATGTCGTACGCTCTGGAGT 59.548 55.000 11.24 0.00 0.00 3.85
2452 2599 0.867753 GCATGTCGTACGCTCTGGAG 60.868 60.000 11.24 0.00 0.00 3.86
2453 2600 1.138883 GCATGTCGTACGCTCTGGA 59.861 57.895 11.24 0.00 0.00 3.86
2454 2601 1.142185 CTGCATGTCGTACGCTCTGG 61.142 60.000 11.24 0.00 0.00 3.86
2455 2602 1.746727 GCTGCATGTCGTACGCTCTG 61.747 60.000 11.24 8.30 0.00 3.35
2456 2603 1.517257 GCTGCATGTCGTACGCTCT 60.517 57.895 11.24 0.00 0.00 4.09
2457 2604 0.248498 TAGCTGCATGTCGTACGCTC 60.248 55.000 11.24 6.86 0.00 5.03
2458 2605 0.385751 ATAGCTGCATGTCGTACGCT 59.614 50.000 11.24 1.37 0.00 5.07
2459 2606 1.209128 AATAGCTGCATGTCGTACGC 58.791 50.000 11.24 6.57 0.00 4.42
2460 2607 3.885358 TCTAATAGCTGCATGTCGTACG 58.115 45.455 9.53 9.53 0.00 3.67
2461 2608 6.584954 CATTTCTAATAGCTGCATGTCGTAC 58.415 40.000 1.02 0.00 0.00 3.67
2462 2609 5.177511 GCATTTCTAATAGCTGCATGTCGTA 59.822 40.000 1.02 0.00 33.13 3.43
2463 2610 4.024556 GCATTTCTAATAGCTGCATGTCGT 60.025 41.667 1.02 0.00 33.13 4.34
2464 2611 4.461405 GCATTTCTAATAGCTGCATGTCG 58.539 43.478 1.02 0.00 33.13 4.35
2465 2612 4.612259 CGGCATTTCTAATAGCTGCATGTC 60.612 45.833 1.02 0.00 34.56 3.06
2466 2613 3.251729 CGGCATTTCTAATAGCTGCATGT 59.748 43.478 1.02 0.00 34.56 3.21
2467 2614 3.365666 CCGGCATTTCTAATAGCTGCATG 60.366 47.826 1.02 0.00 34.56 4.06
2468 2615 2.816087 CCGGCATTTCTAATAGCTGCAT 59.184 45.455 1.02 0.00 34.56 3.96
2469 2616 2.221169 CCGGCATTTCTAATAGCTGCA 58.779 47.619 1.02 0.00 34.56 4.41
2470 2617 2.222027 ACCGGCATTTCTAATAGCTGC 58.778 47.619 0.00 0.00 32.14 5.25
2471 2618 4.883083 TCTACCGGCATTTCTAATAGCTG 58.117 43.478 0.00 0.00 0.00 4.24
2472 2619 4.021016 CCTCTACCGGCATTTCTAATAGCT 60.021 45.833 0.00 0.00 0.00 3.32
2473 2620 4.246458 CCTCTACCGGCATTTCTAATAGC 58.754 47.826 0.00 0.00 0.00 2.97
2505 2652 4.641989 ACTTGCCCTCACTATGCTTAAATG 59.358 41.667 0.00 0.00 0.00 2.32
2554 2701 1.270518 ACCGAGAGCACATCATATGGC 60.271 52.381 2.13 0.00 33.60 4.40
2593 2740 6.257849 TCGGTTGATATGCAAAATCTGTAGAC 59.742 38.462 12.19 5.19 38.44 2.59
2628 2796 3.934962 GGAGATGGAGCTCGCCCC 61.935 72.222 7.83 0.65 35.74 5.80
2691 2859 5.887598 TGATGGGTTTCAAGAATGTAGATGG 59.112 40.000 0.00 0.00 0.00 3.51
2697 2865 4.222336 TGGTTGATGGGTTTCAAGAATGT 58.778 39.130 0.00 0.00 36.34 2.71
2710 2878 7.968405 GTGTAGTTAGCTATTTTTGGTTGATGG 59.032 37.037 0.00 0.00 0.00 3.51
2717 2885 7.681939 TGGAAGTGTAGTTAGCTATTTTTGG 57.318 36.000 0.00 0.00 0.00 3.28
2812 2987 3.282021 TGCCCTCAATATGCAAAGTCTC 58.718 45.455 0.00 0.00 30.85 3.36
2820 2995 4.314121 TGTTTTGTTTGCCCTCAATATGC 58.686 39.130 0.00 0.00 31.33 3.14
2825 3000 4.478206 TTGATGTTTTGTTTGCCCTCAA 57.522 36.364 0.00 0.00 0.00 3.02
2937 3114 3.366396 GAGATCAACCCTAGACCTGACA 58.634 50.000 0.00 0.00 0.00 3.58
2938 3115 2.359531 CGAGATCAACCCTAGACCTGAC 59.640 54.545 0.00 0.00 0.00 3.51
2972 3228 1.133976 GGAGGAAGTACATGGCAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
2973 3229 0.253044 GGAGGAAGTACATGGCAGCA 59.747 55.000 0.00 0.00 0.00 4.41
2974 3230 0.811616 CGGAGGAAGTACATGGCAGC 60.812 60.000 0.00 0.00 0.00 5.25
2975 3231 0.537188 ACGGAGGAAGTACATGGCAG 59.463 55.000 0.00 0.00 0.00 4.85
2977 3233 1.653151 GAACGGAGGAAGTACATGGC 58.347 55.000 0.00 0.00 0.00 4.40
2978 3234 1.831736 AGGAACGGAGGAAGTACATGG 59.168 52.381 0.00 0.00 0.00 3.66
2979 3235 4.730949 TTAGGAACGGAGGAAGTACATG 57.269 45.455 0.00 0.00 0.00 3.21
2981 3237 4.529377 ACATTTAGGAACGGAGGAAGTACA 59.471 41.667 0.00 0.00 0.00 2.90
2982 3238 5.082251 ACATTTAGGAACGGAGGAAGTAC 57.918 43.478 0.00 0.00 0.00 2.73
2983 3239 6.381994 ACATACATTTAGGAACGGAGGAAGTA 59.618 38.462 0.00 0.00 0.00 2.24
2984 3240 5.189145 ACATACATTTAGGAACGGAGGAAGT 59.811 40.000 0.00 0.00 0.00 3.01
2985 3241 5.671493 ACATACATTTAGGAACGGAGGAAG 58.329 41.667 0.00 0.00 0.00 3.46
2986 3242 5.424252 AGACATACATTTAGGAACGGAGGAA 59.576 40.000 0.00 0.00 0.00 3.36
2987 3243 4.960469 AGACATACATTTAGGAACGGAGGA 59.040 41.667 0.00 0.00 0.00 3.71
2988 3244 5.277857 AGACATACATTTAGGAACGGAGG 57.722 43.478 0.00 0.00 0.00 4.30
2989 3245 6.594159 ACAAAGACATACATTTAGGAACGGAG 59.406 38.462 0.00 0.00 0.00 4.63
2990 3246 6.469410 ACAAAGACATACATTTAGGAACGGA 58.531 36.000 0.00 0.00 0.00 4.69
2991 3247 6.737254 ACAAAGACATACATTTAGGAACGG 57.263 37.500 0.00 0.00 0.00 4.44
2992 3248 8.697846 TCTACAAAGACATACATTTAGGAACG 57.302 34.615 0.00 0.00 0.00 3.95
2993 3249 9.871238 TCTCTACAAAGACATACATTTAGGAAC 57.129 33.333 0.00 0.00 0.00 3.62
2999 3255 9.167311 GTGGAATCTCTACAAAGACATACATTT 57.833 33.333 0.00 0.00 0.00 2.32
3000 3256 8.543774 AGTGGAATCTCTACAAAGACATACATT 58.456 33.333 0.00 0.00 29.47 2.71
3001 3257 8.083828 AGTGGAATCTCTACAAAGACATACAT 57.916 34.615 0.00 0.00 29.47 2.29
3002 3258 7.482169 AGTGGAATCTCTACAAAGACATACA 57.518 36.000 0.00 0.00 29.47 2.29
3003 3259 8.904834 TCTAGTGGAATCTCTACAAAGACATAC 58.095 37.037 0.00 0.00 29.47 2.39
3004 3260 9.647918 ATCTAGTGGAATCTCTACAAAGACATA 57.352 33.333 0.00 0.00 29.78 2.29
3005 3261 7.962995 TCTAGTGGAATCTCTACAAAGACAT 57.037 36.000 0.00 0.00 29.47 3.06
3006 3262 7.776107 CATCTAGTGGAATCTCTACAAAGACA 58.224 38.462 0.00 0.00 29.78 3.41
3023 3279 5.008712 TGCTTCGTATGTAGTCCATCTAGTG 59.991 44.000 0.00 0.00 34.86 2.74
3024 3280 5.131067 TGCTTCGTATGTAGTCCATCTAGT 58.869 41.667 0.00 0.00 34.86 2.57
3025 3281 5.690997 TGCTTCGTATGTAGTCCATCTAG 57.309 43.478 0.00 0.00 34.86 2.43
3026 3282 6.459670 TTTGCTTCGTATGTAGTCCATCTA 57.540 37.500 0.00 0.00 34.86 1.98
3027 3283 5.339008 TTTGCTTCGTATGTAGTCCATCT 57.661 39.130 0.00 0.00 34.86 2.90
3028 3284 6.257849 TCATTTTGCTTCGTATGTAGTCCATC 59.742 38.462 0.00 0.00 34.86 3.51
3029 3285 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
3030 3286 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
3031 3287 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
3032 3288 7.684670 TGATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
3033 3289 7.609760 TGATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
3034 3290 9.162793 GATTGATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
3035 3291 8.892723 AGATTGATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
3036 3292 7.765307 AGATTGATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
3037 3293 9.720667 TTAGATTGATTCATTTTGCTTCGTATG 57.279 29.630 0.00 0.00 0.00 2.39
3039 3295 9.554724 GTTTAGATTGATTCATTTTGCTTCGTA 57.445 29.630 0.00 0.00 0.00 3.43
3040 3296 8.299570 AGTTTAGATTGATTCATTTTGCTTCGT 58.700 29.630 0.00 0.00 0.00 3.85
3041 3297 8.679288 AGTTTAGATTGATTCATTTTGCTTCG 57.321 30.769 0.00 0.00 0.00 3.79
3064 3320 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
3068 3324 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
3069 3325 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
3070 3326 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
3071 3327 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
3072 3328 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
3073 3329 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
3074 3330 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
3075 3331 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
3076 3332 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
3077 3333 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
3078 3334 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
3079 3335 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
3080 3336 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
3081 3337 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
3082 3338 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
3083 3339 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
3084 3340 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
3085 3341 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
3086 3342 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
3087 3343 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
3088 3344 6.980978 AGAGATTTCACTATGAACCACATACG 59.019 38.462 0.00 0.00 35.89 3.06
3089 3345 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
3090 3346 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
3091 3347 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
3092 3348 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
3093 3349 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
3094 3350 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
3095 3351 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
3096 3352 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
3109 3365 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
3110 3366 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
3111 3367 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
3112 3368 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
3113 3369 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
3114 3370 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
3115 3371 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3116 3372 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3117 3373 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3118 3374 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3119 3375 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3120 3376 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3121 3377 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3122 3378 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3123 3379 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3124 3380 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3125 3381 3.490419 CGTACTCCCTCCGTTCCTAAATG 60.490 52.174 0.00 0.00 0.00 2.32
3126 3382 2.692041 CGTACTCCCTCCGTTCCTAAAT 59.308 50.000 0.00 0.00 0.00 1.40
3127 3383 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
3128 3384 1.281867 TCGTACTCCCTCCGTTCCTAA 59.718 52.381 0.00 0.00 0.00 2.69
3129 3385 0.911769 TCGTACTCCCTCCGTTCCTA 59.088 55.000 0.00 0.00 0.00 2.94
3130 3386 0.394080 CTCGTACTCCCTCCGTTCCT 60.394 60.000 0.00 0.00 0.00 3.36
3131 3387 0.393537 TCTCGTACTCCCTCCGTTCC 60.394 60.000 0.00 0.00 0.00 3.62
3132 3388 0.731994 GTCTCGTACTCCCTCCGTTC 59.268 60.000 0.00 0.00 0.00 3.95
3133 3389 0.327591 AGTCTCGTACTCCCTCCGTT 59.672 55.000 0.00 0.00 30.33 4.44
3134 3390 1.989620 AGTCTCGTACTCCCTCCGT 59.010 57.895 0.00 0.00 30.33 4.69
3135 3391 4.959399 AGTCTCGTACTCCCTCCG 57.041 61.111 0.00 0.00 30.33 4.63
3142 3398 5.507149 GCATTGATCATCAGAGTCTCGTACT 60.507 44.000 0.00 0.00 42.80 2.73
3143 3399 4.679197 GCATTGATCATCAGAGTCTCGTAC 59.321 45.833 0.00 0.00 0.00 3.67
3144 3400 4.555511 CGCATTGATCATCAGAGTCTCGTA 60.556 45.833 0.00 0.00 0.00 3.43
3145 3401 3.715495 GCATTGATCATCAGAGTCTCGT 58.285 45.455 0.00 0.00 0.00 4.18
3146 3402 2.725206 CGCATTGATCATCAGAGTCTCG 59.275 50.000 0.00 0.00 0.00 4.04
3147 3403 2.475864 GCGCATTGATCATCAGAGTCTC 59.524 50.000 0.30 0.00 0.00 3.36
3168 3424 2.880879 CGCACCCGTCATCACTCG 60.881 66.667 0.00 0.00 0.00 4.18
3169 3425 3.188786 GCGCACCCGTCATCACTC 61.189 66.667 0.30 0.00 36.67 3.51
3172 3428 1.448119 TTTTTGCGCACCCGTCATCA 61.448 50.000 11.12 0.00 36.67 3.07
3188 3444 2.912345 GTCTTCGCAACAACACGTTTTT 59.088 40.909 0.00 0.00 34.86 1.94
3189 3445 2.511879 GTCTTCGCAACAACACGTTTT 58.488 42.857 0.00 0.00 34.86 2.43
3194 3450 2.298300 CATTCGTCTTCGCAACAACAC 58.702 47.619 0.00 0.00 36.96 3.32
3195 3451 1.333702 GCATTCGTCTTCGCAACAACA 60.334 47.619 0.00 0.00 36.96 3.33
3197 3453 0.110867 CGCATTCGTCTTCGCAACAA 60.111 50.000 0.00 0.00 36.96 2.83
3203 3459 2.878991 TCGCCGCATTCGTCTTCG 60.879 61.111 0.00 0.00 38.55 3.79
3206 3462 2.809601 GTGTCGCCGCATTCGTCT 60.810 61.111 0.00 0.00 0.00 4.18
3208 3464 2.663520 TTGTGTCGCCGCATTCGT 60.664 55.556 0.00 0.00 0.00 3.85
3216 3472 1.364626 CCATGAGCTCTTGTGTCGCC 61.365 60.000 23.62 0.00 0.00 5.54
3228 3484 2.185494 GCCAGTAGCTGCCATGAGC 61.185 63.158 0.00 0.00 44.14 4.26
3257 3529 4.151258 AGACTTTATCGTCGTCGTTGAA 57.849 40.909 1.33 0.00 38.90 2.69
3272 3544 7.575720 GCACATAGCAACTTCCATTTAGACTTT 60.576 37.037 0.00 0.00 44.79 2.66
3307 3579 1.078918 TCGCTGAGGGCAAGACATG 60.079 57.895 0.00 0.00 41.91 3.21
3314 3586 1.881903 CTTGTCTCTCGCTGAGGGCA 61.882 60.000 5.87 3.20 42.86 5.36
3316 3588 1.153667 GCTTGTCTCTCGCTGAGGG 60.154 63.158 5.87 2.93 42.86 4.30
3328 3600 1.515304 GAGGCGAGACGAGCTTGTC 60.515 63.158 24.38 24.38 39.21 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.