Multiple sequence alignment - TraesCS3A01G424200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G424200 chr3A 100.000 3232 0 0 1 3232 667131137 667134368 0.000000e+00 5969.0
1 TraesCS3A01G424200 chr3A 83.806 247 40 0 1765 2011 667354104 667354350 5.390000e-58 235.0
2 TraesCS3A01G424200 chr3A 81.641 256 44 3 1752 2004 667345669 667345924 3.270000e-50 209.0
3 TraesCS3A01G424200 chr3D 88.912 2841 195 54 4 2773 532103691 532106482 0.000000e+00 3391.0
4 TraesCS3A01G424200 chr3D 94.295 298 11 4 2774 3069 532106550 532106843 4.920000e-123 451.0
5 TraesCS3A01G424200 chr3D 81.106 434 58 16 895 1309 532169457 532169885 3.110000e-85 326.0
6 TraesCS3A01G424200 chr3D 85.000 260 39 0 1752 2011 532170580 532170839 6.880000e-67 265.0
7 TraesCS3A01G424200 chr3D 77.734 256 52 3 1752 2004 532156121 532156374 5.580000e-33 152.0
8 TraesCS3A01G424200 chr3B 89.396 1886 141 37 906 2773 704024780 704026624 0.000000e+00 2320.0
9 TraesCS3A01G424200 chr3B 90.100 1394 97 25 1393 2773 704109377 704110742 0.000000e+00 1772.0
10 TraesCS3A01G424200 chr3B 90.367 436 26 3 906 1325 704108909 704109344 2.820000e-155 558.0
11 TraesCS3A01G424200 chr3B 94.595 296 13 2 2774 3069 704026692 704026984 3.800000e-124 455.0
12 TraesCS3A01G424200 chr3B 94.515 237 10 2 2833 3069 704119368 704119601 2.370000e-96 363.0
13 TraesCS3A01G424200 chr3B 76.407 551 96 26 1764 2307 704324757 704325280 1.910000e-67 267.0
14 TraesCS3A01G424200 chr3B 78.599 257 50 4 1752 2004 704311988 704312243 7.170000e-37 165.0
15 TraesCS3A01G424200 chr6D 84.507 71 8 3 112 180 7723784 7723853 2.080000e-07 67.6
16 TraesCS3A01G424200 chr6D 86.207 58 7 1 83 139 9065480 9065537 9.680000e-06 62.1
17 TraesCS3A01G424200 chrUn 94.872 39 1 1 101 139 351892421 351892384 3.480000e-05 60.2
18 TraesCS3A01G424200 chr6B 94.872 39 1 1 101 139 16610997 16611034 3.480000e-05 60.2
19 TraesCS3A01G424200 chr6B 94.872 39 1 1 101 139 16654317 16654354 3.480000e-05 60.2
20 TraesCS3A01G424200 chr6B 94.872 39 1 1 101 139 16666213 16666250 3.480000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G424200 chr3A 667131137 667134368 3231 False 5969.0 5969 100.0000 1 3232 1 chr3A.!!$F1 3231
1 TraesCS3A01G424200 chr3D 532103691 532106843 3152 False 1921.0 3391 91.6035 4 3069 2 chr3D.!!$F2 3065
2 TraesCS3A01G424200 chr3D 532169457 532170839 1382 False 295.5 326 83.0530 895 2011 2 chr3D.!!$F3 1116
3 TraesCS3A01G424200 chr3B 704024780 704026984 2204 False 1387.5 2320 91.9955 906 3069 2 chr3B.!!$F4 2163
4 TraesCS3A01G424200 chr3B 704108909 704110742 1833 False 1165.0 1772 90.2335 906 2773 2 chr3B.!!$F5 1867
5 TraesCS3A01G424200 chr3B 704324757 704325280 523 False 267.0 267 76.4070 1764 2307 1 chr3B.!!$F3 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1023 0.395173 GTTCCGCTCCCTCTCTCTCT 60.395 60.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 2755 0.592637 TGCGCCTCTTTGACATGTTG 59.407 50.0 4.18 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
262 269 9.480538 TTTTCTTAAATCGCGTACATTATCAAC 57.519 29.630 5.77 0.00 0.00 3.18
263 270 6.859090 TCTTAAATCGCGTACATTATCAACG 58.141 36.000 5.77 0.00 39.55 4.10
271 278 3.244345 CGTACATTATCAACGCCGTGAAT 59.756 43.478 0.00 0.00 0.00 2.57
272 279 4.260051 CGTACATTATCAACGCCGTGAATT 60.260 41.667 0.00 0.00 0.00 2.17
362 387 7.295322 TGGTACCATGTTTTGAAATTCATCA 57.705 32.000 11.60 0.00 0.00 3.07
555 582 7.832503 AATCATGAACATTTTTCGATTTCCC 57.167 32.000 0.00 0.00 0.00 3.97
556 583 5.398169 TCATGAACATTTTTCGATTTCCCG 58.602 37.500 0.00 0.00 0.00 5.14
558 585 5.440234 TGAACATTTTTCGATTTCCCGAA 57.560 34.783 0.00 0.00 45.45 4.30
559 586 5.216648 TGAACATTTTTCGATTTCCCGAAC 58.783 37.500 0.00 0.00 46.56 3.95
560 587 4.839668 ACATTTTTCGATTTCCCGAACA 57.160 36.364 0.00 0.00 46.56 3.18
561 588 5.385509 ACATTTTTCGATTTCCCGAACAT 57.614 34.783 0.00 0.00 46.56 2.71
562 589 5.778862 ACATTTTTCGATTTCCCGAACATT 58.221 33.333 0.00 0.00 46.56 2.71
567 594 4.153958 TCGATTTCCCGAACATTGTTTG 57.846 40.909 9.47 9.47 35.42 2.93
581 608 6.492007 ACATTGTTTGTGCAAAATTGTGAA 57.508 29.167 0.00 0.00 37.11 3.18
587 614 7.365741 TGTTTGTGCAAAATTGTGAACATTTT 58.634 26.923 10.41 0.00 32.70 1.82
640 667 6.647334 TCATGAGCAAGTTTTTAATCCACA 57.353 33.333 0.00 0.00 0.00 4.17
643 670 7.652909 TCATGAGCAAGTTTTTAATCCACAAAG 59.347 33.333 0.00 0.00 0.00 2.77
647 674 6.203338 AGCAAGTTTTTAATCCACAAAGCATG 59.797 34.615 0.00 0.00 0.00 4.06
652 679 8.200792 AGTTTTTAATCCACAAAGCATGTTGTA 58.799 29.630 1.72 0.00 41.46 2.41
656 683 9.632807 TTTAATCCACAAAGCATGTTGTAATAC 57.367 29.630 1.72 0.00 41.46 1.89
783 820 1.294857 AAAAACATTTGGTGTGGCGC 58.705 45.000 0.00 0.00 41.14 6.53
785 822 2.691674 AAACATTTGGTGTGGCGCCG 62.692 55.000 23.90 6.26 41.14 6.46
806 847 4.676951 CGCCTGGGCCCAAAAGGA 62.677 66.667 28.60 4.82 38.24 3.36
810 851 2.203625 TGGGCCCAAAAGGACTGC 60.204 61.111 26.33 0.00 46.87 4.40
833 874 0.958822 GCCGTTGATGTCCAAGGTTT 59.041 50.000 0.00 0.00 38.58 3.27
834 875 1.335872 GCCGTTGATGTCCAAGGTTTG 60.336 52.381 0.00 0.00 38.58 2.93
845 886 2.060980 AAGGTTTGGCCCACGCAAA 61.061 52.632 0.00 0.00 38.26 3.68
849 890 1.153549 TTTGGCCCACGCAAACAAC 60.154 52.632 0.00 0.00 36.38 3.32
850 891 2.890847 TTTGGCCCACGCAAACAACG 62.891 55.000 0.00 0.00 36.38 4.10
851 892 3.587933 GGCCCACGCAAACAACGA 61.588 61.111 0.00 0.00 36.38 3.85
852 893 2.051345 GCCCACGCAAACAACGAG 60.051 61.111 0.00 0.00 34.03 4.18
853 894 2.539338 GCCCACGCAAACAACGAGA 61.539 57.895 0.00 0.00 34.03 4.04
854 895 1.569493 CCCACGCAAACAACGAGAG 59.431 57.895 0.00 0.00 0.00 3.20
889 935 0.635009 ATTACCCCCTCCGACTCAGA 59.365 55.000 0.00 0.00 0.00 3.27
971 1023 0.395173 GTTCCGCTCCCTCTCTCTCT 60.395 60.000 0.00 0.00 0.00 3.10
1004 1090 3.774528 AGAAGCGCCGCTGATGGA 61.775 61.111 14.52 0.00 39.62 3.41
1024 1110 3.680786 CGCCGTCACTCCTGACCA 61.681 66.667 0.00 0.00 43.64 4.02
1158 1247 2.264794 GCCACCGTCGGTCTCAAT 59.735 61.111 15.67 0.00 31.02 2.57
1325 1420 2.930562 AGGTGCGCCTCCCTTTCT 60.931 61.111 14.67 0.00 42.67 2.52
1341 1543 4.706476 CCCTTTCTTGGAAGATTGCATGTA 59.294 41.667 0.00 0.00 34.49 2.29
1343 1545 6.127253 CCCTTTCTTGGAAGATTGCATGTATT 60.127 38.462 0.00 0.00 34.49 1.89
1344 1546 7.068593 CCCTTTCTTGGAAGATTGCATGTATTA 59.931 37.037 0.00 0.00 34.49 0.98
1349 1551 7.922278 TCTTGGAAGATTGCATGTATTATTTGC 59.078 33.333 0.00 0.00 36.91 3.68
1351 1553 5.630680 GGAAGATTGCATGTATTATTTGCGG 59.369 40.000 0.00 0.00 39.23 5.69
1353 1555 2.397777 TGCATGTATTATTTGCGGCG 57.602 45.000 0.51 0.51 39.23 6.46
1354 1556 1.943340 TGCATGTATTATTTGCGGCGA 59.057 42.857 12.98 0.00 39.23 5.54
1356 1558 3.163594 GCATGTATTATTTGCGGCGATC 58.836 45.455 12.98 0.00 0.00 3.69
1357 1559 3.407252 CATGTATTATTTGCGGCGATCG 58.593 45.455 12.98 11.69 42.76 3.69
1358 1560 2.745102 TGTATTATTTGCGGCGATCGA 58.255 42.857 21.57 0.00 42.43 3.59
1359 1561 3.124560 TGTATTATTTGCGGCGATCGAA 58.875 40.909 21.57 3.65 42.43 3.71
1361 1563 0.303493 TTATTTGCGGCGATCGAAGC 59.697 50.000 21.57 22.21 42.43 3.86
1373 1601 0.652592 ATCGAAGCTACATTGTGCGC 59.347 50.000 0.00 0.00 0.00 6.09
1374 1602 1.296145 CGAAGCTACATTGTGCGCG 60.296 57.895 0.00 0.00 0.00 6.86
1385 1613 3.257561 GTGCGCGCGAGATGTCAT 61.258 61.111 37.18 0.00 0.00 3.06
1391 1619 0.230769 GCGCGAGATGTCATTAGCAC 59.769 55.000 12.10 0.00 0.00 4.40
1411 1650 4.493547 CACCTGTTCTCTGATTCTCTGAC 58.506 47.826 0.00 0.00 0.00 3.51
1415 1654 5.868801 CCTGTTCTCTGATTCTCTGACTTTC 59.131 44.000 0.00 0.00 0.00 2.62
1459 1703 6.322201 AGCATAAATAATTGTTCAGGGTCCAG 59.678 38.462 0.00 0.00 0.00 3.86
1544 1800 6.765036 AGCAAGTTGGATACTGATTATCACTG 59.235 38.462 4.75 0.00 38.79 3.66
1586 1945 0.306840 TCGCGGTAGCTATCAACTCG 59.693 55.000 6.13 2.07 42.32 4.18
1616 1989 7.458409 ACTGTTCTTGTTCATAGATTTGCAT 57.542 32.000 0.00 0.00 0.00 3.96
1660 2041 7.468922 CGAAGCAATTATCTCACATCAAGTA 57.531 36.000 0.00 0.00 0.00 2.24
1723 2105 4.094294 TGCTACAAGAATGCGTTTATGTCC 59.906 41.667 12.01 7.20 0.00 4.02
1751 2133 9.515020 CTGCACTTGAAGAAGTTAAACAAAATA 57.485 29.630 0.00 0.00 40.68 1.40
1867 2253 4.887655 ACCGAAAATTGTTCCAAGAAGAGT 59.112 37.500 0.00 0.00 0.00 3.24
1902 2288 0.321122 AGCTCCGCTCAGTCAAAAGG 60.321 55.000 0.00 0.00 30.62 3.11
2077 2481 9.654663 GAGTCTTCACCAGTTACTGTATTTATT 57.345 33.333 11.68 0.00 0.00 1.40
2150 2557 4.384056 TGGTTTATTGCATTGGTTGGTTG 58.616 39.130 0.00 0.00 0.00 3.77
2175 2582 1.342074 TGGAGTAGAAGCACAGCAGT 58.658 50.000 0.00 0.00 0.00 4.40
2191 2598 6.590292 GCACAGCAGTCAGTTAAATACTCTTA 59.410 38.462 0.00 0.00 33.85 2.10
2203 2610 4.408182 AATACTCTTACAGCTTCGCCAT 57.592 40.909 0.00 0.00 0.00 4.40
2216 2623 0.032815 TCGCCATCAGTCACGACAAA 59.967 50.000 0.00 0.00 0.00 2.83
2227 2634 2.813474 CGACAAAGCGGCCATCGA 60.813 61.111 2.24 0.00 42.43 3.59
2232 2639 0.664761 CAAAGCGGCCATCGAATGAT 59.335 50.000 2.24 0.00 42.43 2.45
2312 2721 9.665719 TGCAGATTGATATTTTAGTGTTACTCA 57.334 29.630 0.00 0.00 0.00 3.41
2343 2755 2.596452 CGGACGTATATGGTGATGAGC 58.404 52.381 0.00 0.00 0.00 4.26
2431 2844 4.098960 TGTTACTCGAAACAACTCCAGAGT 59.901 41.667 0.18 0.00 44.94 3.24
2474 2888 4.376146 GCTAAGAGGCCTAGTGAGATTTG 58.624 47.826 4.42 0.00 0.00 2.32
2535 2949 6.106673 CGGAGTCATAGTTTCTGGTTTGTAT 58.893 40.000 0.00 0.00 0.00 2.29
2542 2956 5.941948 AGTTTCTGGTTTGTATACACAGC 57.058 39.130 13.09 13.09 35.67 4.40
2549 2963 3.550678 GGTTTGTATACACAGCGCTAGTC 59.449 47.826 10.99 0.89 35.67 2.59
2643 3057 6.591448 TCGCAGTATTTGATATAATGCCAGAG 59.409 38.462 9.14 0.00 41.02 3.35
2692 3107 3.600448 ATAATGGCTGGCCTAACATGT 57.400 42.857 13.05 0.00 36.94 3.21
2710 3125 3.090952 TGTGTACATTTTGCCTGCAAC 57.909 42.857 3.64 0.00 35.46 4.17
2713 3128 2.428530 TGTACATTTTGCCTGCAACACA 59.571 40.909 3.64 1.94 35.46 3.72
2714 3129 2.687700 ACATTTTGCCTGCAACACAA 57.312 40.000 3.64 0.00 35.46 3.33
2812 3294 4.183101 CAACTGCTGTTTGGTTTGATTGT 58.817 39.130 6.20 0.00 33.52 2.71
2814 3296 4.932146 ACTGCTGTTTGGTTTGATTGTAC 58.068 39.130 0.00 0.00 0.00 2.90
2815 3297 4.644685 ACTGCTGTTTGGTTTGATTGTACT 59.355 37.500 0.00 0.00 0.00 2.73
2826 3308 6.208402 TGGTTTGATTGTACTGTATGCACAAT 59.792 34.615 6.41 6.41 43.26 2.71
2870 3352 4.811969 ATGCATGCTGGAGATTCAAAAA 57.188 36.364 20.33 0.00 0.00 1.94
2911 3395 4.401202 TCAGTATTTCGCCACACAGAGATA 59.599 41.667 0.00 0.00 0.00 1.98
2956 3440 5.658190 ACCCATGTAAATCCCTGAAGAATTG 59.342 40.000 0.00 0.00 0.00 2.32
2960 3444 7.557719 CCATGTAAATCCCTGAAGAATTGTACT 59.442 37.037 0.00 0.00 0.00 2.73
2961 3445 8.960591 CATGTAAATCCCTGAAGAATTGTACTT 58.039 33.333 0.00 0.00 0.00 2.24
3029 3513 4.212214 ACACAAACGAGAGCAAAAGAGATC 59.788 41.667 0.00 0.00 0.00 2.75
3117 3601 8.690203 TTTTACCTCATCTTCTGAAATGTTGA 57.310 30.769 10.30 3.01 32.14 3.18
3118 3602 8.868522 TTTACCTCATCTTCTGAAATGTTGAT 57.131 30.769 10.30 0.00 32.14 2.57
3119 3603 8.868522 TTACCTCATCTTCTGAAATGTTGATT 57.131 30.769 10.30 0.00 32.14 2.57
3120 3604 7.771927 ACCTCATCTTCTGAAATGTTGATTT 57.228 32.000 10.30 0.00 34.29 2.17
3121 3605 7.600065 ACCTCATCTTCTGAAATGTTGATTTG 58.400 34.615 10.30 0.00 31.58 2.32
3122 3606 7.033791 CCTCATCTTCTGAAATGTTGATTTGG 58.966 38.462 10.30 3.24 31.58 3.28
3123 3607 7.094075 CCTCATCTTCTGAAATGTTGATTTGGA 60.094 37.037 10.30 0.00 31.58 3.53
3124 3608 8.357290 TCATCTTCTGAAATGTTGATTTGGAT 57.643 30.769 10.30 0.00 31.58 3.41
3125 3609 8.809066 TCATCTTCTGAAATGTTGATTTGGATT 58.191 29.630 10.30 0.00 31.58 3.01
3128 3612 8.522830 TCTTCTGAAATGTTGATTTGGATTACC 58.477 33.333 0.00 0.00 31.58 2.85
3129 3613 8.421249 TTCTGAAATGTTGATTTGGATTACCT 57.579 30.769 0.00 0.00 37.04 3.08
3130 3614 8.055279 TCTGAAATGTTGATTTGGATTACCTC 57.945 34.615 0.00 0.00 37.04 3.85
3131 3615 6.851609 TGAAATGTTGATTTGGATTACCTCG 58.148 36.000 0.00 0.00 37.04 4.63
3132 3616 6.432783 TGAAATGTTGATTTGGATTACCTCGT 59.567 34.615 0.00 0.00 37.04 4.18
3133 3617 6.834168 AATGTTGATTTGGATTACCTCGTT 57.166 33.333 0.00 0.00 37.04 3.85
3134 3618 5.873179 TGTTGATTTGGATTACCTCGTTC 57.127 39.130 0.00 0.00 37.04 3.95
3135 3619 5.309638 TGTTGATTTGGATTACCTCGTTCA 58.690 37.500 0.00 0.00 37.04 3.18
3136 3620 5.765677 TGTTGATTTGGATTACCTCGTTCAA 59.234 36.000 0.00 0.00 37.04 2.69
3137 3621 6.072728 TGTTGATTTGGATTACCTCGTTCAAG 60.073 38.462 0.00 0.00 37.04 3.02
3138 3622 5.556915 TGATTTGGATTACCTCGTTCAAGT 58.443 37.500 0.00 0.00 37.04 3.16
3139 3623 6.001460 TGATTTGGATTACCTCGTTCAAGTT 58.999 36.000 0.00 0.00 37.04 2.66
3140 3624 7.162761 TGATTTGGATTACCTCGTTCAAGTTA 58.837 34.615 0.00 0.00 37.04 2.24
3141 3625 7.827236 TGATTTGGATTACCTCGTTCAAGTTAT 59.173 33.333 0.00 0.00 37.04 1.89
3142 3626 7.989416 TTTGGATTACCTCGTTCAAGTTATT 57.011 32.000 0.00 0.00 37.04 1.40
3143 3627 7.989416 TTGGATTACCTCGTTCAAGTTATTT 57.011 32.000 0.00 0.00 37.04 1.40
3144 3628 7.989416 TGGATTACCTCGTTCAAGTTATTTT 57.011 32.000 0.00 0.00 37.04 1.82
3145 3629 8.036273 TGGATTACCTCGTTCAAGTTATTTTC 57.964 34.615 0.00 0.00 37.04 2.29
3146 3630 7.662258 TGGATTACCTCGTTCAAGTTATTTTCA 59.338 33.333 0.00 0.00 37.04 2.69
3147 3631 8.674607 GGATTACCTCGTTCAAGTTATTTTCAT 58.325 33.333 0.00 0.00 0.00 2.57
3148 3632 9.704098 GATTACCTCGTTCAAGTTATTTTCATC 57.296 33.333 0.00 0.00 0.00 2.92
3149 3633 6.496338 ACCTCGTTCAAGTTATTTTCATCC 57.504 37.500 0.00 0.00 0.00 3.51
3150 3634 6.001460 ACCTCGTTCAAGTTATTTTCATCCA 58.999 36.000 0.00 0.00 0.00 3.41
3151 3635 6.659242 ACCTCGTTCAAGTTATTTTCATCCAT 59.341 34.615 0.00 0.00 0.00 3.41
3152 3636 7.176690 ACCTCGTTCAAGTTATTTTCATCCATT 59.823 33.333 0.00 0.00 0.00 3.16
3153 3637 7.698130 CCTCGTTCAAGTTATTTTCATCCATTC 59.302 37.037 0.00 0.00 0.00 2.67
3154 3638 8.335532 TCGTTCAAGTTATTTTCATCCATTCT 57.664 30.769 0.00 0.00 0.00 2.40
3155 3639 9.443323 TCGTTCAAGTTATTTTCATCCATTCTA 57.557 29.630 0.00 0.00 0.00 2.10
3156 3640 9.490663 CGTTCAAGTTATTTTCATCCATTCTAC 57.509 33.333 0.00 0.00 0.00 2.59
3157 3641 9.788960 GTTCAAGTTATTTTCATCCATTCTACC 57.211 33.333 0.00 0.00 0.00 3.18
3158 3642 9.527157 TTCAAGTTATTTTCATCCATTCTACCA 57.473 29.630 0.00 0.00 0.00 3.25
3159 3643 9.177608 TCAAGTTATTTTCATCCATTCTACCAG 57.822 33.333 0.00 0.00 0.00 4.00
3160 3644 8.960591 CAAGTTATTTTCATCCATTCTACCAGT 58.039 33.333 0.00 0.00 0.00 4.00
3167 3651 9.527157 TTTTCATCCATTCTACCAGTATTTTCA 57.473 29.630 0.00 0.00 0.00 2.69
3168 3652 9.699410 TTTCATCCATTCTACCAGTATTTTCAT 57.301 29.630 0.00 0.00 0.00 2.57
3169 3653 8.908786 TCATCCATTCTACCAGTATTTTCATC 57.091 34.615 0.00 0.00 0.00 2.92
3170 3654 7.939039 TCATCCATTCTACCAGTATTTTCATCC 59.061 37.037 0.00 0.00 0.00 3.51
3171 3655 7.206789 TCCATTCTACCAGTATTTTCATCCA 57.793 36.000 0.00 0.00 0.00 3.41
3172 3656 7.815383 TCCATTCTACCAGTATTTTCATCCAT 58.185 34.615 0.00 0.00 0.00 3.41
3173 3657 8.281531 TCCATTCTACCAGTATTTTCATCCATT 58.718 33.333 0.00 0.00 0.00 3.16
3174 3658 8.917088 CCATTCTACCAGTATTTTCATCCATTT 58.083 33.333 0.00 0.00 0.00 2.32
3178 3662 9.403583 TCTACCAGTATTTTCATCCATTTTACC 57.596 33.333 0.00 0.00 0.00 2.85
3179 3663 7.418337 ACCAGTATTTTCATCCATTTTACCC 57.582 36.000 0.00 0.00 0.00 3.69
3180 3664 6.382859 ACCAGTATTTTCATCCATTTTACCCC 59.617 38.462 0.00 0.00 0.00 4.95
3181 3665 6.382570 CCAGTATTTTCATCCATTTTACCCCA 59.617 38.462 0.00 0.00 0.00 4.96
3182 3666 7.071071 CCAGTATTTTCATCCATTTTACCCCAT 59.929 37.037 0.00 0.00 0.00 4.00
3183 3667 8.485392 CAGTATTTTCATCCATTTTACCCCATT 58.515 33.333 0.00 0.00 0.00 3.16
3184 3668 9.722317 AGTATTTTCATCCATTTTACCCCATTA 57.278 29.630 0.00 0.00 0.00 1.90
3187 3671 6.800072 TTCATCCATTTTACCCCATTAACC 57.200 37.500 0.00 0.00 0.00 2.85
3188 3672 5.212745 TCATCCATTTTACCCCATTAACCC 58.787 41.667 0.00 0.00 0.00 4.11
3189 3673 4.694280 TCCATTTTACCCCATTAACCCA 57.306 40.909 0.00 0.00 0.00 4.51
3190 3674 5.024803 TCCATTTTACCCCATTAACCCAA 57.975 39.130 0.00 0.00 0.00 4.12
3191 3675 4.778427 TCCATTTTACCCCATTAACCCAAC 59.222 41.667 0.00 0.00 0.00 3.77
3192 3676 4.780554 CCATTTTACCCCATTAACCCAACT 59.219 41.667 0.00 0.00 0.00 3.16
3193 3677 5.249622 CCATTTTACCCCATTAACCCAACTT 59.750 40.000 0.00 0.00 0.00 2.66
3194 3678 5.810080 TTTTACCCCATTAACCCAACTTG 57.190 39.130 0.00 0.00 0.00 3.16
3195 3679 4.472690 TTACCCCATTAACCCAACTTGT 57.527 40.909 0.00 0.00 0.00 3.16
3196 3680 2.604139 ACCCCATTAACCCAACTTGTG 58.396 47.619 0.00 0.00 0.00 3.33
3197 3681 1.275010 CCCCATTAACCCAACTTGTGC 59.725 52.381 0.00 0.00 0.00 4.57
3198 3682 1.275010 CCCATTAACCCAACTTGTGCC 59.725 52.381 0.00 0.00 0.00 5.01
3199 3683 1.067915 CCATTAACCCAACTTGTGCCG 60.068 52.381 0.00 0.00 0.00 5.69
3200 3684 0.601057 ATTAACCCAACTTGTGCCGC 59.399 50.000 0.00 0.00 0.00 6.53
3201 3685 0.752009 TTAACCCAACTTGTGCCGCA 60.752 50.000 0.00 0.00 0.00 5.69
3202 3686 0.538516 TAACCCAACTTGTGCCGCAT 60.539 50.000 0.00 0.00 0.00 4.73
3203 3687 1.398958 AACCCAACTTGTGCCGCATT 61.399 50.000 0.00 0.00 0.00 3.56
3204 3688 1.367102 CCCAACTTGTGCCGCATTT 59.633 52.632 0.00 0.00 0.00 2.32
3205 3689 0.249826 CCCAACTTGTGCCGCATTTT 60.250 50.000 0.00 0.00 0.00 1.82
3206 3690 1.000283 CCCAACTTGTGCCGCATTTTA 60.000 47.619 0.00 0.00 0.00 1.52
3207 3691 2.353605 CCCAACTTGTGCCGCATTTTAT 60.354 45.455 0.00 0.00 0.00 1.40
3208 3692 2.923020 CCAACTTGTGCCGCATTTTATC 59.077 45.455 0.00 0.00 0.00 1.75
3209 3693 3.367292 CCAACTTGTGCCGCATTTTATCT 60.367 43.478 0.00 0.00 0.00 1.98
3210 3694 4.236935 CAACTTGTGCCGCATTTTATCTT 58.763 39.130 0.00 0.00 0.00 2.40
3211 3695 4.519540 ACTTGTGCCGCATTTTATCTTT 57.480 36.364 0.00 0.00 0.00 2.52
3212 3696 4.881920 ACTTGTGCCGCATTTTATCTTTT 58.118 34.783 0.00 0.00 0.00 2.27
3213 3697 6.019779 ACTTGTGCCGCATTTTATCTTTTA 57.980 33.333 0.00 0.00 0.00 1.52
3214 3698 6.630071 ACTTGTGCCGCATTTTATCTTTTAT 58.370 32.000 0.00 0.00 0.00 1.40
3215 3699 7.096551 ACTTGTGCCGCATTTTATCTTTTATT 58.903 30.769 0.00 0.00 0.00 1.40
3216 3700 7.602265 ACTTGTGCCGCATTTTATCTTTTATTT 59.398 29.630 0.00 0.00 0.00 1.40
3217 3701 7.288317 TGTGCCGCATTTTATCTTTTATTTG 57.712 32.000 0.00 0.00 0.00 2.32
3218 3702 6.870965 TGTGCCGCATTTTATCTTTTATTTGT 59.129 30.769 0.00 0.00 0.00 2.83
3219 3703 7.062839 TGTGCCGCATTTTATCTTTTATTTGTC 59.937 33.333 0.00 0.00 0.00 3.18
3220 3704 7.275560 GTGCCGCATTTTATCTTTTATTTGTCT 59.724 33.333 0.00 0.00 0.00 3.41
3221 3705 8.462811 TGCCGCATTTTATCTTTTATTTGTCTA 58.537 29.630 0.00 0.00 0.00 2.59
3222 3706 8.743099 GCCGCATTTTATCTTTTATTTGTCTAC 58.257 33.333 0.00 0.00 0.00 2.59
3223 3707 9.781834 CCGCATTTTATCTTTTATTTGTCTACA 57.218 29.630 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 233 9.858247 GTACGCGATTTAAGAAAAATGATCATA 57.142 29.630 15.93 0.00 0.00 2.15
249 255 2.186891 TCACGGCGTTGATAATGTACG 58.813 47.619 11.19 0.00 38.26 3.67
343 368 9.953697 AAAATGTTGATGAATTTCAAAACATGG 57.046 25.926 27.36 0.00 42.14 3.66
534 561 5.398169 TCGGGAAATCGAAAAATGTTCATG 58.602 37.500 0.00 0.00 36.12 3.07
549 576 3.181471 TGCACAAACAATGTTCGGGAAAT 60.181 39.130 0.00 0.00 41.46 2.17
552 579 1.393603 TGCACAAACAATGTTCGGGA 58.606 45.000 0.00 0.00 41.46 5.14
555 582 5.448479 CACAATTTTGCACAAACAATGTTCG 59.552 36.000 0.00 0.00 41.46 3.95
556 583 6.541086 TCACAATTTTGCACAAACAATGTTC 58.459 32.000 0.00 0.00 41.46 3.18
558 585 6.072838 TGTTCACAATTTTGCACAAACAATGT 60.073 30.769 0.00 0.00 45.34 2.71
559 586 6.312487 TGTTCACAATTTTGCACAAACAATG 58.688 32.000 0.00 0.00 0.00 2.82
560 587 6.492007 TGTTCACAATTTTGCACAAACAAT 57.508 29.167 0.00 0.00 0.00 2.71
561 588 5.929697 TGTTCACAATTTTGCACAAACAA 57.070 30.435 0.00 0.00 0.00 2.83
562 589 6.492007 AATGTTCACAATTTTGCACAAACA 57.508 29.167 1.26 0.96 0.00 2.83
567 594 7.462731 TCAGAAAAATGTTCACAATTTTGCAC 58.537 30.769 9.87 0.00 38.60 4.57
612 639 9.241919 TGGATTAAAAACTTGCTCATGATTAGA 57.758 29.630 0.00 0.00 0.00 2.10
613 640 9.294030 GTGGATTAAAAACTTGCTCATGATTAG 57.706 33.333 0.00 0.00 0.00 1.73
614 641 8.801299 TGTGGATTAAAAACTTGCTCATGATTA 58.199 29.630 0.00 0.00 0.00 1.75
623 650 5.982465 TGCTTTGTGGATTAAAAACTTGC 57.018 34.783 0.00 0.00 0.00 4.01
626 653 7.047271 ACAACATGCTTTGTGGATTAAAAACT 58.953 30.769 1.17 0.00 38.31 2.66
627 654 7.245419 ACAACATGCTTTGTGGATTAAAAAC 57.755 32.000 1.17 0.00 38.31 2.43
632 659 7.613801 AGGTATTACAACATGCTTTGTGGATTA 59.386 33.333 10.99 0.00 40.04 1.75
759 790 5.005299 GCGCCACACCAAATGTTTTTATATC 59.995 40.000 0.00 0.00 40.64 1.63
761 792 4.238514 GCGCCACACCAAATGTTTTTATA 58.761 39.130 0.00 0.00 40.64 0.98
763 794 2.474816 GCGCCACACCAAATGTTTTTA 58.525 42.857 0.00 0.00 40.64 1.52
806 847 1.228245 ACATCAACGGCAAGGCAGT 60.228 52.632 0.00 0.00 38.82 4.40
810 851 0.523072 CTTGGACATCAACGGCAAGG 59.477 55.000 0.00 0.00 0.00 3.61
833 874 3.893763 CGTTGTTTGCGTGGGCCA 61.894 61.111 0.00 0.00 38.85 5.36
834 875 3.536498 CTCGTTGTTTGCGTGGGCC 62.536 63.158 0.00 0.00 38.85 5.80
838 879 1.136992 CGTACTCTCGTTGTTTGCGTG 60.137 52.381 0.00 0.00 0.00 5.34
845 886 3.120060 GGACATGTACGTACTCTCGTTGT 60.120 47.826 25.12 17.23 43.80 3.32
849 890 1.004185 CGGGACATGTACGTACTCTCG 60.004 57.143 25.12 21.14 0.00 4.04
850 891 2.283298 TCGGGACATGTACGTACTCTC 58.717 52.381 25.12 14.13 0.00 3.20
851 892 2.408271 TCGGGACATGTACGTACTCT 57.592 50.000 25.12 10.92 0.00 3.24
852 893 3.705043 AATCGGGACATGTACGTACTC 57.295 47.619 25.12 14.83 0.00 2.59
853 894 3.316308 GGTAATCGGGACATGTACGTACT 59.684 47.826 25.12 6.47 0.00 2.73
854 895 3.550842 GGGTAATCGGGACATGTACGTAC 60.551 52.174 18.90 18.90 0.00 3.67
855 896 2.622942 GGGTAATCGGGACATGTACGTA 59.377 50.000 18.35 3.23 0.00 3.57
856 897 1.410153 GGGTAATCGGGACATGTACGT 59.590 52.381 18.35 0.00 0.00 3.57
857 898 1.269936 GGGGTAATCGGGACATGTACG 60.270 57.143 14.33 14.33 0.00 3.67
858 899 1.071228 GGGGGTAATCGGGACATGTAC 59.929 57.143 0.00 0.00 0.00 2.90
971 1023 1.035385 TTCTGCCTCGCACTATCGGA 61.035 55.000 0.00 0.00 33.79 4.55
1004 1090 1.215647 GTCAGGAGTGACGGCGAAT 59.784 57.895 16.62 0.00 43.75 3.34
1014 1100 1.681666 CAGGTGCATGGTCAGGAGT 59.318 57.895 0.00 0.00 0.00 3.85
1063 1149 2.126071 CTCGATTGCCACCGACGT 60.126 61.111 0.00 0.00 0.00 4.34
1074 1163 2.066999 GCCTCCCTCCACCTCGATT 61.067 63.158 0.00 0.00 0.00 3.34
1152 1241 2.169352 GCTGAGGAAGTAGCCATTGAGA 59.831 50.000 0.00 0.00 33.89 3.27
1158 1247 1.599047 GCAGCTGAGGAAGTAGCCA 59.401 57.895 20.43 0.00 40.76 4.75
1194 1283 4.278513 CCCCAGGTGACCGCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
1325 1420 6.696583 CGCAAATAATACATGCAATCTTCCAA 59.303 34.615 0.00 0.00 40.04 3.53
1341 1543 1.069906 GCTTCGATCGCCGCAAATAAT 60.070 47.619 19.12 0.00 38.37 1.28
1343 1545 0.529773 AGCTTCGATCGCCGCAAATA 60.530 50.000 23.69 0.00 38.37 1.40
1344 1546 0.529773 TAGCTTCGATCGCCGCAAAT 60.530 50.000 23.69 10.87 38.37 2.32
1347 1549 2.278596 GTAGCTTCGATCGCCGCA 60.279 61.111 23.69 11.60 38.37 5.69
1349 1551 0.504384 CAATGTAGCTTCGATCGCCG 59.496 55.000 11.09 4.61 40.25 6.46
1351 1553 1.332377 GCACAATGTAGCTTCGATCGC 60.332 52.381 11.09 0.00 0.00 4.58
1353 1555 1.332377 GCGCACAATGTAGCTTCGATC 60.332 52.381 0.30 0.00 0.00 3.69
1354 1556 0.652592 GCGCACAATGTAGCTTCGAT 59.347 50.000 0.30 0.00 0.00 3.59
1356 1558 1.296145 CGCGCACAATGTAGCTTCG 60.296 57.895 8.75 7.70 0.00 3.79
1357 1559 1.581147 GCGCGCACAATGTAGCTTC 60.581 57.895 29.10 0.00 0.00 3.86
1358 1560 2.480555 GCGCGCACAATGTAGCTT 59.519 55.556 29.10 0.00 0.00 3.74
1359 1561 3.853330 CGCGCGCACAATGTAGCT 61.853 61.111 32.61 0.00 0.00 3.32
1361 1563 1.482621 ATCTCGCGCGCACAATGTAG 61.483 55.000 32.61 15.02 0.00 2.74
1373 1601 0.855349 GGTGCTAATGACATCTCGCG 59.145 55.000 0.00 0.00 0.00 5.87
1374 1602 1.863454 CAGGTGCTAATGACATCTCGC 59.137 52.381 0.00 0.00 0.00 5.03
1385 1613 4.774726 AGAGAATCAGAGAACAGGTGCTAA 59.225 41.667 0.00 0.00 37.82 3.09
1391 1619 5.404466 AAGTCAGAGAATCAGAGAACAGG 57.596 43.478 0.00 0.00 37.82 4.00
1510 1766 6.070251 TCAGTATCCAACTTGCTCAAATAGGA 60.070 38.462 0.00 0.00 35.76 2.94
1544 1800 6.857964 CGACACTTTAATATCCCAATGCATTC 59.142 38.462 9.53 0.00 0.00 2.67
1586 1945 8.764524 AATCTATGAACAAGAACAGTACAGTC 57.235 34.615 0.00 0.00 0.00 3.51
1616 1989 3.067320 TCGCAACAACCACATGAAAATGA 59.933 39.130 0.00 0.00 0.00 2.57
1660 2041 8.991783 ACTGAATCACATGATCAGGAAATAAT 57.008 30.769 15.42 0.00 35.72 1.28
1723 2105 5.879237 TGTTTAACTTCTTCAAGTGCAGTG 58.121 37.500 0.00 0.00 42.45 3.66
1753 2135 8.526147 AGATTCAGATCAAAATTTCGTGGAAAT 58.474 29.630 0.00 0.00 37.98 2.17
1867 2253 2.494059 GAGCTGTTGTGTTGGAGCTTA 58.506 47.619 0.00 0.00 41.88 3.09
1902 2288 1.268640 CGGTAAGTAGCTCTTCGCCTC 60.269 57.143 0.00 0.00 40.39 4.70
2014 2400 2.236146 AGTTGTCAGTTGTCACTCACCA 59.764 45.455 0.00 0.00 0.00 4.17
2112 2516 7.226523 GCAATAAACCAAACAAGAACCTTTCAT 59.773 33.333 0.00 0.00 0.00 2.57
2150 2557 3.559242 GCTGTGCTTCTACTCCATTGATC 59.441 47.826 0.00 0.00 0.00 2.92
2203 2610 1.954146 GCCGCTTTGTCGTGACTGA 60.954 57.895 1.23 0.00 0.00 3.41
2216 2623 4.054085 CATCATTCGATGGCCGCT 57.946 55.556 0.00 0.00 44.59 5.52
2312 2721 2.358939 ATACGTCCGCGAGTTCTTTT 57.641 45.000 8.23 0.00 42.00 2.27
2343 2755 0.592637 TGCGCCTCTTTGACATGTTG 59.407 50.000 4.18 0.00 0.00 3.33
2427 2840 6.648310 CGATGCCAGTTTATCATCATAACTCT 59.352 38.462 0.00 0.00 37.14 3.24
2431 2844 5.308014 AGCGATGCCAGTTTATCATCATAA 58.692 37.500 0.00 0.00 37.14 1.90
2474 2888 3.593442 TGATGGTAATGGGGAATCACC 57.407 47.619 0.00 0.00 38.08 4.02
2535 2949 3.442625 ACTATTGTGACTAGCGCTGTGTA 59.557 43.478 22.90 0.00 0.00 2.90
2542 2956 4.495422 ACCTGAAACTATTGTGACTAGCG 58.505 43.478 0.00 0.00 0.00 4.26
2549 2963 7.174946 ACTGTATCCAAACCTGAAACTATTGTG 59.825 37.037 0.00 0.00 0.00 3.33
2643 3057 2.808543 ACAGAAAGACATCGGCAAGTTC 59.191 45.455 0.00 0.00 0.00 3.01
2692 3107 2.428530 TGTGTTGCAGGCAAAATGTACA 59.571 40.909 8.47 0.00 37.70 2.90
2826 3308 9.681692 GCATATGCATTGTGAAATACTGAATAA 57.318 29.630 22.84 0.00 41.59 1.40
2870 3352 5.743636 ACTGAATGCTTCTTCTCTCTCTT 57.256 39.130 0.00 0.00 0.00 2.85
2898 3382 4.081642 TCAAGTAACCTATCTCTGTGTGGC 60.082 45.833 0.00 0.00 0.00 5.01
3029 3513 4.320608 AACTTTTGTTGGTGGTATGCAG 57.679 40.909 0.00 0.00 41.77 4.41
3091 3575 9.130661 TCAACATTTCAGAAGATGAGGTAAAAA 57.869 29.630 10.52 0.00 39.68 1.94
3092 3576 8.690203 TCAACATTTCAGAAGATGAGGTAAAA 57.310 30.769 10.52 0.00 39.68 1.52
3093 3577 8.868522 ATCAACATTTCAGAAGATGAGGTAAA 57.131 30.769 10.52 0.00 39.68 2.01
3094 3578 8.868522 AATCAACATTTCAGAAGATGAGGTAA 57.131 30.769 10.52 0.00 39.68 2.85
3095 3579 8.733458 CAAATCAACATTTCAGAAGATGAGGTA 58.267 33.333 10.52 0.00 39.68 3.08
3096 3580 7.309621 CCAAATCAACATTTCAGAAGATGAGGT 60.310 37.037 10.52 0.00 39.68 3.85
3097 3581 7.033791 CCAAATCAACATTTCAGAAGATGAGG 58.966 38.462 10.52 1.43 39.68 3.86
3098 3582 7.823665 TCCAAATCAACATTTCAGAAGATGAG 58.176 34.615 10.52 5.15 39.68 2.90
3099 3583 7.764141 TCCAAATCAACATTTCAGAAGATGA 57.236 32.000 10.52 0.34 35.62 2.92
3100 3584 8.997621 AATCCAAATCAACATTTCAGAAGATG 57.002 30.769 4.62 4.62 28.97 2.90
3102 3586 8.522830 GGTAATCCAAATCAACATTTCAGAAGA 58.477 33.333 0.00 0.00 28.97 2.87
3103 3587 8.526147 AGGTAATCCAAATCAACATTTCAGAAG 58.474 33.333 0.00 0.00 35.89 2.85
3104 3588 8.421249 AGGTAATCCAAATCAACATTTCAGAA 57.579 30.769 0.00 0.00 35.89 3.02
3105 3589 7.148255 CGAGGTAATCCAAATCAACATTTCAGA 60.148 37.037 0.00 0.00 35.89 3.27
3106 3590 6.968904 CGAGGTAATCCAAATCAACATTTCAG 59.031 38.462 0.00 0.00 35.89 3.02
3107 3591 6.432783 ACGAGGTAATCCAAATCAACATTTCA 59.567 34.615 0.00 0.00 35.89 2.69
3108 3592 6.852664 ACGAGGTAATCCAAATCAACATTTC 58.147 36.000 0.00 0.00 35.89 2.17
3109 3593 6.834168 ACGAGGTAATCCAAATCAACATTT 57.166 33.333 0.00 0.00 35.89 2.32
3110 3594 6.432783 TGAACGAGGTAATCCAAATCAACATT 59.567 34.615 0.00 0.00 35.89 2.71
3111 3595 5.943416 TGAACGAGGTAATCCAAATCAACAT 59.057 36.000 0.00 0.00 35.89 2.71
3112 3596 5.309638 TGAACGAGGTAATCCAAATCAACA 58.690 37.500 0.00 0.00 35.89 3.33
3113 3597 5.873179 TGAACGAGGTAATCCAAATCAAC 57.127 39.130 0.00 0.00 35.89 3.18
3114 3598 6.001460 ACTTGAACGAGGTAATCCAAATCAA 58.999 36.000 0.00 0.00 35.89 2.57
3115 3599 5.556915 ACTTGAACGAGGTAATCCAAATCA 58.443 37.500 0.00 0.00 35.89 2.57
3116 3600 6.496338 AACTTGAACGAGGTAATCCAAATC 57.504 37.500 0.00 0.00 35.89 2.17
3117 3601 8.575649 AATAACTTGAACGAGGTAATCCAAAT 57.424 30.769 0.00 0.00 35.89 2.32
3118 3602 7.989416 AATAACTTGAACGAGGTAATCCAAA 57.011 32.000 0.00 0.00 35.89 3.28
3119 3603 7.989416 AAATAACTTGAACGAGGTAATCCAA 57.011 32.000 0.00 0.00 35.89 3.53
3120 3604 7.662258 TGAAAATAACTTGAACGAGGTAATCCA 59.338 33.333 0.00 0.00 35.89 3.41
3121 3605 8.036273 TGAAAATAACTTGAACGAGGTAATCC 57.964 34.615 0.00 0.00 0.00 3.01
3122 3606 9.704098 GATGAAAATAACTTGAACGAGGTAATC 57.296 33.333 0.00 0.00 0.00 1.75
3123 3607 8.674607 GGATGAAAATAACTTGAACGAGGTAAT 58.325 33.333 0.00 0.00 0.00 1.89
3124 3608 7.662258 TGGATGAAAATAACTTGAACGAGGTAA 59.338 33.333 0.00 0.00 0.00 2.85
3125 3609 7.162761 TGGATGAAAATAACTTGAACGAGGTA 58.837 34.615 0.00 0.00 0.00 3.08
3126 3610 6.001460 TGGATGAAAATAACTTGAACGAGGT 58.999 36.000 0.00 0.00 0.00 3.85
3127 3611 6.494893 TGGATGAAAATAACTTGAACGAGG 57.505 37.500 0.00 0.00 0.00 4.63
3128 3612 8.454106 AGAATGGATGAAAATAACTTGAACGAG 58.546 33.333 0.00 0.00 0.00 4.18
3129 3613 8.335532 AGAATGGATGAAAATAACTTGAACGA 57.664 30.769 0.00 0.00 0.00 3.85
3130 3614 9.490663 GTAGAATGGATGAAAATAACTTGAACG 57.509 33.333 0.00 0.00 0.00 3.95
3131 3615 9.788960 GGTAGAATGGATGAAAATAACTTGAAC 57.211 33.333 0.00 0.00 0.00 3.18
3132 3616 9.527157 TGGTAGAATGGATGAAAATAACTTGAA 57.473 29.630 0.00 0.00 0.00 2.69
3133 3617 9.177608 CTGGTAGAATGGATGAAAATAACTTGA 57.822 33.333 0.00 0.00 0.00 3.02
3134 3618 8.960591 ACTGGTAGAATGGATGAAAATAACTTG 58.039 33.333 0.00 0.00 0.00 3.16
3141 3625 9.527157 TGAAAATACTGGTAGAATGGATGAAAA 57.473 29.630 0.00 0.00 0.00 2.29
3142 3626 9.699410 ATGAAAATACTGGTAGAATGGATGAAA 57.301 29.630 0.00 0.00 0.00 2.69
3143 3627 9.342308 GATGAAAATACTGGTAGAATGGATGAA 57.658 33.333 0.00 0.00 0.00 2.57
3144 3628 7.939039 GGATGAAAATACTGGTAGAATGGATGA 59.061 37.037 0.00 0.00 0.00 2.92
3145 3629 7.720957 TGGATGAAAATACTGGTAGAATGGATG 59.279 37.037 0.00 0.00 0.00 3.51
3146 3630 7.815383 TGGATGAAAATACTGGTAGAATGGAT 58.185 34.615 0.00 0.00 0.00 3.41
3147 3631 7.206789 TGGATGAAAATACTGGTAGAATGGA 57.793 36.000 0.00 0.00 0.00 3.41
3148 3632 8.469309 AATGGATGAAAATACTGGTAGAATGG 57.531 34.615 0.00 0.00 0.00 3.16
3152 3636 9.403583 GGTAAAATGGATGAAAATACTGGTAGA 57.596 33.333 0.00 0.00 0.00 2.59
3153 3637 8.630037 GGGTAAAATGGATGAAAATACTGGTAG 58.370 37.037 0.00 0.00 0.00 3.18
3154 3638 7.562088 GGGGTAAAATGGATGAAAATACTGGTA 59.438 37.037 0.00 0.00 0.00 3.25
3155 3639 6.382859 GGGGTAAAATGGATGAAAATACTGGT 59.617 38.462 0.00 0.00 0.00 4.00
3156 3640 6.382570 TGGGGTAAAATGGATGAAAATACTGG 59.617 38.462 0.00 0.00 0.00 4.00
3157 3641 7.416964 TGGGGTAAAATGGATGAAAATACTG 57.583 36.000 0.00 0.00 0.00 2.74
3158 3642 8.622572 AATGGGGTAAAATGGATGAAAATACT 57.377 30.769 0.00 0.00 0.00 2.12
3161 3645 8.271458 GGTTAATGGGGTAAAATGGATGAAAAT 58.729 33.333 0.00 0.00 0.00 1.82
3162 3646 7.311360 GGGTTAATGGGGTAAAATGGATGAAAA 60.311 37.037 0.00 0.00 0.00 2.29
3163 3647 6.157123 GGGTTAATGGGGTAAAATGGATGAAA 59.843 38.462 0.00 0.00 0.00 2.69
3164 3648 5.663556 GGGTTAATGGGGTAAAATGGATGAA 59.336 40.000 0.00 0.00 0.00 2.57
3165 3649 5.212745 GGGTTAATGGGGTAAAATGGATGA 58.787 41.667 0.00 0.00 0.00 2.92
3166 3650 4.965532 TGGGTTAATGGGGTAAAATGGATG 59.034 41.667 0.00 0.00 0.00 3.51
3167 3651 5.227917 TGGGTTAATGGGGTAAAATGGAT 57.772 39.130 0.00 0.00 0.00 3.41
3168 3652 4.694280 TGGGTTAATGGGGTAAAATGGA 57.306 40.909 0.00 0.00 0.00 3.41
3169 3653 4.780554 AGTTGGGTTAATGGGGTAAAATGG 59.219 41.667 0.00 0.00 0.00 3.16
3170 3654 6.169800 CAAGTTGGGTTAATGGGGTAAAATG 58.830 40.000 0.00 0.00 0.00 2.32
3171 3655 5.847265 ACAAGTTGGGTTAATGGGGTAAAAT 59.153 36.000 7.96 0.00 0.00 1.82
3172 3656 5.070580 CACAAGTTGGGTTAATGGGGTAAAA 59.929 40.000 7.96 0.00 0.00 1.52
3173 3657 4.589374 CACAAGTTGGGTTAATGGGGTAAA 59.411 41.667 7.96 0.00 0.00 2.01
3174 3658 4.153411 CACAAGTTGGGTTAATGGGGTAA 58.847 43.478 7.96 0.00 0.00 2.85
3175 3659 3.768878 CACAAGTTGGGTTAATGGGGTA 58.231 45.455 7.96 0.00 0.00 3.69
3176 3660 2.604139 CACAAGTTGGGTTAATGGGGT 58.396 47.619 7.96 0.00 0.00 4.95
3177 3661 1.275010 GCACAAGTTGGGTTAATGGGG 59.725 52.381 7.03 0.00 0.00 4.96
3178 3662 1.275010 GGCACAAGTTGGGTTAATGGG 59.725 52.381 7.03 0.00 0.00 4.00
3179 3663 1.067915 CGGCACAAGTTGGGTTAATGG 60.068 52.381 7.03 0.00 0.00 3.16
3180 3664 1.668628 GCGGCACAAGTTGGGTTAATG 60.669 52.381 7.03 0.00 0.00 1.90
3181 3665 0.601057 GCGGCACAAGTTGGGTTAAT 59.399 50.000 7.03 0.00 0.00 1.40
3182 3666 0.752009 TGCGGCACAAGTTGGGTTAA 60.752 50.000 7.03 0.00 0.00 2.01
3183 3667 0.538516 ATGCGGCACAAGTTGGGTTA 60.539 50.000 4.03 0.00 0.00 2.85
3184 3668 1.398958 AATGCGGCACAAGTTGGGTT 61.399 50.000 4.03 0.00 0.00 4.11
3185 3669 1.398958 AAATGCGGCACAAGTTGGGT 61.399 50.000 4.03 0.00 0.00 4.51
3186 3670 0.249826 AAAATGCGGCACAAGTTGGG 60.250 50.000 4.03 3.81 0.00 4.12
3187 3671 2.430546 TAAAATGCGGCACAAGTTGG 57.569 45.000 4.03 0.00 0.00 3.77
3188 3672 3.836949 AGATAAAATGCGGCACAAGTTG 58.163 40.909 4.03 0.00 0.00 3.16
3189 3673 4.519540 AAGATAAAATGCGGCACAAGTT 57.480 36.364 4.03 0.00 0.00 2.66
3190 3674 4.519540 AAAGATAAAATGCGGCACAAGT 57.480 36.364 4.03 0.00 0.00 3.16
3191 3675 7.524294 AATAAAAGATAAAATGCGGCACAAG 57.476 32.000 4.03 0.00 0.00 3.16
3192 3676 7.386299 ACAAATAAAAGATAAAATGCGGCACAA 59.614 29.630 4.03 0.00 0.00 3.33
3193 3677 6.870965 ACAAATAAAAGATAAAATGCGGCACA 59.129 30.769 4.03 0.00 0.00 4.57
3194 3678 7.275560 AGACAAATAAAAGATAAAATGCGGCAC 59.724 33.333 4.03 0.00 0.00 5.01
3195 3679 7.319646 AGACAAATAAAAGATAAAATGCGGCA 58.680 30.769 4.58 4.58 0.00 5.69
3196 3680 7.755582 AGACAAATAAAAGATAAAATGCGGC 57.244 32.000 0.00 0.00 0.00 6.53
3197 3681 9.781834 TGTAGACAAATAAAAGATAAAATGCGG 57.218 29.630 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.