>input_sequence_53761
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----------------------------------------ATGGCGATCGCCCTGAAGAGCAAGCAGCGCAACGGCGGCG
TCAGCCACTCGGCCTCGTTCCTCCTGGGGGCTCTCCTGCCCACCCTCCTGCTCCTCCTCCTCGTCTCCGATCGGGTCGGG
GATCGACTGGTCGGCATATTCATATCCAGCTTGGGGAATGGATCGGCTCATCAGATGATTAGCCACGCCAACCTCTCGAG
CGCGGAAAAGGTTTGCCTGCTCT-GGCTTGGGTTGTGCGGCCCTGGGGTGCACCCGGGCC-GGTCGATACTTCTGAAAAT
CTTACGAATTGATGGTAAAATTTCCAGGACATGCAGGAGGAGAG---GTTCCCAGGGCTCGCGGAGCTGCTGCCAAAGGT
GGCCACCGACGACGGGACGGTGATCGTAACGTCGGTGAACGAGGCGTGGGCGGCGCCGGGCTCCCTCCTCGACCTATTCC
GCAAGAGCTTCAAGAACGGCGAGGGGATCGCGCACTTGCTCAACCACACCCTCATCGTCGCCGTTGACCCCGGCGCCATG
TCCCACTGTGAGGCCGCGCACCCGCATTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCCGCCAACGGCTTCTT
CACGGAAAGCTACCTTGAGCTCGTCTGGGCCAAGCTCTCCATCCAGCAGCGCGTCCTCCAGCTCGGCTACAACTACCTTT
TCACCGTAATGAGCCAGCTAGCTGCGTATGCATGCCTCTAAATTATCATTTTTCATTCACATTTCAACAAGTGAACCAAA
ATGTAATACGCTTCAAATATATACACTCTGATATTATTTCACAAAAAAAATATACACTCTGATATCGTCAGTTAATGTTA
TGTCCATGCAGGATGTGGATGTTATGTGGTTGCGCAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGCCGTCTCC
ACCGACCGCTTCAATGGTGACGCGGAGGCGCTCACAAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACGAACCG
GACGGTGGAAATGTTGAGGCGATGGCGCGTGGCGAGATCACGGTTCCCGCCGA---CC---CACGATCAGGCGGTCTTCA
ACGAGATCAAGGCCGAGCTCGCCGCTGGAGAGTTGCACAGCAAATTCATGTTCCTGGATACGGCACTCTTCGATGGCTTC
TGCCAGTTCCATGGCAAGATGGACACGGTGTGCACAATGCACGCCAACTGTTGCATCGGGCTCGAGAACAAGGTGCATGA
CCTCAGGAAC----ATGGCTGCCGACTGGAAAAACTACACGAGCCAGGTGATACCGCTGGAGAAGGGGAGTCACGAGTCC
AGGTGGTCGTTCCCCGCCAAGTGCGAGGCATCGATGGGGCATCGCTAA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------
>chr3A_1_TraesCS3A01G427400
CATATACATGTTCCCTAAGTAGAAGTTTCATTAAAGAATCAGTTATTTGCATGCTACATAAAAAGACAAAATAAT-TTGG
CCCGAATACAGTAAAGCAAAAAACCATTTTAATCTATGCATTAGTCTTTTCTTTGTATACGATTATCATGAATGTTTGTA
G-TTTTTTCTTATAAACATGATCAAACTTTCAAAGTTTTGACTTAAGACAAATCTAATATGTGAAGTAAAATGAAACGGA
GGGAGTATATCACATATGAATATAGGGTGTGGCTAAGTCTAAGTCG----------AACCAAGTCTCAGTCAAGTGTTAT
AACATGTAAGAAAGAATAAAGAAACAACTAAAAAGAAAAATTGCATGTATCTCAACAA----------------------
---------------------------TCGACTGAGACATAGCAAGACTGATGAA-ATATATGTTCAAGAAATATCATAC
ATATATGCCTATGCTTATTTATTTTTCAGTTTTTTTAAGACGTAGGAAATGTATT--CGATGAGAACCAAATAACGAGCT
CCCTAGAGCCCGGCCACCATTGCACTCTCCGGAGTGTTAGCACGCTAAATTACA----------CTATCGTAGGTACGTA
CCGGTCTCTCTTGTCGCTCATGCACATGCTGCCATCTCACCTCTGACCTCGGGATCATCATGGCCATTGGCCACTATGTC
CGTCTGGTGGCCGTCAGAAAGTCAGAATATGCCGGCCGCGAGATACCTCCATGGCATGGCCATTGCCAAGCCGGAGAACA
GCGCGCTCTTCGGTACGT--CCATGTGTGTGCAGGTACGTTTTGACATCTTCCTTGCGTTGCCTTGCCGTACACATGGAG
CAGGAAGCAAGTACAACTGCCACATCATTCAAAACCAACGAGTGCACATGGATCGACGTACCTTCTGCTACCTCCTCTCA
TGCACATGCAGATACGGGCGACCTATACACCTAGCAGAGGAGTTTAAGTATACCTCTGCAGGCTAGCTAGCAGTACCATT
AGCCTCTACCGTGCAAGTCCACG----GCAGCTCCGGGTCATGGCGATCGCCCTGAAGAGCAAGCAGCGCAACGGCGGCG
TCAGCCACTCGGCCTCGTTCCTCCTGGGGGCTCTCCTGCCCACCCTCCTGCTCCTCCTCCTCGTCTCCGATCGGGTCGGG
GATCGACTGGTCGGCATATTCATATCCAGCTTGGGGAATGGATCGGCTCATCAGATGATTAGCCACGCCAACCTCTCGAG
CGCGGAAAAGGTTTGCCTGCTCT-GGCTTGGGTTGTGCGGCCCTGGGGTGCACCCGGGCC-GGTCGATACTTCTGAAAAT
CTTACGAATTGATGGTAAAATTTCCAGGACATGCAGGAGGAGAG---GTTCCCAGGGCTCGCGGAGCTGCTGCCAAAGGT
GGCCACCGACGACGGGACGGTGATCGTAACGTCGGTGAACGAGGCGTGGGCGGCGCCGGGCTCCCTCCTCGACCTATTCC
GCAAGAGCTTCAAGAACGGCGAGGGGATCGCGCACTTGCTCAACCACACCCTCATCGTCGCCGTTGACCCCGGCGCCATG
TCCCACTGTGAGGCCGCGCACCCGCATTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCCGCCAACGGCTTCTT
CACGGAAAGCTACCTTGAGCTCGTCTGGGCCAAGCTCTCCATCCAGCAGCGCGTCCTCCAGCTCGGCTACAACTACCTTT
TCACCGTAATGAGCCAGCTAGCTGCGTATGCATGCCTCTAAATTATCATTTTTCATTCACATTTCAACAAGTGAACCAAA
ATGTAATACGCTTCAAATATATACACTCTGATATTATTTCACAAAAAAAATATACACTCTGATATCGTCAGTTAATGTTA
TGTCCATGCAGGATGTGGATGTTATGTGGTTGCGCAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGCCGTCTCC
ACCGACCGCTTCAATGGTGACGCGGAGGCGCTCACAAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACGAACCG
GACGGTGGAAATGTTGAGGCGATGGCGCGTGGCGAGATCACGGTTCCCGCCGA---CC---CACGATCAGGCGGTCTTCA
ACGAGATCAAGGCCGAGCTCGCCGCTGGAGAGTTGCACAGCAAATTCATGTTCCTGGATACGGCACTCTTCGATGGCTTC
TGCCAGTTCCATGGCAAGATGGACACGGTGTGCACAATGCACGCCAACTGTTGCATCGGGCTCGAGAACAAGGTGCATGA
CCTCAGGAAC----ATGGCTGCCGACTGGAAAAACTACACGAGCCAGGTGATACCGCTGGAGAAGGGGAGTCACGAGTCC
AGGTGGTCGTTCCCCGCCAAGTGCGAGGCATCGATGGGGCATCGCTAACTATTGGAGTATACAATCCCGAACTCGAGATG
TCAAATTTAGCCGAGCCGCACGAGTACGTAGCGGATAGGGCTGGCGGTCCAAT---------------------------
------------------------ATATATTGTTCCGACTCCAGAGCGTACGACATGCAGCTATTAGAAATGCCGGTAGA
GGCGGAGCCAACATTTAAGCATAGTGAGGGCAAGTGAGACGATAACCACAAAAAAGTATTGCCATATGATGTGCTCTCGG
TTTGAACTTATACTGGAATGTCTACAGAT---------------------TTTGCATATCAACCGAAATGAGATCGGGGC
GAGCTCCATCTCCTCGGTCAGATTTTCAATTTCAAAAGTAAGGTGGTACGTTATTATTCCATCTACATTCTTGAAACCCA
TCAAC---CAAAAATAGCTAACTACACTTCCAAATCAATATTTGCTTTGTGTGATTGTATGGTACTATGGTAGTATCCAA
G----ACAGGCTAATAGTTCCGAACTGAGACTTTGCATATTGA--GGGCAAACAAAACATCAAAAAAGAGTATGTAATTC
CTAACAGATATAACAAAAAATAGAATAAATAATATCTAAAGATCTAAAATTAACATTAATATGTAATGATATATGT----
---------------------------------------------------------------------------CAGGT
CTAGGGTTGATCTCGCATGAACCATGCATGCTGCCATGTACTTCCTCCGTTCCTAAATGTATGTCTTTGTAGAGATTCCA
CTAGATGGACTACATACGAAGCAAAATGAATCAATCTAAACTTAAAATGCATCTATATACATCCGTATGTGGTTCATAGT
GAAATCTCTACAAAGACTTACATTTAGGAACGGAGGGAGTACGAGACTCTGATGATCAATGCGCGAGTGATGACGGGTGC
GCAAAAAACGTGTTGTTGCGAAGACGAATGCGGCGACACAAGAGCTCA----------------TGGCAGCTACTGGCTA
TGCCCTAGTTCAACGACGACGATAAAGTCTAAATGGAAGTTGCTATGTGCGTGATGAACATGTCTTGCCCTCAGCGAGAG
ACAAGCTCGTCTCGCCTCGCGTAG-
>chr3D_44
-------------------------------------------TATTTGCATGCTACATAAAATTATAAAAGAAAATTGG
CCTGAATACAACAAAGCAAAAAACCATTTTAATCTATGTAATAGTCTTTTTTGTGTATACGGTTATCATGAATGTTTGTA
ATTTTTTTCCTATAAAATTGATCAAACTTCCAAAGTTTTGACATAAGACAAATCTAATATGTGAAGTAAAAAGAAACGGA
AGGAGTATATCACATATGAACATAGGGTGTGCTTAGGTCTCAGTCGACTGAGACTTAACCAAGTCTCAGTCAAGTGCTAT
AACATGTAAGAAGGAACAAAGAAAAAACTAAAAAGAAAAATTGCACGGATCTCAACGTAAGATCTTATGAATATAGCATC
GACCGAGACATAACGAAGTCTTATTAGTCGACTGGGACTTAGCAAAACAGATGAACATATAAGTTCAAGAAATTTCATAC
ATATATGCTCATGCTTATTTATTTTTCTA-TTTTTTAAGATGTAGGAAATGTATTTTCGATGAAAACCGAATAATGAGCT
CCCTAGAGCCCGGCCAACATTGCACTTTCCGGAGTGCTAGCACACTAAATTACGCTATACCTACCTATCGTAGGTACGTA
CTGGTCTCTCTTGTCGCTCATGCACATGCTGCCATCTCACCTCTGACCTCGGGATCATCATGGCCATTGGCCAGTACGTC
CGTCTGGTGGCCGTCAGAAAGTCAGAATATGCCGGCCACGAGATACCTCCATGGCATGGCCATTGCCAAGCCGGAGAACA
GCGCGCTCTTGGGTACGTCCCCATGTGTGTGCAGGTACGTTTTGACATCTTCCTTGC----------CGTACACATGGAG
CAGGAAGCAAGTACAACTGCCACATCATTCAAAACCAACGAATGCACATGGATCGTCGAACCTTCTGCTAGCTCCTCTCA
TGCACATGCAGATACGGTCGACCTACACATCTAGCAGAGGAGTTTAAGTATACCTCTGCAGGCTAGCTAGCAGCATT---
-----------------------------GGCTCCGGGTCATGGCGATCGGCAAGAAGAGCAAGCAGCGCAATGGCGGCG
TCAGCCACTCGGCCTCGTTCCTCCTCGGGGCTCTCCTGCCCACCCTCCTACTCCTCCTCCTCGCGTCCGATCGGGTCGAG
GAGCGACTGACCGGCATATTCATATCCAGCTTGGGGAATGGATCGCCTCATCAGATGATTAGCCACGCCAACCTCTCGAG
CGCGGAAAAGGTTTGCCTGCTCGGGGCTTAGGTTGTGCGGCCCTAGGGTGCACCCGGGCCCGGTCGATACTTTTGAAAAT
CATACAAATTGATGGTAAAATTTCCAGGACATGCAGGAGGAGAG---ATTCCCAGGGCTCGCAGAGCTGCTGCCAAAGGT
GGCCACCGACGACGGGACGGTGATCGTAACGTCGGTGAACGAGGCGTGGGCGGCACCGGGCTCCCTCCTCGACCTATTTC
GCGAGAGCTTCAACAACGGCGAGGGGATCACACACCTCCTCAACCACACCCTCATCGTGGCCGTTGACCCCGGCGCCATG
TCCCACTGTGAGGCCGTGCACCCTCACTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCCGCCAACGGCTTCTT
CACCGAAAGCTACCTTGAGCTCGTCTGGGCCAAGCTCTCCCTCCAGCAGCGCGTCCTCCAGCTTGGCTACAACTATCTTT
TCACTGTA---AG-------------------------TAAATTATCATTTTTCATTCACATTTCAACAAGTGAACCAAA
ATGTAATACGTTC--------------------------------AAATATACACACTCTGATATTGTCAGTTAATGTTA
TGTCCATGCAGGATGTGGATGTTATGTGGTTGCGTAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGTCGTCTCC
ACCGATCGCTTCAGTGGTGATGCGGAGGCGCTCACGAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACGAACCG
GACGGTGGAAATGTTGAGGCGATGGCGCGTAGCGAGATCGCGGTTCCCACCGA---CC---CACGACCAAGCGGTCTTCA
ACGAGATCAAGGCCGAGCTTGCCGCTGGCGAGCTGGACATCAAGTTCGTGTTCCTTGATACGACACTCTTCGATGGCTTC
TGCCAGTTCCATAGCAAGATGGACAGAGTGTGCACGATGCACGCTAACTGCTGTATCGGGCTCGAGAACAAGGTGCATGA
CCTCGGAAAC----ATGGCTGCCGACTGGAAAAACTACACGAACAAGGTGATACCATTGGAGAAGAGGAGTCACGAGTCG
AGGTGGACGTTTCCTGCCAAGTGCGAGGCATCGATGGGACACCGCTAACTATTGGAGTATACAATCCAGAACTCGAGATG
TCAAATTTAGCCGAGCTGCACGAGTA----GCGGATAGGGCTAGCGGTCCAAT---------------------------
------------------------A-------------------------------------------------------
GGCGGAGCCAAGATTTAAGCATAGTGAGGGCAAGTGAGACGATAACCGC--AAAATTATTACCATATGATGTGCTCTCGG
TTTGAGTTTATACTGGCATTTCTACAGATGCCAACATATGTTATTAAGAGTTTGCATATCAACCGAAATGAGATCAGGGC
GAGCTCCATCTCCTCAGTCAGATTTTCAATTTCAAAAGTAAGGTGGTACGTTATTATTTCATCTTCATTCTTGAAACACA
TCAAACTTCAAAAATAACTAACTAGACTTCGAAATCAATATTTGTGTTGTGTGATTGTATGGTACTATGGTAGTATCCAA
GCTAGACAGGCTAACAGTTCCGAACTAGGAGTTTACATAGTGAGGGGGCAAATAAAACTTCAAAAAATAGTATGTAATTC
-TAATAGATCTAAC-AAAAATACTATACATAATATCTAAAGATCTAACGTTAACATTAATATGCAATGATATACAT----
---------------------------------------------------------------------------CAGGT
CTAGGGTTGA-CTCGCATGAGCCACGC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3B_547
TACCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATCGTAGGTACGTA
CCGGTCTCTCT-GTCGCTCATGCACATGCTGCCATCTCACCTCTGACCTCGGGATGATCATGGCCATTGGCCAGTACGTT
CGTCTGGTGGCCGTGAGAAAGTCAGAATATACCGGCCGCGAGATACCTCCATGGCATGGCCATTGCCAAGCCAGAGAACA
GCGCGCTCTTCGGTACGT-CCCATGTGTGTGCAGGTACGTTTTGACATCTTCCTTGC----------CGTACACATGGAG
CTGGAAGCAAGTACAACTGCCACATCATTCAAAACCAACGAATGCACATGGATCGTCGTACCTTCTGCTAGCTCCTCTCA
TGCACATGCAGATGCGGTCGACCT---CACTTCGCAGAGGAGTTTAAGTACACCTCGACAGGCTAGCTAGCAGCAGCATT
GGCCTCTACCTCTACCGTAAGTCTACTGCGGCTCCGGGTCATAGCGATCGGCATGAAGAGCAAGCAGCGCAATGGCGGCC
TCGGCCACTCGGCCTCGTTCCTCCTCGGGGCTCTCCTGCCCACCCTCATGCTCTTCCTCCTCGCGTCCGATCGGGTCGGG
GATCGACTGGCCAGCATATTCATATCCAGCTTGGGGAATGGACCGGCTCATCAGATGATTAGCCACGCCAACCTCTCGAG
CGCGGAAAAGGTTTGCCTGCCCGGGGTTTGGGTTGTGCGCCCA--------------GGCCTGTCAATAGTTCTCAAGAT
CTTACGAATTGATCGTAAAATTTCCAGGACATGCAGGAGGAGAG---ATTCCGAGGGCTCGCAGAGCTGCTGCCAAAGGT
GGCCACCGACGACGGGACGGTGATCGTTACGTCGGTGAACGAGGCGTGGGCGGCACCGGGCTCCCTCCTCGACCTATTCC
GCGAGAGCTTCAAGAACGGCGAGGGGATCGCGCACCTCCTCAATCACACCCTCATCGTGGCCGTTGACCCCGGCGCCATG
TCCCACTGTGAGGCGGTGCACCCGCATTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCTGCCAACCGCTTCTT
CACCGAAAGCTACCTTGAGCTCGTCTGGGCCAAGCTCTCCCTGCAGCAGCGCGTCCTCCAGCTCGGCTACAACTACCTTT
TCACCGTA---AGCTAGCTAGCTGCTTATGCATTCTTCTAAATTATCA-TTTTCATTCACGTTTCAACAAGTGAACCAAA
ATGTAATAGGTTC--------------------------------AAACATACACACTCTGATATCGTCAGTTAAT-TTA
TGTCCATGCAGGATGTGGATGTTATGTGGTTGCGTAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGTCGTCTCC
ACCGACCGCTTCAATGGTGACGCGGAGGCGCTCACGAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACAAACCG
GACGGTGGAAATATTGAGGAGATGGCGCGTAGCAAGATCACGGTTCCCACCGA---CC---CGCGACCAGGCGGTCTTCA
ACGAGATCAAGGCCGAGCTTGCCGCTGACGAGCTGCACATCAAGTTCGTGTTCCTCGATACAACACTCTTCGATGGCTTC
TGCCAATTCCATAGCAAGATGGACAGGGTGTGCACGATGCACGCTAATTGTTGCATCGGGCTCGAGAACAAGGTGCATGA
CCTTGGGAACATGCATGGCTGCCGACTGGAAAAACTACACGAACAAGGTGATACAGTTGGAGAAGAGGAGTCACGAGTCC
AGGTGGACATTTCCCGCCAAGTGCGAGGCATCGATGGGACACCGCTAACTATTGGAGTATACAATCCAGAACTCGAGATG
TCAAATTTAGCCGAGCCGCACGAGTA----GCGGATAGGGCTGGCGGTCCAATATTGTTCCGACTCTAGAGCGTACGGCA
TGCGGCTATTAGAAATACCGGTAGA-------------------------------------------------------
GGCGGAGCCAAGATTTAAGCACAGTGAGGGCAAGTGGGACGATAACTGC-AAAAAGTATTACCATATGATGTGCTCTCGG
TTTGAGTTTATACTGGAATTTCTACAGATGCCAACATATGTTATTAAGAGTTTGCATATCAACCTAAATGAGATCAGGGC
GAGCTCCATCTCCTCAGTCAGATCTTCAATTTCAAAAGTAAGGTGGTACGTTATTATTTCATCTTCATTCTTGAAACACA
TCGAACTTCAAAAATAACTAACTAGACTTCGAAACAAATATTTTCTTTGTGTGATTGTATGGTACTATGGTAGTGTCCAA
G----ACAGGCTAATAGTTCCGAACAAAGAGTTTACATAGTGAGC--GCAAATAAAACTTCAAAAAAGAGTATGTAATTT
CTAATAGATCTAACAAAAATACTATAC--TAATATCTAAAGATCTAACATTAACATTAATATGTAATGATATACTCCCTC
TGTCCCATAATATAAGAATGTTTTCCAAGCTACAACAGTTTGAAAATGTTCTTATATTATAGGACGGAGGGAGTACATGT
CTAGGGTTGA-CTCGCATGAGCCACACGCCGTCATAACG-----------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGACTCTGATGATCAATGCGTCAGGGATGACGGGTGC
GCACCAAACACGCTGTTGTGACGTCGAATGCCGCGACACAAGAACAAAGTATCAAAAGAGCTGGTGACGGCTGCTGGCTA
TGCCCTAGGTCAACGACGACAATCAAGTCTAAATGGAAGTTGCTATGTGCGTGATGAATATGTCTCGTCCTCAGCGAGAC
ACATGCTTGTCTCGCCTCAGCGTAG
>chr3A_1305
GGACAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------GGAGGAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGT
GGCCACGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGGCCGGGCTCCCTCCTCGACCTCTTCC
GCGCGGGCTTCAATAGCGGCGAGGAGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTG
GCGCACTGCGAGGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCAT
GACCAGGAGCTACCTGGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCT
TCACC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GACGTGGACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCATCTCC
ACCGACCGGTTCAACGGCGACGCCGAGTCCCTGGCGAACGCGCCCAACACCGGCTTCTACTACGTCAAGTCCACCAACCG
CACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGCGGTCGCGGTTCCCGCCGA---CCCAGCACGACCAGGCGGTGTTCG
ACGAGATCAAGGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGGACACGGCGCTCTTCGACGGCTTC
TGCCAGCTCCACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATTGGGCTCGAGAACAAGGTGCACGA
CCTCACCAA----CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGCCGGAGAGAAGGGACAGCGGGCGC
ACGTGGACGGCCCCCGCCCAGTGCGAGG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3A_1311
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------GCAGGAGGAGTC---ATTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGT
CGCCATGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGACCTCTTCC
GCGGGAGCTTCCACGACGGCGAGGGGATCGGGCACCTCCTCAACCACACCCTCATCGTCGCCGTTGACCCCGGCGCCTTG
GCCCTCTGCAAGGCCGTGCACCCCCACTGCTACCTCCTGGAGGTCATGGCCGCCGGCGTCAGCTCCGCCAACGGCTTCAT
GACCAGAAGCTACCTCGAGCTCGTCTGGTCCAAGCTCACCTTGCAGCACCGCGTCCTGCAGCTCGGCTACAACTATCTCT
ACACCGTA---AGCTACCAAGCCACACATACATGCCTCTGAATCTCTCGTC-----TCACATTTCAACGGATGAACCGAA
ATT------------------------------------------------------------------------TGTTA
TGATAATGCAGGACCTGGATGTGCTGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCG
ACGGACCGGTTCAACGGCGACGCCGAGGACCTGACGAACGCGCCCAACACCGGCTTCTACTACGTCAGGTCGACCAACCG
CACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGCC---CACGACCAGGAGGTCTTCG
AGGCGATCAAGGGCGAGTTCGTCGCCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCGACACGGCGCTCTTCGACGGCTTC
TGCGAGTACCACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTCCGGCTCGCGACCAAGATGCACGA
CCTCCGGAAC----GTGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGCCGCCGCCGGAGAAGATGAGCAGCAAGCTC
AGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3B_1314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGAGGAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGT
GGCCACGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGCCCGGGCTCCCTCCTCGACCTCTTCC
GCGCGGGGTTCAACAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTG
GCGCACTGCGAGGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCAT
GACCAAGAGCTACTTCGAGCTCGTCTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCT
TCACC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GACGTGGACATCATGTGGCTGCGCAACCCGTTCCGGTACATCAGCCTCTACGCCGACATGGCCGTCTCC
ACCGACCGGTTCAACGGCGACGCCGAGGCCCTGACGAACGCGCCCAACACGGGCTTCTACTACGTCAAGTCCACCAACCG
CACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---CC---CACGACCAGGCGGTGTTCG
ACGAGATTAAGGGCGAGCTGGCAGGCGGCGAGCTGCACATCAGGTTCGTGTTCCTCGAGACGGCGCTCTTCGACGGCTTC
TGCCAGCTCCACGACGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATCGGGCTCGAGAACAAGGTGCACGA
CCTCACCAA----CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGAGAGAAGGGGCAGCGGGCGT
AGGTGGACGGCCCCCGACCAGTGCGAGGAGTCCATGAGGCAGCGCTGAC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3D_1324
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TTCCCTGGGCTGGCGGAGCTGCTGCCGAGGGT
GGCCACGGACGACGGGACAGTGATCATCACGTCCGTGAACGAGGCGTGGTCGCGGCCGGGGTCCCTCCTGGACCTCTTCC
GCGCGGGGTTCAGGAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTG
GCGCACTGCGAGGCGGTGCACCCGCACTGCTACCTCCTGGAGGTGACCTCCGCCAACGTCAGCTCCGCCAACCGCTTTAT
GAGCAAGAGCTACTTCGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCT
TCAC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GGACGTGGACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCC
ACCGACCGGTTCAACGGCGACGCGGAGGCCCTGACGAACGCGCCCAACACGGGGTTTTACTACGTCAAGTCCACCAACCG
CACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---CC---CACGACCAGGCGGTGTTCG
ACGAGATCAAGGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGGAGACGGCGCTCTTCGACGGCTTC
TGCCAGCTCCACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATCGGACTCGAGAACAAGGTGCATGA
CCTCACCAA----CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGAGAGAAGGGGCAGCGGGCGT
AGGTGGACGGCCCCCGACCAGTGCGAGGACTCCATGAGGCAGCGCT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3B_1841
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----ATGCAGGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCC
ACCGACCGGTTCAACGGCAACGCGGAGGACCTGACGAACGCGCCCAACACCGGCTTCTACTACGTCAGGTCCACCAACCG
CACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGCC---CACGACCAGGAGGTCTTCG
AGGCGATCAAGGGCGAGTTCGTCGGCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCGACACGGCGCTCTTCGACGGCTTC
TGCGAGTACCACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTCCGGCTCGCGACCAAGATGCACGA
CCTCAGGAA----CGTGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGACGCCGCCGGAGAAGATGAGCAGCAAGCTC
CGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SS-S----S--S-----
--S-------SS--------------------------S-S---------S-S--------S------------------
S--------S------SS-----------S------------S----------------------------S--------
S-------------------S----------SS--S----S-----------------------------------S---
------------S---S-------S--------------------S-S--------SS----------------------
----------------------------------S---S------S--S------------S-----------S------
--------SS-----------------SSS----------S----------------------S----S-----S-----
----------------S---------S---------S------S---------S--------------------------
-------------------------------------------------------------------------S--S---
--------------------------------------------------------------------------------
---------------------------------------------------------SSSSSSSSSS-------------
-----------------------------------------S-------------S--------------S---------
-----------------S-------S-----------------------------------------------S-S----
S---------SSSSSS--SSSSS------S--------------------S-S-------------------S-------
-------------------------S-------------------------------------SS---------------
----------S---------------------------------------------------------------------
----------------------S---------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------S-S------------------------------------------
----------------S---------------------------------------------------------------
---S------------------------------------S---------------------------------------
--------SSS---S----------S------------------------------------------------------
----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S---------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------------S-------------
----------------------------S---S------S---S---S--------------------------------
-------------------------S---------S--------------------------------------------
-----------------------------------------------------------------S--------------
------S----------------------------------S-------------------------S------------
--------------------------SSSS--------------------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------S-----------------------------------S-S----------S-------------------
-----SS------------S-------------------------------------------------------S----
---------------S------------------------------------------S-----S------------S--
----S-----------S-------S-----S-------------------------------------------------
--------------------------S---S---S----S------------S-----S---------------------
----S----S------------S----S-------------------S-------------------------SS-----
--------------------------------------------------------------------------------
----------S---------S---S--SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SS--S------------
---SS----SS-S-----S--S-S-------S-----------S-SS-------------------S-S---S-------
--------S-----------S--S----------------------------------S------S-S-----------S
---S---S----------SSSSSS-
>forward_863
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GACATCTTCCTTGCGTTGCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_2589
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATTGTTCCGACTCCAGAGCG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
